Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45089.t1 | XP_003613304.1 | 94.5 | 237 | 13 | 0 | 56 | 292 | 197 | 433 | 1.40E-131 | 479.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45089.t1 | O04523 | 48.1 | 214 | 93 | 6 | 70 | 282 | 218 | 414 | 3.1e-55 | 216.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45089.t1 | G7K2T6 | 94.5 | 237 | 13 | 0 | 56 | 292 | 197 | 433 | 1.0e-131 | 479.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055356 | MS.gene45089 | 0.808255 | 3.39E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45089.t1 | MTR_5g035080 | 94.515 | 237 | 13 | 0 | 56 | 292 | 197 | 433 | 4.22e-168 | 473 |
| MS.gene45089.t1 | MTR_5g035140 | 69.469 | 226 | 68 | 1 | 56 | 281 | 43 | 267 | 8.52e-121 | 347 |
| MS.gene45089.t1 | MTR_5g035150 | 73.246 | 228 | 58 | 2 | 56 | 283 | 211 | 435 | 2.35e-118 | 347 |
| MS.gene45089.t1 | MTR_8g104970 | 67.556 | 225 | 72 | 1 | 56 | 280 | 243 | 466 | 2.83e-113 | 335 |
| MS.gene45089.t1 | MTR_3g109840 | 68.584 | 226 | 69 | 2 | 56 | 281 | 194 | 417 | 9.89e-113 | 332 |
| MS.gene45089.t1 | MTR_5g035070 | 64.557 | 237 | 79 | 3 | 56 | 292 | 213 | 444 | 5.05e-107 | 318 |
| MS.gene45089.t1 | MTR_7g033230 | 59.766 | 256 | 97 | 3 | 31 | 281 | 357 | 611 | 7.41e-105 | 318 |
| MS.gene45089.t1 | MTR_5g035090 | 63.291 | 237 | 82 | 3 | 47 | 283 | 200 | 431 | 3.26e-104 | 311 |
| MS.gene45089.t1 | MTR_7g033230 | 56.410 | 273 | 113 | 3 | 14 | 281 | 410 | 681 | 6.02e-104 | 318 |
| MS.gene45089.t1 | MTR_8g099300 | 41.905 | 210 | 112 | 6 | 72 | 279 | 218 | 419 | 1.13e-49 | 170 |
| MS.gene45089.t1 | MTR_6g016880 | 35.983 | 239 | 138 | 8 | 46 | 280 | 193 | 420 | 3.52e-46 | 161 |
| MS.gene45089.t1 | MTR_6g016875 | 36.515 | 241 | 134 | 10 | 46 | 280 | 182 | 409 | 3.42e-44 | 155 |
| MS.gene45089.t1 | MTR_8g027900 | 33.459 | 266 | 165 | 6 | 18 | 279 | 298 | 555 | 1.23e-43 | 156 |
| MS.gene45089.t1 | MTR_6g007777 | 36.493 | 211 | 122 | 6 | 72 | 281 | 260 | 459 | 2.18e-39 | 144 |
| MS.gene45089.t1 | MTR_7g019120 | 35.714 | 210 | 123 | 7 | 72 | 280 | 223 | 421 | 4.52e-39 | 142 |
| MS.gene45089.t1 | MTR_2g016060 | 34.091 | 264 | 144 | 12 | 33 | 281 | 154 | 402 | 3.75e-38 | 139 |
| MS.gene45089.t1 | MTR_1g076690 | 31.674 | 221 | 129 | 9 | 72 | 281 | 363 | 572 | 5.69e-27 | 110 |
| MS.gene45089.t1 | MTR_6g061710 | 31.222 | 221 | 130 | 9 | 72 | 281 | 307 | 516 | 1.56e-23 | 100 |
| MS.gene45089.t1 | MTR_7g117160 | 34.839 | 155 | 66 | 6 | 124 | 278 | 70 | 189 | 3.67e-20 | 86.3 |
| MS.gene45089.t1 | MTR_6g016240 | 34.146 | 123 | 67 | 5 | 159 | 279 | 306 | 416 | 1.46e-15 | 76.6 |
| MS.gene45089.t1 | MTR_7g094750 | 27.928 | 222 | 122 | 13 | 71 | 281 | 240 | 434 | 1.85e-15 | 76.6 |
| MS.gene45089.t1 | MTR_1g058380 | 26.244 | 221 | 124 | 12 | 71 | 281 | 206 | 397 | 2.27e-15 | 76.3 |
| MS.gene45089.t1 | MTR_0136s0010 | 28.311 | 219 | 125 | 11 | 71 | 281 | 318 | 512 | 6.93e-15 | 75.1 |
| MS.gene45089.t1 | MTR_8g069790 | 27.391 | 230 | 120 | 12 | 68 | 282 | 322 | 519 | 1.31e-14 | 74.3 |
| MS.gene45089.t1 | MTR_4g125060 | 26.267 | 217 | 121 | 7 | 71 | 279 | 325 | 510 | 5.08e-14 | 72.4 |
| MS.gene45089.t1 | MTR_4g125060 | 24.883 | 213 | 129 | 6 | 71 | 279 | 354 | 539 | 5.11e-14 | 72.4 |
| MS.gene45089.t1 | MTR_2g022560 | 28.037 | 214 | 135 | 8 | 71 | 283 | 246 | 441 | 6.92e-14 | 72.0 |
| MS.gene45089.t1 | MTR_4g125060 | 25.352 | 213 | 128 | 7 | 71 | 279 | 286 | 471 | 7.28e-14 | 72.0 |
| MS.gene45089.t1 | MTR_7g093450 | 27.826 | 230 | 132 | 11 | 71 | 290 | 396 | 601 | 9.54e-13 | 68.6 |
| MS.gene45089.t1 | MTR_8g093870 | 23.529 | 221 | 122 | 8 | 71 | 279 | 287 | 472 | 1.28e-12 | 68.2 |
| MS.gene45089.t1 | MTR_8g093530 | 28.185 | 259 | 148 | 15 | 26 | 279 | 191 | 416 | 1.80e-12 | 67.4 |
| MS.gene45089.t1 | MTR_4g126950 | 24.820 | 278 | 174 | 12 | 9 | 279 | 197 | 446 | 3.08e-12 | 67.0 |
| MS.gene45089.t1 | MTR_3g464570 | 27.551 | 196 | 124 | 8 | 88 | 279 | 91 | 272 | 6.67e-12 | 65.1 |
| MS.gene45089.t1 | MTR_5g059400 | 26.809 | 235 | 128 | 14 | 71 | 290 | 323 | 528 | 8.90e-12 | 65.5 |
| MS.gene45089.t1 | MTR_1g116130 | 26.809 | 235 | 128 | 14 | 71 | 290 | 323 | 528 | 8.90e-12 | 65.5 |
| MS.gene45089.t1 | MTR_5g033800 | 26.697 | 221 | 131 | 10 | 68 | 281 | 289 | 485 | 1.04e-11 | 65.5 |
| MS.gene45089.t1 | MTR_4g016940 | 28.761 | 226 | 125 | 12 | 67 | 279 | 225 | 427 | 1.95e-11 | 64.3 |
| MS.gene45089.t1 | MTR_3g464570 | 28.125 | 192 | 120 | 8 | 88 | 275 | 195 | 372 | 1.99e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45089.t1 | AT1G70230 | 48.131 | 214 | 93 | 6 | 70 | 282 | 218 | 414 | 9.27e-66 | 211 |
| MS.gene45089.t1 | AT1G01430 | 38.605 | 215 | 117 | 7 | 72 | 279 | 241 | 447 | 1.39e-45 | 160 |
| MS.gene45089.t1 | AT3G02440 | 35.918 | 245 | 141 | 7 | 46 | 285 | 249 | 482 | 8.85e-44 | 155 |
| MS.gene45089.t1 | AT3G02440 | 35.918 | 245 | 141 | 7 | 46 | 285 | 241 | 474 | 9.17e-44 | 155 |
| MS.gene45089.t1 | AT5G15890 | 38.710 | 217 | 113 | 8 | 68 | 280 | 323 | 523 | 7.47e-43 | 154 |
| MS.gene45089.t1 | AT5G15900 | 35.918 | 245 | 141 | 9 | 46 | 286 | 184 | 416 | 1.86e-42 | 151 |
| MS.gene45089.t1 | AT5G15900 | 35.918 | 245 | 141 | 9 | 46 | 286 | 203 | 435 | 2.26e-42 | 151 |
| MS.gene45089.t1 | AT4G01080 | 37.273 | 220 | 123 | 8 | 64 | 277 | 218 | 428 | 1.16e-40 | 146 |
| MS.gene45089.t1 | AT4G23790 | 32.463 | 268 | 168 | 7 | 18 | 279 | 167 | 427 | 7.89e-40 | 144 |
| MS.gene45089.t1 | AT4G11090 | 33.209 | 268 | 164 | 9 | 18 | 279 | 167 | 425 | 4.64e-37 | 137 |
| MS.gene45089.t1 | AT3G28150 | 31.020 | 245 | 143 | 9 | 46 | 281 | 185 | 412 | 9.52e-32 | 122 |
| MS.gene45089.t1 | AT4G25360 | 29.596 | 223 | 133 | 7 | 72 | 281 | 315 | 526 | 1.30e-23 | 100 |
| MS.gene45089.t1 | AT4G25360 | 29.596 | 223 | 133 | 7 | 72 | 281 | 315 | 526 | 1.30e-23 | 100 |
| MS.gene45089.t1 | AT5G51640 | 31.250 | 240 | 125 | 12 | 72 | 290 | 278 | 498 | 9.70e-23 | 98.2 |
| MS.gene45089.t1 | AT2G14530 | 28.125 | 224 | 114 | 11 | 72 | 279 | 214 | 406 | 1.33e-18 | 85.5 |
| MS.gene45089.t1 | AT5G64020 | 28.251 | 223 | 129 | 9 | 67 | 279 | 207 | 408 | 2.92e-18 | 84.7 |
| MS.gene45089.t1 | AT3G11570 | 30.660 | 212 | 121 | 11 | 71 | 279 | 231 | 419 | 6.43e-18 | 83.6 |
| MS.gene45089.t1 | AT5G19160 | 28.431 | 204 | 131 | 8 | 89 | 290 | 265 | 455 | 5.35e-16 | 78.2 |
| MS.gene45089.t1 | AT5G20680 | 25.225 | 222 | 119 | 7 | 70 | 279 | 365 | 551 | 1.02e-15 | 77.4 |
| MS.gene45089.t1 | AT5G20680 | 25.225 | 222 | 119 | 7 | 70 | 279 | 365 | 551 | 1.02e-15 | 77.4 |
| MS.gene45089.t1 | AT5G20680 | 25.225 | 222 | 119 | 7 | 70 | 279 | 365 | 551 | 1.02e-15 | 77.4 |
| MS.gene45089.t1 | AT5G20680 | 25.225 | 222 | 119 | 7 | 70 | 279 | 365 | 551 | 1.02e-15 | 77.4 |
| MS.gene45089.t1 | AT5G20680 | 25.225 | 222 | 119 | 7 | 70 | 279 | 347 | 533 | 1.07e-15 | 77.4 |
| MS.gene45089.t1 | AT5G20680 | 25.225 | 222 | 119 | 7 | 70 | 279 | 271 | 457 | 1.33e-15 | 77.0 |
| MS.gene45089.t1 | AT3G06080 | 25.114 | 219 | 133 | 8 | 71 | 281 | 252 | 447 | 7.52e-15 | 74.7 |
| MS.gene45089.t1 | AT5G06700 | 28.959 | 221 | 121 | 12 | 71 | 281 | 403 | 597 | 1.16e-14 | 74.3 |
| MS.gene45089.t1 | AT5G06230 | 27.830 | 212 | 127 | 8 | 71 | 279 | 176 | 364 | 2.52e-13 | 70.1 |
| MS.gene45089.t1 | AT5G06230 | 27.830 | 212 | 127 | 8 | 71 | 279 | 217 | 405 | 2.84e-13 | 70.1 |
| MS.gene45089.t1 | AT3G12060 | 27.948 | 229 | 129 | 12 | 71 | 289 | 344 | 546 | 3.42e-13 | 70.1 |
| MS.gene45089.t1 | AT5G58600 | 25.758 | 198 | 123 | 6 | 89 | 279 | 220 | 400 | 1.18e-12 | 68.2 |
| MS.gene45089.t1 | AT1G48880 | 30.660 | 212 | 110 | 12 | 70 | 279 | 263 | 439 | 1.59e-12 | 67.8 |
| MS.gene45089.t1 | AT2G42570 | 28.079 | 203 | 101 | 11 | 87 | 279 | 197 | 364 | 5.01e-12 | 66.2 |
| MS.gene45089.t1 | AT5G20590 | 26.852 | 216 | 125 | 10 | 71 | 279 | 290 | 479 | 1.19e-11 | 65.1 |
| MS.gene45089.t1 | AT5G64470 | 31.624 | 117 | 68 | 5 | 164 | 279 | 289 | 394 | 1.52e-11 | 64.7 |
| MS.gene45089.t1 | AT2G30010 | 26.484 | 219 | 135 | 10 | 71 | 279 | 237 | 439 | 2.79e-11 | 63.9 |
| MS.gene45089.t1 | AT2G30010 | 26.484 | 219 | 135 | 10 | 71 | 279 | 194 | 396 | 3.05e-11 | 63.9 |
| MS.gene45089.t1 | AT2G37720 | 31.933 | 119 | 61 | 3 | 162 | 279 | 383 | 482 | 3.47e-11 | 63.9 |
Find 66 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCTTAAAGCCTTTCTTAA+TGG | 0.091385 | 5.3:-23995207 | None:intergenic |
| TTCCATTAAGAAAGGCTTTA+AGG | 0.121836 | 5.3:+23995205 | MS.gene45089:CDS |
| TGCTTAAATTGTTCCGGTTT+CGG | 0.254274 | 5.3:+23995153 | MS.gene45089:CDS |
| GGTCTTAATTACACTGATAT+TGG | 0.285156 | 5.3:+23995174 | MS.gene45089:CDS |
| GTGACTACTTCAATGGAAAA+TGG | 0.286087 | 5.3:+23994611 | MS.gene45089:CDS |
| CAAACTACCTTTACTATAGA+TGG | 0.299980 | 5.3:+23994725 | MS.gene45089:CDS |
| TGTGTTCATTGGTGTTTGCC+TGG | 0.324131 | 5.3:+23995585 | MS.gene45089:CDS |
| GACTTGATTGTGTTATCGTT+TGG | 0.361764 | 5.3:+23995075 | MS.gene45089:CDS |
| CTTGGAAGATTGCACTCGTT+TGG | 0.369178 | 5.3:-23994751 | None:intergenic |
| TGTTCAAAGACTGAACCTTA+TGG | 0.369816 | 5.3:+23995342 | MS.gene45089:CDS |
| TTAGGATGCTTAAATTGTTC+CGG | 0.372597 | 5.3:+23995147 | MS.gene45089:CDS |
| AGATGATGAAGAAGTGGGAT+TGG | 0.380315 | 5.3:+23995640 | MS.gene45089:CDS |
| AGGGATTAGATTTGAGGTAA+TGG | 0.398286 | 5.3:+23995461 | MS.gene45089:CDS |
| AAATGGGAAGTGAGATTAGA+AGG | 0.398376 | 5.3:+23995388 | MS.gene45089:CDS |
| CCTTCGGTTTATTATGAGAA+TGG | 0.405122 | 5.3:+23995117 | MS.gene45089:CDS |
| TTGGTTTATTAATGTTCCTT+CGG | 0.408464 | 5.3:+23995101 | MS.gene45089:CDS |
| CATGTTGTTCCATTGTATAA+AGG | 0.411961 | 5.3:-23994652 | None:intergenic |
| GGTTTATTATGAGAATGGTT+TGG | 0.433915 | 5.3:+23995122 | MS.gene45089:CDS |
| TGCAAAATGATTGTGTTCAT+TGG | 0.437679 | 5.3:+23995574 | MS.gene45089:CDS |
| AGTGTAATTAAGACCGAAAC+CGG | 0.443307 | 5.3:-23995166 | None:intergenic |
| TTGTGTTATCGTTTGGCAAT+TGG | 0.445306 | 5.3:+23995082 | MS.gene45089:CDS |
| GTTGCTAAAGGGAATGGAAT+TGG | 0.445312 | 5.3:+23995258 | MS.gene45089:CDS |
| ACACCGTTAGCGAACGGAAA+AGG | 0.447241 | 5.3:-23995540 | None:intergenic |
| ATTTGGAGGGATTAGATTTG+AGG | 0.450014 | 5.3:+23995455 | MS.gene45089:CDS |
| AAATGTATTGTATTAAAACT+TGG | 0.452232 | 5.3:-23995009 | None:intergenic |
| AAGGATTGAGATTGAAGAAG+TGG | 0.457929 | 5.3:+23995407 | MS.gene45089:CDS |
| GACAAAATTGTATCTCCAAT+GGG | 0.458010 | 5.3:+23994692 | MS.gene45089:CDS |
| CACCCATGTGACTACTTCAA+TGG | 0.459804 | 5.3:+23994604 | MS.gene45089:CDS |
| GGTAATGGATGTAACTGAAT+TGG | 0.467735 | 5.3:+23995476 | MS.gene45089:CDS |
| TAAGCACCTGGATGACCATC+TGG | 0.468486 | 5.3:-23995510 | None:intergenic |
| ATGTCTCACTCTTCACTCCT+TGG | 0.471169 | 5.3:-23995672 | None:intergenic |
| GATGAAGAAGTGGGATTGGA+AGG | 0.471664 | 5.3:+23995644 | MS.gene45089:CDS |
| TTGAGAGGAAAGTTGCTAAA+GGG | 0.472700 | 5.3:+23995247 | MS.gene45089:CDS |
| ATCTCATTCCAAGTATCTAT+AGG | 0.478611 | 5.3:-23995609 | None:intergenic |
| TTGAGACCAGATGGTCATCC+AGG | 0.479603 | 5.3:+23995504 | MS.gene45089:CDS |
| GTGTTCATTGGTGTTTGCCT+GGG | 0.480611 | 5.3:+23995586 | MS.gene45089:CDS |
| TGCCTGGGCCTATAGATACT+TGG | 0.482132 | 5.3:+23995601 | MS.gene45089:CDS |
| GTATTGTATTAAAACTTGGC+CGG | 0.484999 | 5.3:-23995005 | None:intergenic |
| TAGTAAAGGTAGTTTGAGTC+AGG | 0.487516 | 5.3:-23994718 | None:intergenic |
| TATTGTATTAAAACTTGGCC+GGG | 0.496848 | 5.3:-23995004 | None:intergenic |
| TCTAGAGATGATGAAGAAGT+GGG | 0.498464 | 5.3:+23995635 | MS.gene45089:CDS |
| TTGGTTTCCATCTATAGTAA+AGG | 0.502522 | 5.3:-23994732 | None:intergenic |
| GGACAAAATTGTATCTCCAA+TGG | 0.512231 | 5.3:+23994691 | MS.gene45089:CDS |
| GATGGTGATTGGGATAAGGC+TGG | 0.512386 | 5.3:+23995315 | MS.gene45089:CDS |
| TTCTAGAGATGATGAAGAAG+TGG | 0.512711 | 5.3:+23995634 | MS.gene45089:CDS |
| AAGACTGAACCTTATGGAAA+GGG | 0.515408 | 5.3:+23995348 | MS.gene45089:CDS |
| AGGAAAGTTGCTAAAGGGAA+TGG | 0.518826 | 5.3:+23995252 | MS.gene45089:CDS |
| ATTGAGAGGAAAGTTGCTAA+AGG | 0.529202 | 5.3:+23995246 | MS.gene45089:CDS |
| GTGATGAAAGATCAAAATCC+CGG | 0.541463 | 5.3:+23994986 | MS.gene45089:CDS |
| AAAGACTGAACCTTATGGAA+AGG | 0.548583 | 5.3:+23995347 | MS.gene45089:CDS |
| CAAACGAGTGCAATCTTCCA+AGG | 0.563189 | 5.3:+23994752 | MS.gene45089:CDS |
| GTTTGAGTCAGGTCTCCCAT+TGG | 0.563671 | 5.3:-23994707 | None:intergenic |
| TTCCAAGTATCTATAGGCCC+AGG | 0.563711 | 5.3:-23995603 | None:intergenic |
| ACATGTGGAACAATCAAAGA+AGG | 0.566099 | 5.3:+23994670 | MS.gene45089:CDS |
| TTATACAATGGAACAACATG+TGG | 0.569031 | 5.3:+23994655 | MS.gene45089:CDS |
| ATGAAGAAGTGGGATTGGAA+GGG | 0.584115 | 5.3:+23995645 | MS.gene45089:CDS |
| TTCCATTGAAGTAGTCACAT+GGG | 0.602933 | 5.3:-23994606 | None:intergenic |
| TTTCCATTGAAGTAGTCACA+TGG | 0.607443 | 5.3:-23994607 | None:intergenic |
| CAATCACCATCAAAATGAGA+AGG | 0.616511 | 5.3:-23995303 | None:intergenic |
| TTCGGAACACCGTTAGCGAA+CGG | 0.617341 | 5.3:-23995546 | None:intergenic |
| AAAGGATTCATATAAGCACC+TGG | 0.621291 | 5.3:-23995522 | None:intergenic |
| GTCTTAATAGCATAATTGAG+AGG | 0.633582 | 5.3:+23995232 | MS.gene45089:CDS |
| TTGGCATTGTTGAGACCAGA+TGG | 0.642859 | 5.3:+23995495 | MS.gene45089:CDS |
| GGGATTGGAAGGGACAGCCA+AGG | 0.651431 | 5.3:+23995655 | MS.gene45089:CDS |
| CCATTCTCATAATAAACCGA+AGG | 0.655142 | 5.3:-23995117 | None:intergenic |
| AAATTGGCGAAGGATATGGA+TGG | 0.672881 | 5.3:+23995048 | MS.gene45089:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTATTGTATTAAAACT+TGG | - | chr5.3:23995012-23995031 | None:intergenic | 15.0% |
| !!! | AAGTTTTAATACAATACATT+TGG | + | chr5.3:23995011-23995030 | MS.gene45089:CDS | 15.0% |
| !! | GAGAAAAAAATTGGAAAAAT+GGG | + | chr5.3:23995372-23995391 | MS.gene45089:CDS | 20.0% |
| !! | TGAGAAAAAAATTGGAAAAA+TGG | + | chr5.3:23995371-23995390 | MS.gene45089:CDS | 20.0% |
| !!! | TTTTTATGTTCCATTAAGAA+AGG | + | chr5.3:23995197-23995216 | MS.gene45089:CDS | 20.0% |
| ! | AAAAAAGGTCCTTTATACAA+TGG | + | chr5.3:23994643-23994662 | MS.gene45089:CDS | 25.0% |
| ! | AAATGCTAAGAAAAAAGCAA+AGG | + | chr5.3:23995431-23995450 | MS.gene45089:CDS | 25.0% |
| ! | AAGAAAAAAGCAAAGGAATT+TGG | + | chr5.3:23995438-23995457 | MS.gene45089:CDS | 25.0% |
| ! | TTGGTTTATTAATGTTCCTT+CGG | + | chr5.3:23995101-23995120 | MS.gene45089:CDS | 25.0% |
| !! | AAATGGATTCATGACAAAAA+AGG | + | chr5.3:23994628-23994647 | MS.gene45089:CDS | 25.0% |
| !! | AACAAACACATATCTTTTGT+TGG | + | chr5.3:23994808-23994827 | MS.gene45089:intron | 25.0% |
| AAAAAAGCAAAGGAATTTGG+AGG | + | chr5.3:23995441-23995460 | MS.gene45089:CDS | 30.0% | |
| AAAAAGCAAAGGAATTTGGA+GGG | + | chr5.3:23995442-23995461 | MS.gene45089:CDS | 30.0% | |
| AACTGTTTCAAAACCTAAAC+CGG | + | chr5.3:23994879-23994898 | MS.gene45089:intron | 30.0% | |
| ATCTCATTCCAAGTATCTAT+AGG | - | chr5.3:23995612-23995631 | None:intergenic | 30.0% | |
| CAAACTACCTTTACTATAGA+TGG | + | chr5.3:23994725-23994744 | MS.gene45089:CDS | 30.0% | |
| CATGTTGTTCCATTGTATAA+AGG | - | chr5.3:23994655-23994674 | None:intergenic | 30.0% | |
| GACAAAATTGTATCTCCAAT+GGG | + | chr5.3:23994692-23994711 | MS.gene45089:CDS | 30.0% | |
| GGTCTTAATTACACTGATAT+TGG | + | chr5.3:23995174-23995193 | MS.gene45089:CDS | 30.0% | |
| GGTTTATTATGAGAATGGTT+TGG | + | chr5.3:23995122-23995141 | MS.gene45089:CDS | 30.0% | |
| GTATTGTATTAAAACTTGGC+CGG | - | chr5.3:23995008-23995027 | None:intergenic | 30.0% | |
| GTCTTAATAGCATAATTGAG+AGG | + | chr5.3:23995232-23995251 | MS.gene45089:CDS | 30.0% | |
| TACAAAGAAGAGACTCAAAT+TGG | - | chr5.3:23994852-23994871 | None:intergenic | 30.0% | |
| TATTGTATTAAAACTTGGCC+GGG | - | chr5.3:23995007-23995026 | None:intergenic | 30.0% | |
| TGCAAAATGATTGTGTTCAT+TGG | + | chr5.3:23995574-23995593 | MS.gene45089:CDS | 30.0% | |
| TTAGGATGCTTAAATTGTTC+CGG | + | chr5.3:23995147-23995166 | MS.gene45089:CDS | 30.0% | |
| TTATACAATGGAACAACATG+TGG | + | chr5.3:23994655-23994674 | MS.gene45089:CDS | 30.0% | |
| TTCCATTAAGAAAGGCTTTA+AGG | + | chr5.3:23995205-23995224 | MS.gene45089:CDS | 30.0% | |
| TTGGTTTCCATCTATAGTAA+AGG | - | chr5.3:23994735-23994754 | None:intergenic | 30.0% | |
| ! | CAATCATTTTGCACATACTT+CGG | - | chr5.3:23995567-23995586 | None:intergenic | 30.0% |
| !!! | TATGAGAATGGTTTGGTTTT+AGG | + | chr5.3:23995129-23995148 | MS.gene45089:CDS | 30.0% |
| !!! | TGTGTTTGTTTTTGCTTAGT+TGG | - | chr5.3:23994798-23994817 | None:intergenic | 30.0% |
| !!! | TTCTCATTTTGATGGTGATT+GGG | + | chr5.3:23995305-23995324 | MS.gene45089:CDS | 30.0% |
| AAAGACTGAACCTTATGGAA+AGG | + | chr5.3:23995347-23995366 | MS.gene45089:CDS | 35.0% | |
| AAAGGATTCATATAAGCACC+TGG | - | chr5.3:23995525-23995544 | None:intergenic | 35.0% | |
| AAATGGGAAGTGAGATTAGA+AGG | + | chr5.3:23995388-23995407 | MS.gene45089:CDS | 35.0% | |
| AAGACTGAACCTTATGGAAA+GGG | + | chr5.3:23995348-23995367 | MS.gene45089:CDS | 35.0% | |
| AAGGATTGAGATTGAAGAAG+TGG | + | chr5.3:23995407-23995426 | MS.gene45089:CDS | 35.0% | |
| ACATGTGGAACAATCAAAGA+AGG | + | chr5.3:23994670-23994689 | MS.gene45089:CDS | 35.0% | |
| AGTGTAATTAAGACCGAAAC+CGG | - | chr5.3:23995169-23995188 | None:intergenic | 35.0% | |
| ATGCAACATTATCCGTGTAT+TGG | + | chr5.3:23994944-23994963 | MS.gene45089:intron | 35.0% | |
| ATTGAGAGGAAAGTTGCTAA+AGG | + | chr5.3:23995246-23995265 | MS.gene45089:CDS | 35.0% | |
| ATTTGGAGGGATTAGATTTG+AGG | + | chr5.3:23995455-23995474 | MS.gene45089:CDS | 35.0% | |
| CAATCACCATCAAAATGAGA+AGG | - | chr5.3:23995306-23995325 | None:intergenic | 35.0% | |
| CCATTCTCATAATAAACCGA+AGG | - | chr5.3:23995120-23995139 | None:intergenic | 35.0% | |
| CCTTCGGTTTATTATGAGAA+TGG | + | chr5.3:23995117-23995136 | MS.gene45089:CDS | 35.0% | |
| GACTTGATTGTGTTATCGTT+TGG | + | chr5.3:23995075-23995094 | MS.gene45089:CDS | 35.0% | |
| GGAAAGGGTGAGAAAAAAAT+TGG | + | chr5.3:23995363-23995382 | MS.gene45089:CDS | 35.0% | |
| GGACAAAATTGTATCTCCAA+TGG | + | chr5.3:23994691-23994710 | MS.gene45089:CDS | 35.0% | |
| GTCCTTAAAGCCTTTCTTAA+TGG | - | chr5.3:23995210-23995229 | None:intergenic | 35.0% | |
| GTGACTACTTCAATGGAAAA+TGG | + | chr5.3:23994611-23994630 | MS.gene45089:CDS | 35.0% | |
| GTGATGAAAGATCAAAATCC+CGG | + | chr5.3:23994986-23995005 | MS.gene45089:CDS | 35.0% | |
| TAGTAAAGGTAGTTTGAGTC+AGG | - | chr5.3:23994721-23994740 | None:intergenic | 35.0% | |
| TCTAGAGATGATGAAGAAGT+GGG | + | chr5.3:23995635-23995654 | MS.gene45089:CDS | 35.0% | |
| TGCTTAAATTGTTCCGGTTT+CGG | + | chr5.3:23995153-23995172 | MS.gene45089:CDS | 35.0% | |
| TGTTCAAAGACTGAACCTTA+TGG | + | chr5.3:23995342-23995361 | MS.gene45089:CDS | 35.0% | |
| TTCCATTGAAGTAGTCACAT+GGG | - | chr5.3:23994609-23994628 | None:intergenic | 35.0% | |
| TTGAGAGGAAAGTTGCTAAA+GGG | + | chr5.3:23995247-23995266 | MS.gene45089:CDS | 35.0% | |
| TTGTGTTATCGTTTGGCAAT+TGG | + | chr5.3:23995082-23995101 | MS.gene45089:CDS | 35.0% | |
| TTTCCATTGAAGTAGTCACA+TGG | - | chr5.3:23994610-23994629 | None:intergenic | 35.0% | |
| ! | AAAGTGTTTGGTTCAAACCT+TGG | - | chr5.3:23994772-23994791 | None:intergenic | 35.0% |
| ! | AGGGATTAGATTTGAGGTAA+TGG | + | chr5.3:23995461-23995480 | MS.gene45089:CDS | 35.0% |
| ! | TTCTAGAGATGATGAAGAAG+TGG | + | chr5.3:23995634-23995653 | MS.gene45089:CDS | 35.0% |
| ! | TTTTCGCCTTCTCATTTTGA+TGG | + | chr5.3:23995297-23995316 | MS.gene45089:CDS | 35.0% |
| ! | TTTTTCTCACCCTTTCCATA+AGG | - | chr5.3:23995360-23995379 | None:intergenic | 35.0% |
| !! | CTTAGTTGGAGAAAAGTGTT+TGG | - | chr5.3:23994784-23994803 | None:intergenic | 35.0% |
| !! | GGTAATGGATGTAACTGAAT+TGG | + | chr5.3:23995476-23995495 | MS.gene45089:CDS | 35.0% |
| !!! | CTTCTCATTTTGATGGTGAT+TGG | + | chr5.3:23995304-23995323 | MS.gene45089:CDS | 35.0% |
| !!! | TTTTGATGGTGATTGGGATA+AGG | + | chr5.3:23995311-23995330 | MS.gene45089:CDS | 35.0% |
| AAATTGGCGAAGGATATGGA+TGG | + | chr5.3:23995048-23995067 | MS.gene45089:CDS | 40.0% | |
| AAGAAATGGCGACCAATACA+CGG | - | chr5.3:23994959-23994978 | None:intergenic | 40.0% | |
| ACCAATGTGAACCTTTATGG+TGG | - | chr5.3:23994906-23994925 | None:intergenic | 40.0% | |
| ACCATAAAGGTTCACATTGG+TGG | + | chr5.3:23994905-23994924 | MS.gene45089:intron | 40.0% | |
| AGATGATGAAGAAGTGGGAT+TGG | + | chr5.3:23995640-23995659 | MS.gene45089:CDS | 40.0% | |
| AGGAAAGTTGCTAAAGGGAA+TGG | + | chr5.3:23995252-23995271 | MS.gene45089:CDS | 40.0% | |
| ATGAAGAAGTGGGATTGGAA+GGG | + | chr5.3:23995645-23995664 | MS.gene45089:CDS | 40.0% | |
| CGAAAAATTGGCGAAGGATA+TGG | + | chr5.3:23995044-23995063 | MS.gene45089:CDS | 40.0% | |
| CGTTAACGAAAAATTGGCGA+AGG | + | chr5.3:23995038-23995057 | MS.gene45089:CDS | 40.0% | |
| GGATCGCGTTAACGAAAAAT+TGG | + | chr5.3:23995032-23995051 | MS.gene45089:CDS | 40.0% | |
| GTTGCTAAAGGGAATGGAAT+TGG | + | chr5.3:23995258-23995277 | MS.gene45089:CDS | 40.0% | |
| TCATCACCTTGCACAAGAAA+TGG | - | chr5.3:23994973-23994992 | None:intergenic | 40.0% | |
| TCCACCATAAAGGTTCACAT+TGG | + | chr5.3:23994902-23994921 | MS.gene45089:intron | 40.0% | |
| ! | AATCCTTTTCCGTTCGCTAA+CGG | + | chr5.3:23995537-23995556 | MS.gene45089:CDS | 40.0% |
| CAAACGAGTGCAATCTTCCA+AGG | + | chr5.3:23994752-23994771 | MS.gene45089:CDS | 45.0% | |
| CACCCATGTGACTACTTCAA+TGG | + | chr5.3:23994604-23994623 | MS.gene45089:CDS | 45.0% | |
| CTTGGAAGATTGCACTCGTT+TGG | - | chr5.3:23994754-23994773 | None:intergenic | 45.0% | |
| GATGAAGAAGTGGGATTGGA+AGG | + | chr5.3:23995644-23995663 | MS.gene45089:CDS | 45.0% | |
| GCCACCAATGTGAACCTTTA+TGG | - | chr5.3:23994909-23994928 | None:intergenic | 45.0% | |
| TTCCAAGTATCTATAGGCCC+AGG | - | chr5.3:23995606-23995625 | None:intergenic | 45.0% | |
| TTGGCATTGTTGAGACCAGA+TGG | + | chr5.3:23995495-23995514 | MS.gene45089:CDS | 45.0% | |
| ! | GTGTTCATTGGTGTTTGCCT+GGG | + | chr5.3:23995586-23995605 | MS.gene45089:CDS | 45.0% |
| ! | TGTGTTCATTGGTGTTTGCC+TGG | + | chr5.3:23995585-23995604 | MS.gene45089:CDS | 45.0% |
| !! | TGTGAACCTTTATGGTGGAC+CGG | - | chr5.3:23994901-23994920 | None:intergenic | 45.0% |
| ACACCGTTAGCGAACGGAAA+AGG | - | chr5.3:23995543-23995562 | None:intergenic | 50.0% | |
| CCTAAACCGGTCCACCATAA+AGG | + | chr5.3:23994892-23994911 | MS.gene45089:intron | 50.0% | |
| GATGGTGATTGGGATAAGGC+TGG | + | chr5.3:23995315-23995334 | MS.gene45089:CDS | 50.0% | |
| GTTTGAGTCAGGTCTCCCAT+TGG | - | chr5.3:23994710-23994729 | None:intergenic | 50.0% | |
| TAAGCACCTGGATGACCATC+TGG | - | chr5.3:23995513-23995532 | None:intergenic | 50.0% | |
| TGCCTGGGCCTATAGATACT+TGG | + | chr5.3:23995601-23995620 | MS.gene45089:CDS | 50.0% | |
| TGGTCGCCATTTCTTGTGCA+AGG | + | chr5.3:23994964-23994983 | MS.gene45089:intron | 50.0% | |
| TTCGGAACACCGTTAGCGAA+CGG | - | chr5.3:23995549-23995568 | None:intergenic | 50.0% | |
| TTGAGACCAGATGGTCATCC+AGG | + | chr5.3:23995504-23995523 | MS.gene45089:CDS | 50.0% | |
| !! | CCTTTATGGTGGACCGGTTT+AGG | - | chr5.3:23994895-23994914 | None:intergenic | 50.0% |
| GGGATTGGAAGGGACAGCCA+AGG | + | chr5.3:23995655-23995674 | MS.gene45089:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 23994599 | 23995689 | 23994599 | ID=MS.gene45089 |
| chr5.3 | mRNA | 23994599 | 23995689 | 23994599 | ID=MS.gene45089.t1;Parent=MS.gene45089 |
| chr5.3 | exon | 23994599 | 23994773 | 23994599 | ID=MS.gene45089.t1.exon1;Parent=MS.gene45089.t1 |
| chr5.3 | CDS | 23994599 | 23994773 | 23994599 | ID=cds.MS.gene45089.t1;Parent=MS.gene45089.t1 |
| chr5.3 | exon | 23994986 | 23995689 | 23994986 | ID=MS.gene45089.t1.exon2;Parent=MS.gene45089.t1 |
| chr5.3 | CDS | 23994986 | 23995689 | 23994986 | ID=cds.MS.gene45089.t1;Parent=MS.gene45089.t1 |
| Gene Sequence |
| Protein sequence |
