AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45091


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45091.t1 MTR_5g035090 95.950 321 13 0 1 321 114 434 0.0 654
MS.gene45091.t1 MTR_5g035070 77.370 327 72 2 1 325 118 444 0.0 525
MS.gene45091.t1 MTR_5g035150 70.625 320 92 2 1 318 116 435 5.21e-170 479
MS.gene45091.t1 MTR_5g035080 66.265 332 101 5 1 325 106 433 1.38e-157 448
MS.gene45091.t1 MTR_3g109840 62.462 325 113 4 1 321 103 422 7.68e-152 433
MS.gene45091.t1 MTR_8g104970 60.625 320 117 5 1 315 151 466 1.46e-140 406
MS.gene45091.t1 MTR_7g033230 57.944 321 126 5 1 316 295 611 1.99e-134 395
MS.gene45091.t1 MTR_7g033230 57.944 321 126 5 1 316 365 681 1.40e-133 395
MS.gene45091.t1 MTR_5g035140 61.887 265 92 5 57 316 7 267 6.28e-120 346
MS.gene45091.t1 MTR_6g016880 41.742 333 175 9 1 325 109 430 7.12e-90 275
MS.gene45091.t1 MTR_8g027900 43.125 320 170 7 1 314 242 555 3.98e-88 275
MS.gene45091.t1 MTR_7g019120 39.577 331 183 9 1 325 110 429 2.20e-84 261
MS.gene45091.t1 MTR_8g099300 42.056 321 173 8 1 314 105 419 7.70e-84 259
MS.gene45091.t1 MTR_6g007777 38.769 325 185 7 3 322 150 465 8.38e-79 248
MS.gene45091.t1 MTR_2g016060 38.906 329 177 11 1 316 85 402 3.61e-74 234
MS.gene45091.t1 MTR_6g016875 40.248 323 177 9 1 315 95 409 1.04e-73 233
MS.gene45091.t1 MTR_1g076690 36.858 331 178 11 3 316 256 572 7.97e-60 201
MS.gene45091.t1 MTR_6g061710 34.940 332 183 10 3 316 200 516 4.69e-56 190
MS.gene45091.t1 MTR_7g094750 31.722 331 189 15 3 316 124 434 4.06e-41 149
MS.gene45091.t1 MTR_2g022560 33.433 335 181 14 3 318 130 441 6.41e-41 148
MS.gene45091.t1 MTR_1g058380 31.611 329 189 12 3 316 90 397 2.84e-40 145
MS.gene45091.t1 MTR_5g071350 30.218 321 195 11 3 310 91 395 1.19e-35 133
MS.gene45091.t1 MTR_4g126950 32.523 329 181 14 3 314 142 446 1.24e-35 134
MS.gene45091.t1 MTR_0136s0010 32.440 336 183 16 1 316 201 512 1.75e-35 135
MS.gene45091.t1 MTR_4g121560 28.743 334 188 12 3 314 148 453 1.86e-35 134
MS.gene45091.t1 MTR_4g125060 31.832 333 175 13 5 314 168 471 8.92e-35 132
MS.gene45091.t1 MTR_4g125060 31.707 328 182 12 5 314 207 510 9.67e-35 132
MS.gene45091.t1 MTR_8g093530 30.769 338 188 13 1 324 121 426 1.11e-34 131
MS.gene45091.t1 MTR_4g125060 31.832 333 175 13 5 314 236 539 1.30e-34 132
MS.gene45091.t1 MTR_8g069790 29.730 333 192 14 3 317 211 519 1.32e-34 132
MS.gene45091.t1 MTR_4g014440 30.699 329 192 12 4 314 97 407 3.29e-34 129
MS.gene45091.t1 MTR_3g464570 31.776 321 180 14 4 310 77 372 5.00e-34 128
MS.gene45091.t1 MTR_5g033800 28.614 332 195 12 3 316 178 485 1.56e-33 129
MS.gene45091.t1 MTR_7g093450 31.193 327 186 13 1 310 279 583 1.07e-32 127
MS.gene45091.t1 MTR_7g070060 29.697 330 196 13 3 314 98 409 8.10e-32 123
MS.gene45091.t1 MTR_4g016940 29.630 324 204 10 1 314 118 427 1.06e-31 123
MS.gene45091.t1 MTR_7g068920 30.462 325 200 12 1 314 112 421 1.87e-31 122
MS.gene45091.t1 MTR_4g087730 31.190 311 179 12 4 310 79 358 1.07e-30 119
MS.gene45091.t1 MTR_8g093870 27.811 338 182 13 5 314 169 472 4.47e-30 119
MS.gene45091.t1 MTR_5g059400 28.863 343 200 15 3 323 208 528 4.48e-30 120
MS.gene45091.t1 MTR_1g116130 28.863 343 200 15 3 323 208 528 4.48e-30 120
MS.gene45091.t1 MTR_7g109550 30.189 318 190 14 3 311 170 464 6.21e-30 119
MS.gene45091.t1 MTR_3g090120 29.518 332 190 11 1 319 164 464 6.93e-30 119
MS.gene45091.t1 MTR_2g091175 31.511 311 179 14 3 310 83 362 1.15e-29 116
MS.gene45091.t1 MTR_4g088030 30.868 311 180 12 4 310 67 346 1.35e-29 116
MS.gene45091.t1 MTR_3g070900 28.529 333 190 14 1 310 138 445 1.64e-29 117
MS.gene45091.t1 MTR_3g021060 29.231 325 185 14 1 316 77 365 5.64e-29 114
MS.gene45091.t1 MTR_8g463790 26.048 334 204 8 1 316 103 411 6.32e-29 115
MS.gene45091.t1 MTR_5g083260 26.875 320 208 10 3 311 117 421 9.55e-28 112
MS.gene45091.t1 MTR_1g050448 29.375 320 189 13 3 314 85 375 9.95e-28 111
MS.gene45091.t1 MTR_2g073510 28.165 316 196 11 2 314 66 353 4.15e-27 109
MS.gene45091.t1 MTR_3g035830 28.571 322 187 11 1 314 62 348 7.88e-27 108
MS.gene45091.t1 MTR_3g071650 28.395 324 198 13 3 311 123 427 1.70e-26 108
MS.gene45091.t1 MTR_2g015720 29.260 311 187 11 3 310 74 354 1.93e-26 107
MS.gene45091.t1 MTR_6g016240 27.301 326 193 11 9 312 111 414 2.40e-26 108
MS.gene45091.t1 MTR_1g112210 27.103 321 188 12 3 310 91 378 2.92e-26 107
MS.gene45091.t1 MTR_3g049330 27.885 312 192 8 3 310 64 346 9.66e-26 105
MS.gene45091.t1 MTR_3g021090 29.358 327 170 14 1 310 62 344 1.39e-25 106
MS.gene45091.t1 MTR_7g094750 33.486 218 120 9 3 206 124 330 1.82e-25 104
MS.gene45091.t1 MTR_1g112210 26.332 319 180 12 3 310 91 365 4.82e-25 103
MS.gene45091.t1 MTR_2g073500 28.115 313 185 11 1 310 66 341 1.90e-24 102
MS.gene45091.t1 MTR_4g079700 29.338 317 186 14 3 314 80 363 4.92e-24 101
MS.gene45091.t1 MTR_1g111010 28.254 315 187 11 1 314 65 341 2.25e-23 99.0
MS.gene45091.t1 MTR_5g034810 27.974 311 191 11 4 310 67 348 2.40e-23 99.0
MS.gene45091.t1 MTR_4g102570 44.355 124 55 5 86 202 2 118 2.91e-23 94.4
MS.gene45091.t1 MTR_5g082880 26.254 339 206 13 1 316 197 514 2.61e-22 97.4
MS.gene45091.t1 MTR_5g035120 66.667 60 20 0 1 60 106 165 3.44e-22 92.0
MS.gene45091.t1 MTR_7g070060 28.296 311 187 13 22 314 15 307 5.87e-22 94.4
MS.gene45091.t1 MTR_4g014430 25.758 330 202 12 3 314 142 446 6.33e-22 96.3
MS.gene45091.t1 MTR_4g092830 24.848 330 191 11 13 314 92 392 8.50e-22 95.5
MS.gene45091.t1 MTR_3g464570 29.655 290 165 14 35 310 4 268 1.36e-21 92.8
MS.gene45091.t1 MTR_7g117160 31.797 217 92 8 97 313 29 189 1.34e-20 88.2
MS.gene45091.t1 MTR_5g033800 31.183 186 105 6 3 175 178 353 1.96e-20 91.3
MS.gene45091.t1 MTR_7g019140 54.237 59 27 0 1 59 110 168 2.86e-19 84.0
MS.gene45091.t1 MTR_7g019130 32.031 128 78 4 88 209 1 125 1.04e-17 79.0
MS.gene45091.t1 MTR_7g070060 34.228 149 85 5 3 143 98 241 2.29e-17 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45091.t1 AT1G70230 58.176 318 117 5 3 318 112 415 3.37e-138 398
MS.gene45091.t1 AT1G01430 41.088 331 181 7 1 322 130 455 8.29e-86 266
MS.gene45091.t1 AT4G01080 43.077 325 170 10 1 320 122 436 5.11e-85 263
MS.gene45091.t1 AT5G15890 42.587 317 169 7 1 315 218 523 6.90e-85 265
MS.gene45091.t1 AT4G23790 41.615 322 175 8 1 314 111 427 1.30e-81 254
MS.gene45091.t1 AT5G15900 39.634 328 180 10 1 320 98 415 1.71e-81 253
MS.gene45091.t1 AT5G15900 39.634 328 180 10 1 320 117 434 3.26e-81 253
MS.gene45091.t1 AT3G02440 39.564 321 179 7 1 315 158 469 1.18e-80 253
MS.gene45091.t1 AT3G02440 39.564 321 179 7 1 315 166 477 1.28e-80 253
MS.gene45091.t1 AT4G11090 42.593 324 167 8 1 314 111 425 4.36e-80 250
MS.gene45091.t1 AT3G28150 39.506 324 176 10 1 316 101 412 4.71e-78 244
MS.gene45091.t1 AT4G25360 35.976 328 187 9 3 316 208 526 4.13e-58 196
MS.gene45091.t1 AT4G25360 35.976 328 187 9 3 316 208 526 4.13e-58 196
MS.gene45091.t1 AT5G51640 34.557 327 194 9 3 316 171 490 6.68e-56 189
MS.gene45091.t1 AT5G19160 32.432 333 202 10 4 323 133 455 1.95e-42 152
MS.gene45091.t1 AT3G06080 33.628 339 188 16 4 325 137 455 3.31e-42 152
MS.gene45091.t1 AT3G11570 32.416 327 180 14 1 310 113 415 1.02e-39 145
MS.gene45091.t1 AT5G64020 31.250 336 187 13 4 314 92 408 3.13e-38 140
MS.gene45091.t1 AT2G14530 30.699 329 182 11 8 314 102 406 5.51e-37 137
MS.gene45091.t1 AT5G06230 33.642 324 176 15 3 310 60 360 1.00e-36 135
MS.gene45091.t1 AT3G12060 31.098 328 185 14 1 310 227 531 1.39e-36 138
MS.gene45091.t1 AT5G06230 33.642 324 176 15 3 310 101 401 2.60e-36 135
MS.gene45091.t1 AT2G30010 31.928 332 182 13 2 314 90 396 4.02e-36 134
MS.gene45091.t1 AT2G30010 31.928 332 182 13 2 314 133 439 5.60e-36 135
MS.gene45091.t1 AT5G20590 32.110 327 177 13 3 310 175 475 1.28e-35 134
MS.gene45091.t1 AT1G48880 32.121 330 166 13 1 311 146 436 3.23e-35 133
MS.gene45091.t1 AT5G06700 31.563 339 198 17 1 324 286 605 1.27e-34 133
MS.gene45091.t1 AT5G58600 30.031 323 193 12 3 314 100 400 2.02e-33 127
MS.gene45091.t1 AT2G37720 29.483 329 184 12 4 311 178 479 2.74e-33 128
MS.gene45091.t1 AT5G49340 28.267 329 199 11 3 314 133 441 4.70e-33 127
MS.gene45091.t1 AT2G38320 28.144 334 194 13 4 314 11 321 1.41e-32 123
MS.gene45091.t1 AT1G60790 28.446 341 187 14 2 315 224 534 1.78e-32 127
MS.gene45091.t1 AT2G38320 28.144 334 194 13 4 314 94 404 7.84e-32 123
MS.gene45091.t1 AT3G14850 28.115 313 191 10 3 310 67 350 2.45e-30 118
MS.gene45091.t1 AT2G40160 27.485 342 194 14 3 316 111 426 2.64e-30 119
MS.gene45091.t1 AT2G40160 26.866 335 192 13 3 310 111 419 4.02e-30 119
MS.gene45091.t1 AT5G01360 27.660 329 199 13 1 311 68 375 6.16e-30 117
MS.gene45091.t1 AT3G11030 26.911 327 202 10 2 311 139 445 1.15e-29 118
MS.gene45091.t1 AT5G01360 27.928 333 193 14 1 311 124 431 1.82e-29 117
MS.gene45091.t1 AT3G62390 28.788 330 195 14 2 316 170 474 4.68e-29 116
MS.gene45091.t1 AT1G73140 28.571 329 186 14 3 310 101 401 7.32e-29 115
MS.gene45091.t1 AT2G30900 28.617 311 196 8 2 310 75 361 9.56e-29 114
MS.gene45091.t1 AT2G31110 29.747 316 177 16 4 310 79 358 1.03e-28 114
MS.gene45091.t1 AT5G64470 29.193 322 181 12 13 314 100 394 3.33e-28 113
MS.gene45091.t1 AT2G42570 29.907 321 180 16 3 314 80 364 3.41e-28 112
MS.gene45091.t1 AT2G40320 28.487 337 181 17 3 311 115 419 3.76e-28 113
MS.gene45091.t1 AT2G34070 28.076 317 196 12 1 314 96 383 3.79e-28 112
MS.gene45091.t1 AT5G20680 28.659 328 192 12 5 314 154 457 1.35e-27 112
MS.gene45091.t1 AT3G55990 28.190 337 199 13 1 316 172 486 2.63e-27 111
MS.gene45091.t1 AT5G20680 28.659 328 192 12 5 314 230 533 3.62e-27 111
MS.gene45091.t1 AT5G20680 28.659 328 192 12 5 314 248 551 3.80e-27 111
MS.gene45091.t1 AT5G20680 28.659 328 192 12 5 314 248 551 3.80e-27 111
MS.gene45091.t1 AT5G20680 28.659 328 192 12 5 314 248 551 3.80e-27 111
MS.gene45091.t1 AT5G20680 28.659 328 192 12 5 314 248 551 3.80e-27 111
MS.gene45091.t1 AT1G29050 29.102 323 184 12 1 314 92 378 1.04e-26 108
MS.gene45091.t1 AT5G64470 28.659 328 181 13 13 314 100 400 1.33e-26 108
MS.gene45091.t1 AT1G78710 29.375 320 183 13 4 314 71 356 1.13e-25 105
MS.gene45091.t1 AT5G19160 34.286 210 121 7 4 203 133 335 2.47e-25 104
MS.gene45091.t1 AT2G40150 26.879 346 198 15 1 316 103 423 2.32e-24 102
MS.gene45091.t1 AT5G01620 25.305 328 206 12 3 314 145 449 9.72e-24 101
MS.gene45091.t1 AT5G01620 25.305 328 206 12 3 314 145 449 9.72e-24 101
MS.gene45091.t1 AT5G01620 25.305 328 206 12 3 314 153 457 1.11e-23 101
MS.gene45091.t1 AT3G06080 34.272 213 119 9 4 204 137 340 1.23e-23 99.8
MS.gene45091.t1 AT3G54260 26.748 329 187 15 3 314 83 374 1.64e-23 100
MS.gene45091.t1 AT5G06230 33.953 215 119 11 3 204 101 305 2.06e-21 93.2
MS.gene45091.t1 AT5G58600 31.373 204 122 7 3 202 100 289 7.89e-21 90.9
MS.gene45091.t1 AT5G20590 32.620 187 102 6 3 175 175 351 8.00e-21 92.4
MS.gene45091.t1 AT2G40160 30.319 188 103 5 3 175 111 285 1.98e-19 87.4
MS.gene45091.t1 AT2G31110 33.333 168 94 6 4 159 79 240 1.71e-17 81.3
MS.gene45091.t1 AT3G62390 28.111 217 131 8 2 205 170 374 1.99e-17 82.8
MS.gene45091.t1 AT3G14850 25.455 275 171 10 41 310 2 247 1.06e-16 79.0
MS.gene45091.t1 AT2G30900 31.788 151 97 3 2 151 75 220 2.21e-16 78.2
MS.gene45091.t1 AT1G78710 41.489 94 54 1 4 97 64 156 6.22e-14 71.6
MS.gene45091.t1 AT5G64470 26.957 230 138 9 13 225 100 316 2.86e-12 67.0
MS.gene45091.t1 AT5G64470 27.803 223 131 9 13 218 100 309 4.85e-12 66.2

Find 67 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTAATTACACTGAAAT+AGG 0.136015 5.3:-24010288 MS.gene45091:CDS
TTCAAATATAGCTCATTATT+TGG 0.139372 5.3:+24010438 None:intergenic
TCCTATCAATTATGCTATTA+AGG 0.141791 5.3:+24010229 None:intergenic
ATGTATTAAGAAAGGCTTTA+AGG 0.169604 5.3:-24010257 MS.gene45091:CDS
ATTGATTGTCCTTGCCATTT+TGG 0.188794 5.3:+24010553 None:intergenic
AGTATTGGATGTAACAAAAT+TGG 0.211311 5.3:-24009986 MS.gene45091:CDS
TTTCTATAAGGCTTAGTCTT+TGG 0.240548 5.3:+24010117 None:intergenic
AATTGATAGGAGAGGGAATA+AGG 0.252392 5.3:-24010217 MS.gene45091:CDS
TTCTTCTCTCCATTTCTATA+AGG 0.257035 5.3:+24010105 None:intergenic
AAAGCCAAAGGCAATGAATT+TGG 0.260071 5.3:-24010024 MS.gene45091:CDS
CTTAGTTGGAGAAAAGTAAT+TGG 0.278320 5.3:+24010678 None:intergenic
CCTAAACTTGTGTACCAAAA+TGG 0.283772 5.3:-24010567 MS.gene45091:CDS
TACAAAGAAGAGACTCTAAT+TGG 0.322908 5.3:+24010610 None:intergenic
GTCTTAATTACACTGAAATA+GGG 0.334111 5.3:-24010287 MS.gene45091:CDS
CTTTCCAAATTCATTGCCTT+TGG 0.341956 5.3:+24010020 None:intergenic
ATTCAACTATTTCCTTGTAT+TGG 0.358515 5.3:-24010503 MS.gene45091:CDS
AATGGAAAAGGGTTCATATA+AGG 0.359801 5.3:+24009934 None:intergenic
TGTGTTTGTTCTTACTTAGT+TGG 0.369018 5.3:+24010664 None:intergenic
TGAATCATGTTGATGAGAAA+TGG 0.370491 5.3:-24010419 MS.gene45091:CDS
TGTGTTCATTGGTGTTTGCC+TGG 0.372187 5.3:-24009877 MS.gene45091:CDS
AAGACTAAGCCTTATAGAAA+TGG 0.384572 5.3:-24010114 MS.gene45091:CDS
GACATGATTGTACTATCAAT+TGG 0.399358 5.3:-24010375 MS.gene45091:CDS
CCTATCAATTATGCTATTAA+GGG 0.403903 5.3:+24010230 None:intergenic
ACCCCATTAAAGAATGGAAA+AGG 0.407132 5.3:+24009922 None:intergenic
AAAGTAATTGGTTCAAACCT+TGG 0.414515 5.3:+24010690 None:intergenic
AAAGTTAAGATTTGAAGTAT+TGG 0.417492 5.3:-24010001 MS.gene45091:CDS
TTGACTATCTTTATTGGAGA+TGG 0.423356 5.3:-24010734 MS.gene45091:CDS
ATAGTACAATCATGTCCATT+TGG 0.433551 5.3:+24010382 None:intergenic
TGCAAAATGATTGTGTTCAT+TGG 0.437679 5.3:-24009888 MS.gene45091:CDS
CAATAAAGATAGTCAAAATC+AGG 0.440358 5.3:+24010741 None:intergenic
ACACTTCATTCTTCACTCCT+AGG 0.443349 5.3:+24009796 None:intergenic
GAATCATGTTGATGAGAAAT+GGG 0.457430 5.3:-24010418 MS.gene45091:CDS
TAAGGACCTGGATGACCATC+TGG 0.461971 5.3:+24009952 None:intergenic
GGCAAAAGATATGCACCAAA+TGG 0.462882 5.3:-24010397 MS.gene45091:CDS
AATGGAGAGAAGAAAGTTGA+AGG 0.470023 5.3:-24010096 MS.gene45091:CDS
TTTAGAAATTATAAAGAAGT+GGG 0.470803 5.3:-24009827 MS.gene45091:CDS
ATCTCATTCCATGTATCAAT+CGG 0.477028 5.3:+24009853 None:intergenic
TTAAGACCAGATGGTCATCC+AGG 0.486939 5.3:-24009958 MS.gene45091:CDS
TTGTTGGTGATTCTTTAGCT+AGG 0.490496 5.3:-24010635 MS.gene45091:CDS
ATTGATAGGAGAGGGAATAA+GGG 0.492867 5.3:-24010216 MS.gene45091:CDS
AGAGAAGAAAGTTGAAGGAA+TGG 0.493088 5.3:-24010091 MS.gene45091:CDS
CCCTTAATAGCATAATTGAT+AGG 0.509822 5.3:-24010230 MS.gene45091:CDS
TCTTGAACCCCATTAAAGAA+TGG 0.524242 5.3:+24009916 None:intergenic
GAAGGTGCTTGGGATAAGGC+TGG 0.529140 5.3:-24010147 MS.gene45091:CDS
TGCCTGGACCGATTGATACA+TGG 0.530575 5.3:-24009861 MS.gene45091:CDS
GAAAATTGAGATAGAAGAAG+TGG 0.532759 5.3:-24010055 MS.gene45091:CDS
CAAATGAATGCAAAATTCCA+AGG 0.537827 5.3:-24010707 MS.gene45091:CDS
CTTCCGGCTATTTACCATGA+GGG 0.538180 5.3:-24010339 MS.gene45091:CDS
TTGGCTTTGTTAAGACCAGA+TGG 0.544671 5.3:-24009967 MS.gene45091:CDS
CCCCATTAAAGAATGGAAAA+GGG 0.551208 5.3:+24009923 None:intergenic
AGAAATTATAAAGAAGTGGG+AGG 0.558622 5.3:-24009824 MS.gene45091:CDS
TTCCATGTATCAATCGGTCC+AGG 0.567285 5.3:+24009859 None:intergenic
CTAAAATTGAATCACCCTCA+TGG 0.567926 5.3:+24010325 None:intergenic
GGAAGAAATTGCATGACACA+TGG 0.573080 5.3:-24010768 None:intergenic
TCACCCTCATGGTAAATAGC+CGG 0.573329 5.3:+24010336 None:intergenic
TTGTACTATCAATTGGACAT+TGG 0.581516 5.3:-24010368 MS.gene45091:CDS
ATAGCATAATTGATAGGAGA+GGG 0.596014 5.3:-24010224 MS.gene45091:CDS
GAAGAAATTGCATGACACAT+GGG 0.618181 5.3:-24010767 None:intergenic
AAAGGGTTCATATAAGGACC+TGG 0.626122 5.3:+24009940 None:intergenic
AATTGAGATAGAAGAAGTGG+TGG 0.634610 5.3:-24010052 MS.gene45091:CDS
GCTTCCGGCTATTTACCATG+AGG 0.639421 5.3:-24010340 MS.gene45091:CDS
GTGGTGGCTGCTAAAGCCAA+AGG 0.645087 5.3:-24010036 MS.gene45091:CDS
AAGGAATGGATAGTGAGATG+AGG 0.645343 5.3:-24010077 MS.gene45091:CDS
CAAGCACCTTCAAAATGATG+TGG 0.645352 5.3:+24010159 None:intergenic
ACTTGTGTACCAAAATGGCA+AGG 0.655571 5.3:-24010562 MS.gene45091:CDS
AATAGCATAATTGATAGGAG+AGG 0.660993 5.3:-24010225 MS.gene45091:CDS
AGAAGTGGGAGGAACAACCT+AGG 0.672972 5.3:-24009813 MS.gene45091:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGAAATTATAAAGAAGT+GGG - chr5.3:24010730-24010749 MS.gene45091:CDS 15.0%
!!! TTTTAGAAATTATAAAGAAG+TGG - chr5.3:24010729-24010748 MS.gene45091:CDS 15.0%
!! TTCAAATATAGCTCATTATT+TGG + chr5.3:24010122-24010141 None:intergenic 20.0%
!!! AAAGTTAAGATTTGAAGTAT+TGG - chr5.3:24010556-24010575 MS.gene45091:CDS 20.0%
!!! GTTTTATGATGTATTAAGAA+AGG - chr5.3:24010292-24010311 MS.gene45091:CDS 20.0%
! ATGTATTAAGAAAGGCTTTA+AGG - chr5.3:24010300-24010319 MS.gene45091:CDS 25.0%
! ATTCAACTATTTCCTTGTAT+TGG - chr5.3:24010054-24010073 MS.gene45091:CDS 25.0%
! CAATAAAGATAGTCAAAATC+AGG + chr5.3:24009819-24009838 None:intergenic 25.0%
! CCTATCAATTATGCTATTAA+GGG + chr5.3:24010330-24010349 None:intergenic 25.0%
! GTCTTAATTACACTGAAATA+GGG - chr5.3:24010270-24010289 MS.gene45091:CDS 25.0%
! TCAATACCTTGTACTAAAAA+TGG + chr5.3:24010083-24010102 None:intergenic 25.0%
! TCCTATCAATTATGCTATTA+AGG + chr5.3:24010331-24010350 None:intergenic 25.0%
!! AGTATTGGATGTAACAAAAT+TGG - chr5.3:24010571-24010590 MS.gene45091:CDS 25.0%
!!! CTGATTTTGACTATCTTTAT+TGG - chr5.3:24009817-24009836 MS.gene45091:CDS 25.0%
AATAGCATAATTGATAGGAG+AGG - chr5.3:24010332-24010351 MS.gene45091:CDS 30.0%
AATGGAAAAGGGTTCATATA+AGG + chr5.3:24010626-24010645 None:intergenic 30.0%
AGAAATTATAAAGAAGTGGG+AGG - chr5.3:24010733-24010752 MS.gene45091:CDS 30.0%
ATAGCATAATTGATAGGAGA+GGG - chr5.3:24010333-24010352 MS.gene45091:CDS 30.0%
ATAGTACAATCATGTCCATT+TGG + chr5.3:24010178-24010197 None:intergenic 30.0%
ATCTCATTCCATGTATCAAT+CGG + chr5.3:24010707-24010726 None:intergenic 30.0%
CAAATGAATGCAAAATTCCA+AGG - chr5.3:24009850-24009869 MS.gene45091:CDS 30.0%
CCCTTAATAGCATAATTGAT+AGG - chr5.3:24010327-24010346 MS.gene45091:CDS 30.0%
CTTAGTTGGAGAAAAGTAAT+TGG + chr5.3:24009882-24009901 None:intergenic 30.0%
GAAAATTGAGATAGAAGAAG+TGG - chr5.3:24010502-24010521 MS.gene45091:CDS 30.0%
GACATGATTGTACTATCAAT+TGG - chr5.3:24010182-24010201 MS.gene45091:CDS 30.0%
GGTCTTAATTACACTGAAAT+AGG - chr5.3:24010269-24010288 MS.gene45091:CDS 30.0%
TAAAAATGGAGACCAATACA+AGG + chr5.3:24010069-24010088 None:intergenic 30.0%
TACAAAGAAGAGACTCTAAT+TGG + chr5.3:24009950-24009969 None:intergenic 30.0%
TGCAAAATGATTGTGTTCAT+TGG - chr5.3:24010669-24010688 MS.gene45091:CDS 30.0%
TGTGTTTGTTCTTACTTAGT+TGG + chr5.3:24009896-24009915 None:intergenic 30.0%
TTCTTCTCTCCATTTCTATA+AGG + chr5.3:24010455-24010474 None:intergenic 30.0%
TTGACTATCTTTATTGGAGA+TGG - chr5.3:24009823-24009842 MS.gene45091:CDS 30.0%
TTGTACTATCAATTGGACAT+TGG - chr5.3:24010189-24010208 MS.gene45091:CDS 30.0%
! AAAGTAATTGGTTCAAACCT+TGG + chr5.3:24009870-24009889 None:intergenic 30.0%
! AACCCTTTTCCATTCTTTAA+TGG - chr5.3:24010632-24010651 MS.gene45091:CDS 30.0%
! AAGACTAAGCCTTATAGAAA+TGG - chr5.3:24010443-24010462 MS.gene45091:CDS 30.0%
! ACCCTTTTCCATTCTTTAAT+GGG - chr5.3:24010633-24010652 MS.gene45091:CDS 30.0%
! ATGAGGGTGATTCAATTTTA+GGG - chr5.3:24010234-24010253 MS.gene45091:CDS 30.0%
! CTTGGAATTTTGCATTCATT+TGG + chr5.3:24009852-24009871 None:intergenic 30.0%
! GAATCATGTTGATGAGAAAT+GGG - chr5.3:24010139-24010158 MS.gene45091:CDS 30.0%
! TGAATCATGTTGATGAGAAA+TGG - chr5.3:24010138-24010157 MS.gene45091:CDS 30.0%
! TTTACACCACATCATTTTGA+AGG - chr5.3:24010392-24010411 MS.gene45091:CDS 30.0%
! TTTCTATAAGGCTTAGTCTT+TGG + chr5.3:24010443-24010462 None:intergenic 30.0%
!! AACAAACACATTGCTTTTGT+TGG - chr5.3:24009906-24009925 MS.gene45091:CDS 30.0%
!!! ATTTTAGGGTGTCATTATTG+TGG - chr5.3:24010248-24010267 MS.gene45091:CDS 30.0%
AAAGCCAAAGGCAATGAATT+TGG - chr5.3:24010533-24010552 MS.gene45091:CDS 35.0%
AATGGAGAGAAGAAAGTTGA+AGG - chr5.3:24010461-24010480 MS.gene45091:CDS 35.0%
AATTGAGATAGAAGAAGTGG+TGG - chr5.3:24010505-24010524 MS.gene45091:CDS 35.0%
AATTGATAGGAGAGGGAATA+AGG - chr5.3:24010340-24010359 MS.gene45091:CDS 35.0%
ACCCCATTAAAGAATGGAAA+AGG + chr5.3:24010638-24010657 None:intergenic 35.0%
AGAGAAGAAAGTTGAAGGAA+TGG - chr5.3:24010466-24010485 MS.gene45091:CDS 35.0%
ATTGATAGGAGAGGGAATAA+GGG - chr5.3:24010341-24010360 MS.gene45091:CDS 35.0%
CCCCATTAAAGAATGGAAAA+GGG + chr5.3:24010637-24010656 None:intergenic 35.0%
CCTAAACTTGTGTACCAAAA+TGG - chr5.3:24009990-24010009 MS.gene45091:CDS 35.0%
CTAAAATTGAATCACCCTCA+TGG + chr5.3:24010235-24010254 None:intergenic 35.0%
CTTTCCAAATTCATTGCCTT+TGG + chr5.3:24010540-24010559 None:intergenic 35.0%
TCTTGAACCCCATTAAAGAA+TGG + chr5.3:24010644-24010663 None:intergenic 35.0%
! AGGACAATCAATTTTCTAGG+TGG - chr5.3:24010015-24010034 MS.gene45091:CDS 35.0%
! CATGAGGGTGATTCAATTTT+AGG - chr5.3:24010233-24010252 MS.gene45091:CDS 35.0%
! CCCTTTTCCATTCTTTAATG+GGG - chr5.3:24010634-24010653 MS.gene45091:CDS 35.0%
! GCAAGGACAATCAATTTTCT+AGG - chr5.3:24010012-24010031 MS.gene45091:CDS 35.0%
!! ATTGATTGTCCTTGCCATTT+TGG + chr5.3:24010007-24010026 None:intergenic 35.0%
!! CCATTTTGGTACACAAGTTT+AGG + chr5.3:24009993-24010012 None:intergenic 35.0%
!! TTGTTGGTGATTCTTTAGCT+AGG - chr5.3:24009922-24009941 MS.gene45091:CDS 35.0%
!!! ACATCATTTTGAAGGTGCTT+GGG - chr5.3:24010400-24010419 MS.gene45091:CDS 35.0%
!!! TGGTCTCCATTTTTAGTACA+AGG - chr5.3:24010074-24010093 MS.gene45091:CDS 35.0%
AAAGGGTTCATATAAGGACC+TGG + chr5.3:24010620-24010639 None:intergenic 40.0%
AAGGAATGGATAGTGAGATG+AGG - chr5.3:24010480-24010499 MS.gene45091:CDS 40.0%
ACTTGTGTACCAAAATGGCA+AGG - chr5.3:24009995-24010014 MS.gene45091:CDS 40.0%
CAAGCACCTTCAAAATGATG+TGG + chr5.3:24010401-24010420 None:intergenic 40.0%
GGCAAAAGATATGCACCAAA+TGG - chr5.3:24010160-24010179 MS.gene45091:CDS 40.0%
!! TTGGCTTTGTTAAGACCAGA+TGG - chr5.3:24010590-24010609 MS.gene45091:CDS 40.0%
!!! CACATCATTTTGAAGGTGCT+TGG - chr5.3:24010399-24010418 MS.gene45091:CDS 40.0%
!!! TGGACATTGGTTTTTGCTTC+CGG - chr5.3:24010202-24010221 MS.gene45091:CDS 40.0%
!!! TTTTGAAGGTGCTTGGGATA+AGG - chr5.3:24010406-24010425 MS.gene45091:CDS 40.0%
CTTCCGGCTATTTACCATGA+GGG - chr5.3:24010218-24010237 MS.gene45091:CDS 45.0%
TCACCCTCATGGTAAATAGC+CGG + chr5.3:24010224-24010243 None:intergenic 45.0%
TTAAGACCAGATGGTCATCC+AGG - chr5.3:24010599-24010618 MS.gene45091:CDS 45.0%
TTCCATGTATCAATCGGTCC+AGG + chr5.3:24010701-24010720 None:intergenic 45.0%
! TGTGTTCATTGGTGTTTGCC+TGG - chr5.3:24010680-24010699 MS.gene45091:CDS 45.0%
AGAAGTGGGAGGAACAACCT+AGG - chr5.3:24010744-24010763 MS.gene45091:CDS 50.0%
GCTTCCGGCTATTTACCATG+AGG - chr5.3:24010217-24010236 MS.gene45091:CDS 50.0%
TAAGGACCTGGATGACCATC+TGG + chr5.3:24010608-24010627 None:intergenic 50.0%
TGCCTGGACCGATTGATACA+TGG - chr5.3:24010696-24010715 MS.gene45091:CDS 50.0%
GTGGTGGCTGCTAAAGCCAA+AGG - chr5.3:24010521-24010540 MS.gene45091:CDS 55.0%
!! GAAGGTGCTTGGGATAAGGC+TGG - chr5.3:24010410-24010429 MS.gene45091:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 24009801 24010778 24009801 ID=MS.gene45091
chr5.3 mRNA 24009801 24010778 24009801 ID=MS.gene45091.t1;Parent=MS.gene45091
chr5.3 exon 24009801 24010778 24009801 ID=MS.gene45091.t1.exon1;Parent=MS.gene45091.t1
chr5.3 CDS 24009801 24010778 24009801 ID=cds.MS.gene45091.t1;Parent=MS.gene45091.t1
Gene Sequence

>MS.gene45091

ATGACACATGGGAGACCTGATTTTGACTATCTTTATTGGAGATGGAAACCAAATGAATGCAAAATTCCAAGGTTTGAACCAATTACTTTTCTCCAACTAAGTAAGAACAAACACATTGCTTTTGTTGGTGATTCTTTAGCTAGGAACCAATTAGAGTCTCTTCTTTGTATGTTAACAACTGCTTCAATTCCTAAACTTGTGTACCAAAATGGCAAGGACAATCAATTTTCTAGGTGGTACTTTTCTTCATACAATTCAACTATTTCCTTGTATTGGTCTCCATTTTTAGTACAAGGTATTGAAAAATCAAACACAAGTCCAAATAATGAGCTATATTTGAATCATGTTGATGAGAAATGGGCAAAAGATATGCACCAAATGGACATGATTGTACTATCAATTGGACATTGGTTTTTGCTTCCGGCTATTTACCATGAGGGTGATTCAATTTTAGGGTGTCATTATTGTGGTCTTAATTACACTGAAATAGGGTTTTATGATGTATTAAGAAAGGCTTTAAGGACTACCCTTAATAGCATAATTGATAGGAGAGGGAATAAGGGTAATGAAATTGATGTAGTTGTCACAACATTTACACCACATCATTTTGAAGGTGCTTGGGATAAGGCTGGTGCTTGTCCAAAGACTAAGCCTTATAGAAATGGAGAGAAGAAAGTTGAAGGAATGGATAGTGAGATGAGGAAAATTGAGATAGAAGAAGTGGTGGCTGCTAAAGCCAAAGGCAATGAATTTGGAAAGTTAAGATTTGAAGTATTGGATGTAACAAAATTGGCTTTGTTAAGACCAGATGGTCATCCAGGTCCTTATATGAACCCTTTTCCATTCTTTAATGGGGTTCAAGAGTATGTGCAAAATGATTGTGTTCATTGGTGTTTGCCTGGACCGATTGATACATGGAATGAGATATTTTTAGAAATTATAAAGAAGTGGGAGGAACAACCTAGGAGTGAAGAATGA

Protein sequence

>MS.gene45091.t1

MTHGRPDFDYLYWRWKPNECKIPRFEPITFLQLSKNKHIAFVGDSLARNQLESLLCMLTTASIPKLVYQNGKDNQFSRWYFSSYNSTISLYWSPFLVQGIEKSNTSPNNELYLNHVDEKWAKDMHQMDMIVLSIGHWFLLPAIYHEGDSILGCHYCGLNYTEIGFYDVLRKALRTTLNSIIDRRGNKGNEIDVVVTTFTPHHFEGAWDKAGACPKTKPYRNGEKKVEGMDSEMRKIEIEEVVAAKAKGNEFGKLRFEVLDVTKLALLRPDGHPGPYMNPFPFFNGVQEYVQNDCVHWCLPGPIDTWNEIFLEIIKKWEEQPRSEE