AlfalfaGEDB | MS.gene45204

M. sativa cultivar XinJiangDaYe / MS.gene45204

KEGG: K08493
GO: GO:0005575 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0033036 GO:0042886 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0071702 GO:0071705 GO:0110165
PFAM: PF05008.18 PF12352.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45204.t1	XP_013447550.1	97.8	178	4	0	1	178	1	178	9.80E-88	332.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45204.t1	Q9LVP9	72.5	178	49	0	1	178	1	178	2.8e-67	256.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45204.t1	B7FGM6	97.8	178	4	0	1	178	1	178	7.1e-88	332.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05119	MS.gene45204	0.800424	1.45E-48	-1.69E-46
MS.gene052309	MS.gene45204	0.822168	2.74E-53	-1.69E-46
MS.gene05954	MS.gene45204	-0.815808	7.65E-52	-1.69E-46
MS.gene060634	MS.gene45204	0.848146	7.38E-60	-1.69E-46
MS.gene061040	MS.gene45204	0.818278	2.13E-52	-1.69E-46
MS.gene061114	MS.gene45204	0.816496	5.37E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45204.t1	MTR_7g011570	97.753	178	4	0	1	178	1	178	4.24e-128	358
MS.gene45204.t1	MTR_7g011570	97.753	178	4	0	1	178	83	260	9.68e-127	358
MS.gene45204.t1	MTR_6g012860	85.393	178	26	0	1	178	1	178	5.46e-112	318
MS.gene45204.t1	MTR_3g037380	68.539	178	56	0	1	178	1	178	4.43e-88	257
MS.gene45204.t1	MTR_5g042530	65.730	178	60	1	1	177	1	178	3.59e-79	235
MS.gene45204.t1	MTR_3g037380	67.742	124	40	0	55	178	1	124	1.32e-56	176
MS.gene45204.t1	MTR_5g042530	67.480	123	40	0	55	177	1	123	4.32e-53	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45204.t1	AT3G29100	72.472	178	49	0	1	178	1	178	1.83e-94	273
MS.gene45204.t1	AT5G39510	70.225	178	53	0	1	178	1	178	5.55e-92	267
MS.gene45204.t1	AT1G26670	66.292	178	59	1	1	177	1	178	7.78e-82	241
MS.gene45204.t1	AT3G29100	73.228	127	34	0	52	178	26	152	7.78e-65	197
MS.gene45204.t1	AT3G29100	74.194	124	32	0	55	178	1	124	1.73e-63	193
MS.gene45204.t1	AT3G29100	74.194	124	32	0	55	178	1	124	1.73e-63	193
MS.gene45204.t1	AT3G29100	74.194	124	32	0	55	178	1	124	1.73e-63	193
MS.gene45204.t1	AT5G39630	46.328	177	91	1	1	177	1	173	1.73e-45	149

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Find 38 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACATATCCCGGGCAGA+GGG	0.578673	7.3:-86198692	None:intergenic
AAGTTTGCAGCCAAACATTA+AGG	0.247833	7.3:+86198580	MS.gene45204:CDS
AATATTTCAGATATAAAGGC+TGG	0.486099	7.3:+86198419	MS.gene45204:CDS
AATCGATGAGGCAGAAGCTT+TGG	0.451935	7.3:+86198442	MS.gene45204:CDS
ACAACATATCCCGGGCAGAG+GGG	0.706468	7.3:-86198691	None:intergenic
ACGATGAGTACCGTGTTTGA+AGG	0.542645	7.3:+86195337	None:intergenic
ACGTTCATATCCTTCAAACA+CGG	0.683882	7.3:-86195347	None:intergenic
ACTGCAGCTGCTGCTCTTAA+TGG	0.279246	7.3:+86195409	MS.gene45204:CDS
AGAAGTACACCCTTAATGTT+TGG	0.429162	7.3:-86198590	None:intergenic
AGCAGCTGCAGTACAAATTT+TGG	0.223793	7.3:-86195398	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTGAGGAATGCAATCA+AGG	-	chr7.3:86196990-86197009	None:intergenic	30.0%
AAATTTGGGAAGCTACAATT+TGG	+	chr7.3:86196295-86196314	MS.gene45204:intron	30.0%
AAGACATATTTCCCTAAACA+CGG	+	chr7.3:86198063-86198082	MS.gene45204:intron	30.0%
AAGTATTAAACTGACATGAG+AGG	+	chr7.3:86197354-86197373	MS.gene45204:intron	30.0%
AAGTGAATAATTCGCTTTAG+AGG	+	chr7.3:86197571-86197590	MS.gene45204:intron	30.0%
AATATAATTAGGATGCGAAG+TGG	-	chr7.3:86196253-86196272	None:intergenic	30.0%
AATTCGCCCCTAAAATTATA+AGG	-	chr7.3:86195937-86195956	None:intergenic	30.0%
AATTTGAGGAATGCAATCAA+GGG	-	chr7.3:86196989-86197008	None:intergenic	30.0%
ACCTTCTAACAAAAACAAGT+GGG	-	chr7.3:86199142-86199161	None:intergenic	30.0%
AGCAACTCAATAACCATTAA+GGG	-	chr7.3:86197411-86197430	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	86195340	86200855	86195340	ID=MS.gene45204
chr7.3	mRNA	86195340	86200855	86195340	ID=MS.gene45204.t1;Parent=MS.gene45204
chr7.3	exon	86195340	86195433	86195340	ID=MS.gene45204.t1.exon1;Parent=MS.gene45204.t1
chr7.3	CDS	86195340	86195433	86195340	ID=cds.MS.gene45204.t1;Parent=MS.gene45204.t1
chr7.3	exon	86198405	86198463	86198405	ID=MS.gene45204.t1.exon2;Parent=MS.gene45204.t1
chr7.3	CDS	86198405	86198463	86198405	ID=cds.MS.gene45204.t1;Parent=MS.gene45204.t1
chr7.3	exon	86198554	86198742	86198554	ID=MS.gene45204.t1.exon3;Parent=MS.gene45204.t1
chr7.3	CDS	86198554	86198742	86198554	ID=cds.MS.gene45204.t1;Parent=MS.gene45204.t1
chr7.3	exon	86200294	86200464	86200294	ID=MS.gene45204.t1.exon4;Parent=MS.gene45204.t1
chr7.3	CDS	86200294	86200464	86200294	ID=cds.MS.gene45204.t1;Parent=MS.gene45204.t1
chr7.3	exon	86200835	86200855	86200835	ID=MS.gene45204.t1.exon5;Parent=MS.gene45204.t1
chr7.3	CDS	86200835	86200855	86200835	ID=cds.MS.gene45204.t1;Parent=MS.gene45204.t1

Gene Sequence

>MS.gene45204

ATGAGTACCGTGTTTGAAGGATATGAACGTCAATACTGCGATCTTTCTGCTAAACTATCCAAAATTTGTACTGCAGCTGCTGCTCTTAATGGAGGTAATTGAATTATTCTTAATCTCGCTTTTTCGTGCATGTTTGGTATTACGGTGGATTTGCCAGAATCATGGTGCGGTATTTTGAAATAAAAATTAGTCCCTAAATCATATCACTTACTAGAAATTAGTTCCTAAATTAATATCACTTAATTTCAAACTAGTCCTTACCTATGAAGCACATTACGAGACTCAACCCGGACACTGACACGCCGACACTGCTAATAACTTGAGAAAATCGTATAATTCAGTGTTATCATATGTGTCGGTGTGAGACACGCCAGGGCACTCCTTATCCGAGGAGTGTCTGTGCTTCATACTCCTTACAAGCTAACACAAATTAGTTCCTGAATTATATTGCTAACTAGCAAATTAGTTCCTAAATAACATCACTTTAATATCAAACTAGTCTTTACAAGTTAACAGAAGATCAAGTTTCCCGACATAATTCAAAATCGGGGTCTTTTTGCCTATTCATAAATTTCAGAGATGAAAAAGTCTGACCCTTATAATTTTAGGGGCGAATTGGTGATTTACTATATTTTAGTGGTTACTTGGTTCAGTAAGTAATATTTGTTATTTAGTTTACTGTCTGCTTCTTATTTTGCTAAATTAGATTGCATTGCATGTTTGTTTTGGATATTTATTTTTGTATTTAAAATATGATAATTTGTTTGAGTTTAATTTGATTGGTGGTTTAGTAAGTATAAAAATTAAGTTTGTTTGGTTTCAATTTAGGAGGAGGCAAAGTTGATTCCAAAGTTGTAGAATTTATTTTGCATCAGAATTGATTATGTGTATGTTTGGGTTCGCGTTAAAACCACTTCGCATCCTAATTATATTGTCTCAATGCGATTTTGCCGTGAAATTTGGGAAGCTACAATTTGGTGCTTCGACCATAACGCGGTTTTAATAGTACTCTTGAGACCAGTTTTGATGTAGTCCTTTTAATTTATATACATATTTCTTGGGTTCATTTGAGCTTTCGAGCTGAACCAATCGAGCCGAATCGAGCGGTTCATTAACTTAAAACGAGTGTAGTTCAAGCTGGAAAAAAGTTTGTGGTGAACTCAAAGTCGAGTTTCAAGCTCGATAATTTTTTATTGAGTCGAGCCCAGCTGAATAAAGTTTAACTTAGCTCAACTCATTTCCAGCCCTAACCATAACATGTTGCTGCAATTCCACAATCCATTTGAAGCTAAAATTTGGAGCTTTTACCTCTAATTGATTTTTATTTTTAGCCTTAAATTTCGTGTTTAATTCACTTTTACATGGATGCATCTAGACCTAAATCGCTTTACATTCAACTCACTTCTAGAAAGAATCAATTGTTGTTATCATCCAATCATGTTTTGCTGCTACATTCTTTAGTTGTTTTGATTGTTGTCTAACTCGTTAACATTATGTCTAGACATGGGTGGAAGTGGAAAATAGTTTAAAACGTTTTGAAATAGATCAGAAGTAAATAATGTGTTTATTTTCTATATAAGGTTCACAATTGTTTCTGTTTACAAGAGTTCAGTTAATGTTAATGTGTAAAACCATTAATGAGTATTCCCTTGATTGCATTCCTCAAATTTGGTAATGCTTTGTATGTATACCATCGTGTGGACTTTCCCTTTCACACATTGGTGCACTGCTCCTTTCTTTGGAAATTGTGTTGATGTATAGCTCCTATTAAGAAATTTCCGTCAGAAAATCTCTATGACATTGGTTTCTGCGTGCCTCCTACAGTTGTACTAGTTTTCTGTGGTAGTGAAATTATGAGTGTCTCTGTCTTCTTTTCATATAAAGAAATTTCCTTTTTACATATATTTTTTCAAATGATTATTATTATTTTTTTGAATGGCAATGTTAGTAATTAGTTGTTAGATTAATATTTTTTCAAATGAATTAAGTTTGTGTTTGATGCATCTAAGCAAAAAAGTATTAAACTGACATGAGAGGCAATGTCTTACACTTGAAACCTCTAATGTTTCCCTTAATGGTTATTGAGTTGCTCCGAATTGACGCAGAAACTGAACTCTCTGGAATTTGATATTTCTGATCTAATAGGGCTAGGTACATTTCCTGCTGTTTCAAATGCATACCTCTTTATCTTTATGTTTGATGCCCCTCCTTTTTTTGGATTAACTTCTCCAAAGTGAATAATTCGCTTTAGAGGGGAGAGTAAATATGTCCACTGTTGACAAGTGATGAGTTATTCATCAATGATTTACATTACTTACTTTCCCTTCTAAGATGAATTGTTCACCTTTCTAAACTGAGTTGCACACTTTAAAGTAGTTAAATCCCCTTATTTATGTGCCTTTTGTTTGTTAAAAAAAGAAAAAGAAATTTGTGTGCCTTTTGTTAGTTAATTAGGCGCTGGGTGAGGCAGCATTCTGATCAAGTCATAATATAGTAATGTAAATTCCAATAGTCATTTTATGAGAAGGCTAAAACGCACTTTTTGCCCTCTAAGTTTCAAAATGTTGCAATTTTGGCCCCCTATTAAAAAAAAAGCATTTTTGGCCCCCTTCGTCCAAAAATTGCTGAGAAGAGGCCACGTGTCCCAAAAAAGGGGCCATAATTGCAACTTTTTCTAAAGATAAGGGGTCAAAAAGCATATTTCCCTTATGTTAGAGGGTCAAAAGACATATTTCCCTAAACACGGGGGGTCACTTTTGCCATTTTTTTTAATAGGGGGCCAAAATTGCAACATTTTGAAACTTAAGGGGCAAAAAGTACAGTTTAGCCTTATGAGAATAGGGTATATTTTGCTATTGGCTTACTTGAGTATTTGATGGAACTTAAAATCTTCTTCATAGAATGCTAAACCCTAAAACTAAATATAATTTCAAAATGACAAACACAAACCATTAAGATATTTATCAAGAAGAGAGGAACCATTGACGCTTATCATTTCATGCTGGAGTTATGAACATTCAAAACATTTTCTTTTATGATTTGTGTCATTTTTGTTCATTCTGCAGAGCAAAAGAAGCAAAATATTTCAGATATAAAGGCTGGAATCGATGAGGCAGAAGCTTTGGTACCCTCTTCGCCTTTTTCATTTTGTTTGAAAGCTTCCTTCTTTCTTCTGTATTATGGGATTCTGATATACGTGCTTATCGATTTGTAGATTCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCAAACATTAAGGGTGTACTTCTTGCTAAGTTGCGGGAATACAAATCAGATCTGAACAATAATAAAAGCGAACTTAAGAAACTTGTATCTGGTAACATGAACCCCTCTGCCCGGGATATGTTGTTGGAATCAGGCATGGCAGATGCTATGACGGTATGATTGATTTTTAATTGACACTCTTTGATGATGTTAAAGGACCATTCATTGTTATGTGAGACCATGATAACGCAAAGAATTGGTCCTCCATCTCCTTTATATTCTGTGAAACCATGATGGCTACGTACTGGCTTGAATTCCAATCTCTAAAGTTTCAAGTCAACAGAAAAGATCAATTATATATATATATATATATATATATATATATATATATATATATATATATAGGGATTTGCTAGAACACACCCACTAGTTTTTATGTGGGAGTGTTTTAGCAAAGCTACACCTTAGGGTGTATTTAACCACTTTTTAGTTATTCACTTGCTAAAATACTCCTTCTAAAAAGTAAGTGGGTGTATCCTAGCAAACCCCTATAGGATTTGCTAGAACACACCCACTTGTTTTTGTTAGAAGGTGTGTTATAGCAACATACACCTTAAGGTGTATTTATTAACTTTTTAGTTATAACTTGCTAAAACACTCCCACATATATATATATATATATATATATATATATATATATATATATAATAATAATAATAATAATAATAAGGGTTAAATATGTTTCTATGCGCCCCTTTGAATAATAGTCCCTACATTTCATTAAATGTTTTTAAAATCCTCACATTTTATCCCCGTTATCAAAATTAGTCGTTGCTGTTAATTCTCTAACGGAAATTCTGATTTGGCAGTTAGTGGGTCCCAATTATTTTAAGGTTAAATATGTTTTTGGTCCCTATATTTTGCGTGATTTTGAAAAATAGTCCTTATATTTCAATAAATGTTTTTAAAATCCCTAAAATAATAAGGACTATTCTTCAAAGTCACGCAAAATGTAGGGACCACAAACATATTTAACCCTAAAATAATTGGGACCCACTAACTGCCACATCAGCATCCCGTTAGAGAATTAACGGCAGGGACTAATTTTGAGAACGGAGATAAAATGTGAGGATTTTAAAAACATTTAATGAAATGTAGGGACTATTCTTCAAAGAGGCGCAAAATGTAAGGAATAAAAACATATTTAACCCTAATCATAATAATAATAAAGTTAGGAAGACAGTAGAGGCAGTCAATTACTATATAATTTGTGAAGATTTGGTTGAATTTTTACTATGGACTCCTTCCAGTGAGGCAAACACCAAAAGAAATATAAACTTTCTGTACGGGAAGAAAATAAGATTAATTGTATAGAAAAGTGTAACATTTTAGAACAGTAGTTATGGATTTTCAATACTAATTTTTCTAATTATAGTTGACATCATAAATAAAGAATAAAATTTTCGATACATATTATATTTTTTATATAAAATAGATTAGATTAATATAATTTTTTACATTAATCTCTTCAGACATTTCATGTTGGTGGTGCACAAAATGGTGATATCTTGAGCCCTAATGTTGCAAATGGCATTTCAACCATTTAATTCCTGATGTTTTAAATTAATTGAGTAGCTTCAGTCTACATTTCTGAATATTCATTTTTCTTGGGTATTCCCCACCAAATTTGATTCCTATTGCTTATTGCTAATCTGGCAAAAACAGGTATCAGCTGATCAAAGAGACAGATTAATGTTTTCAACTGAGAAGTTGAACAAATCTAGTGACAGAATTAAGGACAGCAGGAGAACAATGTTGGAAACGGAAGAGCTTGGGGTTTCAATCCTTCAAGATTTGCATTCTCAGCGACAATCTCTACTGCATGCACATGACACAGTAATGTTTTTATCTTCTTCCTTTCACTTATGATTTGCTCGTGTTTCTATTAGTAAGTACTAAGTAATAACAAGATGCTTTTAGAAATTCTAATTTCTAATAATGGAAGCTGCATTATGCAGCGTTTCTTGGACTTATATCATAGGAGTTTGAGTGAAATGCTAGAAATTGATTAAGTTTATCTTCGGACATGTAGCATATATACATTGCTTTTCTTCTTTACGGTAGATTTTCTGCATATTGTTTCATTAATATTACTCATTTGTTCTTGAGAAAATGAGAATTACATGAAAGTGTAACTCTGTAATGGTAGTGGTGAAAGACAAATCACACACTGTTCGATCTTCTGATGATCGTATTCCTTATGCAGCTTCATGGAGTGGATGATAAC

Protein sequence

>MS.gene45204.t1

MSTVFEGYERQYCDLSAKLSKICTAAAALNGEQKKQNISDIKAGIDEAEALIRKMDLEARSLQPNIKGVLLAKLREYKSDLNNNKSELKKLVSGNMNPSARDMLLESGMADAMTVSADQRDRLMFSTEKLNKSSDRIKDSRRTMLETEELGVSILQDLHSQRQSLLHAHDTLHGVDDN