AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45309

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45309.t1 MTR_0008s0390 90.517 232 16 1 16 247 47 272 4.98e-145 406
MS.gene45309.t1 MTR_0008s0470 75.000 252 36 3 16 247 47 291 2.31e-125 357
MS.gene45309.t1 MTR_0251s0050 71.795 234 56 5 16 247 47 272 9.01e-103 299
MS.gene45309.t1 MTR_2g089420 37.050 278 123 8 16 244 45 319 3.48e-50 170
MS.gene45309.t1 MTR_2g089450 39.574 235 108 7 15 247 45 247 5.28e-43 146
MS.gene45309.t1 MTR_1g076150 49.032 155 68 3 16 169 46 190 6.17e-38 133
MS.gene45309.t1 MTR_1g043080 46.104 154 71 2 16 169 46 187 1.48e-37 132
MS.gene45309.t1 MTR_1g043050 40.580 207 98 8 16 211 46 238 4.53e-37 131
MS.gene45309.t1 MTR_7g115650 45.890 146 66 2 15 150 45 187 3.84e-36 127
MS.gene45309.t1 MTR_4g100720 72.000 75 21 0 12 86 43 117 5.08e-35 123
MS.gene45309.t1 MTR_7g096930 74.324 74 19 0 16 89 46 119 7.02e-35 126
MS.gene45309.t1 MTR_0008s0280 39.234 209 97 8 3 208 40 221 5.69e-34 122
MS.gene45309.t1 MTR_4g125520 39.320 206 85 6 16 208 46 224 8.25e-34 124
MS.gene45309.t1 MTR_3g077110 69.444 72 22 0 16 87 46 117 2.31e-33 124
MS.gene45309.t1 MTR_1g085040 74.286 70 18 0 16 85 46 115 2.45e-33 124
MS.gene45309.t1 MTR_1g112760 68.056 72 23 0 16 87 47 118 2.69e-33 120
MS.gene45309.t1 MTR_1g085640 39.810 211 89 5 16 194 46 250 2.96e-33 124
MS.gene45309.t1 MTR_4g105130 69.444 72 22 0 16 87 46 117 4.17e-33 123
MS.gene45309.t1 MTR_8g027345 63.953 86 31 0 15 100 45 130 4.85e-33 122
MS.gene45309.t1 MTR_1g100653 70.833 72 21 0 15 86 45 116 1.10e-32 120
MS.gene45309.t1 MTR_2g097910 71.831 71 20 0 15 85 53 123 1.31e-32 121
MS.gene45309.t1 MTR_3g028740 73.239 71 19 0 15 85 55 125 2.65e-32 120
MS.gene45309.t1 MTR_8g031360 63.953 86 24 1 2 87 41 119 3.41e-32 119
MS.gene45309.t1 MTR_7g110830 71.429 70 20 0 16 85 46 115 3.93e-32 120
MS.gene45309.t1 MTR_3g097450 67.123 73 24 0 13 85 43 115 4.39e-32 119
MS.gene45309.t1 MTR_4g073420 61.842 76 29 0 13 88 43 118 4.48e-32 119
MS.gene45309.t1 MTR_4g065017 62.353 85 31 1 16 100 51 134 4.74e-32 120
MS.gene45309.t1 MTR_7g076740 71.429 70 20 0 16 85 47 116 5.17e-32 119
MS.gene45309.t1 MTR_1g017000 49.573 117 51 2 16 131 47 156 5.38e-32 118
MS.gene45309.t1 MTR_5g079670 65.333 75 26 0 13 87 42 116 5.47e-32 117
MS.gene45309.t1 MTR_7g117730 70.423 71 21 0 15 85 45 115 5.84e-32 118
MS.gene45309.t1 MTR_0063s0090 69.118 68 21 0 16 83 46 113 7.36e-32 117
MS.gene45309.t1 MTR_0197s0010 50.893 112 49 3 15 122 34 143 7.82e-32 117
MS.gene45309.t1 MTR_8g095390 62.500 80 26 1 13 88 43 122 9.89e-32 119
MS.gene45309.t1 MTR_4g102380 67.123 73 24 0 15 87 45 117 1.23e-31 117
MS.gene45309.t1 MTR_6g090405 59.770 87 28 1 1 87 39 118 1.47e-31 117
MS.gene45309.t1 MTR_3g074520 68.056 72 23 0 16 87 46 117 3.01e-31 118
MS.gene45309.t1 MTR_5g029840 58.824 85 35 0 15 99 45 129 3.22e-31 117
MS.gene45309.t1 MTR_4g082290 71.831 71 20 0 15 85 45 115 3.34e-31 119
MS.gene45309.t1 MTR_4g082230 71.831 71 20 0 15 85 45 115 3.63e-31 119
MS.gene45309.t1 MTR_6g055910 57.143 91 30 1 16 106 19 100 4.13e-31 115
MS.gene45309.t1 MTR_1g086530 47.826 138 50 4 3 127 47 175 4.45e-31 116
MS.gene45309.t1 MTR_2g089620 67.123 73 24 0 15 87 45 117 5.61e-31 117
MS.gene45309.t1 MTR_7g011170 51.402 107 46 2 16 118 46 150 5.92e-31 116
MS.gene45309.t1 MTR_4g091490 66.667 72 24 0 16 87 47 118 9.37e-31 117
MS.gene45309.t1 MTR_1g100667 66.667 72 24 0 15 86 46 117 1.01e-30 115
MS.gene45309.t1 MTR_4g478180 67.123 73 24 0 15 87 46 118 1.24e-30 116
MS.gene45309.t1 MTR_1g110460 57.447 94 37 1 13 106 57 147 1.38e-30 115
MS.gene45309.t1 MTR_2g064160 66.667 72 24 0 16 87 45 116 1.46e-30 115
MS.gene45309.t1 MTR_2g011660 65.753 73 25 0 15 87 46 118 1.53e-30 116
MS.gene45309.t1 MTR_3g083540 61.039 77 30 0 15 91 74 150 1.70e-30 115
MS.gene45309.t1 MTR_8g017390 64.935 77 25 1 16 90 47 123 1.75e-30 118
MS.gene45309.t1 MTR_1g062940 47.414 116 44 2 2 107 33 141 1.97e-30 113
MS.gene45309.t1 MTR_6g055910 57.143 91 30 1 16 106 48 129 2.09e-30 114
MS.gene45309.t1 MTR_3g461490 66.197 71 24 0 15 85 45 115 2.14e-30 115
MS.gene45309.t1 MTR_3g065440 56.250 96 36 2 15 106 45 138 2.18e-30 115
MS.gene45309.t1 MTR_3g103570 37.179 156 96 2 14 168 45 199 3.34e-30 115
MS.gene45309.t1 MTR_5g079290 42.308 156 69 4 15 155 50 199 3.45e-30 113
MS.gene45309.t1 MTR_2g099740 66.667 72 24 0 16 87 46 117 3.54e-30 116
MS.gene45309.t1 MTR_5g007370 53.125 96 41 1 15 106 45 140 3.76e-30 114
MS.gene45309.t1 MTR_1g086510 47.967 123 49 2 13 129 52 165 4.05e-30 113
MS.gene45309.t1 MTR_4g485530 64.000 75 27 0 13 87 43 117 4.69e-30 111
MS.gene45309.t1 MTR_4g121460 64.789 71 25 0 15 85 45 115 4.90e-30 114
MS.gene45309.t1 MTR_5g014990 60.811 74 29 0 14 87 45 118 5.11e-30 114
MS.gene45309.t1 MTR_8g020490 66.197 71 24 0 15 85 41 111 5.38e-30 112
MS.gene45309.t1 MTR_8g042410 65.714 70 24 0 16 85 71 140 5.40e-30 117
MS.gene45309.t1 MTR_1g045610 57.647 85 36 0 15 99 54 138 6.33e-30 112
MS.gene45309.t1 MTR_2g067420 71.212 66 19 0 15 80 47 112 6.93e-30 114
MS.gene45309.t1 MTR_5g042030 66.667 72 24 0 16 87 41 112 7.67e-30 113
MS.gene45309.t1 MTR_7g010210 68.571 70 22 0 16 85 46 115 9.58e-30 114
MS.gene45309.t1 MTR_7g010210 68.571 70 22 0 16 85 46 115 1.04e-29 112
MS.gene45309.t1 MTR_5g078140 64.789 71 25 0 15 85 45 115 1.06e-29 113
MS.gene45309.t1 MTR_8g017440 64.789 71 25 0 15 85 45 115 1.06e-29 114
MS.gene45309.t1 MTR_6g012690 70.000 70 21 0 16 85 46 115 1.12e-29 114
MS.gene45309.t1 MTR_8g017540 63.014 73 27 0 15 87 91 163 1.18e-29 114
MS.gene45309.t1 MTR_3g011610 53.191 94 43 1 16 108 71 164 1.19e-29 116
MS.gene45309.t1 MTR_2g096380 40.141 142 72 3 14 154 19 148 1.27e-29 110
MS.gene45309.t1 MTR_7g035075 50.000 118 55 1 13 130 45 158 1.39e-29 110
MS.gene45309.t1 MTR_8g060940 70.588 68 20 0 15 82 40 107 1.56e-29 111
MS.gene45309.t1 MTR_8g098860 64.789 71 25 0 15 85 45 115 2.59e-29 112
MS.gene45309.t1 MTR_1g017140 50.575 87 43 0 14 100 45 131 2.64e-29 112
MS.gene45309.t1 MTR_2g096380 40.426 141 71 3 15 154 39 167 2.66e-29 110
MS.gene45309.t1 MTR_1g073170 56.471 85 37 0 15 99 53 137 2.92e-29 110
MS.gene45309.t1 MTR_4g063100 62.500 72 27 0 14 85 10 81 2.97e-29 110
MS.gene45309.t1 MTR_4g057635 56.977 86 31 1 8 87 33 118 3.12e-29 112
MS.gene45309.t1 MTR_8g017500 65.714 70 24 0 16 85 46 115 3.45e-29 112
MS.gene45309.t1 MTR_2g034790 61.972 71 27 0 15 85 45 115 3.85e-29 112
MS.gene45309.t1 MTR_7g111290 71.875 64 18 0 16 79 4 67 3.98e-29 112
MS.gene45309.t1 MTR_8g017340 63.636 77 27 1 16 91 47 123 4.80e-29 114
MS.gene45309.t1 MTR_5g078910 65.278 72 25 0 16 87 41 112 6.00e-29 111
MS.gene45309.t1 MTR_3g052430 61.429 70 27 0 16 85 75 144 6.99e-29 114
MS.gene45309.t1 MTR_4g063100 57.317 82 31 1 4 85 33 110 7.13e-29 109
MS.gene45309.t1 MTR_3g052450 58.333 72 30 0 14 85 72 143 7.91e-29 114
MS.gene45309.t1 MTR_0001s0360 65.278 72 25 0 16 87 41 112 9.08e-29 109
MS.gene45309.t1 MTR_5g078950 70.588 68 20 0 16 83 41 108 9.13e-29 109
MS.gene45309.t1 MTR_7g111290 71.875 64 18 0 16 79 46 109 2.04e-28 111
MS.gene45309.t1 MTR_5g079220 63.014 73 27 0 15 87 54 126 2.08e-28 109
MS.gene45309.t1 MTR_8g017350 62.338 77 28 1 16 91 47 123 2.17e-28 113
MS.gene45309.t1 MTR_1g021230 49.474 95 48 0 16 110 91 185 2.93e-28 111
MS.gene45309.t1 MTR_5g010020 67.692 65 21 0 16 80 46 110 3.32e-28 110
MS.gene45309.t1 MTR_6g006030 62.500 72 27 0 13 84 45 116 5.07e-28 106
MS.gene45309.t1 MTR_5g078800 63.014 73 27 0 15 87 40 112 1.12e-27 107
MS.gene45309.t1 MTR_6g009430 56.471 85 32 1 8 87 33 117 1.15e-27 108
MS.gene45309.t1 MTR_7g102110 59.459 74 30 0 14 87 45 118 1.15e-27 107
MS.gene45309.t1 MTR_5g078860 63.889 72 26 0 16 87 41 112 1.24e-27 107
MS.gene45309.t1 MTR_7g017260 48.958 96 45 1 15 110 60 151 1.25e-27 107
MS.gene45309.t1 MTR_4g128670 64.179 67 24 0 14 80 45 111 2.25e-27 107
MS.gene45309.t1 MTR_7g087130 64.789 71 25 0 15 85 45 115 2.33e-27 107
MS.gene45309.t1 MTR_6g012180 69.231 65 20 0 16 80 46 110 2.76e-27 107
MS.gene45309.t1 MTR_5g079120 51.648 91 43 1 15 104 94 184 4.99e-27 106
MS.gene45309.t1 MTR_0140s0030 62.857 70 26 0 16 85 47 116 5.09e-27 106
MS.gene45309.t1 MTR_0489s0020 62.857 70 26 0 16 85 47 116 5.09e-27 106
MS.gene45309.t1 MTR_2g095520 58.228 79 27 1 8 80 33 111 5.31e-27 106
MS.gene45309.t1 MTR_3g039990 61.972 71 27 0 15 85 46 116 9.32e-27 105
MS.gene45309.t1 MTR_4g097570 48.387 93 48 0 14 106 45 137 1.69e-26 104
MS.gene45309.t1 MTR_4g097570 48.387 93 48 0 14 106 46 138 2.04e-26 104
MS.gene45309.t1 MTR_0247s0040 62.319 69 26 0 15 83 40 108 1.38e-25 99.4
MS.gene45309.t1 MTR_0193s0090 34.857 175 95 4 15 188 40 196 3.80e-25 99.0
MS.gene45309.t1 MTR_2g033170 47.748 111 49 1 13 123 55 156 1.34e-24 100
MS.gene45309.t1 MTR_2g088170 61.972 71 27 0 15 85 62 132 1.41e-24 101
MS.gene45309.t1 MTR_5g078930 50.549 91 44 1 15 104 42 132 4.43e-24 96.3
MS.gene45309.t1 MTR_1g083630 57.143 70 30 0 16 85 46 115 6.02e-24 100
MS.gene45309.t1 MTR_3g101290 60.000 70 28 0 17 86 69 138 1.32e-23 95.5
MS.gene45309.t1 MTR_4g123040 61.333 75 29 0 12 86 54 128 1.88e-23 96.7
MS.gene45309.t1 MTR_5g016510 38.583 127 69 2 18 144 38 155 1.89e-23 96.7
MS.gene45309.t1 MTR_7g109320 61.111 72 28 0 15 86 45 116 2.80e-23 97.1
MS.gene45309.t1 MTR_4g019370 39.024 123 50 3 17 114 70 192 5.00e-23 96.3
MS.gene45309.t1 MTR_5g062790 44.000 100 48 3 15 106 42 141 1.83e-22 94.0
MS.gene45309.t1 MTR_6g015455 57.971 69 29 0 18 86 38 106 1.83e-22 96.7
MS.gene45309.t1 MTR_8g006470 55.556 72 31 1 16 86 44 115 6.96e-22 92.0
MS.gene45309.t1 MTR_6g074860 58.209 67 28 0 18 84 37 103 8.78e-22 90.9
MS.gene45309.t1 MTR_4g094982 52.174 69 33 0 18 86 38 106 1.61e-21 90.9
MS.gene45309.t1 MTR_3g045430 55.714 70 31 0 16 85 47 116 3.40e-21 90.5
MS.gene45309.t1 MTR_5g041570 53.623 69 32 0 17 85 166 234 5.58e-21 91.3
MS.gene45309.t1 MTR_5g049190 47.059 68 36 0 17 84 51 118 7.77e-21 88.2
MS.gene45309.t1 MTR_4g128190 50.000 70 34 1 16 84 32 101 1.13e-20 87.8
MS.gene45309.t1 MTR_4g029540 45.918 98 49 3 16 112 44 138 1.43e-20 88.6
MS.gene45309.t1 MTR_5g070020 46.377 69 37 0 17 85 154 222 2.59e-20 88.6
MS.gene45309.t1 MTR_4g082040 52.941 68 32 0 18 85 138 205 2.64e-20 89.4
MS.gene45309.t1 MTR_5g088080 45.455 77 39 2 15 90 45 119 9.42e-20 85.9
MS.gene45309.t1 MTR_5g088150 45.455 77 39 2 15 90 45 119 9.42e-20 85.9
MS.gene45309.t1 MTR_5g488210 45.455 77 39 2 15 90 45 119 9.42e-20 85.9
MS.gene45309.t1 MTR_5g088640 45.455 77 39 2 15 90 45 119 1.15e-19 85.9
MS.gene45309.t1 MTR_3g463400 47.059 68 36 0 18 85 166 233 1.61e-19 87.4
MS.gene45309.t1 MTR_5g488170 46.053 76 38 2 16 90 46 119 1.80e-19 84.7
MS.gene45309.t1 MTR_5g088610 34.454 119 70 2 15 125 42 160 2.60e-19 85.9
MS.gene45309.t1 MTR_6g027340 38.938 113 63 3 17 123 48 160 2.64e-19 83.6
MS.gene45309.t1 MTR_7g451170 34.091 132 81 2 17 144 223 352 2.65e-19 86.3
MS.gene45309.t1 MTR_7g061330 46.067 89 42 1 3 85 125 213 2.69e-19 87.0
MS.gene45309.t1 MTR_7g461410 46.067 89 42 1 3 85 125 213 2.69e-19 87.0
MS.gene45309.t1 MTR_7g035350 31.313 198 99 7 18 198 258 435 3.78e-19 86.3
MS.gene45309.t1 MTR_7g061330 46.067 89 42 1 3 85 89 177 3.84e-19 86.3
MS.gene45309.t1 MTR_7g037260 37.383 107 58 1 17 123 177 274 4.29e-19 85.5
MS.gene45309.t1 MTR_4g105660 47.059 68 36 0 18 85 213 280 5.60e-19 85.5
MS.gene45309.t1 MTR_6g027360 38.596 114 64 3 17 124 110 223 8.15e-19 84.0
MS.gene45309.t1 MTR_3g110028 51.471 68 33 0 18 85 118 185 1.21e-18 85.1
MS.gene45309.t1 MTR_1g026870 51.471 68 33 0 18 85 118 185 1.34e-18 85.1
MS.gene45309.t1 MTR_5g082910 53.030 66 31 0 17 82 51 116 1.38e-18 83.2
MS.gene45309.t1 MTR_3g077650 43.478 69 39 0 17 85 213 281 1.54e-18 84.3
MS.gene45309.t1 MTR_4g088015 38.542 96 50 1 18 113 254 340 1.92e-18 84.0
MS.gene45309.t1 MTR_7g086960 54.412 68 31 0 18 85 122 189 3.70e-18 82.8
MS.gene45309.t1 MTR_6g027370 34.884 129 69 3 17 145 131 244 4.96e-18 82.4
MS.gene45309.t1 MTR_7g450950 36.082 97 55 3 17 113 189 278 1.33e-17 80.9
MS.gene45309.t1 MTR_3g089045 54.412 68 31 0 18 85 49 116 1.77e-17 80.1
MS.gene45309.t1 MTR_1g057980 35.965 114 61 3 17 123 112 220 1.90e-17 80.1
MS.gene45309.t1 MTR_6g055910 50.746 67 24 1 40 106 2 59 1.37e-15 73.6
MS.gene45309.t1 MTR_5g010650 50.000 62 31 0 18 79 143 204 3.45e-15 74.7
MS.gene45309.t1 MTR_5g007300 68.182 44 14 0 15 58 97 140 4.05e-15 70.5
MS.gene45309.t1 MTR_7g037130 35.849 106 60 2 17 116 177 280 6.86e-15 73.6
MS.gene45309.t1 MTR_2g096380 34.483 116 63 3 40 154 1 104 3.06e-14 68.9
MS.gene45309.t1 MTR_1g085880 38.835 103 60 2 15 114 45 147 4.39e-14 68.9
MS.gene45309.t1 MTR_1g085770 38.835 103 60 2 15 114 45 147 8.11e-14 70.1
MS.gene45309.t1 MTR_7g061550 46.032 63 34 0 16 78 41 103 8.77e-14 70.1
MS.gene45309.t1 MTR_4g063100 58.696 46 19 0 40 85 1 46 1.19e-13 67.8
MS.gene45309.t1 MTR_8g468380 45.205 73 40 0 21 93 58 130 3.99e-13 68.6
MS.gene45309.t1 MTR_5g038910 45.455 66 36 0 21 86 62 127 7.89e-13 67.8
MS.gene45309.t1 MTR_5g038910 45.455 66 36 0 21 86 62 127 1.18e-12 67.0
MS.gene45309.t1 MTR_2g088730 58.974 39 16 0 40 78 34 72 1.74e-11 58.9
MS.gene45309.t1 MTR_1g076150 38.793 116 60 3 55 169 33 138 7.47e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45309.t1 AT3G23250 44.134 179 79 5 16 173 46 224 2.47e-39 138
MS.gene45309.t1 AT2G31180 49.677 155 64 3 15 169 45 185 3.55e-39 136
MS.gene45309.t1 AT1G06180 45.161 155 71 3 15 169 45 185 1.36e-35 127
MS.gene45309.t1 AT4G38620 51.351 111 52 1 13 123 43 151 3.34e-35 127
MS.gene45309.t1 AT3G13540 41.765 170 77 4 15 168 56 219 6.56e-35 125
MS.gene45309.t1 AT5G14750 73.239 71 19 0 15 85 49 119 8.69e-35 124
MS.gene45309.t1 AT5G14750 75.000 68 17 0 18 85 18 85 1.15e-34 122
MS.gene45309.t1 AT3G27920 60.465 86 34 0 15 100 47 132 3.46e-34 123
MS.gene45309.t1 AT1G79180 65.060 83 29 0 16 98 48 130 1.29e-33 123
MS.gene45309.t1 AT5G35550 71.622 74 21 0 12 85 44 117 1.58e-33 122
MS.gene45309.t1 AT5G40330 71.831 71 20 0 15 85 45 115 1.60e-33 121
MS.gene45309.t1 AT5G35550 73.239 71 19 0 15 85 50 120 1.91e-33 122
MS.gene45309.t1 AT1G79180 65.060 83 29 0 16 98 81 163 1.97e-33 123
MS.gene45309.t1 AT5G12870 71.831 71 20 0 15 85 51 121 5.37e-33 121
MS.gene45309.t1 AT1G16490 70.000 70 21 0 16 85 48 117 5.81e-33 121
MS.gene45309.t1 AT4G28110 68.056 72 23 0 16 87 46 117 1.20e-32 120
MS.gene45309.t1 AT1G22640 37.647 170 75 3 13 168 43 195 1.32e-32 119
MS.gene45309.t1 AT1G74430 70.423 71 21 0 15 85 45 115 2.36e-32 119
MS.gene45309.t1 AT3G61250 70.833 72 21 0 16 87 46 117 2.66e-32 120
MS.gene45309.t1 AT5G16770 68.056 72 23 0 16 87 46 117 2.90e-32 120
MS.gene45309.t1 AT5G16770 68.056 72 23 0 16 87 46 117 2.90e-32 120
MS.gene45309.t1 AT5G26660 62.353 85 31 1 1 85 1 84 3.75e-32 120
MS.gene45309.t1 AT2G16720 65.333 75 26 0 13 87 43 117 3.88e-32 119
MS.gene45309.t1 AT4G01680 56.731 104 33 2 15 106 45 148 4.21e-32 118
MS.gene45309.t1 AT5G16770 68.056 72 23 0 16 87 46 117 4.53e-32 120
MS.gene45309.t1 AT5G16770 68.056 72 23 0 16 87 46 117 4.53e-32 120
MS.gene45309.t1 AT1G09540 46.099 141 70 1 16 156 46 180 4.73e-32 120
MS.gene45309.t1 AT3G02940 68.056 72 23 0 16 87 46 117 7.69e-32 119
MS.gene45309.t1 AT1G35515 58.228 79 33 0 13 91 43 121 8.02e-32 116
MS.gene45309.t1 AT4G01680 56.190 105 34 2 14 106 56 160 9.26e-32 119
MS.gene45309.t1 AT4G01680 56.731 104 33 2 15 106 45 148 9.40e-32 119
MS.gene45309.t1 AT3G02940 68.056 72 23 0 16 87 46 117 1.28e-31 119
MS.gene45309.t1 AT3G02940 68.056 72 23 0 16 87 46 117 1.28e-31 119
MS.gene45309.t1 AT5G54230 67.123 73 24 0 15 87 45 117 1.30e-31 118
MS.gene45309.t1 AT5G52600 72.222 72 20 0 15 86 45 116 1.43e-31 115
MS.gene45309.t1 AT5G06100 66.197 71 24 0 15 85 65 135 1.50e-31 120
MS.gene45309.t1 AT4G09460 62.667 75 28 0 13 87 43 117 1.80e-31 116
MS.gene45309.t1 AT3G01140 71.233 73 21 0 15 87 45 117 2.13e-31 118
MS.gene45309.t1 AT4G34990 50.847 118 46 2 13 130 43 148 2.18e-31 117
MS.gene45309.t1 AT3G11440 64.789 71 25 0 15 85 74 144 2.23e-31 120
MS.gene45309.t1 AT5G06100 66.197 71 24 0 15 85 65 135 2.84e-31 120
MS.gene45309.t1 AT5G06100 66.197 71 24 0 15 85 65 135 2.84e-31 120
MS.gene45309.t1 AT5G06100 66.197 71 24 0 15 85 65 135 2.84e-31 120
MS.gene45309.t1 AT5G06100 66.197 71 24 0 15 85 65 135 2.84e-31 120
MS.gene45309.t1 AT3G12820 67.143 70 23 0 18 87 2 71 2.94e-31 114
MS.gene45309.t1 AT3G11440 64.789 71 25 0 15 85 74 144 3.80e-31 120
MS.gene45309.t1 AT3G11440 64.789 71 25 0 15 85 74 144 3.80e-31 120
MS.gene45309.t1 AT3G11440 64.789 71 25 0 15 85 74 144 3.80e-31 120
MS.gene45309.t1 AT3G01140 71.233 73 21 0 15 87 88 160 3.87e-31 119
MS.gene45309.t1 AT4G05100 65.753 73 25 0 15 87 46 118 4.22e-31 117
MS.gene45309.t1 AT5G65230 68.056 72 23 0 16 87 46 117 4.53e-31 117
MS.gene45309.t1 AT5G26660 70.000 70 21 0 16 85 46 115 5.81e-31 117
MS.gene45309.t1 AT5G10280 68.056 72 23 0 16 87 46 117 5.93e-31 117
MS.gene45309.t1 AT3G12820 60.465 86 27 1 2 87 41 119 7.04e-31 114
MS.gene45309.t1 AT5G07700 64.474 76 27 0 16 91 46 121 1.03e-30 116
MS.gene45309.t1 AT5G07700 64.474 76 27 0 16 91 46 121 1.03e-30 116
MS.gene45309.t1 AT3G08500 69.014 71 22 0 15 85 63 133 1.06e-30 116
MS.gene45309.t1 AT5G62320 64.384 73 26 0 15 87 53 125 1.09e-30 114
MS.gene45309.t1 AT5G15310 68.493 73 23 0 15 87 45 117 1.12e-30 116
MS.gene45309.t1 AT1G56160 63.095 84 24 1 2 85 41 117 1.13e-30 115
MS.gene45309.t1 AT4G26930 65.217 69 24 0 16 84 53 121 1.16e-30 117
MS.gene45309.t1 AT5G15310 68.493 73 23 0 15 87 45 117 1.19e-30 116
MS.gene45309.t1 AT4G12350 65.753 73 25 0 15 87 45 117 1.19e-30 115
MS.gene45309.t1 AT5G16600 40.940 149 72 4 15 156 45 184 1.34e-30 116
MS.gene45309.t1 AT5G15310 67.568 74 24 0 15 88 45 118 1.36e-30 114
MS.gene45309.t1 AT3G49690 56.818 88 32 1 7 88 32 119 1.51e-30 115
MS.gene45309.t1 AT3G13890 63.158 76 28 0 12 87 51 126 1.96e-30 116
MS.gene45309.t1 AT4G21440 66.667 72 24 0 16 87 46 117 2.38e-30 115
MS.gene45309.t1 AT3G13890 66.667 72 24 0 16 87 46 117 2.44e-30 116
MS.gene45309.t1 AT1G57560 63.889 72 26 0 16 87 46 117 2.82e-30 114
MS.gene45309.t1 AT1G57560 63.889 72 26 0 16 87 46 117 3.21e-30 114
MS.gene45309.t1 AT4G17785 56.977 86 30 1 2 87 40 118 3.77e-30 115
MS.gene45309.t1 AT4G17785 56.977 86 30 1 2 87 40 118 3.85e-30 115
MS.gene45309.t1 AT5G55020 66.667 69 23 0 16 84 60 128 4.67e-30 117
MS.gene45309.t1 AT3G01530 65.714 70 24 0 15 84 58 127 4.72e-30 111
MS.gene45309.t1 AT4G22680 63.014 73 27 0 15 87 45 117 5.82e-30 113
MS.gene45309.t1 AT3G12720 61.111 72 28 0 16 87 56 127 8.98e-30 113
MS.gene45309.t1 AT3G23250 40.719 167 78 5 28 173 1 167 1.02e-29 111
MS.gene45309.t1 AT5G57620 60.811 74 29 0 14 87 45 118 1.20e-29 114
MS.gene45309.t1 AT5G56110 66.197 71 24 0 15 85 45 115 1.35e-29 113
MS.gene45309.t1 AT1G18710 64.789 71 25 0 15 85 45 115 1.62e-29 112
MS.gene45309.t1 AT1G18570 67.123 73 24 0 15 87 46 118 1.67e-29 114
MS.gene45309.t1 AT5G65790 54.545 88 34 1 7 88 32 119 1.79e-29 114
MS.gene45309.t1 AT2G32460 63.380 71 26 0 15 85 51 121 1.90e-29 115
MS.gene45309.t1 AT2G32460 64.286 70 25 0 16 85 40 109 2.06e-29 115
MS.gene45309.t1 AT3G46130 59.740 77 31 0 10 86 5 81 2.07e-29 110
MS.gene45309.t1 AT5G59780 60.000 80 31 1 8 86 12 91 2.20e-29 110
MS.gene45309.t1 AT5G07690 61.842 76 29 0 16 91 46 121 2.36e-29 113
MS.gene45309.t1 AT5G14340 64.789 71 25 0 15 85 57 127 2.57e-29 111
MS.gene45309.t1 AT3G28470 41.912 136 70 2 1 127 26 161 2.76e-29 112
MS.gene45309.t1 AT4G13480 58.824 85 35 0 15 99 39 123 2.79e-29 111
MS.gene45309.t1 AT1G66230 64.789 71 25 0 15 85 45 115 3.54e-29 111
MS.gene45309.t1 AT5G60890 63.380 71 26 0 15 85 45 115 3.61e-29 111
MS.gene45309.t1 AT5G61420 60.526 76 30 0 16 91 46 121 4.14e-29 112
MS.gene45309.t1 AT2G47460 63.380 71 26 0 15 85 45 115 4.27e-29 113
MS.gene45309.t1 AT3G46130 55.294 85 38 0 2 86 7 91 4.35e-29 110
MS.gene45309.t1 AT3G27810 61.972 71 27 0 14 84 3 73 4.35e-29 108
MS.gene45309.t1 AT5G59780 57.831 83 31 1 4 86 34 112 5.41e-29 109
MS.gene45309.t1 AT1G68320 65.278 72 25 0 15 86 52 123 5.72e-29 110
MS.gene45309.t1 AT3G62610 63.380 71 26 0 15 85 45 115 7.10e-29 112
MS.gene45309.t1 AT4G37780 55.814 86 32 1 8 87 33 118 7.35e-29 111
MS.gene45309.t1 AT3G27810 56.180 89 32 2 3 84 34 122 7.85e-29 108
MS.gene45309.t1 AT3G47600 60.000 80 30 1 6 85 32 109 8.58e-29 111
MS.gene45309.t1 AT3G24310 57.647 85 36 0 15 99 51 135 8.70e-29 110
MS.gene45309.t1 AT1G74650 64.384 73 26 0 15 87 45 117 8.75e-29 111
MS.gene45309.t1 AT1G63910 63.380 71 26 0 15 85 45 115 8.83e-29 112
MS.gene45309.t1 AT5G40350 60.000 75 30 0 13 87 3 77 8.88e-29 107
MS.gene45309.t1 AT1G34670 65.278 72 25 0 16 87 46 117 9.38e-29 112
MS.gene45309.t1 AT1G08810 48.624 109 54 2 15 122 45 152 1.14e-28 110
MS.gene45309.t1 AT3G46130 56.627 83 32 1 4 86 35 113 1.44e-28 109
MS.gene45309.t1 AT5G23000 60.274 73 29 0 15 87 46 118 1.46e-28 110
MS.gene45309.t1 AT1G25340 63.514 74 27 0 13 86 49 122 1.69e-28 109
MS.gene45309.t1 AT5G40350 61.333 75 29 0 13 87 48 122 2.06e-28 107
MS.gene45309.t1 AT3G30210 48.624 109 47 2 15 122 60 160 2.35e-28 108
MS.gene45309.t1 AT2G26960 61.644 73 28 0 12 84 50 122 2.48e-28 111
MS.gene45309.t1 AT5G49330 63.380 71 26 0 15 85 45 115 3.19e-28 110
MS.gene45309.t1 AT1G74080 65.714 70 24 0 15 84 45 114 4.98e-28 109
MS.gene45309.t1 AT3G47600 63.380 71 26 0 15 85 45 115 5.88e-28 109
MS.gene45309.t1 AT2G36890 61.644 73 28 0 15 87 46 118 7.80e-28 108
MS.gene45309.t1 AT3G28910 63.380 71 26 0 15 85 45 115 1.23e-27 108
MS.gene45309.t1 AT2G47190 60.811 74 29 0 13 86 51 124 1.23e-27 107
MS.gene45309.t1 AT2G36890 61.644 73 28 0 15 87 87 159 1.61e-27 108
MS.gene45309.t1 AT5G62470 63.380 71 26 0 15 85 45 115 1.61e-27 108
MS.gene45309.t1 AT1G48000 60.811 74 29 0 13 86 63 136 1.98e-27 105
MS.gene45309.t1 AT1G25340 59.494 79 32 0 8 86 39 117 2.80e-27 106
MS.gene45309.t1 AT5G62470 64.706 68 24 0 18 85 47 114 4.96e-27 107
MS.gene45309.t1 AT1G66370 63.380 71 26 0 15 85 41 111 5.49e-27 104
MS.gene45309.t1 AT1G25340 59.494 79 32 0 8 86 39 117 5.76e-27 106
MS.gene45309.t1 AT5G52260 45.865 133 44 3 16 146 46 152 6.82e-27 105
MS.gene45309.t1 AT3G48920 62.319 69 26 0 16 84 52 120 1.38e-26 103
MS.gene45309.t1 AT4G25560 62.857 70 26 0 16 85 44 113 5.36e-26 103
MS.gene45309.t1 AT3G53200 56.944 72 31 0 14 85 8 79 7.81e-26 100
MS.gene45309.t1 AT3G53200 53.571 84 32 1 2 85 36 112 2.00e-25 100
MS.gene45309.t1 AT5G14750 70.690 58 17 0 28 85 1 58 4.16e-25 97.1
MS.gene45309.t1 AT5G14750 70.690 58 17 0 28 85 1 58 4.16e-25 97.1
MS.gene45309.t1 AT5G49620 44.531 128 60 2 16 143 60 176 6.52e-25 100
MS.gene45309.t1 AT3G06490 47.826 115 45 2 15 123 46 151 1.83e-24 99.8
MS.gene45309.t1 AT1G22640 61.667 60 23 0 28 87 1 60 2.09e-23 94.4
MS.gene45309.t1 AT1G66380 63.889 72 26 0 14 85 7 78 2.87e-23 91.3
MS.gene45309.t1 AT1G71030 56.716 67 29 0 21 87 5 71 1.04e-22 92.0
MS.gene45309.t1 AT1G71030 56.716 67 29 0 21 87 19 85 1.51e-22 91.7
MS.gene45309.t1 AT3G09230 55.556 72 32 0 17 88 87 158 2.03e-22 95.1
MS.gene45309.t1 AT1G66380 64.789 71 25 0 15 85 41 111 2.27e-22 89.7
MS.gene45309.t1 AT4G33450 52.703 74 35 0 17 90 51 124 5.73e-22 91.7
MS.gene45309.t1 AT1G56650 46.957 115 57 2 15 127 41 153 5.76e-22 91.7
MS.gene45309.t1 AT1G17950 57.143 70 30 0 17 86 37 106 6.64e-22 91.3
MS.gene45309.t1 AT1G69560 46.591 88 41 1 4 85 120 207 2.05e-21 91.7
MS.gene45309.t1 AT4G37260 52.857 70 33 0 17 86 45 114 2.26e-21 91.3
MS.gene45309.t1 AT1G69560 46.591 88 41 1 4 85 136 223 2.42e-21 91.7
MS.gene45309.t1 AT1G66390 63.380 71 26 0 15 85 41 111 3.03e-21 89.7
MS.gene45309.t1 AT5G49620 40.141 142 60 3 16 143 60 190 3.27e-21 90.9
MS.gene45309.t1 AT3G27785 42.857 98 49 2 17 113 221 312 4.17e-21 91.7
MS.gene45309.t1 AT1G26780 53.623 69 32 0 17 85 130 198 5.95e-21 90.5
MS.gene45309.t1 AT1G26780 53.623 69 32 0 17 85 130 198 6.09e-21 89.4
MS.gene45309.t1 AT2G25230 49.315 73 35 1 17 89 58 128 1.19e-20 87.8
MS.gene45309.t1 AT5G67300 52.857 70 33 0 17 86 38 107 1.25e-20 89.0
MS.gene45309.t1 AT3G55730 37.903 124 62 2 18 126 89 212 3.01e-20 89.0
MS.gene45309.t1 AT3G60460 54.167 72 32 1 16 86 45 116 3.12e-20 87.8
MS.gene45309.t1 AT5G11510 54.412 68 31 0 18 85 114 181 3.47e-20 89.7
MS.gene45309.t1 AT5G11510 54.412 68 31 0 18 85 114 181 3.47e-20 89.7
MS.gene45309.t1 AT5G11510 54.412 68 31 0 18 85 114 181 3.47e-20 89.7
MS.gene45309.t1 AT2G23290 51.429 70 34 0 17 86 45 114 4.30e-20 87.4
MS.gene45309.t1 AT5G11510 35.616 146 64 4 18 163 114 229 4.41e-20 89.4
MS.gene45309.t1 AT5G11510 54.412 68 31 0 18 85 114 181 4.71e-20 89.4
MS.gene45309.t1 AT5G40360 49.254 67 34 0 18 84 191 257 5.07e-20 88.2
MS.gene45309.t1 AT2G39880 52.113 71 34 0 18 88 83 153 5.33e-20 88.2
MS.gene45309.t1 AT2G26950 43.182 88 45 2 22 106 56 141 6.52e-20 87.8
MS.gene45309.t1 AT3G50060 42.857 84 48 0 17 100 38 121 8.70e-20 86.7
MS.gene45309.t1 AT5G02320 37.419 155 81 5 18 167 100 243 1.27e-19 87.8
MS.gene45309.t1 AT5G02320 37.419 155 81 5 18 167 160 303 1.38e-19 87.8
MS.gene45309.t1 AT5G02320 37.419 155 81 5 18 167 160 303 1.38e-19 87.8
MS.gene45309.t1 AT5G17800 51.429 70 34 0 16 85 124 193 1.45e-19 86.3
MS.gene45309.t1 AT1G73410 51.136 88 37 2 4 85 19 106 1.47e-19 85.1
MS.gene45309.t1 AT4G18770 47.059 68 36 0 18 85 250 317 2.44e-19 86.7
MS.gene45309.t1 AT1G73410 51.136 88 37 2 4 85 19 106 2.57e-19 83.6
MS.gene45309.t1 AT3G09370 34.722 144 82 2 18 161 168 299 3.54e-19 86.7
MS.gene45309.t1 AT3G09370 34.722 144 82 2 18 161 163 294 3.75e-19 86.7
MS.gene45309.t1 AT3G09370 34.722 144 82 2 18 161 176 307 4.38e-19 86.3
MS.gene45309.t1 AT5G58850 44.118 68 38 0 18 85 138 205 1.60e-18 84.3
MS.gene45309.t1 AT3G29020 48.529 68 35 0 18 85 98 165 2.96e-18 81.3
MS.gene45309.t1 AT4G32730 50.000 68 34 0 18 85 120 187 3.27e-18 84.0
MS.gene45309.t1 AT4G32730 50.000 68 34 0 18 85 120 187 3.27e-18 84.0
MS.gene45309.t1 AT4G32730 50.000 68 34 0 18 85 120 187 3.27e-18 84.0
MS.gene45309.t1 AT4G32730 50.000 68 34 0 18 85 120 187 3.27e-18 84.0
MS.gene45309.t1 AT3G29020 47.826 69 36 0 17 85 99 167 3.46e-18 82.4
MS.gene45309.t1 AT4G32730 50.000 68 34 0 18 85 120 187 3.59e-18 84.0
MS.gene45309.t1 AT5G11050 44.118 68 38 0 18 85 138 205 5.57e-18 82.8
MS.gene45309.t1 AT1G18960 45.122 82 39 2 14 91 39 118 2.24e-17 80.1
MS.gene45309.t1 AT5G40430 44.444 72 38 1 18 89 86 155 5.16e-17 78.2
MS.gene45309.t1 AT4G00540 48.529 68 35 0 18 85 139 206 8.38e-17 79.3
MS.gene45309.t1 AT4G00540 48.529 68 35 0 18 85 137 204 1.30e-16 79.0
MS.gene45309.t1 AT2G37630 41.053 95 50 1 16 104 38 132 2.82e-16 77.4
MS.gene45309.t1 AT5G39700 44.578 83 36 1 18 90 89 171 2.28e-15 72.4
MS.gene45309.t1 AT5G59780 59.574 47 19 0 40 86 1 47 1.18e-14 70.1
MS.gene45309.t1 AT3G46130 59.574 47 19 0 40 86 1 47 1.82e-14 70.1
MS.gene45309.t1 AT1G14350 41.892 74 43 0 21 94 61 134 2.69e-13 69.3
MS.gene45309.t1 AT1G14350 41.892 74 43 0 21 94 61 134 2.69e-13 69.3
MS.gene45309.t1 AT2G02820 41.892 74 43 0 21 94 66 139 2.80e-13 69.3
MS.gene45309.t1 AT2G02820 41.892 74 43 0 21 94 66 139 3.01e-13 69.3
MS.gene45309.t1 AT2G02820 41.892 74 43 0 21 94 66 139 3.27e-13 68.6
MS.gene45309.t1 AT4G25560 60.000 45 18 0 41 85 3 47 8.36e-13 65.9
MS.gene45309.t1 AT1G14350 42.029 69 40 0 26 94 23 91 2.53e-11 63.2
MS.gene45309.t1 AT1G14350 42.029 69 40 0 26 94 23 91 2.53e-11 63.2

Find 49 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACTTCTTTGGATGATTT+TGG 0.164698 4.3:+52951200 MS.gene45309:CDS
TTGAGGAGTAATTTGGTAAT+TGG 0.211329 4.3:-52951090 None:intergenic
AGATCACAATTCCACTTCTT+TGG 0.250501 4.3:+52951190 MS.gene45309:CDS
GGCCATTGGTGTCTGAGATT+TGG 0.260126 4.3:-52951121 None:intergenic
ATTTCACTAGATGATGAAAA+TGG 0.273660 4.3:-52951152 None:intergenic
GATGATGAAAATGGGGATAA+AGG 0.281197 4.3:-52951143 None:intergenic
TGACAAAACTTTCGGTAGTA+TGG 0.284671 4.3:-52951307 None:intergenic
ATTGCTTATGTCACTAGATA+TGG 0.291146 4.3:+52950629 None:intergenic
AACTGGATTGAGGAGTAATT+TGG 0.303507 4.3:-52951097 None:intergenic
AACCATTGCGGCTGAGTTAC+CGG 0.309509 4.3:+52950938 MS.gene45309:CDS
TAGTATATGACAAGGATATT+TGG 0.309668 4.3:+52951474 MS.gene45309:CDS
GCCATTGGTGTCTGAGATTT+GGG 0.312832 4.3:-52951120 None:intergenic
TTTGTCATGGATAATGATTT+TGG 0.329855 4.3:+52951323 MS.gene45309:CDS
TTAGGTGGCTGAATTATCTT+AGG 0.343554 4.3:+52950832 MS.gene45309:CDS
CTAGATATGGTTGCTGGAAT+TGG 0.347558 4.3:+52950642 MS.gene45309:CDS
ACTTCATTATCTGTTCTTCC+CGG 0.394324 4.3:-52950957 None:intergenic
ATTATCCATGACAAAACTTT+CGG 0.398726 4.3:-52951315 None:intergenic
ATGATGAAAATGGGGATAAA+GGG 0.400273 4.3:-52951142 None:intergenic
CACTGTTCCACTTGGTGTGT+TGG 0.421769 4.3:-52951279 None:intergenic
TTTCACTAGATGATGAAAAT+GGG 0.434641 4.3:-52951151 None:intergenic
GGTGTCTGAGATTTGGGAAC+TGG 0.438068 4.3:-52951114 None:intergenic
ATGTCACTAGATATGGTTGC+TGG 0.454705 4.3:+52950636 MS.gene45309:CDS
GAGATTTGGGAACTGGATTG+AGG 0.491808 4.3:-52951107 None:intergenic
ACCAAAATCATCCAAAGAAG+TGG 0.496803 4.3:-52951201 None:intergenic
CTTAGGCCTAATATCAAAAG+AGG 0.501825 4.3:+52950849 MS.gene45309:CDS
TGGGACATGTCAACTTCATA+TGG 0.510490 4.3:-52951398 None:intergenic
AGATTCATTTATAGAAGATG+TGG 0.523349 4.3:+52951229 MS.gene45309:CDS
TTTCAGGTCTTTCAAGGTGT+GGG 0.533782 4.3:+52950796 MS.gene45309:intron
ATTTCAGGTCTTTCAAGGTG+TGG 0.533848 4.3:+52950795 MS.gene45309:intron
TCTTGAGAGAAGTGTGCCAA+TGG 0.538235 4.3:-52950986 None:intergenic
TCCCGGTAACTCAGCCGCAA+TGG 0.540711 4.3:-52950940 None:intergenic
ACCATTGCGGCTGAGTTACC+GGG 0.548881 4.3:+52950939 MS.gene45309:CDS
ATAATGAAGTGAAGAACCAT+TGG 0.556377 4.3:+52950970 MS.gene45309:CDS
GGATATATCTCTCCCTTGTG+TGG 0.558281 4.3:-52951069 None:intergenic
GTGGGAAGAGTTGTAGACTT+AGG 0.560267 4.3:+52950814 MS.gene45309:CDS
AAAGGTATCAGTAGTTCAGT+TGG 0.561036 4.3:-52951425 None:intergenic
AAACTTTACTCAACAAGAAG+AGG 0.563987 4.3:+52950872 MS.gene45309:CDS
AAATGGGGATAAAGGGCCAT+TGG 0.578413 4.3:-52951135 None:intergenic
AATCTTTCCAACACACCAAG+TGG 0.595510 4.3:+52951272 MS.gene45309:CDS
ACTACTGATACCTTTGTCGA+TGG 0.606426 4.3:+52951433 MS.gene45309:CDS
TCAGTAGTTCAGTTGGAACG+TGG 0.618063 4.3:-52951418 None:intergenic
TTCACTAGATGATGAAAATG+GGG 0.623589 4.3:-52951150 None:intergenic
GGAATTGTGATCTAAAGATG+TGG 0.642475 4.3:-52951180 None:intergenic
GAATAGATGGTCAACCATTG+CGG 0.644939 4.3:+52950926 MS.gene45309:CDS
GACATAATTGAATCCACACA+AGG 0.645918 4.3:+52951056 MS.gene45309:CDS
CAGTAGTTCAGTTGGAACGT+GGG 0.647890 4.3:-52951417 None:intergenic
TCCCAAATCTCAGACACCAA+TGG 0.651151 4.3:+52951119 MS.gene45309:CDS
GGAAGAGTTGTAGACTTAGG+TGG 0.671039 4.3:+52950817 MS.gene45309:CDS
ACATAATTGAATCCACACAA+GGG 0.713140 4.3:+52951057 MS.gene45309:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCTATAGTATATGACA+AGG + chr4.3:52951466-52951485 MS.gene45309:CDS 20.0%
! AGATTCATTTATAGAAGATG+TGG + chr4.3:52951229-52951248 MS.gene45309:CDS 25.0%
! ATTATCCATGACAAAACTTT+CGG - chr4.3:52951318-52951337 None:intergenic 25.0%
! ATTTCACTAGATGATGAAAA+TGG - chr4.3:52951155-52951174 None:intergenic 25.0%
! TAGTATATGACAAGGATATT+TGG + chr4.3:52951474-52951493 MS.gene45309:CDS 25.0%
! TATATTTACCTGCAAACTTA+GGG - chr4.3:52950676-52950695 None:intergenic 25.0%
! TTTCACTAGATGATGAAAAT+GGG - chr4.3:52951154-52951173 None:intergenic 25.0%
!! AAGTTTCCTCTTTTGATATT+AGG - chr4.3:52950858-52950877 None:intergenic 25.0%
!! TGACCATAAATTTTATCTCA+AGG - chr4.3:52950740-52950759 None:intergenic 25.0%
!! TTTGTCATGGATAATGATTT+TGG + chr4.3:52951323-52951342 MS.gene45309:CDS 25.0%
!!! ATTGCATTGTTTTTGATTTC+AGG + chr4.3:52950780-52950799 MS.gene45309:intron 25.0%
AAACTTTACTCAACAAGAAG+AGG + chr4.3:52950872-52950891 MS.gene45309:CDS 30.0%
ACATAATTGAATCCACACAA+GGG + chr4.3:52951057-52951076 MS.gene45309:CDS 30.0%
ATAAAAAGCTTGGGAATAGA+TGG + chr4.3:52950913-52950932 MS.gene45309:CDS 30.0%
ATAATGAAGTGAAGAACCAT+TGG + chr4.3:52950970-52950989 MS.gene45309:CDS 30.0%
ATCAGAATGCATAAAAAGCT+TGG + chr4.3:52950903-52950922 MS.gene45309:CDS 30.0%
ATGATGAAAATGGGGATAAA+GGG - chr4.3:52951145-52951164 None:intergenic 30.0%
CAGGTAAATATAGAACTTTG+CGG + chr4.3:52950684-52950703 MS.gene45309:intron 30.0%
CCTCCTTGAGATAAAATTTA+TGG + chr4.3:52950734-52950753 MS.gene45309:intron 30.0%
CTATATTTACCTGCAAACTT+AGG - chr4.3:52950677-52950696 None:intergenic 30.0%
TCAGAATGCATAAAAAGCTT+GGG + chr4.3:52950904-52950923 MS.gene45309:CDS 30.0%
TTCACTAGATGATGAAAATG+GGG - chr4.3:52951153-52951172 None:intergenic 30.0%
! AAGATGTGGATGAAAGTTTT+TGG + chr4.3:52951243-52951262 MS.gene45309:CDS 30.0%
! AAGCTTTTTAGATGCTTACA+AGG + chr4.3:52951346-52951365 MS.gene45309:CDS 30.0%
! CCATAAATTTTATCTCAAGG+AGG - chr4.3:52950737-52950756 None:intergenic 30.0%
! TTGAGGAGTAATTTGGTAAT+TGG - chr4.3:52951093-52951112 None:intergenic 30.0%
!!! TGTCAACAGTTGATAGTTTT+TGG + chr4.3:52951369-52951388 MS.gene45309:CDS 30.0%
!!! TTTTGATTTCAGGTCTTTCA+AGG + chr4.3:52950790-52950809 MS.gene45309:intron 30.0%
AACTGGATTGAGGAGTAATT+TGG - chr4.3:52951100-52951119 None:intergenic 35.0%
ACCAAAATCATCCAAAGAAG+TGG - chr4.3:52951204-52951223 None:intergenic 35.0%
ACTTCATTATCTGTTCTTCC+CGG - chr4.3:52950960-52950979 None:intergenic 35.0%
AGATCACAATTCCACTTCTT+TGG + chr4.3:52951190-52951209 MS.gene45309:CDS 35.0%
CTTAGGCCTAATATCAAAAG+AGG + chr4.3:52950849-52950868 MS.gene45309:CDS 35.0%
GACATAATTGAATCCACACA+AGG + chr4.3:52951056-52951075 MS.gene45309:CDS 35.0%
GATGATGAAAATGGGGATAA+AGG - chr4.3:52951146-52951165 None:intergenic 35.0%
GGAATTGTGATCTAAAGATG+TGG - chr4.3:52951183-52951202 None:intergenic 35.0%
TGACAAAACTTTCGGTAGTA+TGG - chr4.3:52951310-52951329 None:intergenic 35.0%
TTAGGTGGCTGAATTATCTT+AGG + chr4.3:52950832-52950851 MS.gene45309:CDS 35.0%
! TCCACTTCTTTGGATGATTT+TGG + chr4.3:52951200-52951219 MS.gene45309:CDS 35.0%
! TTTTCAGATTCCATCGACAA+AGG - chr4.3:52951446-52951465 None:intergenic 35.0%
!! AAAGGTATCAGTAGTTCAGT+TGG - chr4.3:52951428-52951447 None:intergenic 35.0%
!! TACTACCGAAAGTTTTGTCA+TGG + chr4.3:52951310-52951329 MS.gene45309:CDS 35.0%
AATCTTTCCAACACACCAAG+TGG + chr4.3:52951272-52951291 MS.gene45309:CDS 40.0%
ACTACTGATACCTTTGTCGA+TGG + chr4.3:52951433-52951452 MS.gene45309:CDS 40.0%
ATGTCACTAGATATGGTTGC+TGG + chr4.3:52950636-52950655 MS.gene45309:CDS 40.0%
CTAGATATGGTTGCTGGAAT+TGG + chr4.3:52950642-52950661 MS.gene45309:CDS 40.0%
GAATAGATGGTCAACCATTG+CGG + chr4.3:52950926-52950945 MS.gene45309:CDS 40.0%
TGGGACATGTCAACTTCATA+TGG - chr4.3:52951401-52951420 None:intergenic 40.0%
! ATTTCAGGTCTTTCAAGGTG+TGG + chr4.3:52950795-52950814 MS.gene45309:intron 40.0%
! TTTCAGGTCTTTCAAGGTGT+GGG + chr4.3:52950796-52950815 MS.gene45309:intron 40.0%
!! AGAACTTTGCGGTATTGACT+TGG + chr4.3:52950695-52950714 MS.gene45309:intron 40.0%
!! GAACTTTGCGGTATTGACTT+GGG + chr4.3:52950696-52950715 MS.gene45309:intron 40.0%
AAATGGGGATAAAGGGCCAT+TGG - chr4.3:52951138-52951157 None:intergenic 45.0%
CAGTAGTTCAGTTGGAACGT+GGG - chr4.3:52951420-52951439 None:intergenic 45.0%
GAGATTTGGGAACTGGATTG+AGG - chr4.3:52951110-52951129 None:intergenic 45.0%
GGAAGAGTTGTAGACTTAGG+TGG + chr4.3:52950817-52950836 MS.gene45309:CDS 45.0%
GGATATATCTCTCCCTTGTG+TGG - chr4.3:52951072-52951091 None:intergenic 45.0%
GTGGGAAGAGTTGTAGACTT+AGG + chr4.3:52950814-52950833 MS.gene45309:CDS 45.0%
TCAGTAGTTCAGTTGGAACG+TGG - chr4.3:52951421-52951440 None:intergenic 45.0%
TCCCAAATCTCAGACACCAA+TGG + chr4.3:52951119-52951138 MS.gene45309:CDS 45.0%
! GCCATTGGTGTCTGAGATTT+GGG - chr4.3:52951123-52951142 None:intergenic 45.0%
! TCTTGAGAGAAGTGTGCCAA+TGG - chr4.3:52950989-52951008 None:intergenic 45.0%
!! TGGTTTTGCACTGTTCCACT+TGG - chr4.3:52951290-52951309 None:intergenic 45.0%
AACCATTGCGGCTGAGTTAC+CGG + chr4.3:52950938-52950957 MS.gene45309:CDS 50.0%
CGACAACTCCCTAAGTTTGC+AGG + chr4.3:52950665-52950684 MS.gene45309:intron 50.0%
! GGCCATTGGTGTCTGAGATT+TGG - chr4.3:52951124-52951143 None:intergenic 50.0%
! GGTGTCTGAGATTTGGGAAC+TGG - chr4.3:52951117-52951136 None:intergenic 50.0%
!! CACTGTTCCACTTGGTGTGT+TGG - chr4.3:52951282-52951301 None:intergenic 50.0%
ACCATTGCGGCTGAGTTACC+GGG + chr4.3:52950939-52950958 MS.gene45309:CDS 55.0%
!! GCGGTATTGACTTGGGACCT+GGG + chr4.3:52950703-52950722 MS.gene45309:intron 55.0%
!! TGCGGTATTGACTTGGGACC+TGG + chr4.3:52950702-52950721 MS.gene45309:intron 55.0%
TCCCGGTAACTCAGCCGCAA+TGG - chr4.3:52950943-52950962 None:intergenic 60.0%
! TCAAGGAGGAGCACACTCCC+AGG - chr4.3:52950723-52950742 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 52950636 52951502 52950636 ID=MS.gene45309
chr4.3 mRNA 52950636 52951502 52950636 ID=MS.gene45309.t1;Parent=MS.gene45309
chr4.3 exon 52950636 52950678 52950636 ID=MS.gene45309.t1.exon1;Parent=MS.gene45309.t1
chr4.3 CDS 52950636 52950678 52950636 ID=cds.MS.gene45309.t1;Parent=MS.gene45309.t1
chr4.3 exon 52950802 52951502 52950802 ID=MS.gene45309.t1.exon2;Parent=MS.gene45309.t1
chr4.3 CDS 52950802 52951502 52950802 ID=cds.MS.gene45309.t1;Parent=MS.gene45309.t1
Gene Sequence

>MS.gene45309

ATGTCACTAGATATGGTTGCTGGAATTGGCGACAACTCCCTAAGTTTGCAGGTAAATATAGAACTTTGCGGTATTGACTTGGGACCTGGGAGTGTGCTCCTCCTTGAGATAAAATTTATGGTCAAATAACAAAATTTACTCACTATTGCATTGTTTTTGATTTCAGGTCTTTCAAGGTGTGGGAAGAGTTGTAGACTTAGGTGGCTGAATTATCTTAGGCCTAATATCAAAAGAGGAAACTTTACTCAACAAGAAGAGGAGTTGATTATCAGAATGCATAAAAAGCTTGGGAATAGATGGTCAACCATTGCGGCTGAGTTACCGGGAAGAACAGATAATGAAGTGAAGAACCATTGGCACACTTCTCTCAAGAAGAGAGCTATAGATAACATAGTCACGAATGAAGAAACGAAATCAAAAGACATAATTGAATCCACACAAGGGAGAGATATATCCAATTACCAAATTACTCCTCAATCCAGTTCCCAAATCTCAGACACCAATGGCCCTTTATCCCCATTTTCATCATCTAGTGAAATCACTTCCACATCTTTAGATCACAATTCCACTTCTTTGGATGATTTTGGTTTTCTAGATTCATTTATAGAAGATGTGGATGAAAGTTTTTGGCTTCATAATCTTTCCAACACACCAAGTGGAACAGTGCAAAACCATACTACCGAAAGTTTTGTCATGGATAATGATTTTGGAAGCTTTTTAGATGCTTACAAGGTGTCAACAGTTGATAGTTTTTGGACACAACCATATGAAGTTGACATGTCCCACGTTCCAACTGAACTACTGATACCTTTGTCGATGGAATCTGAAAAATTTTCTATAGTATATGACAAGGATATTTGGAGTTGA
Protein sequence

>MS.gene45309.t1

MSLDMVAGIGDNSLSLSRCGKSCRLRWLNYLRPNIKRGNFTQQEEELIIRMHKKLGNRWSTIAAELPGRTDNEVKNHWHTSLKKRAIDNIVTNEETKSKDIIESTQGRDISNYQITPQSSSQISDTNGPLSPFSSSSEITSTSLDHNSTSLDDFGFLDSFIEDVDESFWLHNLSNTPSGTVQNHTTESFVMDNDFGSFLDAYKVSTVDSFWTQPYEVDMSHVPTELLIPLSMESEKFSIVYDKDIWS