AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45538

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45538.t1 MTR_2g097800 84.000 325 22 6 1 299 1 321 0.0 519
MS.gene45538.t1 MTR_4g064947 38.077 260 128 7 73 299 118 377 2.31e-44 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45538.t1 AT5G59050 35.806 310 115 18 25 299 52 312 4.77e-21 91.7

Find 68 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTACGCTAACGTGGTTAA+AGG 0.245389 2.1:-6362718 MS.gene45538:CDS
AAATTAAAGCCATTGAATTA+AGG 0.289984 2.1:-6362567 MS.gene45538:CDS
GCACAACTCTTGCTGGTATA+AGG 0.306651 2.1:+6361106 None:intergenic
CCTACGCTAACGTGGTTAAA+GGG 0.390281 2.1:-6362717 MS.gene45538:CDS
AAAGCCTGCACAACTCTTGC+TGG 0.391708 2.1:+6361099 None:intergenic
ACCTGTCCCACTTCTTGAAC+CGG 0.402912 2.1:+6362387 None:intergenic
CTCCGCCAGCTACACCTTGT+TGG 0.404982 2.1:-6362750 MS.gene45538:CDS
GGAGGGACGCCAACAACTTT+GGG 0.411943 2.1:+6361051 None:intergenic
GAGGCAGAATCATATCATTC+TGG 0.418235 2.1:+6359207 None:intergenic
GTCTTCCAACAAGGTGTAGC+TGG 0.435910 2.1:+6362745 None:intergenic
TGGAGGGACGCCAACAACTT+TGG 0.438518 2.1:+6361050 None:intergenic
GAGATTCAGAAGCAAGGTAA+TGG 0.461458 2.1:-6362505 MS.gene45538:CDS
GCAACTACACTTTGACAAAA+CGG 0.470788 2.1:-6361076 MS.gene45538:CDS
CCACTGGTCTGCAATGGAGC+AGG 0.476520 2.1:+6362445 None:intergenic
CCAGTTCGGAATTGTGACTC+TGG 0.478083 2.1:+6362978 None:intergenic
ATATGATTCTGCCTCAAGAA+TGG 0.490516 2.1:-6359199 MS.gene45538:CDS
ATGACCCTTCTGAGCTCCCT+TGG 0.499706 2.1:+6362785 None:intergenic
TATACCAGCAAGAGTTGTGC+AGG 0.500359 2.1:-6361103 MS.gene45538:CDS
GCTCCATTGCAGACCAGTGG+TGG 0.500459 2.1:-6362442 MS.gene45538:CDS
CTGCATCATTCCTCCACCAC+TGG 0.505752 2.1:+6362429 None:intergenic
GTGGGATTTAATTAGTTCAC+CGG 0.508002 2.1:-6362839 MS.gene45538:CDS
TGTAACCAAGGGAGCTCAGA+AGG 0.515050 2.1:-6362790 MS.gene45538:CDS
CCAGAGTCACAATTCCGAAC+TGG 0.519755 2.1:-6362978 MS.gene45538:intron
TCCGGTTCAAGAAGTGGGAC+AGG 0.522917 2.1:-6362388 MS.gene45538:CDS
CCTCCACCACTGGTCTGCAA+TGG 0.524420 2.1:+6362439 None:intergenic
ATCACACAAAGCATTGATTG+AGG 0.524445 2.1:-6362593 MS.gene45538:intron
CCATTGCAGACCAGTGGTGG+AGG 0.531905 2.1:-6362439 MS.gene45538:CDS
AAAACGGCTCCCAAAGTTGT+TGG 0.534159 2.1:-6361060 MS.gene45538:CDS
GGTGGGTCCGGTTCAAGAAG+TGG 0.535246 2.1:-6362394 MS.gene45538:CDS
GTGATGAAATCCTCGTCTGT+TGG 0.538601 2.1:+6363079 None:intergenic
GTGAAAACATACCTTCCCTA+TGG 0.540528 2.1:+6359267 None:intergenic
ATTCAGAAGCAAGGTAATGG+AGG 0.545729 2.1:-6362502 MS.gene45538:CDS
GGAAACATATGGTACCAGTT+CGG 0.547360 2.1:+6362964 None:intergenic
CTCCCTTGGTTACAACTCAC+CGG 0.562393 2.1:+6362799 None:intergenic
CAGTTCGGAATTGTGACTCT+GGG 0.562437 2.1:+6362979 None:intergenic
CAGTGGTGGAGGAATGATGC+AGG 0.565231 2.1:-6362428 MS.gene45538:CDS
GCGACTTCTAAACAGAATCA+TGG 0.566085 2.1:-6362661 MS.gene45538:CDS
GAATGGTACCACGGAGTGGA+GGG 0.567764 2.1:+6361034 None:intergenic
CTTCAATATGTCCATTCTTG+AGG 0.572811 2.1:+6359188 None:intergenic
GGATTCAACTCTGTGGTCAC+CGG 0.580045 2.1:-6362818 MS.gene45538:CDS
TTACATCAAGCAGCAAAATG+AGG 0.589469 2.1:-6362536 MS.gene45538:CDS
GGTGACCACAGAGTTGAATC+CGG 0.590456 2.1:+6362820 None:intergenic
CTACGCTAACGTGGTTAAAG+GGG 0.595945 2.1:-6362716 MS.gene45538:CDS
GTGGGTCCGGTTCAAGAAGT+GGG 0.596347 2.1:-6362393 MS.gene45538:CDS
AGAATGGTACCACGGAGTGG+AGG 0.600926 2.1:+6361033 None:intergenic
CCCTTTAACCACGTTAGCGT+AGG 0.602141 2.1:+6362717 None:intergenic
AAAGAAGAGATTCAGAAGCA+AGG 0.613101 2.1:-6362511 MS.gene45538:CDS
AGACATTTGATGAGTTAACT+CGG 0.619910 2.1:+6363057 None:intergenic
TTCAGAAGCAAGGTAATGGA+GGG 0.622585 2.1:-6362501 MS.gene45538:CDS
TGATTCTGATGGAGCAACAA+CGG 0.623497 2.1:+6362342 None:intergenic
GGCCTTGTTAGATGAGGACG+AGG 0.624372 2.1:+6362466 None:intergenic
CCTGCTCCATTGCAGACCAG+TGG 0.625104 2.1:-6362445 MS.gene45538:CDS
CACCGGTGAGTTGTAACCAA+GGG 0.632229 2.1:-6362801 MS.gene45538:CDS
GCAACAACGGTTCCAGCACG+AGG 0.632333 2.1:+6362355 None:intergenic
ATCCTCGTCTGTTGGAACCA+TGG 0.632769 2.1:+6363087 None:intergenic
TTCGGAATTGTGACTCTGGG+AGG 0.633765 2.1:+6362982 None:intergenic
CACCATGGTTCCAACAGACG+AGG 0.639127 2.1:-6363089 MS.gene45538:CDS
TTCCAACAAGGTGTAGCTGG+CGG 0.645177 2.1:+6362748 None:intergenic
GGAGCAGGCCTTGTTAGATG+AGG 0.651849 2.1:+6362460 None:intergenic
GTCCTCGTCCTCATCTAACA+AGG 0.653193 2.1:-6362468 MS.gene45538:CDS
TTAAGAATGGTACCACGGAG+TGG 0.655116 2.1:+6361030 None:intergenic
GTAACCAAGGGAGCTCAGAA+GGG 0.662619 2.1:-6362789 MS.gene45538:CDS
TCTTGCTGGTATAAGGACAG+TGG 0.678497 2.1:+6361113 None:intergenic
GTTGGCGTCCCTCCACTCCG+TGG 0.686225 2.1:-6361042 MS.gene45538:intron
TGCTAACTGAGAGAACATCA+TGG 0.694654 2.1:+6363122 None:intergenic
TCACCGGTGAGTTGTAACCA+AGG 0.715334 2.1:-6362802 MS.gene45538:CDS
GTTCACCGGATTCAACTCTG+TGG 0.734801 2.1:-6362825 MS.gene45538:CDS
TAGCAACAACAATCACACCA+TGG 0.741419 2.1:-6363104 MS.gene45538:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTAATTTAAAT+CGG + chr2.1:6361616-6361635 None:intergenic 0.0%
!! ATATGCATATAAAATTTATT+TGG - chr2.1:6361721-6361740 MS.gene45538:intron 10.0%
!! TAACAATAATAAATTAAGAA+TGG + chr2.1:6361321-6361340 None:intergenic 10.0%
!! TATGCATATAAAATTTATTT+GGG - chr2.1:6361722-6361741 MS.gene45538:intron 10.0%
!!! AATTTTATATGCATATAAAA+TGG + chr2.1:6361717-6361736 None:intergenic 10.0%
!!! ATATTTGATGTTTTTAAAAT+TGG + chr2.1:6360494-6360513 None:intergenic 10.0%
!!! ATTTTATATGCATATAAAAT+GGG + chr2.1:6361735-6361716 None:intergenic 10.0%
!!! CAATTTTAATAGATTTAAAA+TGG - chr2.1:6360435-6360454 MS.gene45538:intron 10.0%
!!! CTTTCTTTTTAAAATTATTT+GGG - chr2.1:6361812-6361831 MS.gene45538:intron 10.0%
!!! TAATTTTAAAGATATTTACA+TGG - chr2.1:6360218-6360237 MS.gene45538:intron 10.0%
!!! TTTTTTTTTTTTTTTAAGGA+AGG + chr2.1:6360844-6360863 None:intergenic 10.0%
!! AAATTAAACAAATGTAGAAA+GGG + chr2.1:6362551-6362570 None:intergenic 15.0%
!! CAGTTAAGTATAATTAATTA+AGG + chr2.1:6361112-6361131 None:intergenic 15.0%
!! GGTAAGATTATTTATTTATT+AGG + chr2.1:6361418-6361437 None:intergenic 15.0%
!! TAAATTAAACAAATGTAGAA+AGG + chr2.1:6362552-6362571 None:intergenic 15.0%
!!! AAATTAAGAGTATAAAACTT+AGG + chr2.1:6361843-6361862 None:intergenic 15.0%
!!! AACAATGTTAAATCTTTTTA+AGG - chr2.1:6361520-6361539 MS.gene45538:intron 15.0%
!!! ACTTAAGAGTATTTTATTTT+TGG + chr2.1:6361874-6361893 None:intergenic 15.0%
!!! CCAAATAATTTTAAAAAGAA+AGG + chr2.1:6361814-6361833 None:intergenic 15.0%
!!! CCTTTCTTTTTAAAATTATT+TGG - chr2.1:6361811-6361830 MS.gene45538:intron 15.0%
!!! TATACTTTCTTTAGAAAAAT+TGG - chr2.1:6362685-6362704 MS.gene45538:CDS 15.0%
!! AAATTAAAGCCATTGAATTA+AGG - chr2.1:6359768-6359787 MS.gene45538:intron 20.0%
!! GATTGATAAGAAAATGAAAT+AGG + chr2.1:6361936-6361955 None:intergenic 20.0%
!! TGATGAAAATCTATCAATAT+TGG + chr2.1:6359726-6359745 None:intergenic 20.0%
!! TTATATATATTGTTAGGGAA+AGG - chr2.1:6361194-6361213 MS.gene45538:intron 20.0%
!! TTTCTACATGAAAAATTCTA+TGG - chr2.1:6361974-6361993 MS.gene45538:intron 20.0%
!!! ATGTTTTTTCCTTAATTCAA+TGG + chr2.1:6359780-6359799 None:intergenic 20.0%
!!! TGATTTGCAATTCTTAATAA+TGG - chr2.1:6362807-6362826 MS.gene45538:CDS 20.0%
!!! TTCAATATTTTAGAACTAGT+TGG + chr2.1:6362921-6362940 None:intergenic 20.0%
!!! TTTGATGTTTTTAAAATTGG+AGG + chr2.1:6360491-6360510 None:intergenic 20.0%
! AAAAATAAAACAGAACCGAA+AGG + chr2.1:6361007-6361026 None:intergenic 25.0%
! AACTAGATTGATGCTATTAA+GGG - chr2.1:6360612-6360631 MS.gene45538:intron 25.0%
! ACAGATTCGAATATTAAAAG+TGG + chr2.1:6360121-6360140 None:intergenic 25.0%
! AGGATAGTCATTTAAATTGA+TGG + chr2.1:6361794-6361813 None:intergenic 25.0%
! ATAAATTAAGAATGGTACCA+CGG + chr2.1:6361313-6361332 None:intergenic 25.0%
! ATCTTACCCAACAAAATATT+TGG - chr2.1:6361430-6361449 MS.gene45538:intron 25.0%
! CACACAAGAGTTAATAATAT+AGG + chr2.1:6359450-6359469 None:intergenic 25.0%
! CAGATTCGAATATTAAAAGT+GGG + chr2.1:6360120-6360139 None:intergenic 25.0%
! GCACGTTATATATATTGTTA+GGG - chr2.1:6361189-6361208 MS.gene45538:intron 25.0%
! GTTATTCAATAAACCTGAAA+AGG + chr2.1:6359415-6359434 None:intergenic 25.0%
! TAACTAGATTGATGCTATTA+AGG - chr2.1:6360611-6360630 MS.gene45538:intron 25.0%
! TGAAAATCTATCAATATTGG+AGG + chr2.1:6359723-6359742 None:intergenic 25.0%
! TGCACGTTATATATATTGTT+AGG - chr2.1:6361188-6361207 MS.gene45538:intron 25.0%
!! ATCTCATCCAAATATTTTGT+TGG + chr2.1:6361440-6361459 None:intergenic 25.0%
!! TACAGGTACTATTTTATTGT+CGG + chr2.1:6362389-6362408 None:intergenic 25.0%
!! TCTCATCCAAATATTTTGTT+GGG + chr2.1:6361439-6361458 None:intergenic 25.0%
!!! CGAATTTGATAGTATTGTTT+TGG + chr2.1:6361135-6361154 None:intergenic 25.0%
AAGCTTGTAGAGTTACAAAT+GGG + chr2.1:6360465-6360484 None:intergenic 30.0%
AATCAAGCAGTTAGAAAGTT+TGG - chr2.1:6361049-6361068 MS.gene45538:CDS 30.0%
ACTAACATCTCGAATAGATT+AGG + chr2.1:6361568-6361587 None:intergenic 30.0%
AGACATTTGATGAGTTAACT+CGG + chr2.1:6359281-6359300 None:intergenic 30.0%
ATGTTTATGTGACAACTTAG+TGG + chr2.1:6360734-6360753 None:intergenic 30.0%
CAAACAGATGAGAAATTGAT+AGG + chr2.1:6362590-6362609 None:intergenic 30.0%
CAACCACCATAAAGAATATT+TGG + chr2.1:6360924-6360943 None:intergenic 30.0%
CAGCATGTTACTATAGATTA+AGG + chr2.1:6360959-6360978 None:intergenic 30.0%
CCAAGTTAACTAAAAGTCTT+AGG - chr2.1:6361474-6361493 MS.gene45538:intron 30.0%
CGAATAGATTAGGATTACAA+TGG + chr2.1:6361558-6361577 None:intergenic 30.0%
CTTAGAAAGTAGAAAAAGAG+TGG + chr2.1:6360168-6360187 None:intergenic 30.0%
GAAGATTCGTTAATGTTTGA+AGG - chr2.1:6361083-6361102 MS.gene45538:CDS 30.0%
GATGACATGACATATTTAGA+TGG + chr2.1:6360712-6360731 None:intergenic 30.0%
GCAGTCTCGAAAAATAAAAT+TGG + chr2.1:6362847-6362866 None:intergenic 30.0%
GTTTGTGCAATTATTCGTAT+AGG - chr2.1:6361586-6361605 MS.gene45538:intron 30.0%
TAAGCTTGTAGAGTTACAAA+TGG + chr2.1:6360466-6360485 None:intergenic 30.0%
TAGATAGTAAGGGAAACATA+TGG + chr2.1:6359385-6359404 None:intergenic 30.0%
TATTGAATGTCATGTTGCTA+AGG + chr2.1:6361670-6361689 None:intergenic 30.0%
TCAGAATCAACCAAAAAGAA+AGG - chr2.1:6360007-6360026 MS.gene45538:intron 30.0%
TCTTAAGTGTTACACTTTGT+GGG + chr2.1:6362181-6362200 None:intergenic 30.0%
TGACCAAATATTCTTTATGG+TGG - chr2.1:6360918-6360937 MS.gene45538:intron 30.0%
TGGTGACCAAATATTCTTTA+TGG - chr2.1:6360915-6360934 MS.gene45538:intron 30.0%
TTAGGAGAGTAGTAACTAAA+CGG + chr2.1:6361400-6361419 None:intergenic 30.0%
! AAACTTAGAGCGTTAAACTT+AGG + chr2.1:6361753-6361772 None:intergenic 30.0%
! AAATCAAAGTTGTTGCTTGA+TGG + chr2.1:6361350-6361369 None:intergenic 30.0%
! AGTCATGAGAATGACTATTT+TGG - chr2.1:6362000-6362019 MS.gene45538:intron 30.0%
! GATGAATTGATGATACTATG+AGG + chr2.1:6362101-6362120 None:intergenic 30.0%
! TAAGTTTAACGCTCTAAGTT+TGG - chr2.1:6361752-6361771 MS.gene45538:intron 30.0%
! TGTTCATGTTTTTCACTAGT+CGG - chr2.1:6360056-6360075 MS.gene45538:intron 30.0%
!! AGTTGATGATTTGTTCCTTT+CGG - chr2.1:6360989-6361008 MS.gene45538:intron 30.0%
!! CCTAAGACTTTTAGTTAACT+TGG + chr2.1:6361477-6361496 None:intergenic 30.0%
!!! AGATCTTGTTTTGAACCATA+GGG - chr2.1:6363053-6363072 MS.gene45538:CDS 30.0%
!!! TTCTTTTTGGTTGATTCTGA+TGG + chr2.1:6360007-6360026 None:intergenic 30.0%
AAAGAAGAGATTCAGAAGCA+AGG - chr2.1:6359824-6359843 MS.gene45538:intron 35.0%
AACCAAAAAGAAAGGTAACG+TGG - chr2.1:6360015-6360034 MS.gene45538:intron 35.0%
AGGATGAAGCAACAAATTCA+TGG + chr2.1:6361650-6361669 None:intergenic 35.0%
AGTACAAAGGCAAGATAGAT+AGG + chr2.1:6360870-6360889 None:intergenic 35.0%
ATATGATTCTGCCTCAAGAA+TGG - chr2.1:6363136-6363155 MS.gene45538:CDS 35.0%
ATCCACCTATATGCTATTGA+GGG - chr2.1:6360517-6360536 MS.gene45538:intron 35.0%
ATGTCATTGTACAAACAGTG+AGG + chr2.1:6362066-6362085 None:intergenic 35.0%
CTTAAGTGTTACACTTTGTG+GGG + chr2.1:6362180-6362199 None:intergenic 35.0%
GCAACTACACTTTGACAAAA+CGG - chr2.1:6361259-6361278 MS.gene45538:intron 35.0%
GTCTTAAGTGTTACACTTTG+TGG + chr2.1:6362182-6362201 None:intergenic 35.0%
GTGGGATTTAATTAGTTCAC+CGG - chr2.1:6359496-6359515 MS.gene45538:intron 35.0%
TAGTAATGCTTGCAACATCT+TGG + chr2.1:6362415-6362434 None:intergenic 35.0%
TATCCACCTATATGCTATTG+AGG - chr2.1:6360516-6360535 MS.gene45538:intron 35.0%
TCACATGCAAACTAGTACAA+AGG + chr2.1:6360883-6360902 None:intergenic 35.0%
TCTTACGATATAAGCTCATG+AGG - chr2.1:6360653-6360672 MS.gene45538:intron 35.0%
TGATAGGTGAAATCCTAAAG+TGG - chr2.1:6360556-6360575 MS.gene45538:intron 35.0%
TGTTACGCTTATAACAAGGT+AGG + chr2.1:6362157-6362176 None:intergenic 35.0%
TTACATCAAGCAGCAAAATG+AGG - chr2.1:6359799-6359818 MS.gene45538:intron 35.0%
TTAGGATTTCACCTATCACA+TGG + chr2.1:6360554-6360573 None:intergenic 35.0%
! ATCCACGTTACCTTTCTTTT+TGG + chr2.1:6360020-6360039 None:intergenic 35.0%
! GCTAGTTGATACTGAGTATT+CGG + chr2.1:6362889-6362908 None:intergenic 35.0%
! TAGGTTTTTGTCTTCCAACA+AGG + chr2.1:6359602-6359621 None:intergenic 35.0%
! TGTACTAGTTTGCATGTGAT+CGG - chr2.1:6360884-6360903 MS.gene45538:intron 35.0%
! TGTTTTCACTTGAGAATCAC+CGG - chr2.1:6363082-6363101 MS.gene45538:CDS 35.0%
! TGTTTTTCACTAGTCGGTAA+TGG - chr2.1:6360062-6360081 MS.gene45538:intron 35.0%
!! ATCAATCTAGTTGCCACTTT+AGG + chr2.1:6360572-6360591 None:intergenic 35.0%
!! ATCACACAAAGCATTGATTG+AGG - chr2.1:6359742-6359761 MS.gene45538:intron 35.0%
!!! CAGATCTTGTTTTGAACCAT+AGG - chr2.1:6363052-6363071 MS.gene45538:CDS 35.0%
!!! TGCTTTTTCTACCATGTGAT+AGG - chr2.1:6360540-6360559 MS.gene45538:intron 35.0%
AAGCACCCTCAATAGCATAT+AGG + chr2.1:6360525-6360544 None:intergenic 40.0%
AATCCCACGACTACATGAAA+AGG + chr2.1:6359484-6359503 None:intergenic 40.0%
ATACTGAGTATTCGGACTGT+TGG + chr2.1:6362881-6362900 None:intergenic 40.0%
CTAGCTAGATAGGCTAAATG+TGG + chr2.1:6360819-6360838 None:intergenic 40.0%
GAGATTCAGAAGCAAGGTAA+TGG - chr2.1:6359830-6359849 MS.gene45538:intron 40.0%
GAGGCAGAATCATATCATTC+TGG + chr2.1:6363131-6363150 None:intergenic 40.0%
GCGACTTCTAAACAGAATCA+TGG - chr2.1:6359674-6359693 MS.gene45538:intron 40.0%
GGAAACATATGGTACCAGTT+CGG + chr2.1:6359374-6359393 None:intergenic 40.0%
GGCTAAATGTGGATGATTAG+TGG + chr2.1:6360808-6360827 None:intergenic 40.0%
GTGAAAACATACCTTCCCTA+TGG + chr2.1:6363071-6363090 None:intergenic 40.0%
TAGCAACAACAATCACACCA+TGG - chr2.1:6359231-6359250 MS.gene45538:CDS 40.0%
TGATTCTGATGGAGCAACAA+CGG + chr2.1:6359996-6360015 None:intergenic 40.0%
TGCTAACTGAGAGAACATCA+TGG + chr2.1:6359216-6359235 None:intergenic 40.0%
TTGCAACATCTTGGACTTAC+AGG + chr2.1:6362406-6362425 None:intergenic 40.0%
! ATTCAGAAGCAAGGTAATGG+AGG - chr2.1:6359833-6359852 MS.gene45538:intron 40.0%
! CTTCCTTTTCATGTAGTCGT+GGG - chr2.1:6359478-6359497 MS.gene45538:intron 40.0%
! TCTTCCTTTTCATGTAGTCG+TGG - chr2.1:6359477-6359496 MS.gene45538:intron 40.0%
! TTTCACTAGTCGGTAATGGT+TGG - chr2.1:6360066-6360085 MS.gene45538:intron 40.0%
!! TTCAGAAGCAAGGTAATGGA+GGG - chr2.1:6359834-6359853 MS.gene45538:intron 40.0%
!!! CTTGTTTTGAACCATAGGGA+AGG - chr2.1:6363057-6363076 MS.gene45538:CDS 40.0%
AAAACGGCTCCCAAAGTTGT+TGG - chr2.1:6361275-6361294 MS.gene45538:intron 45.0%
AAGGAAGGAGCTAGCTAGAT+AGG + chr2.1:6360829-6360848 None:intergenic 45.0%
ACCTACGCTAACGTGGTTAA+AGG - chr2.1:6359617-6359636 MS.gene45538:intron 45.0%
CACCCTCAATAGCATATAGG+TGG + chr2.1:6360522-6360541 None:intergenic 45.0%
CAGTTCGGAATTGTGACTCT+GGG + chr2.1:6359359-6359378 None:intergenic 45.0%
CCTACGCTAACGTGGTTAAA+GGG - chr2.1:6359618-6359637 MS.gene45538:intron 45.0%
CTACGCTAACGTGGTTAAAG+GGG - chr2.1:6359619-6359638 MS.gene45538:intron 45.0%
GACAAAAACCTACGCTAACG+TGG - chr2.1:6359610-6359629 MS.gene45538:intron 45.0%
GCACAACTCTTGCTGGTATA+AGG + chr2.1:6361232-6361251 None:intergenic 45.0%
GTGATGAAATCCTCGTCTGT+TGG + chr2.1:6359259-6359278 None:intergenic 45.0%
TATACCAGCAAGAGTTGTGC+AGG - chr2.1:6361232-6361251 MS.gene45538:intron 45.0%
TCTTGCTGGTATAAGGACAG+TGG + chr2.1:6361225-6361244 None:intergenic 45.0%
TTAAGAATGGTACCACGGAG+TGG + chr2.1:6361308-6361327 None:intergenic 45.0%
! AAGGAAGCGCGTAGATAGTA+AGG + chr2.1:6359396-6359415 None:intergenic 45.0%
! AGGAAGCGCGTAGATAGTAA+GGG + chr2.1:6359395-6359414 None:intergenic 45.0%
! CTAGTTTGCATGTGATCGGA+TGG - chr2.1:6360888-6360907 MS.gene45538:intron 45.0%
! GGGGTGTTACGCTTATAACA+AGG + chr2.1:6362161-6362180 None:intergenic 45.0%
! TAGTCGGTAATGGTTGGTTG+CGG - chr2.1:6360072-6360091 MS.gene45538:intron 45.0%
! TATCTACGCGCTTCCTTTTC+AGG - chr2.1:6359399-6359418 MS.gene45538:intron 45.0%
! TGGTTGGTTGCGGAATCAAA+TGG - chr2.1:6360082-6360101 MS.gene45538:intron 45.0%
!!! ATGATGCAGGCCGTTTTTCT+TGG - chr2.1:6359920-6359939 MS.gene45538:intron 45.0%
!!! CTGTTGCTGCTTTTGTTGAC+CGG + chr2.1:6363104-6363123 None:intergenic 45.0%
!! ATAAAAAAAAAATACATTTA+AGG + chr2.1:6360379-6360398 None:intergenic 5.0%
!!! ATATCTTTAAAATTATTTAT+TGG + chr2.1:6360213-6360232 None:intergenic 5.0%
!!! GTTTTTTTTTTTTTTTTTTA+AGG + chr2.1:6360848-6360867 None:intergenic 5.0%
!!! TATCTTTAAAATTATTTATT+GGG + chr2.1:6360212-6360231 None:intergenic 5.0%
!!! TTTTTTTTTTAATTTAAATC+GGG + chr2.1:6361615-6361634 None:intergenic 5.0%
AAAGCCTGCACAACTCTTGC+TGG + chr2.1:6361239-6361258 None:intergenic 50.0%
ACCGGACCCACCAAGAAAAA+CGG + chr2.1:6359933-6359952 None:intergenic 50.0%
ACCTGTCCCACTTCTTGAAC+CGG + chr2.1:6359951-6359970 None:intergenic 50.0%
ATCCTCGTCTGTTGGAACCA+TGG + chr2.1:6359251-6359270 None:intergenic 50.0%
CACCGGTGAGTTGTAACCAA+GGG - chr2.1:6359534-6359553 MS.gene45538:intron 50.0%
CCAGAGTCACAATTCCGAAC+TGG - chr2.1:6359357-6359376 MS.gene45538:intron 50.0%
CCAGTTCGGAATTGTGACTC+TGG + chr2.1:6359360-6359379 None:intergenic 50.0%
CCCTTTAACCACGTTAGCGT+AGG + chr2.1:6359621-6359640 None:intergenic 50.0%
CTCCCTTGGTTACAACTCAC+CGG + chr2.1:6359539-6359558 None:intergenic 50.0%
GGATTCAACTCTGTGGTCAC+CGG - chr2.1:6359517-6359536 MS.gene45538:intron 50.0%
GGTGACCACAGAGTTGAATC+CGG + chr2.1:6359518-6359537 None:intergenic 50.0%
GTAACCAAGGGAGCTCAGAA+GGG - chr2.1:6359546-6359565 MS.gene45538:intron 50.0%
GTCCTCGTCCTCATCTAACA+AGG - chr2.1:6359867-6359886 MS.gene45538:intron 50.0%
GTCTTCCAACAAGGTGTAGC+TGG + chr2.1:6359593-6359612 None:intergenic 50.0%
GTTCACCGGATTCAACTCTG+TGG - chr2.1:6359510-6359529 MS.gene45538:intron 50.0%
TCACCGGTGAGTTGTAACCA+AGG - chr2.1:6359533-6359552 MS.gene45538:intron 50.0%
TGTAACCAAGGGAGCTCAGA+AGG - chr2.1:6359545-6359564 MS.gene45538:intron 50.0%
TTCCAACAAGGTGTAGCTGG+CGG + chr2.1:6359590-6359609 None:intergenic 50.0%
TTCGGAATTGTGACTCTGGG+AGG + chr2.1:6359356-6359375 None:intergenic 50.0%
!!! ATGCAGGCCGTTTTTCTTGG+TGG - chr2.1:6359923-6359942 MS.gene45538:intron 50.0%
!!! TGCAGGCCGTTTTTCTTGGT+GGG - chr2.1:6359924-6359943 MS.gene45538:intron 50.0%
AGAATGGTACCACGGAGTGG+AGG + chr2.1:6361305-6361324 None:intergenic 55.0%
ATGACCCTTCTGAGCTCCCT+TGG + chr2.1:6359553-6359572 None:intergenic 55.0%
CACCATGGTTCCAACAGACG+AGG - chr2.1:6359246-6359265 MS.gene45538:CDS 55.0%
CTGCATCATTCCTCCACCAC+TGG + chr2.1:6359909-6359928 None:intergenic 55.0%
GAATGGTACCACGGAGTGGA+GGG + chr2.1:6361304-6361323 None:intergenic 55.0%
GCATGTGATCGGATGGTGAG+TGG - chr2.1:6360895-6360914 MS.gene45538:intron 55.0%
GGAGGGACGCCAACAACTTT+GGG + chr2.1:6361287-6361306 None:intergenic 55.0%
GTGGGTCCGGTTCAAGAAGT+GGG - chr2.1:6359942-6359961 MS.gene45538:intron 55.0%
TCCGGTTCAAGAAGTGGGAC+AGG - chr2.1:6359947-6359966 MS.gene45538:intron 55.0%
TGGAGGGACGCCAACAACTT+TGG + chr2.1:6361288-6361307 None:intergenic 55.0%
! CAGTGGTGGAGGAATGATGC+AGG - chr2.1:6359907-6359926 MS.gene45538:intron 55.0%
! GGTGTTTTCTTGCCTCGTGC+TGG - chr2.1:6359968-6359987 MS.gene45538:intron 55.0%
!! GGAGCAGGCCTTGTTAGATG+AGG + chr2.1:6359878-6359897 None:intergenic 55.0%
!! GGCCTTGTTAGATGAGGACG+AGG + chr2.1:6359872-6359891 None:intergenic 55.0%
!!! GCCGTTTTTCTTGGTGGGTC+CGG - chr2.1:6359929-6359948 MS.gene45538:intron 55.0%
CCATTGCAGACCAGTGGTGG+AGG - chr2.1:6359896-6359915 MS.gene45538:intron 60.0%
CCTGCTCCATTGCAGACCAG+TGG - chr2.1:6359890-6359909 MS.gene45538:intron 60.0%
CTCCGCCAGCTACACCTTGT+TGG - chr2.1:6359585-6359604 MS.gene45538:intron 60.0%
GCAACAACGGTTCCAGCACG+AGG + chr2.1:6359983-6360002 None:intergenic 60.0%
GCTCCATTGCAGACCAGTGG+TGG - chr2.1:6359893-6359912 MS.gene45538:intron 60.0%
GGTGGGTCCGGTTCAAGAAG+TGG - chr2.1:6359941-6359960 MS.gene45538:intron 60.0%
! CCACTGGTCTGCAATGGAGC+AGG + chr2.1:6359893-6359912 None:intergenic 60.0%
! CCTCCACCACTGGTCTGCAA+TGG + chr2.1:6359899-6359918 None:intergenic 60.0%
GTTGGCGTCCCTCCACTCCG+TGG - chr2.1:6361293-6361312 MS.gene45538:intron 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6359190 6363167 6359190 ID=MS.gene45538
chr2.1 mRNA 6359190 6363167 6359190 ID=MS.gene45538.t1;Parent=MS.gene45538
chr2.1 exon 6362979 6363167 6362979 ID=MS.gene45538.t1.exon1;Parent=MS.gene45538.t1
chr2.1 CDS 6362979 6363167 6362979 ID=cds.MS.gene45538.t1;Parent=MS.gene45538.t1
chr2.1 exon 6362647 6362863 6362647 ID=MS.gene45538.t1.exon2;Parent=MS.gene45538.t1
chr2.1 CDS 6362647 6362863 6362647 ID=cds.MS.gene45538.t1;Parent=MS.gene45538.t1
chr2.1 exon 6362329 6362604 6362329 ID=MS.gene45538.t1.exon3;Parent=MS.gene45538.t1
chr2.1 CDS 6362329 6362604 6362329 ID=cds.MS.gene45538.t1;Parent=MS.gene45538.t1
chr2.1 exon 6361043 6361147 6361043 ID=MS.gene45538.t1.exon4;Parent=MS.gene45538.t1
chr2.1 CDS 6361043 6361147 6361043 ID=cds.MS.gene45538.t1;Parent=MS.gene45538.t1
chr2.1 exon 6359190 6359302 6359190 ID=MS.gene45538.t1.exon5;Parent=MS.gene45538.t1
chr2.1 CDS 6359190 6359302 6359190 ID=cds.MS.gene45538.t1;Parent=MS.gene45538.t1
Gene Sequence

>MS.gene45538

ATGGCTGATGACAATAATATGTACCATGATGTTCTCTCAGTTAGCAACAACAATCACACCATGGTTCCAACAGACGAGGATTTCATCACCGAGTTAACTCATCAAATGTCTCAATTCATGCTTCAAGAAGATATTGACGACTCATTCGATTTCTCATCTATTGCCTCCCAGAGTCACAATTCCGAACTGGTACCATATGTTTCCCTTACTATCTACGCGCTTCCTTTTCAGGTTTATTGAATAACTGATGTATCTGACCTATATTATTAACTCTTGTGTGTTTTCTTTCTTCCTTTTCATGTAGTCGTGGGATTTAATTAGTTCACCGGATTCAACTCTGTGGTCACCGGTGAGTTGTAACCAAGGGAGCTCAGAAGGGTCATCACAGAACTCATCTCCGCCAGCTACACCTTGTTGGAAGACAAAAACCTACGCTAACGTGGTTAAAGGGGTTGAGAAAAATACTAAGAAGCTTAAAGAAACAGCGACTTCTAAACAGAATCATGGTTCTGATATTCAAAGTTTCAAGTCCTCCAATATTGATAGATTTTCATCACACAAAGCATTGATTGAGGAACAAATTAAAGCCATTGAATTAAGGAAAAAACATTACATCAAGCAGCAAAATGAGGCTAAAGAAGAGATTCAGAAGCAAGGTAATGGAGGGAACTGTACTCGTCCTCGTCCTCATCTAACAAGGCCTGCTCCATTGCAGACCAGTGGTGGAGGAATGATGCAGGCCGTTTTTCTTGGTGGGTCCGGTTCAAGAAGTGGGACAGGTGTTTTCTTGCCTCGTGCTGGAACCGTTGTTGCTCCATCAGAATCAACCAAAAAGAAAGGTAACGTGGATTATGTTATATCTATTCTGTTCATGTTTTTCACTAGTCGGTAATGGTTGGTTGCGGAATCAAATGGAATGTCTAGTTTCCCACTTTTAATATTCGAATCTGTTTATGATATTTTGTCTCTAAAATTCCACTCTTTTTCTACTTTCTAAGATTTCTTCTTGTTTGTTTCAACCCAATAAATAATTTTAAAGATATTTACATGGTTTTTAGTTAAGATTTATGAGCAATCAATCATTTCATTTTAAATGTGTGTGATGTGCTGTTATTATAATCTTCAAGTGTCTTCTTTATTAGTTATTGTGATCACTAAATATGCTTCTTGTGTAATTTAACTTAATCCTTAAATGTATTTTTTTTTTATCAAGTTAGTTCAAAAGAAACACTAGAAATATGTTTGCAATTTTAATAGATTTAAAATGGATCTCCCATTTGTAACTCTACAAGCTTAGTCCTCCAATTTTAAAAACATCAAATATTTTATCCACCTATATGCTATTGAGGGTGCTTTTTCTACCATGTGATAGGTGAAATCCTAAAGTGGCAACTAGATTGATGAGATGAAAATGAGTTATCTAACTAGATTGATGCTATTAAGGGTGCATTAAATGTAGTAACTCTTACGATATAAGCTCATGAGGACATAGAAAATGAAAGCTAATTCAAGTGATAATCCATCTAAATATGTCATGTCATCCACTAAGTTGTCACATAAACATGTAGATTTTTTTTAAAAAAAAAATATTCTTAATATTACGCTTCATTAATCTCCACTAATCATCCACATTTAGCCTATCTAGCTAGCTCCTTCCTTAAAAAAAAAAAAAAAAAACCTATCTATCTTGCCTTTGTACTAGTTTGCATGTGATCGGATGGTGAGTGGTGACCAAATATTCTTTATGGTGGTTGAACTTGATTTTTCCTTAATCTATAGTAACATGCTGCTGACATTTGAGTTGATGATTTGTTCCTTTCGGTTCTGTTTTATTTTTCATTTAGCAAGAAACATCAAAAAATCAAGCAGTTAGAAAGTTTGGTGAGCAAAATTGAAGATTCGTTAATGTTTGAAGGAATCCTTAATTAATTATACTTAACTGCCAAAACAATACTATCAAATTCGTTTCACATCTTACATCAAAATTGATTTGTTTTATGCACGTTATATATATTGTTAGGGAAAGGTTGCTCCACTGTCCTTATACCAGCAAGAGTTGTGCAGGCTTTGCAACTACACTTTGACAAAACGGCTCCCAAAGTTGTTGGCGTCCCTCCACTCCGTGGTACCATTCTTAATTTATTATTGTTAATTATACCATCAAGCAACAACTTTGATTTGTTGTTTATTTATTGCTATTCTTCATGCCGTTTAGTTACTACTCTCCTAATAAATAAATAATCTTACCCAACAAAATATTTGGATGAGATGATAAGAATCTCTTCCAAGTTAACTAAAAGTCTTAGGTTCGAATCAAACTCTAAAAATACAACAATGTTAAATCTTTTTAAGGAGAATTTTTTTACCATTGTAATCCTAATCTATTCGAGATGTTAGTTTGTGCAATTATTCGTATAGGACACCCGATTTAAATTAAAAAAAAAAAAAAACTCATGACCATGAATTTGTTGCTTCATCCTTAGCAACATGACATTCAATAAACTTTTAGTTGTTATATCAATTCCCATTTTATATGCATATAAAATTTATTTGGGTAATTCCTAAGTTTAACGCTCTAAGTTTGGTTGTATTCAATGTAGTCCATCAATTTAAATGACTATCCTTTCTTTTTAAAATTATTTGGGCAATTCCTAAGTTTTATACTCTTAATTTTTGTAGCACCAAAAATAAAATACTCTTAAGTTTTGTAGAAAAAAAAAACTCTAAGTTTGCTACTGACTTTCCTATTTCATTTTCTTATCAATCATATAAATTTATAAACAATTTCTACATGAAAAATTCTATGGTGAAGTCATGAGAATGACTATTTTGGTGAATTTAACACTATAACATCAAAAATGTAATGAGTAACACCTCACTGTTTGTACAATGACATCAAAAGTTCAGTCCTCATAGTATCATCAATTCATCAGATTAACAAGATTACACTTAATCTAATTTTATCCTACCTTGTTATAAGCGTAACACCCCACAAAGTGTAACACTTAAGACTATCACATAATATCATCAACTCTACATCAAAAGTTCAGTCCTCATAGTATCATCAATTCATCAGATTAACAAGATTACACTTAATCTAATTTTATCCTACCTTGTTATAAGCGTAACACCCCACAAAGTGTAACACTTAAGACTATCACATAATATCATCAACTCTGCTTGCATGTTAAAGATTCCGACAATAAAATAGTACCTGTAAGTCCAAGATGTTGCAAGCATTACTAGATGAATTACTATTGATCATTAATCAGTAATCAACAATTTAAAAATGAATCAAACATTAAGAACAAAATTAACTTTTTCAAAAAGTCAGTTGTCTGACTGCACTATAGAAGCTCCCTTTCTACATTTGTTTAATTTATTCACTCTTTGATTTCCTATCAATTTCTCATCTGTTTGCTTACACTCAAGTCTTGCGCAATGTTAGATTGTATTAAATGTCACACTCACACACACATCATCTAGTTGTTTTTTTATACTTTCTTTAGAAAAATTGGCATACGTCATGTTTATAAAAAACAAAAATTATGAATAAATTAAAACTAGTATATTCTATGAAAGACTTCTAGTTAGTACTAATCTCTCTATGATTACTTTGATTTGCAATTCTTAATAATGGAATGTATTAGCTGTCCAATTTTATTTTTCGAGACTGCTGCAATTTATTCCAACAGTCCGAATACTCAGTATCAACTAGCAATTTGTCGCCAACTAGTTCTAAAATATTGAACTCGTAGTTATTGATTATATTCATAACACTGTCTAATTTGATTTTCATCTATTTATTTATTTATTTGTTGTTAATCAATTTGCTCTATAATATTGTTATTGTTATGAATTGCAGATCTTGTTTTGAACCATAGGGAAGGTATGTTTTCACTTGAGAATCACCGGTCAACAAAAGCAGCAACAGATGTCCAGAATGATATGATTCTGCCTCAAGAATGGACATATTGA
Protein sequence

>MS.gene45538.t1

MADDNNMYHDVLSVSNNNHTMVPTDEDFITELTHQMSQFMLQEDIDDSFDFSSIASQSHNSELSWDLISSPDSTLWSPVSCNQGSSEGSSQNSSPPATPCWKTKTYANVVKGVEKNTKKLKETATSKQNHGSDIQTLIEEQIKAIELRKKHYIKQQNEAKEEIQKQGNGGNCTRPRPHLTRPAPLQTSGGGMMQAVFLGGSGSRSGTGVFLPRAGTVVAPSESTKKKGKGCSTVLIPARVVQALQLHFDKTAPKVVGVPPLRDLVLNHREGMFSLENHRSTKAATDVQNDMILPQEWTY