AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45539

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45539.t1 MTR_2g097850 94.378 925 41 3 1 924 1 915 0.0 1748
MS.gene45539.t1 MTR_4g064997 50.742 944 377 18 1 924 1 876 0.0 732
MS.gene45539.t1 MTR_4g019900 35.934 423 230 10 511 924 537 927 1.47e-63 232
MS.gene45539.t1 MTR_7g065880 31.178 433 211 13 515 924 470 838 6.27e-50 190
MS.gene45539.t1 MTR_7g065880 31.627 332 165 8 515 825 470 760 4.58e-39 156
MS.gene45539.t1 MTR_5g010160 28.539 445 240 17 526 924 209 621 1.27e-17 88.2
MS.gene45539.t1 MTR_8g098260 37.447 235 111 11 711 924 1082 1301 6.64e-17 86.7
MS.gene45539.t1 MTR_1g073360 34.615 130 63 4 755 873 445 563 1.26e-16 84.7
MS.gene45539.t1 MTR_1g073360 34.615 130 63 4 755 873 480 598 1.34e-16 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45539.t1 AT5G59020 30.319 940 436 34 43 924 2 780 1.86e-87 296
MS.gene45539.t1 AT2G29510 39.671 426 191 12 516 924 463 839 9.18e-73 257
MS.gene45539.t1 AT2G29510 27.327 505 318 12 7 501 36 501 3.70e-27 119
MS.gene45539.t1 AT5G01030 33.985 409 181 13 522 924 419 744 1.95e-47 182
MS.gene45539.t1 AT5G01030 33.985 409 181 13 522 924 419 744 1.95e-47 182
MS.gene45539.t1 AT5G01030 33.985 409 181 13 522 924 419 744 1.95e-47 182
MS.gene45539.t1 AT2G37930 35.294 340 149 14 589 924 299 571 3.93e-38 151
MS.gene45539.t1 AT2G37930 35.294 340 149 14 589 924 299 571 3.93e-38 151
MS.gene45539.t1 AT2G37930 35.294 340 149 14 589 924 271 543 4.19e-38 150
MS.gene45539.t1 AT2G37930 39.269 219 89 9 589 803 299 477 4.58e-29 122
MS.gene45539.t1 AT1G04490 41.880 117 51 4 753 868 288 388 4.17e-20 94.4
MS.gene45539.t1 AT1G04490 41.880 117 51 4 753 868 288 388 4.17e-20 94.4
MS.gene45539.t1 AT1G04490 41.880 117 51 4 753 868 288 388 4.17e-20 94.4
MS.gene45539.t1 AT1G04490 41.880 117 51 4 753 868 288 388 4.17e-20 94.4
MS.gene45539.t1 AT1G04490 41.880 117 51 4 753 868 288 388 4.17e-20 94.4
MS.gene45539.t1 AT1G04490 41.880 117 51 4 753 868 288 388 4.17e-20 94.4
MS.gene45539.t1 AT1G04490 41.880 117 51 4 753 868 288 388 4.17e-20 94.4
MS.gene45539.t1 AT1G04490 41.880 117 51 4 753 868 288 388 4.17e-20 94.4
MS.gene45539.t1 AT1G63520 30.688 189 100 6 686 866 310 475 1.13e-17 87.8
MS.gene45539.t1 AT2G33360 39.655 116 60 4 755 868 323 430 2.08e-17 86.7
MS.gene45539.t1 AT2G33360 39.655 116 60 4 755 868 478 585 3.02e-17 87.0
MS.gene45539.t1 AT1G04490 63.830 47 16 1 753 799 288 333 1.00e-13 74.3
MS.gene45539.t1 AT4G11450 36.420 162 87 5 711 868 474 623 1.95e-12 71.6

Find 222 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCTGAAATAAATTTA+TGG 0.138393 2.1:+6348922 None:intergenic
GTTTCTCAGTAGTTACTTTC+TGG 0.157657 2.1:+6349365 None:intergenic
GAAAACTTTACCAGGTTATT+TGG 0.162566 2.1:-6350382 MS.gene45539:CDS
GGCTTCACAAATAAAGTTTC+TGG 0.172294 2.1:-6349301 MS.gene45539:CDS
TGTTGAGCTTCGGCTACTTC+TGG 0.183777 2.1:+6350263 None:intergenic
TCCAAGGTTGTTTGCATATC+AGG 0.215229 2.1:+6349703 None:intergenic
AATATACTCCAGGTTCAAAA+TGG 0.220776 2.1:+6347917 None:intergenic
GGATCAAGTAACCTCCTTAA+AGG 0.233429 2.1:+6348980 None:intergenic
TTTACATCCACATATTATTA+AGG 0.241348 2.1:-6349938 MS.gene45539:CDS
CAAATAATCTTGTTTGACTA+TGG 0.257790 2.1:+6349665 None:intergenic
GAGGCAGACAAATCTTTAAA+AGG 0.260461 2.1:-6350474 MS.gene45539:CDS
AAAGCAGGTCCAGCCCTTTA+AGG 0.262079 2.1:-6348994 MS.gene45539:CDS
TGATCAAATGGAAAAGAAAA+AGG 0.267133 2.1:-6349842 MS.gene45539:CDS
TGCCCACAGCAAATGTAAAA+AGG 0.279875 2.1:+6348708 None:intergenic
TATGTTGGTTCAAACATTTC+AGG 0.302476 2.1:-6349040 MS.gene45539:CDS
CGGAAAGGTGAAGAGCTTCT+TGG 0.312565 2.1:+6349343 None:intergenic
AAACTCCCTTACGAACTTTC+TGG 0.316083 2.1:-6347826 MS.gene45539:CDS
TTATGGCAGTTTGCTGCCTT+TGG 0.323720 2.1:+6349106 None:intergenic
AGATTTGTCTGCCTCGTCTT+TGG 0.325531 2.1:+6350482 None:intergenic
ATATACTAGTAGGATGGTTT+CGG 0.327833 2.1:+6349983 None:intergenic
TGAATGTTGGGGTCCTTGAT+TGG 0.329534 2.1:-6350329 MS.gene45539:CDS
TGATAGAGTCCACACGGTTC+TGG 0.329830 2.1:+6348471 None:intergenic
TATACTAGTAGGATGGTTTC+GGG 0.333075 2.1:+6349984 None:intergenic
AACTAGGTTGTGACTCTTGC+TGG 0.337889 2.1:+6349554 None:intergenic
ATTCTAGAAGGGGTCTAAAT+TGG 0.346390 2.1:-6350191 MS.gene45539:CDS
GTTGAGCTTCGGCTACTTCT+GGG 0.350508 2.1:+6350264 None:intergenic
CGGAGAAAGCTTTGAATGTT+GGG 0.350856 2.1:-6350341 MS.gene45539:CDS
AACATTTCAGGCAACAAATC+AGG 0.356426 2.1:-6349028 MS.gene45539:CDS
TTTGAAACTTTCGGCATCAA+TGG 0.361650 2.1:+6349531 None:intergenic
GGATAGGCAGCGTAACTTGC+AGG 0.364076 2.1:+6347712 None:intergenic
CGCCTGATTCTTTCCCTCGA+TGG 0.367460 2.1:+6347792 None:intergenic
GGAGTATATTCAGTAGCTTT+TGG 0.369009 2.1:-6347904 MS.gene45539:CDS
CTTATTGAGCGCTGGAAAAC+TGG 0.372139 2.1:-6348236 MS.gene45539:CDS
AAAGGCAAACAACTTGTAGA+AGG 0.380262 2.1:-6350437 MS.gene45539:CDS
ATCAGTGCAATCTCACTCTA+TGG 0.382134 2.1:-6350139 MS.gene45539:CDS
TCTGCACGTTTGATTATTGT+TGG 0.392375 2.1:+6348160 None:intergenic
ACTTATGTGGTAATTCTAGA+AGG 0.392524 2.1:-6350203 MS.gene45539:CDS
CTAGGTAATATAAGAACAAT+TGG 0.399469 2.1:+6349760 None:intergenic
TGATGGCAGTTTGCTGCCTT+AGG 0.400480 2.1:+6348947 None:intergenic
ATGACATGGCGAACGTAATC+AGG 0.402175 2.1:+6348539 None:intergenic
TGACTTTCTCTAAGTTCATC+TGG 0.412561 2.1:+6349580 None:intergenic
TGATTGCGGAGGTTGGGATT+TGG 0.414627 2.1:-6348204 MS.gene45539:CDS
AACTGCATTCACCTTGTCTT+GGG 0.415203 2.1:+6348642 None:intergenic
CTCCATCGAGGGAAAGAATC+AGG 0.416905 2.1:-6347794 MS.gene45539:CDS
ATGCGTATAACTGATAGCTT+TGG 0.419288 2.1:+6348346 None:intergenic
TATATAGCTGTCAGATCCTC+TGG 0.421401 2.1:-6350096 MS.gene45539:CDS
TTGGACAAGGACCAGAGGTT+TGG 0.422199 2.1:-6348830 MS.gene45539:CDS
AAGGGGCTGACCATTCTTCA+TGG 0.430882 2.1:+6348727 None:intergenic
AAAATTTAGACCCTTCCAAC+TGG 0.431439 2.1:+6347679 None:intergenic
ACAACCTTGGATCAGAAGTT+AGG 0.433180 2.1:-6349691 MS.gene45539:CDS
GCGATACCTCCATGGAGTTA+TGG 0.438420 2.1:+6349089 None:intergenic
GGTCCTTGATTGGACCAGTC+TGG 0.439964 2.1:-6350319 MS.gene45539:CDS
TGAATGTCAAGATCTATTAC+AGG 0.440514 2.1:-6348318 MS.gene45539:CDS
GAATCAGGCGGAATCTCTAT+TGG 0.444298 2.1:-6347779 MS.gene45539:CDS
CCACTTTCCTTAATAATATG+TGG 0.445996 2.1:+6349931 None:intergenic
GAGGAGATTCCTTGATCCAC+TGG 0.447216 2.1:-6349134 MS.gene45539:CDS
TCAGGTTTGAACCCATCAAC+AGG 0.452740 2.1:+6350546 None:intergenic
TATGTACAGGAGGGTTGATT+CGG 0.458737 2.1:+6349637 None:intergenic
GATCAAGTAACCTCCTTAAA+GGG 0.464365 2.1:+6348981 None:intergenic
GGTTCAAACAGGTGAACTAA+AGG 0.464778 2.1:-6347758 MS.gene45539:CDS
AGGATCTGACAGCTATATAA+TGG 0.464917 2.1:+6350100 None:intergenic
ATAGCAGCAAGCTCGTCATC+TGG 0.464983 2.1:+6348383 None:intergenic
ATCCACCATTGCAATGCAAA+TGG 0.465100 2.1:+6347852 None:intergenic
AACAGTGCGCTTCCTTTCCT+CGG 0.465138 2.1:+6349429 None:intergenic
CCGGAGAAAGCTTTGAATGT+TGG 0.465166 2.1:-6350342 MS.gene45539:CDS
CAACTGCATTCACCTTGTCT+TGG 0.465216 2.1:+6348641 None:intergenic
GAATCTCTATTGGTTCAAAC+AGG 0.465357 2.1:-6347769 MS.gene45539:CDS
TACTAGAAGATGTTGAGCTT+CGG 0.467189 2.1:+6350253 None:intergenic
CATTCCCATTCTGACGGGTA+CGG 0.468055 2.1:+6349474 None:intergenic
ATGAGTAGAAAACCTGTTGA+TGG 0.468639 2.1:-6350558 MS.gene45539:CDS
CCAACATTCAAAGCTTTCTC+CGG 0.470901 2.1:+6350342 None:intergenic
TATGTGTGGCTACGGAGCTC+TGG 0.472752 2.1:+6349251 None:intergenic
CTTTCGGCATCAATGGAACT+AGG 0.473479 2.1:+6349538 None:intergenic
GATCCTGTGATTGCGGAGGT+TGG 0.473723 2.1:-6348211 MS.gene45539:CDS
ATCCTGTGATTGCGGAGGTT+GGG 0.475937 2.1:-6348210 MS.gene45539:CDS
ACAAATAAGAGTGGTAGGTC+AGG 0.478768 2.1:-6348890 MS.gene45539:CDS
GTGAAGCTGCCTCGTAAGTC+CGG 0.479412 2.1:+6349893 None:intergenic
AGTGATAAACCTGGAAATGC+TGG 0.482598 2.1:-6349178 MS.gene45539:CDS
ACCCTTCCAACTGGAGAGAC+AGG 0.483381 2.1:+6347688 None:intergenic
CTCCTGTCTCTCCAGTTGGA+AGG 0.483766 2.1:-6347690 MS.gene45539:CDS
GAGCACGCAAGATGATCAAA+TGG 0.485322 2.1:-6349854 MS.gene45539:CDS
GCTGCCTTTGGTTTCACCAG+TGG 0.487185 2.1:+6349118 None:intergenic
CTCTGCAAATGCACCTCCTA+CGG 0.488282 2.1:-6349395 MS.gene45539:CDS
TTGGTTTCACCAGTGGATCA+AGG 0.488599 2.1:+6349125 None:intergenic
TCCTGTCTCTCCAGTTGGAA+GGG 0.491356 2.1:-6347689 MS.gene45539:CDS
AAGGAATCTCCTCAAAGGGC+TGG 0.495949 2.1:+6349144 None:intergenic
TATCCTCCTGTCTCTCCAGT+TGG 0.497408 2.1:-6347694 MS.gene45539:CDS
CTCCATTTGCATTGCAATGG+TGG 0.500869 2.1:-6347854 MS.gene45539:CDS
GGCACCCGTACCCGTCAGAA+TGG 0.502194 2.1:-6349479 MS.gene45539:CDS
GGCAGCTTCACATGCTAAGT+TGG 0.502580 2.1:-6349881 MS.gene45539:CDS
TTTCCAGGTTTATCACTGCC+TGG 0.503165 2.1:+6349184 None:intergenic
CTTGATCCAGAAAGTTCGTA+AGG 0.503613 2.1:+6347820 None:intergenic
GGCAACAAATCAGGTGCTGC+TGG 0.505394 2.1:-6349019 MS.gene45539:CDS
CTTCGTCGCTTATTGAGCGC+TGG 0.506867 2.1:-6348244 MS.gene45539:CDS
TAAAGTTTCTGGCTGTAAAG+AGG 0.506903 2.1:-6349290 MS.gene45539:CDS
CCGTCGACTTAGCTTCAGCA+TGG 0.509438 2.1:-6349323 MS.gene45539:CDS
AAAACAGGTCCAGCCCTTTG+AGG 0.509553 2.1:-6349153 MS.gene45539:CDS
GTTCAAACAGGTGAACTAAA+GGG 0.512189 2.1:-6347757 MS.gene45539:CDS
AGTGAGATTGCACTGATTGT+GGG 0.514414 2.1:+6350145 None:intergenic
CAACATTCAAAGCTTTCTCC+GGG 0.514623 2.1:+6350343 None:intergenic
GGGATTATCCTTTGACGAGA+AGG 0.515743 2.1:+6350165 None:intergenic
AAGTAACCTCCTTAAAGGGC+TGG 0.516427 2.1:+6348985 None:intergenic
GAACCTTTCAATATACTAGT+AGG 0.516909 2.1:+6349973 None:intergenic
ATATACTCCAGGTTCAAAAT+GGG 0.518411 2.1:+6347918 None:intergenic
CCACATATTATTAAGGAAAG+TGG 0.519204 2.1:-6349931 MS.gene45539:CDS
GCACCCGTACCCGTCAGAAT+GGG 0.519505 2.1:-6349478 MS.gene45539:CDS
GAAATAAATTTATGGAGTGA+TGG 0.519977 2.1:+6348930 None:intergenic
GCATTCACCTTGTCTTGGGA+CGG 0.522795 2.1:+6348646 None:intergenic
ATCCCAACCTCCGCAATCAC+AGG 0.524007 2.1:+6348208 None:intergenic
TCTCCCCTCTCCAAATAACC+TGG 0.524321 2.1:+6350372 None:intergenic
TTTACCAGGTTATTTGGAGA+GGG 0.524450 2.1:-6350376 MS.gene45539:CDS
ATTCCCATTCTGACGGGTAC+GGG 0.525477 2.1:+6349475 None:intergenic
AGATCCTCTGGAGAGAATGC+TGG 0.527741 2.1:-6350084 MS.gene45539:CDS
GATCAAGGAATCTCCTCAAA+GGG 0.529529 2.1:+6349140 None:intergenic
AAGTTCATCTGGCAGAGGAC+AGG 0.529947 2.1:+6349591 None:intergenic
GGGAAAGATGATCAATAGTC+CGG 0.530363 2.1:+6350004 None:intergenic
TCCTGATATGCAAACAACCT+TGG 0.531394 2.1:-6349704 MS.gene45539:CDS
GAGTCCATGCAGATCTAGAA+AGG 0.532150 2.1:-6349452 MS.gene45539:CDS
CTTATGTGGTAATTCTAGAA+GGG 0.535601 2.1:-6350202 MS.gene45539:CDS
CTGAGAATATCCATGAAGAA+TGG 0.536177 2.1:-6348737 MS.gene45539:CDS
TGGTTACAAATAAGAGTGGT+AGG 0.536577 2.1:-6348895 MS.gene45539:CDS
TGAGCTTCGGCTACTTCTGG+GGG 0.537355 2.1:+6350266 None:intergenic
CGTCGACTTAGCTTCAGCAT+GGG 0.537553 2.1:-6349322 MS.gene45539:CDS
TTCTGGTCTACTTCCGTAGG+AGG 0.541819 2.1:+6349382 None:intergenic
TGCGTATAACTGATAGCTTT+GGG 0.543220 2.1:+6348347 None:intergenic
AAAGCTACTGAATATACTCC+AGG 0.543507 2.1:+6347907 None:intergenic
ATTGCGATTCAGATATGTAC+AGG 0.545276 2.1:+6349624 None:intergenic
GCAAATGGAGAACGCTTGCA+AGG 0.545356 2.1:+6347867 None:intergenic
GTATATTGAAAGGTTCTGAC+AGG 0.547243 2.1:-6349966 MS.gene45539:CDS
TGATCCACTGCTGAAACCTA+AGG 0.547319 2.1:-6348963 MS.gene45539:CDS
AAGCACATGAAAACTTTACC+AGG 0.547766 2.1:-6350390 MS.gene45539:CDS
GTTCTCCATTTGCATTGCAA+TGG 0.547798 2.1:-6347857 MS.gene45539:CDS
ATTGGTCTCCTTCTCGTCAA+AGG 0.548579 2.1:-6350173 MS.gene45539:CDS
TTGAGCTTCGGCTACTTCTG+GGG 0.548970 2.1:+6350265 None:intergenic
GCTTCCTAACTTCTGATCCA+AGG 0.549468 2.1:+6349687 None:intergenic
GTTCCAGACTGGTCCAATCA+AGG 0.550773 2.1:+6350316 None:intergenic
GTTAATGCACATGATATGCT+TGG 0.550960 2.1:-6349793 MS.gene45539:CDS
CTGTTGAACAACCAAACCTC+TGG 0.552434 2.1:+6348819 None:intergenic
CTTTCAATATACTAGTAGGA+TGG 0.558682 2.1:+6349977 None:intergenic
CAGGTGCTGCTGGTAAAAGC+AGG 0.560366 2.1:-6349009 MS.gene45539:CDS
ATTGGACCAGTCTGGAACGT+TGG 0.562574 2.1:-6350311 MS.gene45539:CDS
CATGCTAGCTCAAACATGCC+AGG 0.564429 2.1:-6349202 MS.gene45539:CDS
GCTGCCTTAGGTTTCAGCAG+TGG 0.565371 2.1:+6348959 None:intergenic
GGATCAAGGAATCTCCTCAA+AGG 0.565697 2.1:+6349139 None:intergenic
ATTTGCATTGCAATGGTGGA+TGG 0.566087 2.1:-6347850 MS.gene45539:CDS
GACGAAGGTCCACCATCACT+TGG 0.566445 2.1:+6348260 None:intergenic
CTTTACCAGGTTATTTGGAG+AGG 0.566909 2.1:-6350377 MS.gene45539:CDS
GAGTGAGATTGCACTGATTG+TGG 0.567293 2.1:+6350144 None:intergenic
GGAGAAAGCTTTGAATGTTG+GGG 0.568033 2.1:-6350340 MS.gene45539:CDS
CATCCTACTAGTATATTGAA+AGG 0.568484 2.1:-6349976 MS.gene45539:CDS
TTCTGAACTAGGTTTATGTG+TGG 0.570235 2.1:+6349237 None:intergenic
GGAAGACTATGAACTCCGCT+TGG 0.570545 2.1:+6348281 None:intergenic
GAAAATGCGAGAGGTTATGT+TGG 0.570791 2.1:-6349055 MS.gene45539:CDS
TCGGCCTTTCTAGATCTGCA+TGG 0.571902 2.1:+6349448 None:intergenic
ACTAAAGCAAGGAGATACTC+AGG 0.572897 2.1:-6348420 MS.gene45539:CDS
CATAGTCTTCCAAGTGATGG+TGG 0.574925 2.1:-6348269 MS.gene45539:CDS
TTTATTTCAGAAAGAGTCTG+TGG 0.575556 2.1:-6348915 MS.gene45539:CDS
TCTCTAAGTTCATCTGGCAG+AGG 0.575764 2.1:+6349586 None:intergenic
TTAATGCACATGATATGCTT+GGG 0.581166 2.1:-6349792 MS.gene45539:CDS
AACTGGAGAGACAGGAGGAT+AGG 0.582482 2.1:+6347696 None:intergenic
ATGCAGATCTAGAAAGGCCG+AGG 0.582971 2.1:-6349446 MS.gene45539:CDS
GTACTGCCAACGTTCCAGAC+TGG 0.583526 2.1:+6350305 None:intergenic
ACTAGGTTGTGACTCTTGCT+GGG 0.586985 2.1:+6349555 None:intergenic
GGACTCATTCCCATTCTGAC+GGG 0.587176 2.1:+6349469 None:intergenic
GTGGCATCTTGTCACATGAC+CGG 0.587769 2.1:-6349912 MS.gene45539:CDS
TGAGTAGAAAACCTGTTGAT+GGG 0.591717 2.1:-6350557 MS.gene45539:CDS
AGAGTGGTAGGTCAGGCAAT+GGG 0.592240 2.1:-6348883 MS.gene45539:CDS
ACTTTCTGGTCTACTTCCGT+AGG 0.592655 2.1:+6349379 None:intergenic
TGGACTCATTCCCATTCTGA+CGG 0.592869 2.1:+6349468 None:intergenic
GATCTAGAAAGGCCGAGGAA+AGG 0.593514 2.1:-6349441 MS.gene45539:CDS
GCAGGTCCAGCCCTTTAAGG+AGG 0.593547 2.1:-6348991 MS.gene45539:CDS
ATCCGTACTGAGGACTTATG+TGG 0.598102 2.1:-6350216 MS.gene45539:CDS
ACAGGTGAACTAAAGGGTCA+TGG 0.599263 2.1:-6347751 MS.gene45539:CDS
TACTCAACCGTCCCAAGACA+AGG 0.600053 2.1:-6348653 MS.gene45539:CDS
GCTTCATTTGAGCAATGACA+TGG 0.600466 2.1:+6348525 None:intergenic
CTGACGGGTACGGGTGCCGA+AGG 0.603088 2.1:+6349484 None:intergenic
ATGCCAGGCAGTGATAAACC+TGG 0.604201 2.1:-6349187 MS.gene45539:CDS
AAGAGTGGTAGGTCAGGCAA+TGG 0.607004 2.1:-6348884 MS.gene45539:CDS
GTTCATAGTCTTCCAAGTGA+TGG 0.607090 2.1:-6348272 MS.gene45539:CDS
ACTAGGTTTATGTGTGGCTA+CGG 0.607112 2.1:+6349243 None:intergenic
AAGGCAAACAACTTGTAGAA+GGG 0.607436 2.1:-6350436 MS.gene45539:CDS
AATCGTCTGAATCTAAGAGA+TGG 0.607593 2.1:-6350060 MS.gene45539:CDS
TTGATCCAGAAAGTTCGTAA+GGG 0.612802 2.1:+6347821 None:intergenic
CCATGCTGAAGCTAAGTCGA+CGG 0.615019 2.1:+6349323 None:intergenic
ATTGAGCGCTGGAAAACTGG+TGG 0.616441 2.1:-6348233 MS.gene45539:CDS
CAAATGGAGAACGCTTGCAA+GGG 0.617576 2.1:+6347868 None:intergenic
CTGAAGCTAAGTCGACGGAA+AGG 0.621601 2.1:+6349328 None:intergenic
CGATTCAGATATGTACAGGA+GGG 0.624268 2.1:+6349628 None:intergenic
GTGGCTACGGAGCTCTGGTG+TGG 0.625718 2.1:+6349256 None:intergenic
TTACCAGGTTATTTGGAGAG+GGG 0.628328 2.1:-6350375 MS.gene45539:CDS
AGCAAACTGCCATAACTCCA+TGG 0.631309 2.1:-6349098 MS.gene45539:CDS
TGATCCACTGGTGAAACCAA+AGG 0.635139 2.1:-6349122 MS.gene45539:CDS
GGATCAAGAAACTCCATCGA+GGG 0.636295 2.1:-6347805 MS.gene45539:CDS
ATTTCCAGCATTCTCTCCAG+AGG 0.638927 2.1:+6350080 None:intergenic
TTATGTGGTAATTCTAGAAG+GGG 0.645972 2.1:-6350201 MS.gene45539:CDS
AGTAGAGCTTGAGACGTCGA+AGG 0.647644 2.1:+6348758 None:intergenic
CCTAGTTCAGAAAATGTGAG+AGG 0.652170 2.1:-6349226 MS.gene45539:CDS
GCGATTCAGATATGTACAGG+AGG 0.652506 2.1:+6349627 None:intergenic
ACTGGTGGATCCTGTGATTG+CGG 0.654665 2.1:-6348218 MS.gene45539:CDS
AAGAATTGGACAAGGACCAG+AGG 0.656618 2.1:-6348835 MS.gene45539:CDS
GTCACATGACCGGACTTACG+AGG 0.659708 2.1:-6349902 MS.gene45539:CDS
CAGCGCTCAATAAGCGACGA+AGG 0.662885 2.1:+6348245 None:intergenic
TACCACATAAGTCCTCAGTA+CGG 0.668158 2.1:+6350214 None:intergenic
TTCAAATAGCCAGAACCGTG+TGG 0.669064 2.1:-6348480 MS.gene45539:CDS
TCTGTGGTTACAAATAAGAG+TGG 0.675902 2.1:-6348899 MS.gene45539:CDS
AATTTAAGAGAACAAAGTAG+TGG 0.681012 2.1:-6349817 MS.gene45539:CDS
AGATCTATTACAGGTAACAG+TGG 0.682338 2.1:-6348309 MS.gene45539:CDS
ATCAACTTCTATCCGTACTG+AGG 0.683242 2.1:-6350226 MS.gene45539:CDS
AAAGATTCAGAAAATGCGAG+AGG 0.687291 2.1:-6349064 MS.gene45539:CDS
CTTCCAACTGGAGAGACAGG+AGG 0.690282 2.1:+6347691 None:intergenic
GAGCTTCGGCTACTTCTGGG+GGG 0.691853 2.1:+6350267 None:intergenic
GGTGGATCCTGTGATTGCGG+AGG 0.700883 2.1:-6348215 MS.gene45539:CDS
GGAAGTCGGACAAATAACAC+AGG 0.702519 2.1:-6348575 MS.gene45539:CDS
TCGTGAAGTTACCAAAGACG+AGG 0.707711 2.1:-6350493 MS.gene45539:CDS
CATCGAGGGAAAGAATCAGG+CGG 0.712324 2.1:-6347791 MS.gene45539:CDS
GTAACAGTGGTGCTTCCAAG+CGG 0.717660 2.1:-6348296 MS.gene45539:CDS
TGGATCAAGAAACTCCATCG+AGG 0.728422 2.1:-6347806 MS.gene45539:CDS
AAAGCAAGGAGATACTCAGG+TGG 0.728467 2.1:-6348417 MS.gene45539:CDS
GGTTGAGTACTTCACTGTGG+CGG 0.740443 2.1:+6348667 None:intergenic
GACGGTTGAGTACTTCACTG+TGG 0.749312 2.1:+6348664 None:intergenic
TTGTTCAACAGTTAACACTG+CGG 0.773091 2.1:-6348807 MS.gene45539:CDS
AAACTGCCATAACTCCATGG+AGG 0.775149 2.1:-6349095 MS.gene45539:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGTAGATTAATCTTAGT+TGG - chr2.1:6350203-6350222 MS.gene45539:CDS 20.0%
!! TTTACATCCACATATTATTA+AGG - chr2.1:6348304-6348323 MS.gene45539:CDS 20.0%
!!! CTATACTTTTTTCACATTTA+GGG - chr2.1:6349627-6349646 MS.gene45539:CDS 20.0%
!!! CTCTTTCTGAAATAAATTTA+TGG + chr2.1:6349323-6349342 None:intergenic 20.0%
!!! TCTATACTTTTTTCACATTT+AGG - chr2.1:6349626-6349645 MS.gene45539:CDS 20.0%
! AAATGGGAAAAATTGAAAAC+AGG + chr2.1:6350311-6350330 None:intergenic 25.0%
! AATTTAAGAGAACAAAGTAG+TGG - chr2.1:6348425-6348444 MS.gene45539:CDS 25.0%
! AGATTAATCTACAATATGCT+AGG + chr2.1:6350199-6350218 None:intergenic 25.0%
! ATCAAATGGAAAAGAAAAAG+GGG - chr2.1:6348402-6348421 MS.gene45539:CDS 25.0%
! CTAGGTAATATAAGAACAAT+TGG + chr2.1:6348485-6348504 None:intergenic 25.0%
! GAAATAAATTTATGGAGTGA+TGG + chr2.1:6349315-6349334 None:intergenic 25.0%
! GATCAAATGGAAAAGAAAAA+GGG - chr2.1:6348401-6348420 MS.gene45539:CDS 25.0%
! TATACTACCTGAAAAAGAAT+TGG - chr2.1:6349393-6349412 MS.gene45539:CDS 25.0%
! TGATCAAATGGAAAAGAAAA+AGG - chr2.1:6348400-6348419 MS.gene45539:CDS 25.0%
! TTAAAAAGAAGAATGGAAGT+CGG - chr2.1:6349653-6349672 MS.gene45539:CDS 25.0%
!! CAAATAATCTTGTTTGACTA+TGG + chr2.1:6348580-6348599 None:intergenic 25.0%
!! TTTTCTGTAAAACTAAAGCA+AGG - chr2.1:6349811-6349830 MS.gene45539:CDS 25.0%
!!! AACAGGAATTTTGAAACTTT+CGG + chr2.1:6348723-6348742 None:intergenic 25.0%
!!! TACAGTGATTGTTTTTATGA+GGG + chr2.1:6348514-6348533 None:intergenic 25.0%
AAGCTATGAATGCTAAATAC+AGG - chr2.1:6350259-6350278 MS.gene45539:CDS 30.0%
AATAACACAGGAAAAAGCAA+AGG - chr2.1:6349679-6349698 MS.gene45539:CDS 30.0%
AATATACTCCAGGTTCAAAA+TGG + chr2.1:6350328-6350347 None:intergenic 30.0%
ACTTATGTGGTAATTCTAGA+AGG - chr2.1:6348039-6348058 MS.gene45539:intron 30.0%
AGCTATGAATGCTAAATACA+GGG - chr2.1:6350260-6350279 MS.gene45539:CDS 30.0%
ATATACTAGTAGGATGGTTT+CGG + chr2.1:6348262-6348281 None:intergenic 30.0%
ATATACTCCAGGTTCAAAAT+GGG + chr2.1:6350327-6350346 None:intergenic 30.0%
CATCCTACTAGTATATTGAA+AGG - chr2.1:6348266-6348285 MS.gene45539:CDS 30.0%
CCACATATTATTAAGGAAAG+TGG - chr2.1:6348311-6348330 MS.gene45539:CDS 30.0%
CCACTTTCCTTAATAATATG+TGG + chr2.1:6348314-6348333 None:intergenic 30.0%
CTTTCAATATACTAGTAGGA+TGG + chr2.1:6348268-6348287 None:intergenic 30.0%
GAAAACTTTACCAGGTTATT+TGG - chr2.1:6347860-6347879 MS.gene45539:CDS 30.0%
GAACCTTTCAATATACTAGT+AGG + chr2.1:6348272-6348291 None:intergenic 30.0%
GGATAACCAACTTAAATCAA+TGG + chr2.1:6350174-6350193 None:intergenic 30.0%
TAATCTACAATATGCTAGGA+AGG + chr2.1:6350195-6350214 None:intergenic 30.0%
TGAATGTCAAGATCTATTAC+AGG - chr2.1:6349924-6349943 MS.gene45539:CDS 30.0%
TTAATGCACATGATATGCTT+GGG - chr2.1:6348450-6348469 MS.gene45539:CDS 30.0%
TTTATTTCAGAAAGAGTCTG+TGG - chr2.1:6349327-6349346 MS.gene45539:CDS 30.0%
! AATTTTTCCCATTTTGAACC+TGG - chr2.1:6350317-6350336 MS.gene45539:CDS 30.0%
! CTTATGTGGTAATTCTAGAA+GGG - chr2.1:6348040-6348059 MS.gene45539:intron 30.0%
! TTATGTGGTAATTCTAGAAG+GGG - chr2.1:6348041-6348060 MS.gene45539:intron 30.0%
!! AAGGTTTTTCGAATCAACAA+AGG - chr2.1:6347787-6347806 MS.gene45539:CDS 30.0%
!! TATGTTGGTTCAAACATTTC+AGG - chr2.1:6349202-6349221 MS.gene45539:CDS 30.0%
!! TCTCTTCCATTGATTTAAGT+TGG - chr2.1:6350165-6350184 MS.gene45539:CDS 30.0%
!!! CTACAGTGATTGTTTTTATG+AGG + chr2.1:6348515-6348534 None:intergenic 30.0%
!!! TACTTTTTTCACATTTAGGG+AGG - chr2.1:6349630-6349649 MS.gene45539:CDS 30.0%
!!! TTCTACTTTTTCAGAACCTT+CGG - chr2.1:6348742-6348761 MS.gene45539:CDS 30.0%
!!! TTCTTTTTCAGGTAGTATAG+TGG + chr2.1:6349392-6349411 None:intergenic 30.0%
AAAGATTCAGAAAATGCGAG+AGG - chr2.1:6349178-6349197 MS.gene45539:CDS 35.0%
AAAGCTACTGAATATACTCC+AGG + chr2.1:6350338-6350357 None:intergenic 35.0%
AAAGGCAAACAACTTGTAGA+AGG - chr2.1:6347805-6347824 MS.gene45539:CDS 35.0%
AACATTTCAGGCAACAAATC+AGG - chr2.1:6349214-6349233 MS.gene45539:CDS 35.0%
AAGCACATGAAAACTTTACC+AGG - chr2.1:6347852-6347871 MS.gene45539:CDS 35.0%
AAGGCAAACAACTTGTAGAA+GGG - chr2.1:6347806-6347825 MS.gene45539:CDS 35.0%
AATCGTCTGAATCTAAGAGA+TGG - chr2.1:6348182-6348201 MS.gene45539:CDS 35.0%
ACATACAGCGAAAAAATGTC+CGG - chr2.1:6348219-6348238 MS.gene45539:CDS 35.0%
ACCTGAAAAAGAATTGGACA+AGG - chr2.1:6349399-6349418 MS.gene45539:CDS 35.0%
AGATCTATTACAGGTAACAG+TGG - chr2.1:6349933-6349952 MS.gene45539:CDS 35.0%
AGGATCTGACAGCTATATAA+TGG + chr2.1:6348145-6348164 None:intergenic 35.0%
AGGGAGGTTAAAAAGAAGAA+TGG - chr2.1:6349646-6349665 MS.gene45539:CDS 35.0%
ATGAGTAGAAAACCTGTTGA+TGG - chr2.1:6347684-6347703 MS.gene45539:CDS 35.0%
ATGCGTATAACTGATAGCTT+TGG + chr2.1:6349899-6349918 None:intergenic 35.0%
ATTGCGATTCAGATATGTAC+AGG + chr2.1:6348621-6348640 None:intergenic 35.0%
CTGAGAATATCCATGAAGAA+TGG - chr2.1:6349505-6349524 MS.gene45539:CDS 35.0%
GAGGCAGACAAATCTTTAAA+AGG - chr2.1:6347768-6347787 MS.gene45539:CDS 35.0%
GATCAAGTAACCTCCTTAAA+GGG + chr2.1:6349264-6349283 None:intergenic 35.0%
GCTATGAATGCTAAATACAG+GGG - chr2.1:6350261-6350280 MS.gene45539:CDS 35.0%
GGCTTCACAAATAAAGTTTC+TGG - chr2.1:6348941-6348960 MS.gene45539:CDS 35.0%
GGGAAAAATTGAAAACAGGA+CGG + chr2.1:6350307-6350326 None:intergenic 35.0%
GTTAATGCACATGATATGCT+TGG - chr2.1:6348449-6348468 MS.gene45539:CDS 35.0%
GTTCAAACAGGTGAACTAAA+GGG - chr2.1:6350485-6350504 MS.gene45539:CDS 35.0%
TACTAGAAGATGTTGAGCTT+CGG + chr2.1:6347992-6348011 None:intergenic 35.0%
TATACTAGTAGGATGGTTTC+GGG + chr2.1:6348261-6348280 None:intergenic 35.0%
TCAATGGAAGAGAAAATACC+TGG + chr2.1:6350158-6350177 None:intergenic 35.0%
TCTGCACGTTTGATTATTGT+TGG + chr2.1:6350085-6350104 None:intergenic 35.0%
TCTGTGGTTACAAATAAGAG+TGG - chr2.1:6349343-6349362 MS.gene45539:CDS 35.0%
TGACTTTCTCTAAGTTCATC+TGG + chr2.1:6348665-6348684 None:intergenic 35.0%
TGAGTAGAAAACCTGTTGAT+GGG - chr2.1:6347685-6347704 MS.gene45539:CDS 35.0%
TGCGTATAACTGATAGCTTT+GGG + chr2.1:6349898-6349917 None:intergenic 35.0%
TGGTTACAAATAAGAGTGGT+AGG - chr2.1:6349347-6349366 MS.gene45539:CDS 35.0%
TTCTGAACTAGGTTTATGTG+TGG + chr2.1:6349008-6349027 None:intergenic 35.0%
TTGATCCAGAAAGTTCGTAA+GGG + chr2.1:6350424-6350443 None:intergenic 35.0%
TTGTTCAACAGTTAACACTG+CGG - chr2.1:6349435-6349454 MS.gene45539:CDS 35.0%
TTTACCAGGTTATTTGGAGA+GGG - chr2.1:6347866-6347885 MS.gene45539:CDS 35.0%
! ATTCTAGAAGGGGTCTAAAT+TGG - chr2.1:6348051-6348070 MS.gene45539:intron 35.0%
! GGAGTATATTCAGTAGCTTT+TGG - chr2.1:6350338-6350357 MS.gene45539:CDS 35.0%
! GTATATTGAAAGGTTCTGAC+AGG - chr2.1:6348276-6348295 MS.gene45539:CDS 35.0%
! GTTTCTCAGTAGTTACTTTC+TGG + chr2.1:6348880-6348899 None:intergenic 35.0%
! TACGACAAAGAAGAGTTTTC+AGG + chr2.1:6347717-6347736 None:intergenic 35.0%
! TCCTTGTCCAATTCTTTTTC+AGG + chr2.1:6349403-6349422 None:intergenic 35.0%
! TTTGAAACTTTCGGCATCAA+TGG + chr2.1:6348714-6348733 None:intergenic 35.0%
! TTTTTATGAGGGTTGTCTCT+AGG + chr2.1:6348503-6348522 None:intergenic 35.0%
!! GAATCTCTATTGGTTCAAAC+AGG - chr2.1:6350473-6350492 MS.gene45539:CDS 35.0%
!! GGTTCTGAAAAAGTAGAAAC+AGG + chr2.1:6348740-6348759 None:intergenic 35.0%
!! TAAAGTTTCTGGCTGTAAAG+AGG - chr2.1:6348952-6348971 MS.gene45539:CDS 35.0%
AAACTCCCTTACGAACTTTC+TGG - chr2.1:6350416-6350435 MS.gene45539:CDS 40.0%
AACTGCATTCACCTTGTCTT+GGG + chr2.1:6349603-6349622 None:intergenic 40.0%
ACAAATAAGAGTGGTAGGTC+AGG - chr2.1:6349352-6349371 MS.gene45539:CDS 40.0%
ACAACCTTGGATCAGAAGTT+AGG - chr2.1:6348551-6348570 MS.gene45539:CDS 40.0%
ACTAAAGCAAGGAGATACTC+AGG - chr2.1:6349822-6349841 MS.gene45539:CDS 40.0%
ACTAGGTTTATGTGTGGCTA+CGG + chr2.1:6349002-6349021 None:intergenic 40.0%
AGTGATAAACCTGGAAATGC+TGG - chr2.1:6349064-6349083 MS.gene45539:CDS 40.0%
ATCAACTTCTATCCGTACTG+AGG - chr2.1:6348016-6348035 MS.gene45539:intron 40.0%
ATCAGTGCAATCTCACTCTA+TGG - chr2.1:6348103-6348122 MS.gene45539:intron 40.0%
ATCCACCATTGCAATGCAAA+TGG + chr2.1:6350393-6350412 None:intergenic 40.0%
CAACATTCAAAGCTTTCTCC+GGG + chr2.1:6347902-6347921 None:intergenic 40.0%
CCAACATTCAAAGCTTTCTC+CGG + chr2.1:6347903-6347922 None:intergenic 40.0%
CCCACAGCAAATGTAAAAAG+GGG + chr2.1:6349535-6349554 None:intergenic 40.0%
CCTAGTTCAGAAAATGTGAG+AGG - chr2.1:6349016-6349035 MS.gene45539:CDS 40.0%
CGATTCAGATATGTACAGGA+GGG + chr2.1:6348617-6348636 None:intergenic 40.0%
CTTGATCCAGAAAGTTCGTA+AGG + chr2.1:6350425-6350444 None:intergenic 40.0%
CTTTACCAGGTTATTTGGAG+AGG - chr2.1:6347865-6347884 MS.gene45539:CDS 40.0%
GAAAATGCGAGAGGTTATGT+TGG - chr2.1:6349187-6349206 MS.gene45539:CDS 40.0%
GATCAAGGAATCTCCTCAAA+GGG + chr2.1:6349105-6349124 None:intergenic 40.0%
GCCCACAGCAAATGTAAAAA+GGG + chr2.1:6349536-6349555 None:intergenic 40.0%
GCTTCATTTGAGCAATGACA+TGG + chr2.1:6349720-6349739 None:intergenic 40.0%
GGATCAAGTAACCTCCTTAA+AGG + chr2.1:6349265-6349284 None:intergenic 40.0%
GGGAAAGATGATCAATAGTC+CGG + chr2.1:6348241-6348260 None:intergenic 40.0%
GGTTCAAACAGGTGAACTAA+AGG - chr2.1:6350484-6350503 MS.gene45539:CDS 40.0%
GTTCATAGTCTTCCAAGTGA+TGG - chr2.1:6349970-6349989 MS.gene45539:CDS 40.0%
GTTCTCCATTTGCATTGCAA+TGG - chr2.1:6350385-6350404 MS.gene45539:CDS 40.0%
TACCACATAAGTCCTCAGTA+CGG + chr2.1:6348031-6348050 None:intergenic 40.0%
TATATAGCTGTCAGATCCTC+TGG - chr2.1:6348146-6348165 MS.gene45539:CDS 40.0%
TCCAAGGTTGTTTGCATATC+AGG + chr2.1:6348542-6348561 None:intergenic 40.0%
TCCTGATATGCAAACAACCT+TGG - chr2.1:6348538-6348557 MS.gene45539:CDS 40.0%
TGCCCACAGCAAATGTAAAA+AGG + chr2.1:6349537-6349556 None:intergenic 40.0%
TTACCAGGTTATTTGGAGAG+GGG - chr2.1:6347867-6347886 MS.gene45539:CDS 40.0%
! ATCTTTTTGCGATACCTCCA+TGG + chr2.1:6349164-6349183 None:intergenic 40.0%
! ATTTGCATTGCAATGGTGGA+TGG - chr2.1:6350392-6350411 MS.gene45539:CDS 40.0%
! CCTCTCACATTTTCTGAACT+AGG + chr2.1:6349019-6349038 None:intergenic 40.0%
! CTTTTGTGATAGAGTCCACA+CGG + chr2.1:6349780-6349799 None:intergenic 40.0%
! TATGTACAGGAGGGTTGATT+CGG + chr2.1:6348608-6348627 None:intergenic 40.0%
! TCAGTATGAGCTTTTCTTCC+AGG - chr2.1:6350137-6350156 MS.gene45539:CDS 40.0%
!! AGTGAGATTGCACTGATTGT+GGG + chr2.1:6348100-6348119 None:intergenic 40.0%
!! CGGAGAAAGCTTTGAATGTT+GGG - chr2.1:6347901-6347920 MS.gene45539:CDS 40.0%
!! GGAGAAAGCTTTGAATGTTG+GGG - chr2.1:6347902-6347921 MS.gene45539:CDS 40.0%
!!! CCCCTTTTTACATTTGCTGT+GGG - chr2.1:6349532-6349551 MS.gene45539:CDS 40.0%
AAACTGCCATAACTCCATGG+AGG - chr2.1:6349147-6349166 MS.gene45539:CDS 45.0%
AAAGCAAGGAGATACTCAGG+TGG - chr2.1:6349825-6349844 MS.gene45539:CDS 45.0%
AACTAGGTTGTGACTCTTGC+TGG + chr2.1:6348691-6348710 None:intergenic 45.0%
AAGAATTGGACAAGGACCAG+AGG - chr2.1:6349407-6349426 MS.gene45539:CDS 45.0%
AAGTAACCTCCTTAAAGGGC+TGG + chr2.1:6349260-6349279 None:intergenic 45.0%
ACAGGTGAACTAAAGGGTCA+TGG - chr2.1:6350491-6350510 MS.gene45539:CDS 45.0%
ACTAGGTTGTGACTCTTGCT+GGG + chr2.1:6348690-6348709 None:intergenic 45.0%
AGATTTGTCTGCCTCGTCTT+TGG + chr2.1:6347763-6347782 None:intergenic 45.0%
AGCAAACTGCCATAACTCCA+TGG - chr2.1:6349144-6349163 MS.gene45539:CDS 45.0%
ATCCGTACTGAGGACTTATG+TGG - chr2.1:6348026-6348045 MS.gene45539:intron 45.0%
ATGACATGGCGAACGTAATC+AGG + chr2.1:6349706-6349725 None:intergenic 45.0%
ATTTCCAGCATTCTCTCCAG+AGG + chr2.1:6348165-6348184 None:intergenic 45.0%
CAAATGGAGAACGCTTGCAA+GGG + chr2.1:6350377-6350396 None:intergenic 45.0%
CAACTGCATTCACCTTGTCT+TGG + chr2.1:6349604-6349623 None:intergenic 45.0%
CATAGTCTTCCAAGTGATGG+TGG - chr2.1:6349973-6349992 MS.gene45539:CDS 45.0%
CTCCATTTGCATTGCAATGG+TGG - chr2.1:6350388-6350407 MS.gene45539:CDS 45.0%
CTGGAAATGCTGGCAAAAAC+AGG - chr2.1:6349074-6349093 MS.gene45539:CDS 45.0%
CTGTTGAACAACCAAACCTC+TGG + chr2.1:6349426-6349445 None:intergenic 45.0%
CTTTCGGCATCAATGGAACT+AGG + chr2.1:6348707-6348726 None:intergenic 45.0%
GAATCAGGCGGAATCTCTAT+TGG - chr2.1:6350463-6350482 MS.gene45539:CDS 45.0%
GAGCACGCAAGATGATCAAA+TGG - chr2.1:6348388-6348407 MS.gene45539:CDS 45.0%
GAGTCCATGCAGATCTAGAA+AGG - chr2.1:6348790-6348809 MS.gene45539:CDS 45.0%
GCGATTCAGATATGTACAGG+AGG + chr2.1:6348618-6348637 None:intergenic 45.0%
GCTTCCTAACTTCTGATCCA+AGG + chr2.1:6348558-6348577 None:intergenic 45.0%
GGAAGTCGGACAAATAACAC+AGG - chr2.1:6349667-6349686 MS.gene45539:CDS 45.0%
GGATCAAGAAACTCCATCGA+GGG - chr2.1:6350437-6350456 MS.gene45539:CDS 45.0%
GGATCAAGGAATCTCCTCAA+AGG + chr2.1:6349106-6349125 None:intergenic 45.0%
GGGATTATCCTTTGACGAGA+AGG + chr2.1:6348080-6348099 None:intergenic 45.0%
TCAGGTTTGAACCCATCAAC+AGG + chr2.1:6347699-6347718 None:intergenic 45.0%
TCGTGAAGTTACCAAAGACG+AGG - chr2.1:6347749-6347768 MS.gene45539:CDS 45.0%
TCTCTAAGTTCATCTGGCAG+AGG + chr2.1:6348659-6348678 None:intergenic 45.0%
TGAATGTTGGGGTCCTTGAT+TGG - chr2.1:6347913-6347932 MS.gene45539:CDS 45.0%
TGATCCACTGCTGAAACCTA+AGG - chr2.1:6349279-6349298 MS.gene45539:CDS 45.0%
TGATCCACTGGTGAAACCAA+AGG - chr2.1:6349120-6349139 MS.gene45539:CDS 45.0%
TGGACTCATTCCCATTCTGA+CGG + chr2.1:6348777-6348796 None:intergenic 45.0%
TGGATCAAGAAACTCCATCG+AGG - chr2.1:6350436-6350455 MS.gene45539:CDS 45.0%
TTCAAATAGCCAGAACCGTG+TGG - chr2.1:6349762-6349781 MS.gene45539:CDS 45.0%
TTGGTTTCACCAGTGGATCA+AGG + chr2.1:6349120-6349139 None:intergenic 45.0%
TTTCCAGGTTTATCACTGCC+TGG + chr2.1:6349061-6349080 None:intergenic 45.0%
! ACTTTCTGGTCTACTTCCGT+AGG + chr2.1:6348866-6348885 None:intergenic 45.0%
! ATTGGTCTCCTTCTCGTCAA+AGG - chr2.1:6348069-6348088 MS.gene45539:intron 45.0%
!! CCGGAGAAAGCTTTGAATGT+TGG - chr2.1:6347900-6347919 MS.gene45539:CDS 45.0%
!! CTTATTGAGCGCTGGAAAAC+TGG - chr2.1:6350006-6350025 MS.gene45539:CDS 45.0%
!! GAGTGAGATTGCACTGATTG+TGG + chr2.1:6348101-6348120 None:intergenic 45.0%
!! GCCCCTTTTTACATTTGCTG+TGG - chr2.1:6349531-6349550 MS.gene45539:CDS 45.0%
!! TTATGGCAGTTTGCTGCCTT+TGG + chr2.1:6349139-6349158 None:intergenic 45.0%
!!! CTGTTTTTGCCAGCATTTCC+AGG + chr2.1:6349076-6349095 None:intergenic 45.0%
AAAACAGGTCCAGCCCTTTG+AGG - chr2.1:6349089-6349108 MS.gene45539:CDS 50.0%
AAAGCAGGTCCAGCCCTTTA+AGG - chr2.1:6349248-6349267 MS.gene45539:CDS 50.0%
AACAGTGCGCTTCCTTTCCT+CGG + chr2.1:6348816-6348835 None:intergenic 50.0%
AACTGGAGAGACAGGAGGAT+AGG + chr2.1:6350549-6350568 None:intergenic 50.0%
AAGAGTGGTAGGTCAGGCAA+TGG - chr2.1:6349358-6349377 MS.gene45539:CDS 50.0%
AAGGAATCTCCTCAAAGGGC+TGG + chr2.1:6349101-6349120 None:intergenic 50.0%
AAGGGGCTGACCATTCTTCA+TGG + chr2.1:6349518-6349537 None:intergenic 50.0%
AAGTTCATCTGGCAGAGGAC+AGG + chr2.1:6348654-6348673 None:intergenic 50.0%
AGAGTGGTAGGTCAGGCAAT+GGG - chr2.1:6349359-6349378 MS.gene45539:CDS 50.0%
AGTAGAGCTTGAGACGTCGA+AGG + chr2.1:6349487-6349506 None:intergenic 50.0%
ATAGCAGCAAGCTCGTCATC+TGG + chr2.1:6349862-6349881 None:intergenic 50.0%
ATCCTGTGATTGCGGAGGTT+GGG - chr2.1:6350032-6350051 MS.gene45539:CDS 50.0%
ATGCAGATCTAGAAAGGCCG+AGG - chr2.1:6348796-6348815 MS.gene45539:CDS 50.0%
ATGCCAGGCAGTGATAAACC+TGG - chr2.1:6349055-6349074 MS.gene45539:CDS 50.0%
CATCGAGGGAAAGAATCAGG+CGG - chr2.1:6350451-6350470 MS.gene45539:CDS 50.0%
CATGCTAGCTCAAACATGCC+AGG - chr2.1:6349040-6349059 MS.gene45539:CDS 50.0%
CCATGCTGAAGCTAAGTCGA+CGG + chr2.1:6348922-6348941 None:intergenic 50.0%
CGGAAAGGTGAAGAGCTTCT+TGG + chr2.1:6348902-6348921 None:intergenic 50.0%
CTCCATCGAGGGAAAGAATC+AGG - chr2.1:6350448-6350467 MS.gene45539:CDS 50.0%
CTCTGCAAATGCACCTCCTA+CGG - chr2.1:6348847-6348866 MS.gene45539:CDS 50.0%
CTGAAGCTAAGTCGACGGAA+AGG + chr2.1:6348917-6348936 None:intergenic 50.0%
GACGGTTGAGTACTTCACTG+TGG + chr2.1:6349581-6349600 None:intergenic 50.0%
GAGGAGATTCCTTGATCCAC+TGG - chr2.1:6349108-6349127 MS.gene45539:CDS 50.0%
GATCTAGAAAGGCCGAGGAA+AGG - chr2.1:6348801-6348820 MS.gene45539:CDS 50.0%
GCAAATGGAGAACGCTTGCA+AGG + chr2.1:6350378-6350397 None:intergenic 50.0%
GCATTCACCTTGTCTTGGGA+CGG + chr2.1:6349599-6349618 None:intergenic 50.0%
GCGATACCTCCATGGAGTTA+TGG + chr2.1:6349156-6349175 None:intergenic 50.0%
GGAAGACTATGAACTCCGCT+TGG + chr2.1:6349964-6349983 None:intergenic 50.0%
GGACTCATTCCCATTCTGAC+GGG + chr2.1:6348776-6348795 None:intergenic 50.0%
GGAGAGGGGAGAAAAAATCC+CGG - chr2.1:6347881-6347900 MS.gene45539:CDS 50.0%
GGCAGCTTCACATGCTAAGT+TGG - chr2.1:6348361-6348380 MS.gene45539:CDS 50.0%
GGTTGAGTACTTCACTGTGG+CGG + chr2.1:6349578-6349597 None:intergenic 50.0%
GTAACAGTGGTGCTTCCAAG+CGG - chr2.1:6349946-6349965 MS.gene45539:CDS 50.0%
GTGGCATCTTGTCACATGAC+CGG - chr2.1:6348330-6348349 MS.gene45539:CDS 50.0%
GTTGAGCTTCGGCTACTTCT+GGG + chr2.1:6347981-6348000 None:intergenic 50.0%
TACTCAACCGTCCCAAGACA+AGG - chr2.1:6349589-6349608 MS.gene45539:CDS 50.0%
TATCCTCCTGTCTCTCCAGT+TGG - chr2.1:6350548-6350567 MS.gene45539:CDS 50.0%
TCCTGTCTCTCCAGTTGGAA+GGG - chr2.1:6350553-6350572 MS.gene45539:CDS 50.0%
TCGGCCTTTCTAGATCTGCA+TGG + chr2.1:6348797-6348816 None:intergenic 50.0%
TCTCCCCTCTCCAAATAACC+TGG + chr2.1:6347873-6347892 None:intergenic 50.0%
TGATAGAGTCCACACGGTTC+TGG + chr2.1:6349774-6349793 None:intergenic 50.0%
TGATTGCGGAGGTTGGGATT+TGG - chr2.1:6350038-6350057 MS.gene45539:CDS 50.0%
TGTTGAGCTTCGGCTACTTC+TGG + chr2.1:6347982-6348001 None:intergenic 50.0%
TTCTGGTCTACTTCCGTAGG+AGG + chr2.1:6348863-6348882 None:intergenic 50.0%
TTGAGCTTCGGCTACTTCTG+GGG + chr2.1:6347980-6347999 None:intergenic 50.0%
TTGGACAAGGACCAGAGGTT+TGG - chr2.1:6349412-6349431 MS.gene45539:CDS 50.0%
! ACTGGTGGATCCTGTGATTG+CGG - chr2.1:6350024-6350043 MS.gene45539:CDS 50.0%
! AGATCCTCTGGAGAGAATGC+TGG - chr2.1:6348158-6348177 MS.gene45539:CDS 50.0%
! ATTCCCATTCTGACGGGTAC+GGG + chr2.1:6348770-6348789 None:intergenic 50.0%
! ATTGGACCAGTCTGGAACGT+TGG - chr2.1:6347931-6347950 MS.gene45539:CDS 50.0%
! CATTCCCATTCTGACGGGTA+CGG + chr2.1:6348771-6348790 None:intergenic 50.0%
! GTTCCAGACTGGTCCAATCA+AGG + chr2.1:6347929-6347948 None:intergenic 50.0%
!! ATTGAGCGCTGGAAAACTGG+TGG - chr2.1:6350009-6350028 MS.gene45539:CDS 50.0%
!! CGTCGACTTAGCTTCAGCAT+GGG - chr2.1:6348920-6348939 MS.gene45539:CDS 50.0%
!! TGATGGCAGTTTGCTGCCTT+AGG + chr2.1:6349298-6349317 None:intergenic 50.0%
ACCCTTCCAACTGGAGAGAC+AGG + chr2.1:6350557-6350576 None:intergenic 55.0%
ATCCCAACCTCCGCAATCAC+AGG + chr2.1:6350037-6350056 None:intergenic 55.0%
CAGCGCTCAATAAGCGACGA+AGG + chr2.1:6350000-6350019 None:intergenic 55.0%
CGCCTGATTCTTTCCCTCGA+TGG + chr2.1:6350453-6350472 None:intergenic 55.0%
CTCCTGTCTCTCCAGTTGGA+AGG - chr2.1:6350552-6350571 MS.gene45539:CDS 55.0%
CTTCCAACTGGAGAGACAGG+AGG + chr2.1:6350554-6350573 None:intergenic 55.0%
CTTCGTCGCTTATTGAGCGC+TGG - chr2.1:6349998-6350017 MS.gene45539:CDS 55.0%
GACGAAGGTCCACCATCACT+TGG + chr2.1:6349985-6350004 None:intergenic 55.0%
GATCCTGTGATTGCGGAGGT+TGG - chr2.1:6350031-6350050 MS.gene45539:CDS 55.0%
GCTGCCTTAGGTTTCAGCAG+TGG + chr2.1:6349286-6349305 None:intergenic 55.0%
GGTCCTTGATTGGACCAGTC+TGG - chr2.1:6347923-6347942 MS.gene45539:CDS 55.0%
GTACTGCCAACGTTCCAGAC+TGG + chr2.1:6347940-6347959 None:intergenic 55.0%
GTCACATGACCGGACTTACG+AGG - chr2.1:6348340-6348359 MS.gene45539:CDS 55.0%
GTGAAGCTGCCTCGTAAGTC+CGG + chr2.1:6348352-6348371 None:intergenic 55.0%
TATGTGTGGCTACGGAGCTC+TGG + chr2.1:6348994-6349013 None:intergenic 55.0%
TGAGCTTCGGCTACTTCTGG+GGG + chr2.1:6347979-6347998 None:intergenic 55.0%
! GCTGCCTTTGGTTTCACCAG+TGG + chr2.1:6349127-6349146 None:intergenic 55.0%
! GGATAGGCAGCGTAACTTGC+AGG + chr2.1:6350533-6350552 None:intergenic 55.0%
! GGCAACAAATCAGGTGCTGC+TGG - chr2.1:6349223-6349242 MS.gene45539:CDS 55.0%
!! CAGGTGCTGCTGGTAAAAGC+AGG - chr2.1:6349233-6349252 MS.gene45539:CDS 55.0%
!! CCGTCGACTTAGCTTCAGCA+TGG - chr2.1:6348919-6348938 MS.gene45539:CDS 55.0%
GAGCTTCGGCTACTTCTGGG+GGG + chr2.1:6347978-6347997 None:intergenic 60.0%
GCACCCGTACCCGTCAGAAT+GGG - chr2.1:6348764-6348783 MS.gene45539:CDS 60.0%
GGTGGATCCTGTGATTGCGG+AGG - chr2.1:6350027-6350046 MS.gene45539:CDS 60.0%
! GCAGGTCCAGCCCTTTAAGG+AGG - chr2.1:6349251-6349270 MS.gene45539:CDS 60.0%
GGCACCCGTACCCGTCAGAA+TGG - chr2.1:6348763-6348782 MS.gene45539:CDS 65.0%
! GTGGCTACGGAGCTCTGGTG+TGG + chr2.1:6348989-6349008 None:intergenic 65.0%
!! CTGACGGGTACGGGTGCCGA+AGG + chr2.1:6348761-6348780 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6347684 6350580 6347684 ID=MS.gene45539
chr2.1 mRNA 6347684 6350580 6347684 ID=MS.gene45539.t1;Parent=MS.gene45539
chr2.1 exon 6348106 6350580 6348106 ID=MS.gene45539.t1.exon1;Parent=MS.gene45539.t1
chr2.1 CDS 6348106 6350580 6348106 ID=cds.MS.gene45539.t1;Parent=MS.gene45539.t1
chr2.1 exon 6347684 6347983 6347684 ID=MS.gene45539.t1.exon2;Parent=MS.gene45539.t1
chr2.1 CDS 6347684 6347983 6347684 ID=cds.MS.gene45539.t1;Parent=MS.gene45539.t1
Gene Sequence

>MS.gene45539

ATGAGTAGAAAACCTGTTGATGGGTTCAAACCTGAAAACTCTTCTTTGTCGTACGCTGATTTTCATCGTGAAGTTACCAAAGACGAGGCAGACAAATCTTTAAAAGGTTTTTCGAATCAACAAAGGCAAACAACTTGTAGAAGGGAAAATGATGAAGATGAGCTTGTTAAGCACATGAAAACTTTACCAGGTTATTTGGAGAGGGGAGAAAAAATCCCGGAGAAAGCTTTGAATGTTGGGGTCCTTGATTGGACCAGTCTGGAACGTTGGCAGTACAGCAATAAACTTGTACCCCCCAGAAGTAGCCGAAGCTCAACATCTTCTAGTAATACATCAACTTCTATCCGTACTGAGGACTTATGTGGTAATTCTAGAAGGGGTCTAAATTGGTCTCCTTCTCGTCAAAGGATAATCCCACAATCAGTGCAATCTCACTCTATGGCTTCTACAAAGCAAGACCATTATATAGCTGTCAGATCCTCTGGAGAGAATGCTGGAAATCGTCTGAATCTAAGAGATGGCAACAGTAGTATTGACATACAGCGAAAAAATGTCCGGACTATTGATCATCTTTCCCGAAACCATCCTACTAGTATATTGAAAGGTTCTGACAGGAAACATTTACATCCACATATTATTAAGGAAAGTGGCATCTTGTCACATGACCGGACTTACGAGGCAGCTTCACATGCTAAGTTGGAAATGAGCACGCAAGATGATCAAATGGAAAAGAAAAAGGGGAATTTAAGAGAACAAAGTAGTGGTGTTAATGCACATGATATGCTTGGGAAAAGCAAACCAATTGTTCTTATATTACCTAGAGACAACCCTCATAAAAACAATCACTGTAGAGCTCCTGATATGCAAACAACCTTGGATCAGAAGTTAGGAAGCCATAGTCAAACAAGATTATTTGTAAATCCGAATCAACCCTCCTGTACATATCTGAATCGCAATGCTTCACACTCCTGTCCTCTGCCAGATGAACTTAGAGAAAGTCATTCCCAGCAAGAGTCACAACCTAGTTCCATTGATGCCGAAAGTTTCAAAATTCCTGTTTCTACTTTTTCAGAACCTTCGGCACCCGTACCCGTCAGAATGGGAATGAGTCCATGCAGATCTAGAAAGGCCGAGGAAAGGAAGCGCACTGTTGCTGTATCTTGCTCTGCAAATGCACCTCCTACGGAAGTAGACCAGAAAGTAACTACTGAGAAACCAAGAAGCTCTTCACCTTTCCGTCGACTTAGCTTCAGCATGGGCTTCACAAATAAAGTTTCTGGCTGTAAAGAGGTTGCATATGTTCCACACCAGAGCTCCGTAGCCACACATAAACCTAGTTCAGAAAATGTGAGAGGTCATGCTAGCTCAAACATGCCAGGCAGTGATAAACCTGGAAATGCTGGCAAAAACAGGTCCAGCCCTTTGAGGAGATTCCTTGATCCACTGGTGAAACCAAAGGCAGCAAACTGCCATAACTCCATGGAGGTATCGCAAAAAGATTCAGAAAATGCGAGAGGTTATGTTGGTTCAAACATTTCAGGCAACAAATCAGGTGCTGCTGGTAAAAGCAGGTCCAGCCCTTTAAGGAGGTTACTTGATCCACTGCTGAAACCTAAGGCAGCAAACTGCCATCACTCCATAAATTTATTTCAGAAAGAGTCTGTGGTTACAAATAAGAGTGGTAGGTCAGGCAATGGGAAATGTTCCACTATACTACCTGAAAAAGAATTGGACAAGGACCAGAGGTTTGGTTGTTCAACAGTTAACACTGCGGAATTGTCAAGTGAAGAGAAGTATATACCTTCGACGTCTCAAGCTCTACTGAGAATATCCATGAAGAATGGTCAGCCCCTTTTTACATTTGCTGTGGGCAACAATAGCAATATTCTCGCCGCCACAGTGAAGTACTCAACCGTCCCAAGACAAGGTGAATGCAGTTGTATCTATACTTTTTTCACATTTAGGGAGGTTAAAAAGAAGAATGGAAGTCGGACAAATAACACAGGAAAAAGCAAAGGTCCTGATTACGTTCGCCATGTCATTGCTCAAATGAAGCTTTCTGATTTGCACTATGATGATTCAAATAGCCAGAACCGTGTGGACTCTATCACAAAAGAGTTTGTTTTATTTTCTGTAAAACTAAAGCAAGGAGATACTCAGGTGGCTGACTATCAGCCAGATGACGAGCTTGCTGCTATAGTTGTCAAATCACCCAAAGCTATCAGTTATACGCATCAGCATGAATGTCAAGATCTATTACAGGTAACAGTGGTGCTTCCAAGCGGAGTTCATAGTCTTCCAAGTGATGGTGGACCTTCGTCGCTTATTGAGCGCTGGAAAACTGGTGGATCCTGTGATTGCGGAGGTTGGGATTTGGCTTGTAAGCTAAAAATTCTTGCCAACAATAATCAAACGTGCAGAAAATCAAGAACATCAGAAGCTTATTTTGCAGATCAGTATGAGCTTTTCTTCCAGGTATTTTCTCTTCCATTGATTTAAGTTGGTTATCCTTCCTAGCATATTGTAGATTAATCTTAGTTGGTTAGTGTGTAGATAATTGATTATTAATTTATTTAAGCTATGAATGCTAAATACAGGGGACTGAACAATGTCAAGATAACCGTCCTGTTTTCAATTTTTCCCATTTTGAACCTGGAGTATATTCAGTAGCTTTTGGTTCATCACTTTCACCCTTGCAAGCGTTCTCCATTTGCATTGCAATGGTGGATGGCAAACTCCCTTACGAACTTTCTGGATCAAGAAACTCCATCGAGGGAAAGAATCAGGCGGAATCTCTATTGGTTCAAACAGGTGAACTAAAGGGTCATGGTAAATCTGATGACATTCCTGCAAGTTACGCTGCCTATCCTCCTGTCTCTCCAGTTGGAAGGGTCTAA
Protein sequence

>MS.gene45539.t1

MSRKPVDGFKPENSSLSYADFHREVTKDEADKSLKGFSNQQRQTTCRRENDEDELVKHMKTLPGYLERGEKIPEKALNVGVLDWTSLERWQYSNKLVPPRSSRSSTSSSNTSTSIRTEDLCGNSRRGLNWSPSRQRIIPQSVQSHSMASTKQDHYIAVRSSGENAGNRLNLRDGNSSIDIQRKNVRTIDHLSRNHPTSILKGSDRKHLHPHIIKESGILSHDRTYEAASHAKLEMSTQDDQMEKKKGNLREQSSGVNAHDMLGKSKPIVLILPRDNPHKNNHCRAPDMQTTLDQKLGSHSQTRLFVNPNQPSCTYLNRNASHSCPLPDELRESHSQQESQPSSIDAESFKIPVSTFSEPSAPVPVRMGMSPCRSRKAEERKRTVAVSCSANAPPTEVDQKVTTEKPRSSSPFRRLSFSMGFTNKVSGCKEVAYVPHQSSVATHKPSSENVRGHASSNMPGSDKPGNAGKNRSSPLRRFLDPLVKPKAANCHNSMEVSQKDSENARGYVGSNISGNKSGAAGKSRSSPLRRLLDPLLKPKAANCHHSINLFQKESVVTNKSGRSGNGKCSTILPEKELDKDQRFGCSTVNTAELSSEEKYIPSTSQALLRISMKNGQPLFTFAVGNNSNILAATVKYSTVPRQGECSCIYTFFTFREVKKKNGSRTNNTGKSKGPDYVRHVIAQMKLSDLHYDDSNSQNRVDSITKEFVLFSVKLKQGDTQVADYQPDDELAAIVVKSPKAISYTHQHECQDLLQVTVVLPSGVHSLPSDGGPSSLIERWKTGGSCDCGGWDLACKLKILANNNQTCRKSRTSEAYFADQYELFFQGTEQCQDNRPVFNFSHFEPGVYSVAFGSSLSPLQAFSICIAMVDGKLPYELSGSRNSIEGKNQAESLLVQTGELKGHGKSDDIPASYAAYPPVSPVGRV