AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45545

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45545.t1 MTR_2g097950 97.166 494 14 0 1 494 13 506 0.0 986
MS.gene45545.t1 MTR_2g097950 90.283 494 13 1 1 494 13 471 0.0 898
MS.gene45545.t1 MTR_4g065040 71.855 469 131 1 5 472 1 469 0.0 673
MS.gene45545.t1 MTR_8g076480 56.667 480 201 2 8 483 9 485 0.0 580
MS.gene45545.t1 MTR_1g029840 47.390 479 249 1 3 481 11 486 6.47e-163 470
MS.gene45545.t1 MTR_1g029840 47.599 479 248 1 3 481 11 486 5.32e-161 465
MS.gene45545.t1 MTR_8g094600 47.660 470 243 1 12 481 73 539 1.52e-158 461
MS.gene45545.t1 MTR_3g088150 46.138 479 255 1 3 481 13 488 5.52e-158 458
MS.gene45545.t1 MTR_1222s0010 34.309 376 234 7 12 384 9 374 4.77e-65 224
MS.gene45545.t1 MTR_1314s0010 31.871 342 220 4 108 441 1 337 7.69e-57 192
MS.gene45545.t1 MTR_2g034160 26.608 451 300 10 23 453 96 535 2.77e-40 153
MS.gene45545.t1 MTR_2g067660 29.060 351 237 9 104 448 178 522 3.25e-40 152
MS.gene45545.t1 MTR_3g078490 26.804 485 293 13 1 454 77 530 4.46e-33 132
MS.gene45545.t1 MTR_4g106510 28.698 453 290 14 23 454 60 500 9.30e-33 130
MS.gene45545.t1 MTR_3g078550 27.101 476 303 15 1 454 17 470 1.57e-32 129
MS.gene45545.t1 MTR_3g078550 27.101 476 303 15 1 454 47 500 2.20e-32 129
MS.gene45545.t1 MTR_6g086300 29.817 436 260 18 39 456 94 501 1.61e-29 121
MS.gene45545.t1 MTR_6g086300 29.817 436 260 18 39 456 94 501 1.61e-29 121
MS.gene45545.t1 MTR_4g107040 27.033 455 299 14 2 440 97 534 3.59e-29 120
MS.gene45545.t1 MTR_8g064170 27.902 448 296 14 6 440 98 531 2.53e-28 118
MS.gene45545.t1 MTR_4g020720 47.692 130 62 3 175 301 116 242 5.15e-28 113
MS.gene45545.t1 MTR_8g083530 27.044 477 296 16 2 456 56 502 6.06e-28 117
MS.gene45545.t1 MTR_3g078170 26.339 448 303 13 6 440 99 532 1.43e-26 113
MS.gene45545.t1 MTR_6g086340 27.962 422 271 16 39 445 92 495 7.51e-26 110
MS.gene45545.t1 MTR_4g131180 26.966 445 281 15 2 423 44 467 2.28e-25 109
MS.gene45545.t1 MTR_1g014320 28.923 325 207 10 108 423 158 467 1.66e-24 106
MS.gene45545.t1 MTR_4g131180 26.824 425 268 14 2 403 44 448 1.99e-23 103
MS.gene45545.t1 MTR_8g064170 27.069 447 269 16 6 440 98 499 1.55e-21 97.8
MS.gene45545.t1 MTR_2g042330 26.062 353 240 9 105 447 152 493 3.65e-19 90.5
MS.gene45545.t1 MTR_3g078170 26.016 369 248 12 6 361 99 455 6.75e-19 89.7
MS.gene45545.t1 MTR_8g083520 26.230 427 239 17 39 445 6 376 7.90e-19 88.6
MS.gene45545.t1 MTR_8g083520 25.917 436 247 17 30 445 77 456 1.43e-18 88.6
MS.gene45545.t1 MTR_2g009750 27.097 310 204 10 105 401 147 447 1.90e-17 85.5
MS.gene45545.t1 MTR_2g009750 27.097 310 203 10 105 401 146 445 2.65e-17 85.1
MS.gene45545.t1 MTR_2g009750 27.097 310 203 10 105 401 147 446 2.85e-17 84.7
MS.gene45545.t1 MTR_4g093170 26.774 310 205 10 105 401 174 474 5.01e-17 84.3
MS.gene45545.t1 MTR_4g020710 52.778 72 33 1 295 365 14 85 5.71e-17 77.8
MS.gene45545.t1 MTR_8g083530 29.779 272 167 9 2 262 56 314 1.52e-15 78.6
MS.gene45545.t1 MTR_3g078490 28.155 309 172 9 1 286 47 328 2.09e-15 78.2
MS.gene45545.t1 MTR_3g078170 25.806 341 228 12 6 333 99 427 6.88e-15 77.0
MS.gene45545.t1 MTR_3g078170 25.806 341 228 12 6 333 99 427 8.07e-15 77.0
MS.gene45545.t1 MTR_1690s0010 28.500 200 133 8 108 302 146 340 3.95e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45545.t1 AT4G36250 53.002 483 227 0 1 483 1 483 0.0 566
MS.gene45545.t1 AT1G44170 48.408 471 240 1 12 482 16 483 7.13e-163 470
MS.gene45545.t1 AT1G44170 48.408 471 240 1 12 482 16 483 7.13e-163 470
MS.gene45545.t1 AT4G34240 49.682 471 234 1 12 482 64 531 2.22e-158 461
MS.gene45545.t1 AT4G34240 49.682 471 234 1 12 482 79 546 5.91e-158 460
MS.gene45545.t1 AT1G44170 50.000 418 206 1 65 482 6 420 1.43e-149 434
MS.gene45545.t1 AT4G34240 51.724 406 193 1 77 482 2 404 3.86e-142 414
MS.gene45545.t1 AT4G34240 49.524 315 156 1 12 326 79 390 1.85e-97 300
MS.gene45545.t1 AT3G66658 27.406 478 312 11 23 471 96 567 7.01e-47 172
MS.gene45545.t1 AT3G66658 27.477 444 296 9 23 446 96 533 4.52e-46 169
MS.gene45545.t1 AT1G79440 30.460 348 222 9 104 441 184 521 5.49e-41 154
MS.gene45545.t1 AT1G74920 29.680 438 284 14 30 454 69 495 4.86e-36 140
MS.gene45545.t1 AT1G74920 29.680 438 284 14 30 454 74 500 6.96e-36 139
MS.gene45545.t1 AT3G48170 26.737 475 303 16 6 454 45 500 4.96e-31 125
MS.gene45545.t1 AT1G23800 27.434 452 301 14 2 440 87 524 3.25e-30 124
MS.gene45545.t1 AT3G48000 26.991 452 303 13 2 440 91 528 1.55e-27 116
MS.gene45545.t1 AT3G24503 27.529 425 278 17 30 440 83 491 1.09e-25 110
MS.gene45545.t1 AT2G24270 28.923 325 207 10 108 423 198 507 6.13e-24 105
MS.gene45545.t1 AT2G24270 28.923 325 207 10 108 423 158 467 1.17e-23 104
MS.gene45545.t1 AT2G24270 28.923 325 207 10 108 423 158 467 1.17e-23 104
MS.gene45545.t1 AT2G24270 28.923 325 207 10 108 423 158 467 1.19e-23 104
MS.gene45545.t1 AT1G54100 26.571 350 236 9 108 447 154 492 1.24e-18 89.0
MS.gene45545.t1 AT1G54100 26.571 350 236 9 108 447 154 492 1.24e-18 89.0
MS.gene45545.t1 AT1G23800 27.673 318 206 12 2 307 87 392 5.60e-15 77.4
MS.gene45545.t1 AT2G14170 23.288 438 298 12 29 443 58 480 3.56e-12 68.9
MS.gene45545.t1 AT2G14170 23.288 438 298 12 29 443 167 589 4.18e-12 68.9
MS.gene45545.t1 AT2G14170 23.919 393 272 10 29 404 167 549 2.50e-11 66.6

Find 109 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTTATGTAGATTTA+TGG 0.118638 2.1:-6252802 MS.gene45545:intron
CACTGTTCTACCAAATTATT+TGG 0.132543 2.1:-6255301 MS.gene45545:CDS
TACTTATCTTACAGTGATTA+TGG 0.138309 2.1:+6252707 None:intergenic
CACTTGAAAGTAGTGCTATT+TGG 0.163353 2.1:+6255591 None:intergenic
TTCTCCTAGCCACAGCTTTA+TGG 0.164740 2.1:+6251810 None:intergenic
AAGGCCCTCAAGAAGGATTT+AGG 0.176467 2.1:-6255985 MS.gene45545:CDS
AGGAGTTGCTCTCCAATTTC+TGG 0.180506 2.1:+6255246 None:intergenic
CCATTATTGTCCAAATAATT+TGG 0.194174 2.1:+6255291 None:intergenic
GCAATGCTGTTGGATTCTTT+TGG 0.215212 2.1:+6254236 None:intergenic
TTGATTCACTTTCAACTTCT+TGG 0.229573 2.1:-6254993 MS.gene45545:CDS
ACTTGAAAGTAGTGCTATTT+GGG 0.262171 2.1:+6255592 None:intergenic
TGGAGAGAATCACAACTAAA+AGG 0.262228 2.1:-6256048 MS.gene45545:CDS
CCAAATTATTTGGACAATAA+TGG 0.270029 2.1:-6255291 MS.gene45545:CDS
TATGGAACCAACAATATTAC+TGG 0.285040 2.1:-6252784 MS.gene45545:CDS
GCATAAATTGCTAGAGGTTT+AGG 0.288414 2.1:+6252523 None:intergenic
GATGGCTGTGAAACGAATTT+TGG 0.298929 2.1:-6254483 MS.gene45545:CDS
GTGTCCTTGGAGCCATTAAT+TGG 0.298989 2.1:-6255396 MS.gene45545:CDS
ATTGAAGGTGGACCAGAAAT+TGG 0.299642 2.1:-6255258 MS.gene45545:CDS
GTTAAAGAAATCCATTGATT+TGG 0.305202 2.1:-6255815 MS.gene45545:CDS
AAGAACATGAGAAAGTATTA+TGG 0.305368 2.1:-6256096 MS.gene45545:CDS
GCAGCTATGGCTCCAATTAA+TGG 0.306017 2.1:+6255384 None:intergenic
ACACCTATAACTTTGGAGTT+AGG 0.312877 2.1:-6255036 MS.gene45545:CDS
GAGGAGACTCTTGATTCTAT+TGG 0.336102 2.1:+6254190 None:intergenic
TGTAAGCTTCTTCAAGTAGT+TGG 0.339552 2.1:+6251735 None:intergenic
TGATTCACTTTCAACTTCTT+GGG 0.343615 2.1:-6254992 MS.gene45545:CDS
GGAGTTCTCAGTGGAAGCTT+TGG 0.372513 2.1:-6256130 MS.gene45545:CDS
CACCTATAACTTTGGAGTTA+GGG 0.379194 2.1:-6255035 MS.gene45545:CDS
TTCAAAACGTTCATTATATG+AGG 0.382788 2.1:-6251666 MS.gene45545:CDS
ACCACCGATTCTTTGACATT+AGG 0.390930 2.1:+6254161 None:intergenic
ACTTATCTTACAGTGATTAT+GGG 0.400023 2.1:+6252708 None:intergenic
AGGCCCTCAAGAAGGATTTA+GGG 0.400687 2.1:-6255984 MS.gene45545:CDS
GGACTTTATTGCCAAATCAA+TGG 0.403173 2.1:+6255804 None:intergenic
AGAACATGAGAAAGTATTAT+GGG 0.405722 2.1:-6256095 MS.gene45545:CDS
GGAGTTGGTGAATGTGGATT+TGG 0.413532 2.1:-6251872 MS.gene45545:CDS
GCATCTCACACCTATAACTT+TGG 0.417242 2.1:-6255043 MS.gene45545:CDS
ACCATCCCATTTGGAGGAGT+TGG 0.443845 2.1:-6251887 MS.gene45545:CDS
ATAGCGGATACCATCCCATT+TGG 0.449228 2.1:-6251896 MS.gene45545:CDS
AACAATCCTTGCAATGCTGT+TGG 0.454731 2.1:+6254226 None:intergenic
ATTTAATGATGCAATTCTAC+AGG 0.457393 2.1:-6252437 MS.gene45545:intron
GAAATTGTTGCTGAGCCTCT+TGG 0.457989 2.1:-6255566 MS.gene45545:CDS
TTTGGTTCAGGTTTCCTCCA+TGG 0.459950 2.1:-6251772 MS.gene45545:CDS
CTTCCCTAAATCCTTCTTGA+GGG 0.460635 2.1:+6255981 None:intergenic
CATTCACCAACTCCTCCAAA+TGG 0.461138 2.1:+6251881 None:intergenic
ATCATGACAGAAGAAATCTT+TGG 0.467373 2.1:-6252741 MS.gene45545:CDS
CAAAACACTGCAGAGAAGAT+TGG 0.468898 2.1:-6252488 MS.gene45545:CDS
TTGGTATCTGAAACATCATC+CGG 0.480961 2.1:-6252469 MS.gene45545:CDS
TGGAACTTGTTAAGATTCCA+TGG 0.484735 2.1:+6251755 None:intergenic
GCTTACAATTTAAACTACAT+TGG 0.487149 2.1:-6251719 MS.gene45545:CDS
TAGGTGGAGTTAATGAAGGA+AGG 0.488749 2.1:-6254284 MS.gene45545:CDS
GCAAAGTATGGGGCTTGTGC+AGG 0.494839 2.1:-6254458 MS.gene45545:CDS
TGCAACATTTCCAGCAGCTA+TGG 0.497942 2.1:+6255371 None:intergenic
AATTCCATGATGAGATTATG+AGG 0.500503 2.1:+6255537 None:intergenic
AAAATGGATGGCTGGTAAAG+AGG 0.500707 2.1:-6255776 MS.gene45545:intron
TCTTTAGGTGGAGTTAATGA+AGG 0.502645 2.1:-6254288 MS.gene45545:intron
AATGGCATTAAGATCATTGA+AGG 0.505160 2.1:-6255273 MS.gene45545:CDS
GGAGAGAATCACAACTAAAA+GGG 0.505316 2.1:-6256047 MS.gene45545:CDS
GCTTCCCTAAATCCTTCTTG+AGG 0.505953 2.1:+6255980 None:intergenic
AGGTGGAGTTAATGAAGGAA+GGG 0.506548 2.1:-6254283 MS.gene45545:CDS
TGTGGATTTGGCAAGTATCA+TGG 0.509305 2.1:-6251860 MS.gene45545:CDS
CTAGAAGAGAAGAAGAAGTA+GGG 0.517439 2.1:+6255325 None:intergenic
ATGAGAAAGTATTATGGGAG+TGG 0.517718 2.1:-6256090 MS.gene45545:CDS
GCTAGAAGAGAAGAAGAAGT+AGG 0.519054 2.1:+6255324 None:intergenic
TGAACCTAATGTCAAAGAAT+CGG 0.526059 2.1:-6254165 MS.gene45545:CDS
GAAAGTGAATCAACCAGTGC+TGG 0.531970 2.1:+6255003 None:intergenic
AAATGAGGAAGAGATCTTGA+AGG 0.532562 2.1:-6256004 MS.gene45545:CDS
GATTGTTATGTCTGCAGCAG+TGG 0.533250 2.1:-6255067 MS.gene45545:CDS
ATTCACCAACTCCTCCAAAT+GGG 0.535804 2.1:+6251882 None:intergenic
TTAATTGGAGCCATAGCTGC+TGG 0.536986 2.1:-6255381 MS.gene45545:CDS
GTGGATTTGGCAAGTATCAT+GGG 0.538798 2.1:-6251859 MS.gene45545:CDS
ATCATTAAATACAATGCTCC+CGG 0.543496 2.1:+6252450 None:intergenic
TTTGGAGGAGTTGGTGAATG+TGG 0.544032 2.1:-6251878 MS.gene45545:CDS
TAACTTTGTCAAAGAAAATG+AGG 0.553225 2.1:-6256019 MS.gene45545:CDS
ACCTATAACTTTGGAGTTAG+GGG 0.556675 2.1:-6255034 MS.gene45545:CDS
GCGGATACCATCCCATTTGG+AGG 0.558921 2.1:-6251893 MS.gene45545:CDS
TACAGTGATTATGGGAAGCA+CGG 0.561570 2.1:+6252716 None:intergenic
GTCATGATTGCTGATTCAAG+TGG 0.562929 2.1:+6252756 None:intergenic
AGTCCTAAAACCTTCAGAGT+TGG 0.563574 2.1:-6255349 MS.gene45545:CDS
GAAGTAGGGGCCAACTCTGA+AGG 0.570056 2.1:+6255339 None:intergenic
TAGTCCTCATAATCTCATCA+TGG 0.574613 2.1:-6255541 MS.gene45545:CDS
GGCTCCAATTAATGGCTCCA+AGG 0.575676 2.1:+6255392 None:intergenic
GTGAAAGCATAAATTGCTAG+AGG 0.575786 2.1:+6252517 None:intergenic
GATCTTGAAGGCCCTCAAGA+AGG 0.580261 2.1:-6255992 MS.gene45545:CDS
ATATTAGGAAGTGCACGAGT+GGG 0.582326 2.1:-6255093 MS.gene45545:intron
TTTAGGGAAGCATCATGTTG+AGG 0.599307 2.1:-6255968 MS.gene45545:CDS
TATATTAGGAAGTGCACGAG+TGG 0.599974 2.1:-6255094 MS.gene45545:intron
CCTATAACTTTGGAGTTAGG+GGG 0.604096 2.1:-6255033 MS.gene45545:CDS
AAAGAGCTTCAGTTCCACAT+TGG 0.608853 2.1:-6254399 MS.gene45545:intron
ACCAACTCCTCCAAATGGGA+TGG 0.608963 2.1:+6251886 None:intergenic
TCATGATTGCTGATTCAAGT+GGG 0.615088 2.1:+6252757 None:intergenic
GGCATTAAGATCATTGAAGG+TGG 0.617998 2.1:-6255270 MS.gene45545:CDS
ACAGTGATTATGGGAAGCAC+GGG 0.618850 2.1:+6252717 None:intergenic
ACCTAATGTCAAAGAATCGG+TGG 0.620390 2.1:-6254162 MS.gene45545:CDS
AAGAATCCAACAGCATTGCA+AGG 0.622783 2.1:-6254232 MS.gene45545:CDS
TAGAAGAGAAGAAGAAGTAG+GGG 0.625377 2.1:+6255326 None:intergenic
TAGGAAGTGCACGAGTGGGG+AGG 0.625912 2.1:-6255089 MS.gene45545:CDS
GTCACCATAAAGCTGTGGCT+AGG 0.633443 2.1:-6251814 MS.gene45545:CDS
TGGTATCTGAAACATCATCC+GGG 0.645652 2.1:-6252468 MS.gene45545:CDS
TATTAGGAAGTGCACGAGTG+GGG 0.646738 2.1:-6255092 MS.gene45545:intron
CAGGTGGAGAAGATTGAAGA+CGG 0.650633 2.1:-6252568 MS.gene45545:CDS
TTCAACTTCTTGGGACAGAG+AGG 0.650826 2.1:-6254983 MS.gene45545:intron
CAAATAATTTGGTAGAACAG+TGG 0.655707 2.1:+6255302 None:intergenic
ATGATTGCTGATTCAAGTGG+GGG 0.665274 2.1:+6252759 None:intergenic
CTTGAAAGTAGTGCTATTTG+GGG 0.666143 2.1:+6255593 None:intergenic
TGGTAACATGGAGTTCTCAG+TGG 0.677211 2.1:-6256139 None:intergenic
CATGATTGCTGATTCAAGTG+GGG 0.687119 2.1:+6252758 None:intergenic
CTTTGACATTAGGTTCACTG+AGG 0.691733 2.1:+6254171 None:intergenic
ATTCAGTCACCATAAAGCTG+TGG 0.694399 2.1:-6251819 MS.gene45545:CDS
ATTATGAGGACTAGACCAAG+AGG 0.704548 2.1:+6255551 None:intergenic
AACTTGTTAAGATTCCATGG+AGG 0.758325 2.1:+6251758 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAATAAATAAAAT+CGG + chr2.1:6253249-6253268 None:intergenic 0.0%
!! TAAAAAAATAAATAAAATCG+GGG + chr2.1:6253247-6253266 None:intergenic 10.0%
!! TCAAAAAAACATAAAAAAAA+TGG + chr2.1:6252632-6252651 None:intergenic 10.0%
!! TTTCAATAAACTAAATATAA+TGG + chr2.1:6252096-6252115 None:intergenic 10.0%
!!! AGTTTTATTAATATAAACTA+AGG - chr2.1:6253097-6253116 MS.gene45545:intron 10.0%
!!! TTAACTACTTTTTTTTTAAA+GGG + chr2.1:6254599-6254618 None:intergenic 10.0%
!! ATTCCCAAATAAATATTATT+TGG - chr2.1:6253883-6253902 MS.gene45545:intron 15.0%
!! ATTTAAATGATTGAATTAAC+CGG - chr2.1:6253841-6253860 MS.gene45545:intron 15.0%
!! CAAAATCAAGAAAAAATTAA+AGG + chr2.1:6253985-6254004 None:intergenic 15.0%
!! CCTATATTAATAAAACTTAA+TGG + chr2.1:6252957-6252976 None:intergenic 15.0%
!! GCAAATTATATATATACATA+TGG + chr2.1:6251942-6251961 None:intergenic 15.0%
!! TGTCCAAATAATATTTATTT+GGG + chr2.1:6253889-6253908 None:intergenic 15.0%
!!! AATAGTCTTAAAAAAAAACT+TGG + chr2.1:6255671-6255690 None:intergenic 15.0%
!!! AATTTATTCAAAGGTATTTT+AGG - chr2.1:6254728-6254747 MS.gene45545:intron 15.0%
!!! ATAAGGTATTAAAAAAAACA+AGG + chr2.1:6254324-6254343 None:intergenic 15.0%
!!! ATGATTTTTCTTTCTTTTAA+CGG - chr2.1:6255607-6255626 MS.gene45545:intron 15.0%
!!! ATGTATATTTCTGTTTAATT+TGG - chr2.1:6251902-6251921 MS.gene45545:CDS 15.0%
!!! CCATTAAGTTTTATTAATAT+AGG - chr2.1:6252954-6252973 MS.gene45545:intron 15.0%
!!! GTTAACTACTTTTTTTTTAA+AGG + chr2.1:6254600-6254619 None:intergenic 15.0%
!!! TATGTATATATATAATTTGC+AGG - chr2.1:6251942-6251961 MS.gene45545:intron 15.0%
!!! TTTAATTTCATGTAAAAGTA+TGG + chr2.1:6252134-6252153 None:intergenic 15.0%
!! AAGGGATTAAAAAAATGTTT+GGG - chr2.1:6253522-6253541 MS.gene45545:intron 20.0%
!! ATAAAAAAAATGGAAATGAG+AGG + chr2.1:6252622-6252641 None:intergenic 20.0%
!! ATAATCATGTAAGGAAAAAT+TGG + chr2.1:6254938-6254957 None:intergenic 20.0%
!! ATCATAAAGATAATCATGTA+AGG + chr2.1:6254947-6254966 None:intergenic 20.0%
!! CAAAAACTCTATAATGTTTA+TGG + chr2.1:6254694-6254713 None:intergenic 20.0%
!! CAAACCCAAATAAAAATATT+TGG + chr2.1:6254017-6254036 None:intergenic 20.0%
!! GATTAAAAAGGACTAAAATA+AGG + chr2.1:6255123-6255142 None:intergenic 20.0%
!! GTGTCCAAATAATATTTATT+TGG + chr2.1:6253890-6253909 None:intergenic 20.0%
!! TAAAAAAAATGGAAATGAGA+GGG + chr2.1:6252621-6252640 None:intergenic 20.0%
!! TAAACAATTGAAACTAAACT+TGG + chr2.1:6255195-6255214 None:intergenic 20.0%
!! TAAATTGAATCATCTATAAC+CGG - chr2.1:6255539-6255558 MS.gene45545:CDS 20.0%
!! TGAAATCTTATGTAGATTTA+TGG - chr2.1:6254985-6255004 MS.gene45545:CDS 20.0%
!! TTGTAATGATCCAATATATT+AGG - chr2.1:6252679-6252698 MS.gene45545:intron 20.0%
!!! AAAGAGTTTAAATCTTTTCT+AGG - chr2.1:6253168-6253187 MS.gene45545:intron 20.0%
!!! AGTTGTTTTTTCTTTTTCTT+TGG + chr2.1:6254794-6254813 None:intergenic 20.0%
!!! ATGTTTATTATTTGAAGTCA+AGG + chr2.1:6254232-6254251 None:intergenic 20.0%
!!! CTGTTAAGTTGAAAATAATA+AGG + chr2.1:6252165-6252184 None:intergenic 20.0%
!!! CTTATTATTTTCAACTTAAC+AGG - chr2.1:6252163-6252182 MS.gene45545:intron 20.0%
!!! GCTTTTGAAAACATTTTTTT+AGG + chr2.1:6254896-6254915 None:intergenic 20.0%
!!! GTGACCAAATATTTTTATTT+GGG - chr2.1:6254010-6254029 MS.gene45545:intron 20.0%
!!! TATATATATAATTTGCAGGT+TGG - chr2.1:6251946-6251965 MS.gene45545:intron 20.0%
!!! TGTGACCAAATATTTTTATT+TGG - chr2.1:6254009-6254028 MS.gene45545:intron 20.0%
!!! TTGAAGAATACTGATTAAAA+AGG + chr2.1:6255135-6255154 None:intergenic 20.0%
!!! TTTTTCCTCTTAAGAATTTT+AGG - chr2.1:6254176-6254195 MS.gene45545:CDS 20.0%
!!! TTTTTTTTGTACATAGATCT+CGG + chr2.1:6254853-6254872 None:intergenic 20.0%
!!! TTTTTTTTTGCAGTATATAG+CGG - chr2.1:6255875-6255894 MS.gene45545:intron 20.0%
! AACTAAACTTGGTTAACATT+TGG + chr2.1:6255184-6255203 None:intergenic 25.0%
! AAGTTGAAAATAATAAGGCA+CGG + chr2.1:6252160-6252179 None:intergenic 25.0%
! ACCTAAAGAGAATAAAACAA+AGG + chr2.1:6253488-6253507 None:intergenic 25.0%
! ACTTATCTTACAGTGATTAT+GGG + chr2.1:6255082-6255101 None:intergenic 25.0%
! AGGGATTAAAAAAATGTTTG+GGG - chr2.1:6253523-6253542 MS.gene45545:intron 25.0%
! AGTTTCAATTGTTTATTTGC+AGG - chr2.1:6255200-6255219 MS.gene45545:intron 25.0%
! ATTATCTTTCATATGCCAAT+TGG + chr2.1:6255847-6255866 None:intergenic 25.0%
! ATTTAATGATGCAATTCTAC+AGG - chr2.1:6255350-6255369 MS.gene45545:CDS 25.0%
! ATTTCTGTTGAACAATAAGA+TGG - chr2.1:6253286-6253305 MS.gene45545:intron 25.0%
! CAAAAGTAGCAAATTAATGA+AGG - chr2.1:6252898-6252917 MS.gene45545:intron 25.0%
! CAATAAAGTCCTTCAAAAAA+TGG - chr2.1:6251995-6252014 MS.gene45545:intron 25.0%
! CATAAAAATACCGAATTGTT+AGG - chr2.1:6252985-6253004 MS.gene45545:intron 25.0%
! CATAGTAGTGAAAATATGTT+AGG + chr2.1:6255422-6255441 None:intergenic 25.0%
! CCAAATTATTTGGACAATAA+TGG - chr2.1:6252496-6252515 MS.gene45545:CDS 25.0%
! CCATTATTGTCCAAATAATT+TGG + chr2.1:6252499-6252518 None:intergenic 25.0%
! GAAGGGATTAAAAAAATGTT+TGG - chr2.1:6253521-6253540 MS.gene45545:intron 25.0%
! GCTTACAATTTAAACTACAT+TGG - chr2.1:6256068-6256087 MS.gene45545:CDS 25.0%
! GGTGTTCTTGATAAAATTAA+CGG + chr2.1:6255826-6255845 None:intergenic 25.0%
! GTAATAGAAAGAAGAAAGAA+GGG + chr2.1:6254522-6254541 None:intergenic 25.0%
! TAACTTTGTCAAAGAAAATG+AGG - chr2.1:6251768-6251787 MS.gene45545:CDS 25.0%
! TAATAGAAAGAAGAAAGAAG+GGG + chr2.1:6254521-6254540 None:intergenic 25.0%
! TACTTATCTTACAGTGATTA+TGG + chr2.1:6255083-6255102 None:intergenic 25.0%
! TAGGTAAACCAAAATGATAA+TGG + chr2.1:6253072-6253091 None:intergenic 25.0%
! TCTAACCGTATATAAATAGT+CGG + chr2.1:6255578-6255597 None:intergenic 25.0%
! TGATTGCTTATATATGAAAC+AGG + chr2.1:6254563-6254582 None:intergenic 25.0%
! TGTAATAGAAAGAAGAAAGA+AGG + chr2.1:6254523-6254542 None:intergenic 25.0%
! TTCAAAACGTTCATTATATG+AGG - chr2.1:6256121-6256140 MS.gene45545:CDS 25.0%
!! ATTTTATCAAGAACACCAAT+TGG - chr2.1:6255829-6255848 MS.gene45545:intron 25.0%
!! GGAAAATTGTACATTTTACA+AGG + chr2.1:6254830-6254849 None:intergenic 25.0%
!! GTTAAAGAAATCCATTGATT+TGG - chr2.1:6251972-6251991 MS.gene45545:intron 25.0%
!! TCGACGAATTTTTAAATTCA+CGG - chr2.1:6253711-6253730 MS.gene45545:intron 25.0%
!! TTTTCACAATAAGATAGTGA+GGG + chr2.1:6255746-6255765 None:intergenic 25.0%
!!! AAGAACATGAGAAAGTATTA+TGG - chr2.1:6251691-6251710 MS.gene45545:CDS 25.0%
!!! AGAACATGAGAAAGTATTAT+GGG - chr2.1:6251692-6251711 MS.gene45545:CDS 25.0%
!!! TCCTTTGTTTTATTCTCTTT+AGG - chr2.1:6253484-6253503 MS.gene45545:intron 25.0%
!!! TTTGTTTTATTCTCTTTAGG+TGG - chr2.1:6253487-6253506 MS.gene45545:intron 25.0%
!!! TTTTTTTGTACATAGATCTC+GGG + chr2.1:6254852-6254871 None:intergenic 25.0%
AAAGTCCTTCAAAAAATGGA+TGG - chr2.1:6251999-6252018 MS.gene45545:intron 30.0%
AATGGCATTAAGATCATTGA+AGG - chr2.1:6252514-6252533 MS.gene45545:CDS 30.0%
AATTCCATGATGAGATTATG+AGG + chr2.1:6252253-6252272 None:intergenic 30.0%
ACCATCCTAAAATTCTTAAG+AGG + chr2.1:6254184-6254203 None:intergenic 30.0%
AGAGGGTAAAAGAAATAGTA+AGG + chr2.1:6252604-6252623 None:intergenic 30.0%
AGCAACTCCTACATAAAAAA+TGG - chr2.1:6252554-6252573 MS.gene45545:CDS 30.0%
AGGAATGATAGCATTAACTA+TGG - chr2.1:6254748-6254767 MS.gene45545:intron 30.0%
ATCATGACAGAAGAAATCTT+TGG - chr2.1:6255046-6255065 MS.gene45545:CDS 30.0%
ATCATTAAATACAATGCTCC+CGG + chr2.1:6255340-6255359 None:intergenic 30.0%
ATGTACCTTCTATTGTAGAA+AGG - chr2.1:6252856-6252875 MS.gene45545:intron 30.0%
ATTGCTCATTTAGTCATTCT+TGG + chr2.1:6254072-6254091 None:intergenic 30.0%
CAAATAATTTGGTAGAACAG+TGG + chr2.1:6252488-6252507 None:intergenic 30.0%
CAAGGTGAAAACATGAAATA+CGG + chr2.1:6254214-6254233 None:intergenic 30.0%
CACTGTTCTACCAAATTATT+TGG - chr2.1:6252486-6252505 MS.gene45545:CDS 30.0%
GCAACTCCTACATAAAAAAT+GGG - chr2.1:6252555-6252574 MS.gene45545:CDS 30.0%
GTTCATTTAATCTTGTCACA+TGG - chr2.1:6252832-6252851 MS.gene45545:intron 30.0%
TATGGAACCAACAATATTAC+TGG - chr2.1:6255003-6255022 MS.gene45545:CDS 30.0%
TGAACCTAATGTCAAAGAAT+CGG - chr2.1:6253622-6253641 MS.gene45545:intron 30.0%
TGATTCACTTTCAACTTCTT+GGG - chr2.1:6252795-6252814 MS.gene45545:intron 30.0%
TGCTTATATATGAAACAGGA+GGG + chr2.1:6254559-6254578 None:intergenic 30.0%
TGTAGCCGACTATTTATATA+CGG - chr2.1:6255570-6255589 MS.gene45545:CDS 30.0%
TTCAATTGTTTATTTGCAGG+TGG - chr2.1:6255203-6255222 MS.gene45545:intron 30.0%
TTGATTCACTTTCAACTTCT+TGG - chr2.1:6252794-6252813 MS.gene45545:intron 30.0%
TTGCTTATATATGAAACAGG+AGG + chr2.1:6254560-6254579 None:intergenic 30.0%
! ATACTTCCATGACATAGTTT+TGG + chr2.1:6254496-6254515 None:intergenic 30.0%
! CTTTTCACAATAAGATAGTG+AGG + chr2.1:6255747-6255766 None:intergenic 30.0%
! TCATCATGGAATTTTCCATT+TGG - chr2.1:6252260-6252279 MS.gene45545:intron 30.0%
! TCCATTTGGTGAGTAAAATA+TGG - chr2.1:6252274-6252293 MS.gene45545:intron 30.0%
!! ACCAAAATGATAATGGTCAT+CGG + chr2.1:6253065-6253084 None:intergenic 30.0%
!! ACTTGAAAGTAGTGCTATTT+GGG + chr2.1:6252198-6252217 None:intergenic 30.0%
!! AGGAAAAATTGGTCTCTTTT+AGG + chr2.1:6254927-6254946 None:intergenic 30.0%
!! AGTATTCTTCAAAAGTGTCA+AGG - chr2.1:6255143-6255162 MS.gene45545:intron 30.0%
!! GAAAAACAAAAGAAGCATCA+TGG - chr2.1:6251719-6251738 MS.gene45545:CDS 30.0%
!! TCCTCTTAAGAATTTTAGGA+TGG - chr2.1:6254180-6254199 MS.gene45545:CDS 30.0%
!! TTTCTCTTGGTTTTTGTAAC+AGG - chr2.1:6252367-6252386 MS.gene45545:intron 30.0%
!!! GAAGTTACTACACTGATTTT+TGG - chr2.1:6255997-6256016 MS.gene45545:CDS 30.0%
!!! GGAATACTTCTTGTTTTACT+CGG - chr2.1:6256089-6256108 MS.gene45545:CDS 30.0%
!!! TCTTGTCCCATTTTTTATGT+AGG + chr2.1:6252564-6252583 None:intergenic 30.0%
!!! TTTTTTGTACATAGATCTCG+GGG + chr2.1:6254851-6254870 None:intergenic 30.0%
AAATGAGGAAGAGATCTTGA+AGG - chr2.1:6251783-6251802 MS.gene45545:CDS 35.0%
CATTGCCTTTCTACAATAGA+AGG + chr2.1:6252864-6252883 None:intergenic 35.0%
CTAGAAGAGAAGAAGAAGTA+GGG + chr2.1:6252465-6252484 None:intergenic 35.0%
CTCCTAACATATAGTCATTG+TGG + chr2.1:6253126-6253145 None:intergenic 35.0%
CTTGCAAAACAAAACCTTAC+TGG + chr2.1:6255448-6255467 None:intergenic 35.0%
GAAGGCAAGCTATAGAAATA+AGG + chr2.1:6254341-6254360 None:intergenic 35.0%
GCATAAATTGCTAGAGGTTT+AGG + chr2.1:6255267-6255286 None:intergenic 35.0%
GGACTTTATTGCCAAATCAA+TGG + chr2.1:6251986-6252005 None:intergenic 35.0%
GGAGAGAATCACAACTAAAA+GGG - chr2.1:6251740-6251759 MS.gene45545:CDS 35.0%
GTCCACAATGACTATATGTT+AGG - chr2.1:6253121-6253140 MS.gene45545:intron 35.0%
GTTCAAAGTTGTGTTTCTCT+TGG - chr2.1:6252354-6252373 MS.gene45545:intron 35.0%
TAGAAGAGAAGAAGAAGTAG+GGG + chr2.1:6252464-6252483 None:intergenic 35.0%
TAGGACATTCGCAAAATGAT+CGG - chr2.1:6253187-6253206 MS.gene45545:intron 35.0%
TAGTCCTCATAATCTCATCA+TGG - chr2.1:6252246-6252265 MS.gene45545:intron 35.0%
TCACTACTATGAAACCAGTA+AGG - chr2.1:6255431-6255450 MS.gene45545:intron 35.0%
TCGTGCACTTCCTAATATAT+TGG + chr2.1:6252692-6252711 None:intergenic 35.0%
TCTATTGTAGAAAGGCAATG+TGG - chr2.1:6252864-6252883 MS.gene45545:intron 35.0%
TCTTTAGGTGGAGTTAATGA+AGG - chr2.1:6253499-6253518 MS.gene45545:intron 35.0%
TGGAGAGAATCACAACTAAA+AGG - chr2.1:6251739-6251758 MS.gene45545:CDS 35.0%
TGTAAGCTTCTTCAAGTAGT+TGG + chr2.1:6256055-6256074 None:intergenic 35.0%
TGTTTATGGAACAAGTTCTC+AGG + chr2.1:6254680-6254699 None:intergenic 35.0%
TTAACCGGAAAAGTCTTTCA+TGG - chr2.1:6253856-6253875 MS.gene45545:intron 35.0%
TTCTTGGATAAGTCAATTCG+AGG + chr2.1:6254056-6254075 None:intergenic 35.0%
! AACTGAAGCTCTTTTCTACA+AGG + chr2.1:6253382-6253401 None:intergenic 35.0%
! ATGAGTTGGGATTCAATCAA+CGG + chr2.1:6253024-6253043 None:intergenic 35.0%
! CAATGCTGTTGGATTCTTTT+GGG + chr2.1:6253553-6253572 None:intergenic 35.0%
! CACTTGAAAGTAGTGCTATT+TGG + chr2.1:6252199-6252218 None:intergenic 35.0%
! GCCATATTTTACTCACCAAA+TGG + chr2.1:6252278-6252297 None:intergenic 35.0%
! GTGAAAGCATAAATTGCTAG+AGG + chr2.1:6255273-6255292 None:intergenic 35.0%
! TCCGATGACCATTATCATTT+TGG - chr2.1:6253061-6253080 MS.gene45545:intron 35.0%
! TGGGACAAGATATTTTTCAC+TGG - chr2.1:6252574-6252593 MS.gene45545:intron 35.0%
! TTGGTATCTGAAACATCATC+CGG - chr2.1:6255318-6255337 MS.gene45545:CDS 35.0%
!! AACTTGTTAAGATTCCATGG+AGG + chr2.1:6256032-6256051 None:intergenic 35.0%
!! AATTTTGGTGGCAAAGTATG+GGG - chr2.1:6253319-6253338 MS.gene45545:intron 35.0%
!! ACACCTATAACTTTGGAGTT+AGG - chr2.1:6252751-6252770 MS.gene45545:CDS 35.0%
!! ACCTATAACTTTGGAGTTAG+GGG - chr2.1:6252753-6252772 MS.gene45545:CDS 35.0%
!! ATGAGAAAGTATTATGGGAG+TGG - chr2.1:6251697-6251716 MS.gene45545:CDS 35.0%
!! CACCTATAACTTTGGAGTTA+GGG - chr2.1:6252752-6252771 MS.gene45545:CDS 35.0%
!! CTTGAAAGTAGTGCTATTTG+GGG + chr2.1:6252197-6252216 None:intergenic 35.0%
!! GAATTTTGGTGGCAAAGTAT+GGG - chr2.1:6253318-6253337 MS.gene45545:intron 35.0%
!! TCATGATTGCTGATTCAAGT+GGG + chr2.1:6255033-6255052 None:intergenic 35.0%
!! TGGAACTTGTTAAGATTCCA+TGG + chr2.1:6256035-6256054 None:intergenic 35.0%
!!! ACTACACTGATTTTTGGTTC+AGG - chr2.1:6256003-6256022 MS.gene45545:CDS 35.0%
!!! TGGTCTCTTTTAGGTTCATT+TGG + chr2.1:6254918-6254937 None:intergenic 35.0%
!!! TTTCCTGCTTTTTACCAATG+TGG + chr2.1:6253405-6253424 None:intergenic 35.0%
AAAATGGATGGCTGGTAAAG+AGG - chr2.1:6252011-6252030 MS.gene45545:intron 40.0%
AAAGAGCTTCAGTTCCACAT+TGG - chr2.1:6253388-6253407 MS.gene45545:intron 40.0%
AACAATCCTTGCAATGCTGT+TGG + chr2.1:6253564-6253583 None:intergenic 40.0%
AAGAATCCAACAGCATTGCA+AGG - chr2.1:6253555-6253574 MS.gene45545:intron 40.0%
AAGTCAATTCGAGGCACAAT+TGG + chr2.1:6254047-6254066 None:intergenic 40.0%
ACCTAATGTCAAAGAATCGG+TGG - chr2.1:6253625-6253644 MS.gene45545:intron 40.0%
AGCTTGAGAGAGAAGTTAAG+TGG + chr2.1:6255482-6255501 None:intergenic 40.0%
AGGTGGAGTTAATGAAGGAA+GGG - chr2.1:6253504-6253523 MS.gene45545:intron 40.0%
AGTCCTAAAACCTTCAGAGT+TGG - chr2.1:6252438-6252457 MS.gene45545:CDS 40.0%
AGTCGGCTACATCATAAAAC+CGG + chr2.1:6255561-6255580 None:intergenic 40.0%
ATGGCACCAAAACTATGTCA+TGG - chr2.1:6254487-6254506 MS.gene45545:intron 40.0%
ATTATGAGGACTAGACCAAG+AGG + chr2.1:6252239-6252258 None:intergenic 40.0%
ATTCACCAACTCCTCCAAAT+GGG + chr2.1:6255908-6255927 None:intergenic 40.0%
ATTCAGTCACCATAAAGCTG+TGG - chr2.1:6255968-6255987 MS.gene45545:CDS 40.0%
ATTGAAGGTGGACCAGAAAT+TGG - chr2.1:6252529-6252548 MS.gene45545:CDS 40.0%
CAAAACACTGCAGAGAAGAT+TGG - chr2.1:6255299-6255318 MS.gene45545:CDS 40.0%
CACAGACTAGTGAATGAGTT+GGG + chr2.1:6253037-6253056 None:intergenic 40.0%
CTTCCCTAAATCCTTCTTGA+GGG + chr2.1:6251809-6251828 None:intergenic 40.0%
CTTCTTTCTGAGTAGCACTT+TGG - chr2.1:6254357-6254376 MS.gene45545:intron 40.0%
CTTTGACATTAGGTTCACTG+AGG + chr2.1:6253619-6253638 None:intergenic 40.0%
GAGGAGACTCTTGATTCTAT+TGG + chr2.1:6253600-6253619 None:intergenic 40.0%
GCATCTCACACCTATAACTT+TGG - chr2.1:6252744-6252763 MS.gene45545:CDS 40.0%
GCTAGAAGAGAAGAAGAAGT+AGG + chr2.1:6252466-6252485 None:intergenic 40.0%
GGCATTAAGATCATTGAAGG+TGG - chr2.1:6252517-6252536 MS.gene45545:CDS 40.0%
GTGGATTTGGCAAGTATCAT+GGG - chr2.1:6255928-6255947 MS.gene45545:intron 40.0%
GTTCCACATTGGTAAAAAGC+AGG - chr2.1:6253399-6253418 MS.gene45545:intron 40.0%
TACAGTGATTATGGGAAGCA+CGG + chr2.1:6255074-6255093 None:intergenic 40.0%
TAGGTGGAGTTAATGAAGGA+AGG - chr2.1:6253503-6253522 MS.gene45545:intron 40.0%
TATGGAACAAGTTCTCAGGA+GGG + chr2.1:6254676-6254695 None:intergenic 40.0%
TCACAGACTAGTGAATGAGT+TGG + chr2.1:6253038-6253057 None:intergenic 40.0%
TCCTTCAAAAAATGGATGGC+TGG - chr2.1:6252003-6252022 MS.gene45545:intron 40.0%
TGGGATTCAATCAACGGTTA+CGG + chr2.1:6253018-6253037 None:intergenic 40.0%
TGTAGAAAGGCAATGTGGAA+TGG - chr2.1:6252869-6252888 MS.gene45545:intron 40.0%
TGTGGATTTGGCAAGTATCA+TGG - chr2.1:6255927-6255946 MS.gene45545:intron 40.0%
TTATGGAACAAGTTCTCAGG+AGG + chr2.1:6254677-6254696 None:intergenic 40.0%
! ATATTAGGAAGTGCACGAGT+GGG - chr2.1:6252694-6252713 MS.gene45545:intron 40.0%
! CAAAGTGCTACTCAGAAAGA+AGG + chr2.1:6254359-6254378 None:intergenic 40.0%
! GATGGCTGTGAAACGAATTT+TGG - chr2.1:6253304-6253323 MS.gene45545:intron 40.0%
! GCAATGCTGTTGGATTCTTT+TGG + chr2.1:6253554-6253573 None:intergenic 40.0%
! GTCAAAGAATCGGTGGTTTT+TGG - chr2.1:6253632-6253651 MS.gene45545:intron 40.0%
! GTGTCCATGAAAGACTTTTC+CGG + chr2.1:6253863-6253882 None:intergenic 40.0%
! TATATTAGGAAGTGCACGAG+TGG - chr2.1:6252693-6252712 MS.gene45545:intron 40.0%
! TGGTATCTGAAACATCATCC+GGG - chr2.1:6255319-6255338 MS.gene45545:CDS 40.0%
!! AAAGAATCGGTGGTTTTTGG+TGG - chr2.1:6253635-6253654 MS.gene45545:intron 40.0%
!! ACCACCGATTCTTTGACATT+AGG + chr2.1:6253629-6253648 None:intergenic 40.0%
!! ATGATTGCTGATTCAAGTGG+GGG + chr2.1:6255031-6255050 None:intergenic 40.0%
!! CATGATTGCTGATTCAAGTG+GGG + chr2.1:6255032-6255051 None:intergenic 40.0%
!! CCTATAACTTTGGAGTTAGG+GGG - chr2.1:6252754-6252773 MS.gene45545:CDS 40.0%
!! CGAATTTTGGTGGCAAAGTA+TGG - chr2.1:6253317-6253336 MS.gene45545:intron 40.0%
!! GTCATGATTGCTGATTCAAG+TGG + chr2.1:6255034-6255053 None:intergenic 40.0%
!! TGTTGAGGCTTTTAGAGATG+AGG - chr2.1:6251834-6251853 MS.gene45545:CDS 40.0%
!! TTTAGGGAAGCATCATGTTG+AGG - chr2.1:6251819-6251838 MS.gene45545:CDS 40.0%
!!! ACCAGCCATCCATTTTTTGA+AGG + chr2.1:6252007-6252026 None:intergenic 40.0%
!!! TGACATAGTTTTGGTGCCAT+TGG + chr2.1:6254487-6254506 None:intergenic 40.0%
!!! TTTTGTAACAGGAGTGTCCT+TGG - chr2.1:6252378-6252397 MS.gene45545:intron 40.0%
AAGGCCCTCAAGAAGGATTT+AGG - chr2.1:6251802-6251821 MS.gene45545:CDS 45.0%
AATGGTCAGGATTTCCCCAA+TGG - chr2.1:6254459-6254478 MS.gene45545:CDS 45.0%
AGGAGTTGCTCTCCAATTTC+TGG + chr2.1:6252544-6252563 None:intergenic 45.0%
AGGCCCTCAAGAAGGATTTA+GGG - chr2.1:6251803-6251822 MS.gene45545:CDS 45.0%
ATCCACACACATCAATGGTC+AGG - chr2.1:6254446-6254465 MS.gene45545:CDS 45.0%
ATCCTGACCATTGATGTGTG+TGG + chr2.1:6254451-6254470 None:intergenic 45.0%
CAATTCGAGGCACAATTGGT+TGG + chr2.1:6254043-6254062 None:intergenic 45.0%
CACACATCCACACACATCAA+TGG - chr2.1:6254441-6254460 MS.gene45545:CDS 45.0%
CACCAATGACACCAAAGCTA+TGG + chr2.1:6254385-6254404 None:intergenic 45.0%
CAGGTGGAGAAGATTGAAGA+CGG - chr2.1:6255219-6255238 MS.gene45545:CDS 45.0%
CATTCACCAACTCCTCCAAA+TGG + chr2.1:6255909-6255928 None:intergenic 45.0%
CCCCCTAACTCCAAAGTTAT+AGG + chr2.1:6252757-6252776 None:intergenic 45.0%
CGGTGTGCAACCTAACAATT+CGG + chr2.1:6252998-6253017 None:intergenic 45.0%
GAAAGTGAATCAACCAGTGC+TGG + chr2.1:6252787-6252806 None:intergenic 45.0%
GAAATTGTTGCTGAGCCTCT+TGG - chr2.1:6252221-6252240 MS.gene45545:intron 45.0%
GATTGTTATGTCTGCAGCAG+TGG - chr2.1:6252720-6252739 MS.gene45545:CDS 45.0%
GCAGCTATGGCTCCAATTAA+TGG + chr2.1:6252406-6252425 None:intergenic 45.0%
GCTTCCCTAAATCCTTCTTG+AGG + chr2.1:6251810-6251829 None:intergenic 45.0%
GGGGGATCCAGTAATATTGT+TGG + chr2.1:6255013-6255032 None:intergenic 45.0%
GTGTCCTTGGAGCCATTAAT+TGG - chr2.1:6252391-6252410 MS.gene45545:intron 45.0%
TGCAACATTTCCAGCAGCTA+TGG + chr2.1:6252419-6252438 None:intergenic 45.0%
TTAATTGGAGCCATAGCTGC+TGG - chr2.1:6252406-6252425 MS.gene45545:intron 45.0%
TTCAACTTCTTGGGACAGAG+AGG - chr2.1:6252804-6252823 MS.gene45545:intron 45.0%
TTCTCCTAGCCACAGCTTTA+TGG + chr2.1:6255980-6255999 None:intergenic 45.0%
! ACAGTGATTATGGGAAGCAC+GGG + chr2.1:6255073-6255092 None:intergenic 45.0%
! AGTTCTCAGGAGGGATGTTT+TGG + chr2.1:6254667-6254686 None:intergenic 45.0%
! GGCTGTGAAACGAATTTTGG+TGG - chr2.1:6253307-6253326 MS.gene45545:intron 45.0%
! TATTAGGAAGTGCACGAGTG+GGG - chr2.1:6252695-6252714 MS.gene45545:intron 45.0%
! TTTGGTTCAGGTTTCCTCCA+TGG - chr2.1:6256015-6256034 MS.gene45545:CDS 45.0%
!! ATAGCGGATACCATCCCATT+TGG - chr2.1:6255891-6255910 MS.gene45545:intron 45.0%
!! GGAGTTGGTGAATGTGGATT+TGG - chr2.1:6255915-6255934 MS.gene45545:intron 45.0%
!! TGCCATAGCTTTGGTGTCAT+TGG - chr2.1:6254380-6254399 MS.gene45545:intron 45.0%
!! TTTGGAGGAGTTGGTGAATG+TGG - chr2.1:6255909-6255928 MS.gene45545:intron 45.0%
!! TAAAATTTAAATTTATTCAA+AGG - chr2.1:6254719-6254738 MS.gene45545:intron 5.0%
!! TTAAAAAAATAAATAAAATC+GGG + chr2.1:6253248-6253267 None:intergenic 5.0%
!!! ATATTAATAAAACTTTTTTT+AGG + chr2.1:6253091-6253110 None:intergenic 5.0%
ACCAACTCCTCCAAATGGGA+TGG + chr2.1:6255904-6255923 None:intergenic 50.0%
ACCATCCCATTTGGAGGAGT+TGG - chr2.1:6255900-6255919 MS.gene45545:intron 50.0%
GATCTTGAAGGCCCTCAAGA+AGG - chr2.1:6251795-6251814 MS.gene45545:CDS 50.0%
GATTTCCCCAATGGCACCAA+TGG - chr2.1:6254468-6254487 MS.gene45545:CDS 50.0%
GGAGTTCTCAGTGGAAGCTT+TGG - chr2.1:6251657-6251676 MS.gene45545:CDS 50.0%
GGCTCCAATTAATGGCTCCA+AGG + chr2.1:6252398-6252417 None:intergenic 50.0%
GTCACCATAAAGCTGTGGCT+AGG - chr2.1:6255973-6255992 MS.gene45545:CDS 50.0%
GTGTGTGTGATGTGTGTGTG+TGG + chr2.1:6254426-6254445 None:intergenic 50.0%
TGTGTGATGTGTGTGTGTGG+TGG + chr2.1:6254423-6254442 None:intergenic 50.0%
! TGTGGTGGAGATGCAAGCTA+TGG + chr2.1:6254408-6254427 None:intergenic 50.0%
!! GCACTTTGGTGCCATAGCTT+TGG - chr2.1:6254371-6254390 MS.gene45545:intron 50.0%
!! GGGCCAACTCTGAAGGTTTT+AGG + chr2.1:6252444-6252463 None:intergenic 50.0%
!! TTGGTGCCATTGGTGCCATT+GGG + chr2.1:6254477-6254496 None:intergenic 50.0%
!! TTTGGTGCCATTGGTGCCAT+TGG + chr2.1:6254478-6254497 None:intergenic 50.0%
AGGGGGAAAATGTCCAGCAC+TGG - chr2.1:6252771-6252790 MS.gene45545:CDS 55.0%
GAAGTAGGGGCCAACTCTGA+AGG + chr2.1:6252451-6252470 None:intergenic 55.0%
GCAAAGTATGGGGCTTGTGC+AGG - chr2.1:6253329-6253348 MS.gene45545:intron 55.0%
GCGGATACCATCCCATTTGG+AGG - chr2.1:6255894-6255913 MS.gene45545:intron 55.0%
!! TGGTGCCATTGGTGCCATTG+GGG + chr2.1:6254476-6254495 None:intergenic 55.0%
! TAGGAAGTGCACGAGTGGGG+AGG - chr2.1:6252698-6252717 MS.gene45545:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6251655 6256154 6251655 ID=MS.gene45545
chr2.1 mRNA 6251655 6256154 6251655 ID=MS.gene45545.t1;Parent=MS.gene45545
chr2.1 exon 6255954 6256154 6255954 ID=MS.gene45545.t1.exon1;Parent=MS.gene45545.t1
chr2.1 CDS 6255954 6256154 6255954 ID=cds.MS.gene45545.t1;Parent=MS.gene45545.t1
chr2.1 exon 6255777 6255845 6255777 ID=MS.gene45545.t1.exon2;Parent=MS.gene45545.t1
chr2.1 CDS 6255777 6255845 6255777 ID=cds.MS.gene45545.t1;Parent=MS.gene45545.t1
chr2.1 exon 6255528 6255624 6255528 ID=MS.gene45545.t1.exon3;Parent=MS.gene45545.t1
chr2.1 CDS 6255528 6255624 6255528 ID=cds.MS.gene45545.t1;Parent=MS.gene45545.t1
chr2.1 exon 6255214 6255420 6255214 ID=MS.gene45545.t1.exon4;Parent=MS.gene45545.t1
chr2.1 CDS 6255214 6255420 6255214 ID=cds.MS.gene45545.t1;Parent=MS.gene45545.t1
chr2.1 exon 6254984 6255108 6254984 ID=MS.gene45545.t1.exon5;Parent=MS.gene45545.t1
chr2.1 CDS 6254984 6255108 6254984 ID=cds.MS.gene45545.t1;Parent=MS.gene45545.t1
chr2.1 exon 6254400 6254504 6254400 ID=MS.gene45545.t1.exon6;Parent=MS.gene45545.t1
chr2.1 CDS 6254400 6254504 6254400 ID=cds.MS.gene45545.t1;Parent=MS.gene45545.t1
chr2.1 exon 6254131 6254303 6254131 ID=MS.gene45545.t1.exon7;Parent=MS.gene45545.t1
chr2.1 CDS 6254131 6254303 6254131 ID=cds.MS.gene45545.t1;Parent=MS.gene45545.t1
chr2.1 exon 6252719 6252809 6252719 ID=MS.gene45545.t1.exon8;Parent=MS.gene45545.t1
chr2.1 CDS 6252719 6252809 6252719 ID=cds.MS.gene45545.t1;Parent=MS.gene45545.t1
chr2.1 exon 6252438 6252587 6252438 ID=MS.gene45545.t1.exon9;Parent=MS.gene45545.t1
chr2.1 CDS 6252438 6252587 6252438 ID=cds.MS.gene45545.t1;Parent=MS.gene45545.t1
chr2.1 exon 6251655 6251921 6251655 ID=MS.gene45545.t1.exon10;Parent=MS.gene45545.t1
chr2.1 CDS 6251655 6251921 6251655 ID=cds.MS.gene45545.t1;Parent=MS.gene45545.t1
Gene Sequence

>MS.gene45545

ATGGAGTTCTCAGTGGAAGCTTTGGAGAGAGATATAAAGAACATGAGAAAGTATTATGGGAGTGGAAAAACAAAAGAAGCATCATGGAGAGAATCACAACTAAAAGGGTTGCGTAACTTTGTCAAAGAAAATGAGGAAGAGATCTTGAAGGCCCTCAAGAAGGATTTAGGGAAGCATCATGTTGAGGCTTTTAGAGATGAGGTGTGTTTCTTATTCTACTTGCTACTCTTATAATAGTAATATGTATATGTATATTTCTGTTTAATTTGGTTTGCTTAATTAATCCATATGTATATATATAATTTGCAGGTTGGAACGTTAAAGAAATCCATTGATTTGGCAATAAAGTCCTTCAAAAAATGGATGGCTGGTAAAGAGGTTAGTTTATATATGTACAACACATGCAAAACAAATGAGAAAAGTGTATATTTTTTATTTCCATTATATTTAGTTTATTGAAAAGAAGAACAGTTGCACCATACTTTTACATGAAATTAAAGAACCGTGCCTTATTATTTTCAACTTAACAGGCTAAACTGCCCCAAATAGCACTACTTTCAAGTGCAGAAATTGTTGCTGAGCCTCTTGGTCTAGTCCTCATAATCTCATCATGGAATTTTCCATTTGGTGAGTAAAATATGGCTGCAGACATAAAATAAACTTTTAGTATATACAAATTAAATCTATAAAAAAAATTAAGTTCAAAGTTGTGTTTCTCTTGGTTTTTGTAACAGGAGTGTCCTTGGAGCCATTAATTGGAGCCATAGCTGCTGGAAATGTTGCAGTCCTAAAACCTTCAGAGTTGGCCCCTACTTCTTCTTCTCTTCTAGCCACTGTTCTACCAAATTATTTGGACAATAATGGCATTAAGATCATTGAAGGTGGACCAGAAATTGGAGAGCAACTCCTACATAAAAAATGGGACAAGATATTTTTCACTGGTCAACCTTACTATTTCTTTTACCCTCTCATTTCCATTTTTTTTATGTTTTTTTGATTTTATCAATGATAAAAAATTTCAAACTTGTAATGATCCAATATATTAGGAAGTGCACGAGTGGGGAGGATTGTTATGTCTGCAGCAGTGGAGCATCTCACACCTATAACTTTGGAGTTAGGGGGAAAATGTCCAGCACTGGTTGATTCACTTTCAACTTCTTGGGACAGAGAGGTACATGTTCATTTAATCTTGTCACATGGAATGTACCTTCTATTGTAGAAAGGCAATGTGGAATGGACAAAACAAAAGTAGCAAATTAATGAAGGACAAGAAAGAAAAAAAGAGAGTTATTTTTCGTTCCATTAAGTTTTATTAATATAGGACACAAGTCATAAAAATACCGAATTGTTAGGTTGCACACCGTAACCGTTGATTGAATCCCAACTCATTCACTAGTCTGTGAATTTCCGATGACCATTATCATTTTGGTTTACCTAAAAAAAGTTTTATTAATATAAACTAAGGAGTCCACAATGACTATATGTTAGGAGTTTGAACTTATAATCTCAAATGAAAGAGTTTAAATCTTTTCTAGGACATTCGCAAAATGATCGGTGATAACACTTTAACTAATAACAATTTTTTTCTTCCCCGATTTTATTTATTTTTTTAAACTGCTTACAAGATTTTTATTTCTGTTGAACAATAAGATGGCTGTGAAACGAATTTTGGTGGCAAAGTATGGGGCTTGTGCAGGACAAGCATGCATAGCAATTGATTATGTCCTTGTAGAAAAGAGCTTCAGTTCCACATTGGTAAAAAGCAGGAAATAATTTTTTTAAAAGTTTTTTATTATGCTGCAATTACACTATTAATCTTGAAGCATTACTCCTTTGTTTTATTCTCTTTAGGTGGAGTTAATGAAGGAAGGGATTAAAAAAATGTTTGGGGACAACCCAAAAGAATCCAACAGCATTGCAAGGATTGTTAATAAACAACATTCCAATAGAATCAAGAGTCTCCTCAGTGAACCTAATGTCAAAGAATCGGTGGTTTTTGGTGGTTCTATGCACGATGATGACTTGTATGCAATTAATACTCTCTTTTCTTGAATGTTCGACGAATTTTTAAATTCACGGATCATCATTTAATCTCTAAAAATTAGAATTGATTTTTAAAATTAACTGAATTTTAAAAAATATCATTGAATTTATAAAACTTTATTCTCATTAGATTCTATCACACAATTTAAATGATTGAATTAACCGGAAAAGTCTTTCATGGACACATTCCCAAATAAATATTATTTGGACACACTCACATGAAATTAATAAAACTAAATAAAAAGTATTTAATCATATCAATTGATATCTTGTAATTTTATTTTCCTTTAATTTTTTCTTGATTTTGTGTGTGTGACCAAATATTTTTATTTGGGTTTGTGTCCAACCAATTGTGCCTCGAATTGACTTATCCAAGAATGACTAAATGAGCAATTTTAAATATTAAGAATTTTTTCTTCAAAAAATATTTAGAATTTTAATAACTAAATTCACTTGTTTTACATTATAGAACAAGATTTTTTTCCTCTTAAGAATTTTAGGATGGTTTAGTTTCCGTATTTCATGTTTTCACCTTGACTTCAAATAATAAACATAAAATGATATAGATTTGATATTTTTCTAAATATTTTCTTGAATAATATTTGAAAATGTGAAAACATTTTCCTTGTTTTTTTTAATACCTTATTTCTATAGCTTGCCTTCTTTCTGAGTAGCACTTTGGTGCCATAGCTTTGGTGTCATTGGTGCCATAGCTTGCATCTCCACCACACACACACATCACACACACATCCACACACATCAATGGTCAGGATTTCCCCAATGGCACCAATGGCACCAAAACTATGTCATGGAAGTATTTCCCCTTCTTTCTTCTTTCTATTACAATTGTTCATTATTCCCTCCTGTTTCATATATAAGCAATCAAAACTAACTTACACCCTTTAAAAAAAAAGTAGTTAACTTTATTTAATTTTCTCAAAGTAACAGAAAAAATAATTGTATTCTCCAAAACATCCCTCCTGAGAACTTGTTCCATAAACATTATAGAGTTTTTGAAAAGTAAAATTTAAATTTATTCAAAGGTATTTTAGGAATGATAGCATTAACTATGGTAAAGTAAGAGAACATGCATCCAAAGAAAAAGAAAAAACAACTTAAAACTCGAAATCCTTGTAAAATGTACAATTTTCCCCGAGATCTATGTACAAAAAAAAAAAATTGAGAAATATAAAAACCTAAAAAAATGTTTTCAAAAGCCAAATGAACCTAAAAGAGACCAATTTTTCCTTACATGATTATCTTTATGATCAAAAGTATTTTTTGCACTGAAATCTTATGTAGATTTATGGAACCAACAATATTACTGGATCCCCCACTTGAATCAGCAATCATGACAGAAGAAATCTTTGGTCCCGTGCTTCCCATAATCACTGTAAGATAAGTACAATATTTTTTTTTCTTCCTTATTTTAGTCCTTTTTAATCAGTATTCTTCAAAAGTGTCAAGGCAAGTGATTCATTAGCCAAATGTTAACCAAGTTTAGTTTCAATTGTTTATTTGCAGGTGGAGAAGATTGAAGACGGTATTGAGTTCATAAACTCAAAGCCTAAACCTCTAGCAATTTATGCTTTCACAAAGAACAAAACACTGCAGAGAAGATTGGTATCTGAAACATCATCCGGGAGCATTGTATTTAATGATGCAATTCTACAGGTATTTATTTGCTGATAGTGACTTACATTATCTTCATTAATTAAAAACCTAACATATTTTCACTACTATGAAACCAGTAAGGTTTTGTTTTGCAAGCTGCTAAACTTCCACTTAACTTCTCTCTCAAGCTTACAACATTTTTTCACGAGCTTATAACATTTTTTTTCTAAATTGAATCATCTATAACCGGTTTTATGATGTAGCCGACTATTTATATACGGTTAGATTATGAAAGATGATTTTTCTTTCTTTTAACGGTCTTCAATCGACTGCATCGTAAGTCGATTGTATAGGATCCAAGTTTTTTTTTAAGACTATTTAAGTAGTATTTGAACTTATAATTTATATTGTATTGTTTTTTCTCATTTTTACCCTCACTATCTTATTGTGAAAAGTAAATATTAACTAAAAATATATTTTTTCGTCATTAAATATTTATCACTTGTTTCAACCGTTAATTTTATCAAGAACACCAATTGGCATATGAAAGATAATTTTTTTTTTTTTTTTTTGCAGTATATAGCGGATACCATCCCATTTGGAGGAGTTGGTGAATGTGGATTTGGCAAGTATCATGGGAAGTTCTCATTTGATGCATTCAGTCACCATAAAGCTGTGGCTAGGAGAAGTTACTACACTGATTTTTGGTTCAGGTTTCCTCCATGGAATCTTAACAAGTTCCAACTACTTGAAGAAGCTTACAATTTAAACTACATTGGAATACTTCTTGTTTTACTCGGCTTGAAGAGTTCAAAACGTTCATTATATGAGGCTTGTAAATGA
Protein sequence

>MS.gene45545.t1

MEFSVEALERDIKNMRKYYGSGKTKEASWRESQLKGLRNFVKENEEEILKALKKDLGKHHVEAFRDEVGTLKKSIDLAIKSFKKWMAGKEAKLPQIALLSSAEIVAEPLGLVLIISSWNFPFGVSLEPLIGAIAAGNVAVLKPSELAPTSSSLLATVLPNYLDNNGIKIIEGGPEIGEQLLHKKWDKIFFTGSARVGRIVMSAAVEHLTPITLELGGKCPALVDSLSTSWDREMAVKRILVAKYGACAGQACIAIDYVLVEKSFSSTLVELMKEGIKKMFGDNPKESNSIARIVNKQHSNRIKSLLSEPNVKESVVFGGSMHDDDLFMEPTILLDPPLESAIMTEEIFGPVLPIITVEKIEDGIEFINSKPKPLAIYAFTKNKTLQRRLVSETSSGSIVFNDAILQYIADTIPFGGVGECGFGKYHGKFSFDAFSHHKAVARRSYYTDFWFRFPPWNLNKFQLLEEAYNLNYIGILLVLLGLKSSKRSLYEACK