Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45563.t1 | XP_013452850.1 | 91.4 | 209 | 10 | 1 | 1 | 209 | 1 | 201 | 6.90E-101 | 376.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45563.t1 | Q9FMW4 | 52.1 | 190 | 88 | 2 | 20 | 208 | 31 | 218 | 1.3e-44 | 181.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45563.t1 | G7KKC8 | 91.4 | 209 | 11 | 1 | 1 | 209 | 1 | 202 | 5.0e-101 | 376.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052559 | MS.gene45563 | 0.815425 | 9.31E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45563.t1 | MTR_6g077990 | 91.388 | 209 | 11 | 1 | 1 | 209 | 1 | 202 | 2.41e-140 | 390 |
MS.gene45563.t1 | MTR_6g077990 | 91.388 | 209 | 10 | 1 | 1 | 209 | 1 | 201 | 5.85e-140 | 389 |
MS.gene45563.t1 | MTR_6g077990 | 96.053 | 152 | 6 | 0 | 58 | 209 | 8 | 159 | 8.13e-105 | 299 |
MS.gene45563.t1 | MTR_6g077990 | 88.816 | 152 | 9 | 1 | 1 | 152 | 1 | 144 | 2.53e-96 | 277 |
MS.gene45563.t1 | MTR_8g100065 | 69.355 | 186 | 55 | 2 | 22 | 206 | 1 | 185 | 2.83e-89 | 260 |
MS.gene45563.t1 | MTR_8g100065 | 73.964 | 169 | 43 | 1 | 39 | 206 | 39 | 207 | 5.60e-88 | 258 |
MS.gene45563.t1 | MTR_1g114640 | 49.254 | 201 | 102 | 0 | 3 | 203 | 18 | 218 | 1.92e-62 | 194 |
MS.gene45563.t1 | MTR_1g033750 | 50.820 | 183 | 85 | 1 | 29 | 206 | 41 | 223 | 2.86e-61 | 191 |
MS.gene45563.t1 | MTR_1g114690 | 47.449 | 196 | 99 | 2 | 13 | 207 | 27 | 219 | 1.95e-58 | 183 |
MS.gene45563.t1 | MTR_1g114690 | 48.205 | 195 | 97 | 2 | 13 | 206 | 27 | 218 | 1.09e-57 | 181 |
MS.gene45563.t1 | MTR_1g114750 | 48.555 | 173 | 89 | 0 | 34 | 206 | 49 | 221 | 2.52e-56 | 178 |
MS.gene45563.t1 | MTR_8g100065 | 66.923 | 130 | 41 | 2 | 22 | 150 | 1 | 129 | 1.25e-55 | 173 |
MS.gene45563.t1 | MTR_8g100065 | 73.451 | 113 | 29 | 1 | 39 | 150 | 39 | 151 | 1.41e-54 | 171 |
MS.gene45563.t1 | MTR_1g115130 | 52.349 | 149 | 71 | 0 | 58 | 206 | 46 | 194 | 8.40e-51 | 163 |
MS.gene45563.t1 | MTR_1g114690 | 41.048 | 229 | 97 | 3 | 13 | 206 | 27 | 252 | 2.94e-50 | 164 |
MS.gene45563.t1 | MTR_7g083570 | 41.463 | 164 | 96 | 0 | 41 | 204 | 112 | 275 | 4.12e-42 | 144 |
MS.gene45563.t1 | MTR_3g100750 | 38.312 | 154 | 94 | 1 | 50 | 203 | 103 | 255 | 4.21e-40 | 137 |
MS.gene45563.t1 | MTR_1g114680 | 58.559 | 111 | 46 | 0 | 98 | 208 | 55 | 165 | 9.60e-40 | 134 |
MS.gene45563.t1 | MTR_1g114640 | 44.966 | 149 | 82 | 0 | 3 | 151 | 18 | 166 | 2.90e-37 | 128 |
MS.gene45563.t1 | MTR_8g069110 | 37.736 | 159 | 98 | 1 | 45 | 203 | 110 | 267 | 1.14e-35 | 127 |
MS.gene45563.t1 | MTR_1g114690 | 46.043 | 139 | 71 | 2 | 13 | 150 | 27 | 162 | 2.78e-35 | 124 |
MS.gene45563.t1 | MTR_2g076350 | 36.250 | 160 | 101 | 1 | 45 | 203 | 66 | 225 | 8.30e-30 | 110 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45563.t1 | AT5G23370 | 52.105 | 190 | 88 | 2 | 20 | 208 | 31 | 218 | 5.72e-59 | 185 |
MS.gene45563.t1 | AT5G08350 | 49.198 | 187 | 93 | 1 | 20 | 206 | 31 | 215 | 2.11e-56 | 178 |
MS.gene45563.t1 | AT5G23350 | 50.820 | 183 | 87 | 2 | 23 | 204 | 34 | 214 | 4.29e-55 | 175 |
MS.gene45563.t1 | AT5G23360 | 49.189 | 185 | 85 | 1 | 20 | 204 | 31 | 206 | 6.60e-55 | 174 |
MS.gene45563.t1 | AT5G13200 | 40.000 | 160 | 96 | 0 | 45 | 204 | 102 | 261 | 1.06e-39 | 137 |
MS.gene45563.t1 | AT4G01600 | 38.150 | 173 | 106 | 1 | 32 | 203 | 13 | 185 | 1.37e-38 | 132 |
MS.gene45563.t1 | AT4G01600 | 40.625 | 160 | 94 | 1 | 45 | 203 | 65 | 224 | 3.17e-38 | 132 |
MS.gene45563.t1 | AT2G22475 | 37.500 | 160 | 97 | 2 | 45 | 203 | 134 | 291 | 4.87e-38 | 133 |
MS.gene45563.t1 | AT4G01600 | 43.537 | 147 | 82 | 1 | 58 | 203 | 73 | 219 | 7.32e-37 | 128 |
MS.gene45563.t1 | AT1G28200 | 38.037 | 163 | 99 | 2 | 41 | 203 | 94 | 254 | 1.69e-36 | 128 |
MS.gene45563.t1 | AT1G28200 | 38.037 | 163 | 99 | 2 | 41 | 203 | 94 | 254 | 1.69e-36 | 128 |
MS.gene45563.t1 | AT5G13200 | 41.509 | 106 | 62 | 0 | 45 | 150 | 102 | 207 | 5.96e-23 | 92.4 |
MS.gene45563.t1 | AT4G40100 | 29.508 | 183 | 97 | 2 | 24 | 203 | 63 | 216 | 7.20e-23 | 92.4 |
MS.gene45563.t1 | AT2G22475 | 35.043 | 117 | 73 | 2 | 45 | 160 | 134 | 248 | 8.08e-20 | 84.7 |
Find 32 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAAGGATGACTTTGAATTT+TGG | 0.177338 | 6.4:-52382161 | MS.gene45563:CDS |
CAGATAAAGAAAACTCAAAT+AGG | 0.238573 | 6.4:-52383496 | MS.gene45563:CDS |
CATACTCTGATGAAGTCTTT+TGG | 0.272298 | 6.4:-52383697 | None:intergenic |
GTTATGGTTGCAGTGAAATT+AGG | 0.306142 | 6.4:-52383122 | MS.gene45563:intron |
AAAGTGGTTCTTACTTGTTA+TGG | 0.315949 | 6.4:+52383597 | None:intergenic |
ACTTCTTTAATCTTCTCTAT+TGG | 0.324393 | 6.4:+52382237 | None:intergenic |
TTGAAGGGTAAGTTAAGTTT+AGG | 0.334682 | 6.4:-52383080 | MS.gene45563:CDS |
GAATTTATTGGCCATGGAAA+TGG | 0.352975 | 6.4:+52382089 | None:intergenic |
ACCACAGCTGGTCCTATTGC+TGG | 0.386738 | 6.4:-52382954 | MS.gene45563:CDS |
CTTTCAGAATTTATTGGCCA+TGG | 0.408910 | 6.4:+52382083 | None:intergenic |
TCTGCAGAATAGAAGCTTGT+AGG | 0.416048 | 6.4:+52382885 | None:intergenic |
GGTTTCAAGATTACTTTGTA+AGG | 0.428405 | 6.4:+52382843 | None:intergenic |
ATAAAGAGAATTCCAGCAAT+AGG | 0.429382 | 6.4:+52382942 | None:intergenic |
AGATAAAGAAAACTCAAATA+GGG | 0.461660 | 6.4:-52383495 | MS.gene45563:CDS |
ATATATAGAAGTAGTGACTA+AGG | 0.483276 | 6.4:-52382178 | MS.gene45563:CDS |
ATGGAGGTTGAATCAGAAGT+TGG | 0.483557 | 6.4:+52383616 | None:intergenic |
GGTGCTAAAATTATTCAAGA+AGG | 0.492255 | 6.4:-52383059 | MS.gene45563:CDS |
ATTATTCAAGAAGGTGGAAG+AGG | 0.509163 | 6.4:-52383050 | MS.gene45563:CDS |
TGCTATTTATATACCACAGC+TGG | 0.515042 | 6.4:-52382966 | MS.gene45563:CDS |
ACAAGCTTCTATTCTGCAGA+TGG | 0.530966 | 6.4:-52382882 | MS.gene45563:CDS |
GCTAAAATTATTCAAGAAGG+TGG | 0.533103 | 6.4:-52383056 | MS.gene45563:CDS |
GCATATAGTATTCATGAACA+TGG | 0.551487 | 6.4:-52383443 | MS.gene45563:intron |
CAAATAGGGATTTCACAAGA+AGG | 0.555465 | 6.4:-52383481 | MS.gene45563:CDS |
GTGGTTCTTACTTGTTATGG+AGG | 0.556322 | 6.4:+52383600 | None:intergenic |
TGCAGATGGGGACTTAGTAA+AGG | 0.575511 | 6.4:-52382868 | MS.gene45563:CDS |
AAATAGGGATTTCACAAGAA+GGG | 0.576471 | 6.4:-52383480 | MS.gene45563:CDS |
CAAGCTTCTATTCTGCAGAT+GGG | 0.579988 | 6.4:-52382881 | MS.gene45563:CDS |
TCTCAATAATGCCATTTCCA+TGG | 0.601101 | 6.4:-52382100 | MS.gene45563:CDS |
ATAACATAAAAGCATCTACT+CGG | 0.629799 | 6.4:+52383667 | None:intergenic |
TCCAGCAATAGGACCAGCTG+TGG | 0.636838 | 6.4:+52382953 | None:intergenic |
AAGCTTCTATTCTGCAGATG+GGG | 0.642873 | 6.4:-52382880 | MS.gene45563:CDS |
ATAAAAGCATCTACTCGGAG+AGG | 0.656544 | 6.4:+52383672 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAATTATTTCCATATA+AGG | + | chr6.4:52383089-52383108 | None:intergenic | 10.0% |
!!! | ATCTATATTTTTTTTGTATT+TGG | + | chr6.4:52382559-52382578 | None:intergenic | 10.0% |
!! | AATTAAAGGAAAAAAAAAAG+TGG | + | chr6.4:52382196-52382215 | None:intergenic | 15.0% |
!!! | ATATTTTTTTTGTATTTGGT+CGG | + | chr6.4:52382555-52382574 | None:intergenic | 15.0% |
!!! | TTATTTTCTCAAATTATTAC+CGG | - | chr6.4:52382590-52382609 | MS.gene45563:intron | 15.0% |
!! | AAAACAACTTATACCTTATA+TGG | - | chr6.4:52383073-52383092 | MS.gene45563:CDS | 20.0% |
!! | AATAAGCTGAAAATAGTTTA+TGG | + | chr6.4:52383306-52383325 | None:intergenic | 20.0% |
!! | AGATAAAGAAAACTCAAATA+GGG | - | chr6.4:52382279-52382298 | MS.gene45563:intron | 20.0% |
!! | ATAAGCTGAAAATAGTTTAT+GGG | + | chr6.4:52383305-52383324 | None:intergenic | 20.0% |
!! | GATAAAAATTCTATGTATCA+AGG | + | chr6.4:52383466-52383485 | None:intergenic | 20.0% |
!! | GATGAAATGAAAGAAATTAA+AGG | + | chr6.4:52382210-52382229 | None:intergenic | 20.0% |
!! | TATACCAATAACAAAGTAAA+AGG | - | chr6.4:52382236-52382255 | MS.gene45563:CDS | 20.0% |
!!! | AAAACCTTTTACTTTGTTAT+TGG | + | chr6.4:52382243-52382262 | None:intergenic | 20.0% |
!!! | AACATTTTCAAGCATATTTT+TGG | - | chr6.4:52382748-52382767 | MS.gene45563:intron | 20.0% |
!!! | ACATTTTCAAGCATATTTTT+GGG | - | chr6.4:52382749-52382768 | MS.gene45563:intron | 20.0% |
! | ACTTCTTTAATCTTCTCTAT+TGG | + | chr6.4:52383540-52383559 | None:intergenic | 25.0% |
! | AGATTGTGACATAATCATAA+AGG | + | chr6.4:52382439-52382458 | None:intergenic | 25.0% |
! | ATATATAGAAGTAGTGACTA+AGG | - | chr6.4:52383596-52383615 | MS.gene45563:intron | 25.0% |
! | ATTGCATTCTTCTGATATAA+AGG | - | chr6.4:52383491-52383510 | MS.gene45563:CDS | 25.0% |
! | CAGATAAAGAAAACTCAAAT+AGG | - | chr6.4:52382278-52382297 | MS.gene45563:intron | 25.0% |
! | GCAAATAAGCTAATTAAAGT+TGG | + | chr6.4:52382955-52382974 | None:intergenic | 25.0% |
! | TCAAACTTTCAATTCAATCA+AGG | - | chr6.4:52382397-52382416 | MS.gene45563:intron | 25.0% |
! | TCAAATAAGACAATTCAAAC+AGG | + | chr6.4:52383215-52383234 | None:intergenic | 25.0% |
!! | TATAAAGGTTTTTGTAATGC+AGG | - | chr6.4:52383506-52383525 | MS.gene45563:intron | 25.0% |
!! | TCTTATTTGAGATTATCTAC+TGG | - | chr6.4:52383225-52383244 | MS.gene45563:intron | 25.0% |
!!! | AAATTTTCTGAGACTTTGAA+GGG | - | chr6.4:52382679-52382698 | MS.gene45563:intron | 25.0% |
!!! | AGCTTATTTTCATAAGCTAT+AGG | - | chr6.4:52383040-52383059 | MS.gene45563:CDS | 25.0% |
!!! | ATAACATAAAAGCATCTACT+CGG | + | chr6.4:52382110-52382129 | None:intergenic | 25.0% |
!!! | TAAATTTTCTGAGACTTTGA+AGG | - | chr6.4:52382678-52382697 | MS.gene45563:intron | 25.0% |
!!! | TTTTGAGGAAATTATCATCA+TGG | + | chr6.4:52382136-52382155 | None:intergenic | 25.0% |
AAATAGGGATTTCACAAGAA+GGG | - | chr6.4:52382294-52382313 | MS.gene45563:intron | 30.0% | |
AAATCTTTCATGTGAAGTGT+CGG | + | chr6.4:52382508-52382527 | None:intergenic | 30.0% | |
ATAAAGAGAATTCCAGCAAT+AGG | + | chr6.4:52382835-52382854 | None:intergenic | 30.0% | |
GCATATAGTATTCATGAACA+TGG | - | chr6.4:52382331-52382350 | MS.gene45563:intron | 30.0% | |
GCTAAAATTATTCAAGAAGG+TGG | - | chr6.4:52382718-52382737 | MS.gene45563:intron | 30.0% | |
GGTGCTAAAATTATTCAAGA+AGG | - | chr6.4:52382715-52382734 | MS.gene45563:intron | 30.0% | |
GGTTTCAAGATTACTTTGTA+AGG | + | chr6.4:52382934-52382953 | None:intergenic | 30.0% | |
TTAAACTCTCACAAACAATC+TGG | + | chr6.4:52383263-52383282 | None:intergenic | 30.0% | |
TTGAAGGGTAAGTTAAGTTT+AGG | - | chr6.4:52382694-52382713 | MS.gene45563:intron | 30.0% | |
! | AAAGTGGTTCTTACTTGTTA+TGG | + | chr6.4:52382180-52382199 | None:intergenic | 30.0% |
! | CTAAGGATGACTTTGAATTT+TGG | - | chr6.4:52383613-52383632 | MS.gene45563:CDS | 30.0% |
! | GCAAAATGCAACTTTTACAT+TGG | + | chr6.4:52382860-52382879 | None:intergenic | 30.0% |
!! | TTTGGTTCATGGGATTTTTA+AGG | - | chr6.4:52383631-52383650 | MS.gene45563:CDS | 30.0% |
!!! | GACTTTGAATTTTGGTTCAT+GGG | - | chr6.4:52383621-52383640 | MS.gene45563:CDS | 30.0% |
!!! | TGACTTTGAATTTTGGTTCA+TGG | - | chr6.4:52383620-52383639 | MS.gene45563:CDS | 30.0% |
ATTATTCAAGAAGGTGGAAG+AGG | - | chr6.4:52382724-52382743 | MS.gene45563:intron | 35.0% | |
CAAATAGGGATTTCACAAGA+AGG | - | chr6.4:52382293-52382312 | MS.gene45563:intron | 35.0% | |
GAATTTATTGGCCATGGAAA+TGG | + | chr6.4:52383688-52383707 | None:intergenic | 35.0% | |
GTTATGGTTGCAGTGAAATT+AGG | - | chr6.4:52382652-52382671 | MS.gene45563:intron | 35.0% | |
TGTGAATGAAACACTGAAAC+CGG | + | chr6.4:52382612-52382631 | None:intergenic | 35.0% | |
! | AAGTTGCATTTTGCAGTGAA+AGG | - | chr6.4:52382866-52382885 | MS.gene45563:CDS | 35.0% |
! | AATCAGAAGTTGGAGTTTTG+AGG | + | chr6.4:52382151-52382170 | None:intergenic | 35.0% |
! | TCTCAATAATGCCATTTCCA+TGG | - | chr6.4:52383674-52383693 | MS.gene45563:CDS | 35.0% |
! | TGCTATTTATATACCACAGC+TGG | - | chr6.4:52382808-52382827 | MS.gene45563:intron | 35.0% |
AAGCTTCTATTCTGCAGATG+GGG | - | chr6.4:52382894-52382913 | MS.gene45563:CDS | 40.0% | |
ACAAGCTTCTATTCTGCAGA+TGG | - | chr6.4:52382892-52382911 | MS.gene45563:CDS | 40.0% | |
AGCTTATTTCCACAAGCTCT+CGG | - | chr6.4:52383318-52383337 | MS.gene45563:intron | 40.0% | |
ATGGAGGTTGAATCAGAAGT+TGG | + | chr6.4:52382161-52382180 | None:intergenic | 40.0% | |
ATTCACAGTTGTTGACCTTG+TGG | - | chr6.4:52382625-52382644 | MS.gene45563:intron | 40.0% | |
CAAGCTTCTATTCTGCAGAT+GGG | - | chr6.4:52382893-52382912 | MS.gene45563:CDS | 40.0% | |
GACAATTCAAACAGGTCCTA+AGG | + | chr6.4:52383207-52383226 | None:intergenic | 40.0% | |
GTTTACTCAACCAAAGCCTT+AGG | - | chr6.4:52383188-52383207 | MS.gene45563:intron | 40.0% | |
TCTGCAGAATAGAAGCTTGT+AGG | + | chr6.4:52382892-52382911 | None:intergenic | 40.0% | |
TTGACCTTGTGGTTGTGTTA+TGG | - | chr6.4:52382636-52382655 | MS.gene45563:intron | 40.0% | |
!! | ATAAAAGCATCTACTCGGAG+AGG | + | chr6.4:52382105-52382124 | None:intergenic | 40.0% |
!! | GTGGTTCTTACTTGTTATGG+AGG | + | chr6.4:52382177-52382196 | None:intergenic | 40.0% |
!!! | GCATATTTTTGGGATGCAAG+AGG | - | chr6.4:52382759-52382778 | MS.gene45563:intron | 40.0% |
GCAACCATAACACAACCACA+AGG | + | chr6.4:52382643-52382662 | None:intergenic | 45.0% | |
TCAAACAGGTCCTAAGGCTT+TGG | + | chr6.4:52383201-52383220 | None:intergenic | 45.0% | |
TGCAGATGGGGACTTAGTAA+AGG | - | chr6.4:52382906-52382925 | MS.gene45563:CDS | 45.0% | |
! | AAGCTATTTCCGAGAGCTTG+TGG | + | chr6.4:52383330-52383349 | None:intergenic | 45.0% |
!! | TTGGTCGGTGTCACACATAT+TGG | + | chr6.4:52382540-52382559 | None:intergenic | 45.0% |
ACCACAGCTGGTCCTATTGC+TGG | - | chr6.4:52382820-52382839 | MS.gene45563:intron | 55.0% | |
TCCAGCAATAGGACCAGCTG+TGG | + | chr6.4:52382824-52382843 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 52382086 | 52383710 | 52382086 | ID=MS.gene45563 |
chr6.4 | mRNA | 52382086 | 52383710 | 52382086 | ID=MS.gene45563.t1;Parent=MS.gene45563 |
chr6.4 | exon | 52383611 | 52383710 | 52383611 | ID=MS.gene45563.t1.exon1;Parent=MS.gene45563.t1 |
chr6.4 | CDS | 52383611 | 52383710 | 52383611 | ID=cds.MS.gene45563.t1;Parent=MS.gene45563.t1 |
chr6.4 | exon | 52383444 | 52383515 | 52383444 | ID=MS.gene45563.t1.exon2;Parent=MS.gene45563.t1 |
chr6.4 | CDS | 52383444 | 52383515 | 52383444 | ID=cds.MS.gene45563.t1;Parent=MS.gene45563.t1 |
chr6.4 | exon | 52382857 | 52383131 | 52382857 | ID=MS.gene45563.t1.exon3;Parent=MS.gene45563.t1 |
chr6.4 | CDS | 52382857 | 52383131 | 52382857 | ID=cds.MS.gene45563.t1;Parent=MS.gene45563.t1 |
chr6.4 | exon | 52382086 | 52382268 | 52382086 | ID=MS.gene45563.t1.exon4;Parent=MS.gene45563.t1 |
chr6.4 | CDS | 52382086 | 52382268 | 52382086 | ID=cds.MS.gene45563.t1;Parent=MS.gene45563.t1 |
Gene Sequence |
Protein sequence |