AlfalfaGEDB | MS.gene052559

M. sativa cultivar XinJiangDaYe / MS.gene052559

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363
PFAM: PF01565.26 PF08031.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052559.t1	XP_003608243.1	93	470	33	0	1	470	59	528	1.90E-263	917.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052559.t1	Q9FZC5	55.9	465	199	4	4	466	65	525	6.8e-153	542.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052559.t1	Q2HTY4	93.0	470	33	0	1	470	59	528	1.4e-263	917.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051699	MS.gene052559	0.810229	1.28E-50	-1.69E-46
MS.gene052053	MS.gene052559	0.809386	1.94E-50	-1.69E-46
MS.gene052559	MS.gene052560	0.912229	2.47E-83	-1.69E-46
MS.gene052559	MS.gene055964	0.818504	1.89E-52	-1.69E-46
MS.gene052559	MS.gene056677	0.81073	9.97E-51	-1.69E-46
MS.gene052559	MS.gene05952	0.826133	3.21E-54	-1.69E-46
MS.gene052559	MS.gene06023	0.819024	1.44E-52	-1.69E-46
MS.gene052559	MS.gene066723	0.915385	6.27E-85	-1.69E-46
MS.gene052559	MS.gene066724	0.968379	1.36E-128	-1.69E-46
MS.gene052559	MS.gene06842	0.839204	1.82E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052559.t1	MTR_4g091200	92.979	470	33	0	1	470	59	528	0.0	896
MS.gene052559.t1	MTR_6g017205	91.453	468	40	0	1	468	59	526	0.0	871
MS.gene052559.t1	MTR_4g057990	82.303	469	79	2	1	469	59	523	0.0	781
MS.gene052559.t1	MTR_4g091190	80.342	468	90	1	1	468	63	528	0.0	768
MS.gene052559.t1	MTR_4g088355	79.104	469	98	0	1	469	66	534	0.0	762
MS.gene052559.t1	MTR_2g023590	80.000	470	91	2	1	469	1	468	0.0	754
MS.gene052559.t1	MTR_4g091170	73.420	459	104	1	10	468	102	542	0.0	710
MS.gene052559.t1	MTR_4g091150	63.675	468	168	2	1	466	71	538	0.0	600
MS.gene052559.t1	MTR_2g031560	54.506	466	209	2	3	467	59	522	0.0	545
MS.gene052559.t1	MTR_2g031590	53.715	471	209	4	3	467	64	531	3.57e-180	515

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052559.t1	AT4G20800	55.579	466	204	2	4	469	64	526	1.16e-178	511
MS.gene052559.t1	AT1G26420	55.172	464	202	4	4	466	65	523	1.36e-176	506
MS.gene052559.t1	AT1G26390	55.914	465	199	4	4	466	65	525	3.00e-175	502
MS.gene052559.t1	AT1G26380	55.388	464	201	4	4	466	65	523	6.54e-175	501
MS.gene052559.t1	AT1G30720	53.632	468	212	3	2	468	63	526	5.01e-173	496
MS.gene052559.t1	AT1G34575	55.342	468	195	6	3	466	65	522	1.29e-172	496
MS.gene052559.t1	AT1G30730	52.350	468	218	3	2	468	62	525	1.72e-170	490
MS.gene052559.t1	AT1G26400	53.632	468	211	6	4	470	65	527	1.82e-170	490
MS.gene052559.t1	AT1G30710	54.449	472	200	7	3	469	68	529	2.79e-170	490
MS.gene052559.t1	AT1G26410	55.172	464	202	5	4	466	89	547	4.53e-169	488

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Find 85 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGTGGAATTAATCCA+AGG	0.600902	4.3:+22832513	None:intergenic
AAACTTGCTTCCATATGTTT+TGG	0.269184	4.3:+22832050	None:intergenic
AACAAGCTTGCTTTCCCATC+TGG	0.299204	4.3:-22833038	MS.gene052559:CDS
AACAAGTCAAGTATAACAAA+AGG	0.433036	4.3:+22833161	None:intergenic
AACAAGTTTCCTACTCTATG+AGG	0.510558	4.3:+22832264	None:intergenic
AAGAAGCTCTAGAATCTATA+TGG	0.334429	4.3:-22832377	MS.gene052559:CDS
AAGCTGAATGTTGTTGCTTT+TGG	0.230709	4.3:+22833238	None:intergenic
AATAGATCTTTATGCAGTTT+TGG	0.273624	4.3:+22832699	None:intergenic
AATCATTAGACCACGAATTA+AGG	0.276835	4.3:+22832229	None:intergenic
AATTAATCCAAGGCATTGAA+AGG	0.570542	4.3:+22832523	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGTGGAATTAATCCA+AGG	+	chr4.3:22832782-22832801	None:intergenic	30.0%
AATCATTAGACCACGAATTA+AGG	+	chr4.3:22833066-22833085	None:intergenic	30.0%
AATTATAGGGATGCTGATAT+TGG	-	chr4.3:22833181-22833200	MS.gene052559:CDS	30.0%
ATTTACAAGAATCAACAGCA+TGG	-	chr4.3:22832177-22832196	MS.gene052559:CDS	30.0%
CAACCTAATGTTGTTCAAAT+TGG	-	chr4.3:22832626-22832645	MS.gene052559:CDS	30.0%
TCAAATCTCGTTACATTACT+TGG	+	chr4.3:22833217-22833236	None:intergenic	30.0%
TCTTTCATGGAAACTTCAAT+TGG	-	chr4.3:22832478-22832497	MS.gene052559:CDS	30.0%
TGACCAATTTGAACAACATT+AGG	+	chr4.3:22832632-22832651	None:intergenic	30.0%
TGATTCAATACCTTAATTCG+TGG	-	chr4.3:22833053-22833072	MS.gene052559:CDS	30.0%
TTTACAAGAATCAACAGCAT+GGG	-	chr4.3:22832178-22832197	MS.gene052559:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	22831951	22833363	22831951	ID=MS.gene052559
chr4.3	mRNA	22831951	22833363	22831951	ID=MS.gene052559.t1;Parent=MS.gene052559
chr4.3	exon	22831951	22833363	22831951	ID=MS.gene052559.t1.exon1;Parent=MS.gene052559.t1
chr4.3	CDS	22831951	22833363	22831951	ID=cds.MS.gene052559.t1;Parent=MS.gene052559.t1

Gene Sequence

>MS.gene052559

ATGAAAATACAAAATAAGAGATTTAAAACAGCAACAACACCGAAACCTTTGGCGATTATAACTGCAAAAGACGATTCTCATGTCCAAGAAACAGTTAAATGTGCCAAAAGCAACAACATTCAGCTTAGAATTCGAAGTGGCGGTCACGACTATGAAGGTTTTTCATATGTATCAGATGTCCCTTTTGTTATACTTGACTTGTTTAATCTCAATTCAGTTGATGTCAATTTACAAGAATCAACAGCATGGGTTGAATCAGGTGCAACACTTGGCAAGATTTATTATACCATTGCAAACAAAAGCAACAAGCTTGCTTTCCCATCTGGGGTCTGCTTTACTCTAGGTGCTGGTGGTCATTTCTCTGGTGGTGGGTATGGAAATTTGATGAGAAAATTTGGTCTTTCTGTTGATAATATTATCGATGCAAAAATTGTTGATGTTAAGGGTAATATTCTTGATAGAAAATCAATGGGAGAAGATCTTTTTTGGGCTATAAGAGGTGGTGGTGGTGCTAGTTTTGGTGTTATTCTTTCATGGAAACTTCAATTGGTTCCGATAACTCCACAGGTTATCGTTTTCGATGTGAAAAGGAATGTCAGTGAAGGTGCAACTGATGTTGTTTACAAATGGCAATCAATTGCACCAAAACTGCATAAAGATCTATTCATTAGAGTGCAACCTAATGTTGTTCAAATTGGTCAAGAGGGAAAAAAGGTAGTGCAAGTTAGTTTCATTGGTCAATTTTTAGGAAAAGTTGAAAGACTTTTAATTTTGATGAGTAAGGAATTCCCCGAATTAGGTTTGAACCAAAGTGATTGCCTTTCAATGCCTTGGATTAATTCCACTCTTTTTTGGTATGGTCAGCCAATTGGTACTCCTCTTGAAGCATTGTTGGAAGAACCAAAGGATCCTCAACCAATTTATCAAAAAAATAAATCAGATTATGTGAAGAAACCTATTCCTAAAGAAGCTCTAGAATCTATATGGAAATTGATGATTGAAGGTGAGAATTTCCTTATGCAATGGAATCCATATGGTGGAAAGATGAAAGAGATATTGCCATCAGAAACACCGTTTCCTCATAGAGTAGGAAACTTGTTCTTGATTCAATACCTTAATTCGTGGTCTAATGATTCTTCTGAAGTTAGTGAACGTCATGTGAATTTTTCAAGATCGTTTTATGAATTTATGACGCCTTATGTTTCGAATTCTCCGAGGGAGGCATTTCTCAATTATAGGGATGCTGATATTGGTGCTAATCATCCAAGTAATGTAACGAGATTTGACATTGCCAAAACATATGGAAGCAAGTTTTTCAAAGGAAATTTTGAAAGACTCGTTAGTGTAAAAACCAAAGTTGATCCTGAGAATTTCTTTAGATATGAACAAAGTATTCCTACTAGATCATTGTAA

Protein sequence

>MS.gene052559.t1

MKIQNKRFKTATTPKPLAIITAKDDSHVQETVKCAKSNNIQLRIRSGGHDYEGFSYVSDVPFVILDLFNLNSVDVNLQESTAWVESGATLGKIYYTIANKSNKLAFPSGVCFTLGAGGHFSGGGYGNLMRKFGLSVDNIIDAKIVDVKGNILDRKSMGEDLFWAIRGGGGASFGVILSWKLQLVPITPQVIVFDVKRNVSEGATDVVYKWQSIAPKLHKDLFIRVQPNVVQIGQEGKKVVQVSFIGQFLGKVERLLILMSKEFPELGLNQSDCLSMPWINSTLFWYGQPIGTPLEALLEEPKDPQPIYQKNKSDYVKKPIPKEALESIWKLMIEGENFLMQWNPYGGKMKEILPSETPFPHRVGNLFLIQYLNSWSNDSSEVSERHVNFSRSFYEFMTPYVSNSPREAFLNYRDADIGANHPSNVTRFDIAKTYGSKFFKGNFERLVSVKTKVDPENFFRYEQSIPTRSL