Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45784.t1 | XP_003605398.2 | 94.9 | 924 | 47 | 0 | 1 | 924 | 5 | 928 | 0.00E+00 | 1624 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45784.t1 | Q8CFE4 | 32.4 | 618 | 386 | 14 | 10 | 614 | 7 | 605 | 9.4e-82 | 306.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45784.t1 | G7JKS9 | 94.9 | 924 | 47 | 0 | 1 | 924 | 5 | 928 | 0.0e+00 | 1624.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45784 | MS.gene033983 | PPI |
| MS.gene45784 | MS.gene36285 | PPI |
| MS.gene45784 | MS.gene79543 | PPI |
| MS.gene45784 | MS.gene89100 | PPI |
| MS.gene45784 | MS.gene33357 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45784.t1 | MTR_4g030910 | 97.403 | 924 | 24 | 0 | 1 | 924 | 5 | 928 | 0.0 | 1857 |
| MS.gene45784.t1 | MTR_6g086565 | 22.491 | 578 | 372 | 15 | 23 | 581 | 5 | 525 | 2.14e-23 | 107 |
| MS.gene45784.t1 | MTR_6g086565 | 22.491 | 578 | 372 | 15 | 23 | 581 | 5 | 525 | 6.69e-23 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45784.t1 | AT1G22870 | 65.642 | 943 | 270 | 11 | 1 | 923 | 5 | 913 | 0.0 | 1216 |
| MS.gene45784.t1 | AT1G71410 | 64.700 | 932 | 293 | 12 | 1 | 923 | 5 | 909 | 0.0 | 1185 |
| MS.gene45784.t1 | AT1G71410 | 64.700 | 932 | 293 | 12 | 1 | 923 | 5 | 909 | 0.0 | 1185 |
| MS.gene45784.t1 | AT1G22870 | 68.187 | 833 | 227 | 6 | 1 | 823 | 5 | 809 | 0.0 | 1167 |
| MS.gene45784.t1 | AT1G22870 | 62.916 | 782 | 236 | 11 | 162 | 923 | 1 | 748 | 0.0 | 945 |
| MS.gene45784.t1 | AT1G22870 | 61.699 | 718 | 221 | 11 | 226 | 923 | 9 | 692 | 0.0 | 833 |
| MS.gene45784.t1 | AT2G40730 | 22.419 | 620 | 391 | 17 | 36 | 626 | 18 | 576 | 3.55e-20 | 96.7 |
Find 245 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAGACTCCACAGAATTT+TGG | 0.144459 | 4.1:-69840593 | None:intergenic |
| CTTGACAAAGAGCATATATT+TGG | 0.211975 | 4.1:-69839826 | None:intergenic |
| CAAAATAATTTGCCCTTATC+TGG | 0.217176 | 4.1:+69840249 | MS.gene45784:CDS |
| TCTCTTCAAATGAATCTTTC+AGG | 0.221457 | 4.1:+69833368 | MS.gene45784:CDS |
| CACTGAGCAGCCACCCCTTT+TGG | 0.226191 | 4.1:+69840905 | MS.gene45784:CDS |
| CTTCTCTTGGGATGCAGATT+GGG | 0.235573 | 4.1:+69840128 | MS.gene45784:CDS |
| CGTTTGGGTGCTGGATAAAA+AGG | 0.244271 | 4.1:+69828284 | MS.gene45784:CDS |
| TCTGGTCTTACCTCACAATT+TGG | 0.249950 | 4.1:+69840339 | MS.gene45784:CDS |
| GTTACGTGCTCTGCGTTTCC+TGG | 0.252212 | 4.1:+69835201 | MS.gene45784:CDS |
| TAGATGTATTAATAGAATTC+TGG | 0.257450 | 4.1:-69840182 | None:intergenic |
| GCCTGGAAACTTGGTGGATT+TGG | 0.258496 | 4.1:+69830032 | MS.gene45784:CDS |
| GGAGTTGCTGTGACTGATTC+TGG | 0.265135 | 4.1:+69840012 | MS.gene45784:CDS |
| CACCTGGGTATCAAGTTCTT+TGG | 0.281777 | 4.1:-69837274 | None:intergenic |
| TGGCCGCCTCGTGCATCTTC+TGG | 0.283391 | 4.1:+69840321 | MS.gene45784:CDS |
| GAAGAACATGTGAAATTAAA+TGG | 0.302392 | 4.1:-69837176 | None:intergenic |
| TTGGCGGGGCCCGTTGCTTT+AGG | 0.304433 | 4.1:-69840153 | None:intergenic |
| AGTATCCGGTTGTTTGCGTT+TGG | 0.312856 | 4.1:+69828268 | MS.gene45784:CDS |
| TTTGAACCTCAGAGTTCTCT+TGG | 0.315441 | 4.1:+69840666 | MS.gene45784:CDS |
| AGAGGGCGGGGAAGAGGCAG+AGG | 0.321338 | 4.1:+69840843 | MS.gene45784:CDS |
| AAGTGTTCCTAAGGATCTTA+AGG | 0.324960 | 4.1:+69828527 | MS.gene45784:CDS |
| CTCAGGAGCAGTGTAATTAA+TGG | 0.336076 | 4.1:-69832515 | None:intergenic |
| ATCTACTGAAGGACATGAAT+TGG | 0.341032 | 4.1:-69840292 | None:intergenic |
| GCTTCTCTTGGGATGCAGAT+TGG | 0.355593 | 4.1:+69840127 | MS.gene45784:CDS |
| CCTCTACCCACTGTGGTTGA+AGG | 0.358197 | 4.1:-69840825 | None:intergenic |
| CCGAGACGGATCGCGTGATT+TGG | 0.361097 | 4.1:-69828238 | None:intergenic |
| TCCTGCAGTTAACGGCCTTC+AGG | 0.362743 | 4.1:+69840056 | MS.gene45784:CDS |
| GAGAGCATCCTTTGCAAGTC+AGG | 0.364314 | 4.1:-69833349 | None:intergenic |
| GAATAGTTTGCAAGATTTCC+AGG | 0.366270 | 4.1:-69839531 | None:intergenic |
| CAACCCTTATGTGTACCCTT+GGG | 0.366688 | 4.1:+69839584 | MS.gene45784:CDS |
| GTGGGTAGAGGGCGGGGAAG+AGG | 0.367494 | 4.1:+69840837 | MS.gene45784:CDS |
| CTTGGCAGACCAATTGTTGC+TGG | 0.367793 | 4.1:-69840568 | None:intergenic |
| GGAATGGCATTAAACAAGAT+AGG | 0.370359 | 4.1:+69840501 | MS.gene45784:CDS |
| TTTGCAGGAAATGGGATTGT+TGG | 0.371651 | 4.1:+69829644 | MS.gene45784:intron |
| TTCATTAATTTGCAGGAAAT+GGG | 0.374196 | 4.1:+69829636 | MS.gene45784:intron |
| AAGGCTTGCGAGCAATTAAA+TGG | 0.376579 | 4.1:-69832606 | None:intergenic |
| CTCATCTATCCCATCGGATC+TGG | 0.376874 | 4.1:+69833324 | MS.gene45784:CDS |
| AATGTTAAATCAACTGATCT+TGG | 0.377809 | 4.1:+69840747 | MS.gene45784:CDS |
| ACCAAATCCACCAAGTTTCC+AGG | 0.381691 | 4.1:-69830033 | None:intergenic |
| GCTTCCGTTGCGAATACTCT+TGG | 0.382944 | 4.1:+69828486 | MS.gene45784:CDS |
| GGTTGTTTGCGTTTGGGTGC+TGG | 0.385110 | 4.1:+69828275 | MS.gene45784:CDS |
| AGGAGCACCACTTCTTCAGC+TGG | 0.387774 | 4.1:+69832544 | MS.gene45784:CDS |
| CGCCCTAGTGGTTCATTATC+CGG | 0.389618 | 4.1:+69840447 | MS.gene45784:CDS |
| GTATCCGGTTGTTTGCGTTT+GGG | 0.392102 | 4.1:+69828269 | MS.gene45784:CDS |
| CTGATTAGATACACCAGATA+AGG | 0.392866 | 4.1:-69840262 | None:intergenic |
| CAGACCAATTGTTGCTGGCC+TGG | 0.396129 | 4.1:-69840563 | None:intergenic |
| TTCTTGAACGGTTGTTGAAA+CGG | 0.402267 | 4.1:-69828127 | None:intergenic |
| AATAGAATTCTGGACAGAAT+TGG | 0.402583 | 4.1:-69840172 | None:intergenic |
| ACATCTAATAAATCTGTGAT+AGG | 0.404562 | 4.1:+69840198 | MS.gene45784:CDS |
| GGTTCATTATCCGGTGCATC+TGG | 0.404706 | 4.1:+69840456 | MS.gene45784:CDS |
| CATTCCTAAAATACCATTGT+TGG | 0.404823 | 4.1:-69840484 | None:intergenic |
| GTCTCCAGGCCAGCAACAAT+TGG | 0.407124 | 4.1:+69840559 | MS.gene45784:CDS |
| ACAAGCAATTCAAGCAATCT+TGG | 0.407775 | 4.1:+69840537 | MS.gene45784:CDS |
| TGCAAGTTGTTCATTCTTGT+TGG | 0.408006 | 4.1:-69840784 | None:intergenic |
| CAACCCCAAGGGTACACATA+AGG | 0.408326 | 4.1:-69839588 | None:intergenic |
| CCGCCGGTCCAGCTTTAGCC+TGG | 0.421851 | 4.1:+69828202 | MS.gene45784:CDS |
| ATAGATGAGCTAGCATTCCT+TGG | 0.421853 | 4.1:-69840624 | None:intergenic |
| TTTAACCATTGCAGAGTCTC+AGG | 0.422067 | 4.1:+69836299 | MS.gene45784:CDS |
| TACCTTGTTTATTATTAGCT+CGG | 0.424935 | 4.1:-69837044 | None:intergenic |
| CCTGTCTTAAGCACTGCTTC+TGG | 0.425601 | 4.1:+69836992 | MS.gene45784:CDS |
| AGGATCATCATCTTCAAGAT+TGG | 0.428641 | 4.1:-69840406 | None:intergenic |
| ACGTGAATCATTATCATCAT+AGG | 0.429078 | 4.1:-69837214 | None:intergenic |
| ATGTTCCACTCACAGCATAA+TGG | 0.430542 | 4.1:-69830106 | None:intergenic |
| TCGTAGTCTTGAAGAGGCTT+TGG | 0.431079 | 4.1:-69828159 | None:intergenic |
| GGGATTGTGCATGTTGTTCA+AGG | 0.431730 | 4.1:+69828414 | MS.gene45784:CDS |
| TCATAGGCTCGAACAATCAT+TGG | 0.434291 | 4.1:-69837198 | None:intergenic |
| GAGGTTCAAAGCCATTGTTC+AGG | 0.439568 | 4.1:-69840653 | None:intergenic |
| CTCTACCCACTGTGGTTGAA+GGG | 0.439883 | 4.1:-69840824 | None:intergenic |
| CTTCCGTTGCGAATACTCTT+GGG | 0.441569 | 4.1:+69828487 | MS.gene45784:CDS |
| TGGGTTCTTGAAACAAAGTC+AGG | 0.443828 | 4.1:+69840686 | MS.gene45784:CDS |
| TTGAACCTCAGAGTTCTCTT+GGG | 0.445956 | 4.1:+69840667 | MS.gene45784:CDS |
| CCAACCCTTATGTGTACCCT+TGG | 0.446020 | 4.1:+69839583 | MS.gene45784:CDS |
| ATGGTTAGGTTGAGACATCC+TGG | 0.449776 | 4.1:+69828393 | MS.gene45784:CDS |
| CTTGGTATGAGAGTGCTGTC+TGG | 0.450433 | 4.1:-69840877 | None:intergenic |
| TAAAAGCATTGTCAGATATG+TGG | 0.451916 | 4.1:+69835362 | MS.gene45784:CDS |
| AGCACCCAAACGCAAACAAC+CGG | 0.454074 | 4.1:-69828273 | None:intergenic |
| CTGGACCGGCGGAACCGATC+TGG | 0.458322 | 4.1:-69828191 | None:intergenic |
| ACGGTGCTGCTGGTTGTCCT+TGG | 0.458909 | 4.1:-69840087 | None:intergenic |
| AAACTATCTCCTGCAGTTAA+CGG | 0.459043 | 4.1:+69840048 | MS.gene45784:CDS |
| TTCAAGCAATCTTGGTCTCC+AGG | 0.459052 | 4.1:+69840545 | MS.gene45784:CDS |
| TGGATGCTGGGAAGATGGTT+AGG | 0.459231 | 4.1:+69828379 | MS.gene45784:CDS |
| AAAACTTTCCTCAGCCGCCT+TGG | 0.460360 | 4.1:-69828340 | None:intergenic |
| TTTGGCGGAGTAAAGCTTCC+AGG | 0.460959 | 4.1:-69828220 | None:intergenic |
| CATTCAGCTGTTGAGCAGTC+AGG | 0.461966 | 4.1:-69839791 | None:intergenic |
| CTTAAGACAGGGACAAGGGC+TGG | 0.463233 | 4.1:-69836980 | None:intergenic |
| CCTGTAAAATCCATTGCACT+TGG | 0.463536 | 4.1:-69833391 | None:intergenic |
| GATTGGGGTCCTAAAGCAAC+GGG | 0.466852 | 4.1:+69840144 | MS.gene45784:CDS |
| ACCATTCCCTTAAGATCCTT+AGG | 0.469358 | 4.1:-69828534 | None:intergenic |
| TTCAAGATTGGATGTGGATG+AGG | 0.470079 | 4.1:-69840394 | None:intergenic |
| TTCTTACAAGCATGTGGTCC+AGG | 0.474406 | 4.1:-69835219 | None:intergenic |
| CACCACTTTGTGCAGAACTT+AGG | 0.475258 | 4.1:+69836241 | MS.gene45784:CDS |
| TAAAGCTTCCAGGCTAAAGC+TGG | 0.478668 | 4.1:-69828210 | None:intergenic |
| ACCACAGTGGGTAGAGGGCG+GGG | 0.480384 | 4.1:+69840831 | MS.gene45784:CDS |
| AACCACAGTGGGTAGAGGGC+GGG | 0.487860 | 4.1:+69840830 | MS.gene45784:CDS |
| GAATAAGATGGGCATGGTTG+TGG | 0.490924 | 4.1:-69829713 | None:intergenic |
| TGTGCATGTTGTTCAAGGGT+TGG | 0.491272 | 4.1:+69828419 | MS.gene45784:CDS |
| GTGGTGCTCCTCACCATCTC+AGG | 0.494154 | 4.1:-69832532 | None:intergenic |
| AGTGTTCCTAAGGATCTTAA+GGG | 0.495954 | 4.1:+69828528 | MS.gene45784:CDS |
| CCTTCAACCACAGTGGGTAG+AGG | 0.497028 | 4.1:+69840825 | MS.gene45784:CDS |
| AACCCCAAGGGTACACATAA+GGG | 0.498164 | 4.1:-69839587 | None:intergenic |
| TTCTCTTGGGATGCAGATTG+GGG | 0.498334 | 4.1:+69840129 | MS.gene45784:CDS |
| GTTACCCCAACAAATCCAAA+AGG | 0.498720 | 4.1:-69840920 | None:intergenic |
| GATTTGATTAGGATGGATGC+TGG | 0.499807 | 4.1:+69828366 | MS.gene45784:CDS |
| CAAAATTCTGTGGAGTCTAT+CGG | 0.499919 | 4.1:+69840594 | MS.gene45784:CDS |
| TTATCACATTGAGTGGAGCC+TGG | 0.500197 | 4.1:+69830015 | MS.gene45784:CDS |
| ACCTGAAGGCCGTTAACTGC+AGG | 0.504180 | 4.1:-69840057 | None:intergenic |
| TGATTCACGTTTACAAGAAG+AGG | 0.505008 | 4.1:+69837227 | MS.gene45784:CDS |
| TGGATTGACCAAGGCGGCTG+AGG | 0.505029 | 4.1:+69828332 | MS.gene45784:CDS |
| TGGCTGCTCAGTGCTTGACT+TGG | 0.506533 | 4.1:-69840895 | None:intergenic |
| TGTTGAAGCAACGGTGCTGC+TGG | 0.506869 | 4.1:-69840097 | None:intergenic |
| TCCTTGGAGCTTCCACCTGA+AGG | 0.508716 | 4.1:-69840071 | None:intergenic |
| ATCTTTCAGGCCAAGTGCAA+TGG | 0.508729 | 4.1:+69833381 | MS.gene45784:CDS |
| CTCCACCAGATCGGTTCCGC+CGG | 0.511316 | 4.1:+69828186 | MS.gene45784:CDS |
| TGATTAGATACACCAGATAA+GGG | 0.512264 | 4.1:-69840261 | None:intergenic |
| GTCTCGGCAGCATCAGTATC+CGG | 0.513495 | 4.1:+69828254 | MS.gene45784:CDS |
| TTGAGTGGAGCCTGGAAACT+TGG | 0.514583 | 4.1:+69830023 | MS.gene45784:CDS |
| AGACGGATCGCGTGATTTGG+CGG | 0.516807 | 4.1:-69828235 | None:intergenic |
| CTTCCAGGCTAAAGCTGGAC+CGG | 0.517010 | 4.1:-69828205 | None:intergenic |
| TTCCCGTGTATTACGATACA+AGG | 0.517523 | 4.1:+69835396 | MS.gene45784:CDS |
| CACAATTTGGTGATACTGAA+AGG | 0.517575 | 4.1:+69840352 | MS.gene45784:CDS |
| ATCATCTTCAAGATTGGATG+TGG | 0.518956 | 4.1:-69840400 | None:intergenic |
| ACTTGATAAACATGCTGTCC+TGG | 0.519009 | 4.1:+69839513 | MS.gene45784:CDS |
| TGGACCGGTTACTTCTTGAA+CGG | 0.519539 | 4.1:-69828139 | None:intergenic |
| ACAACCGTTCAAGAAGTAAC+CGG | 0.522354 | 4.1:+69828135 | MS.gene45784:CDS |
| TCCTAAGGATCTTAAGGGAA+TGG | 0.524386 | 4.1:+69828533 | MS.gene45784:CDS |
| CGTGGAGGCCAATCAGCAAA+AGG | 0.525518 | 4.1:-69840426 | None:intergenic |
| AAAACCATTGGTAGAATCAT+CGG | 0.526198 | 4.1:-69836279 | None:intergenic |
| GCAGGAAATGGGATTGTTGG+AGG | 0.526955 | 4.1:+69829647 | MS.gene45784:intron |
| GTTGTCGGAGGCGAGATTGA+AGG | 0.527063 | 4.1:+69828308 | MS.gene45784:CDS |
| TAGATGAGCTAGCATTCCTT+GGG | 0.527101 | 4.1:-69840623 | None:intergenic |
| TAGGATGGATGCTGGGAAGA+TGG | 0.527113 | 4.1:+69828374 | MS.gene45784:CDS |
| GTCAGGAGTGGCATAAGCAA+TGG | 0.528064 | 4.1:-69839774 | None:intergenic |
| TAATGTTCAAAGTGTTCCTA+AGG | 0.530222 | 4.1:+69828518 | MS.gene45784:CDS |
| TGCAGATTAGATGAGTCACC+AGG | 0.531071 | 4.1:-69830077 | None:intergenic |
| ACTTCAGATTGCGGAGTCGT+TGG | 0.532035 | 4.1:+69829683 | MS.gene45784:CDS |
| CCAGAAGCAGTGCTTAAGAC+AGG | 0.532674 | 4.1:-69836992 | None:intergenic |
| ATGGATGTTACTTGACCCAC+AGG | 0.532744 | 4.1:-69840225 | None:intergenic |
| GGGTATCAAGTTCTTTGGCA+AGG | 0.533522 | 4.1:-69837269 | None:intergenic |
| GTCGGTTGACCATGTCTCCT+AGG | 0.533647 | 4.1:-69839492 | None:intergenic |
| TCTGCAATGGTTAAAACCAT+TGG | 0.534089 | 4.1:-69836291 | None:intergenic |
| ACAACCGATGATTCTACCAA+TGG | 0.534149 | 4.1:+69836275 | MS.gene45784:CDS |
| ATCTGGTTCCTGACTTGCAA+AGG | 0.535675 | 4.1:+69833341 | MS.gene45784:CDS |
| GATAGATGAGAAAGCATCAC+TGG | 0.538809 | 4.1:-69833311 | None:intergenic |
| CTATAGCTCGATGAATAAGA+TGG | 0.539156 | 4.1:-69829725 | None:intergenic |
| AACCCTTATGTGTACCCTTG+GGG | 0.539200 | 4.1:+69839585 | MS.gene45784:CDS |
| GAAAGGAAAACAGTTGCAGC+TGG | 0.543442 | 4.1:+69840369 | MS.gene45784:CDS |
| TGAACAACATGCACAATCCC+AGG | 0.543969 | 4.1:-69828411 | None:intergenic |
| CCAAATCACGCGATCCGTCT+CGG | 0.544998 | 4.1:+69828238 | MS.gene45784:CDS |
| CTGCAACAACAATGTCAAGA+TGG | 0.545814 | 4.1:+69832636 | MS.gene45784:CDS |
| AAATAGAATTTGCAACCCCA+AGG | 0.546112 | 4.1:-69839600 | None:intergenic |
| GACCGGCGGAACCGATCTGG+TGG | 0.547048 | 4.1:-69828188 | None:intergenic |
| TTACCCCAACAAATCCAAAA+GGG | 0.549849 | 4.1:-69840919 | None:intergenic |
| TCTACCCACTGTGGTTGAAG+GGG | 0.551211 | 4.1:-69840823 | None:intergenic |
| GCAATTTCTTCTCAGAACCC+TGG | 0.553112 | 4.1:+69830059 | MS.gene45784:CDS |
| GTCTTGAAGAGGCTTTGGAC+CGG | 0.553805 | 4.1:-69828154 | None:intergenic |
| GGATTGTGCATGTTGTTCAA+GGG | 0.554489 | 4.1:+69828415 | MS.gene45784:CDS |
| GAATGGCATTAAACAAGATA+GGG | 0.554755 | 4.1:+69840502 | MS.gene45784:CDS |
| TGCAGTTAACGGCCTTCAGG+TGG | 0.554887 | 4.1:+69840059 | MS.gene45784:CDS |
| CTTCAACCACAGTGGGTAGA+GGG | 0.556677 | 4.1:+69840826 | MS.gene45784:CDS |
| CGGAACCGATCTGGTGGAGA+AGG | 0.557316 | 4.1:-69828182 | None:intergenic |
| AGGGTACACATAAGGGTTGG+AGG | 0.558649 | 4.1:-69839580 | None:intergenic |
| TGCTTTCTCATCTATCCCAT+CGG | 0.560584 | 4.1:+69833318 | MS.gene45784:CDS |
| GGTATCAAGTTCTTTGGCAA+GGG | 0.560592 | 4.1:-69837268 | None:intergenic |
| GTTGGAATTTCCAGATGCAC+CGG | 0.560597 | 4.1:-69840466 | None:intergenic |
| TTTGCTTTGCCTAGGAGACA+TGG | 0.560638 | 4.1:+69839483 | MS.gene45784:CDS |
| AGAATTCTGGACAGAATTGG+CGG | 0.561941 | 4.1:-69840169 | None:intergenic |
| GGAGCACCACTTCTTCAGCT+GGG | 0.562071 | 4.1:+69832545 | MS.gene45784:CDS |
| GAATTCTGGACAGAATTGGC+GGG | 0.562938 | 4.1:-69840168 | None:intergenic |
| CAACCACAGTGGGTAGAGGG+CGG | 0.565663 | 4.1:+69840829 | MS.gene45784:CDS |
| TAATTACACTGCTCCTGAGA+TGG | 0.566358 | 4.1:+69832519 | MS.gene45784:CDS |
| CTTGCGAGCAATTAAATGGT+AGG | 0.568377 | 4.1:-69832602 | None:intergenic |
| GTCAATGCTTTGCTTTGCCT+AGG | 0.569127 | 4.1:+69839475 | MS.gene45784:CDS |
| CGCCGAGCTAATAATAAACA+AGG | 0.570376 | 4.1:+69837042 | MS.gene45784:CDS |
| AGTCTATCGGTTTGAACCCA+AGG | 0.572021 | 4.1:+69840607 | MS.gene45784:CDS |
| GCATGGTTTACTTCAGATTG+CGG | 0.574438 | 4.1:+69829674 | MS.gene45784:CDS |
| AAGTCAGGAACCAGATCCGA+TGG | 0.578931 | 4.1:-69833334 | None:intergenic |
| GGATTGTTGGAGGTGAAGCA+TGG | 0.582250 | 4.1:+69829657 | MS.gene45784:CDS |
| CTACCCACTGTGGTTGAAGG+GGG | 0.582446 | 4.1:-69840822 | None:intergenic |
| ATAGCACCCAGCTGAAGAAG+TGG | 0.584812 | 4.1:-69832551 | None:intergenic |
| CTAAGTTCTGCACAAAGTGG+TGG | 0.585328 | 4.1:-69836240 | None:intergenic |
| TCGGAGGCGAGATTGAAGGC+TGG | 0.591058 | 4.1:+69828312 | MS.gene45784:CDS |
| CCAGGCTAAAGCTGGACCGG+CGG | 0.591205 | 4.1:-69828202 | None:intergenic |
| TCAAAATTCTTACAAGCATG+TGG | 0.591284 | 4.1:-69835225 | None:intergenic |
| GCACCGGATAATGAACCACT+AGG | 0.592652 | 4.1:-69840450 | None:intergenic |
| TGCCAAAGAACTTGATACCC+AGG | 0.592784 | 4.1:+69837272 | MS.gene45784:CDS |
| GATGAAACAACATTTGATGC+CGG | 0.594371 | 4.1:-69840714 | None:intergenic |
| GGACAGCATGTTTATCAAGT+CGG | 0.595468 | 4.1:-69839510 | None:intergenic |
| GCCTTCAGGTGGAAGCTCCA+AGG | 0.597591 | 4.1:+69840070 | MS.gene45784:CDS |
| CAGTGCTTAAGACAGGGACA+AGG | 0.599466 | 4.1:-69836985 | None:intergenic |
| TTCAGTATCACCAAATTGTG+AGG | 0.603278 | 4.1:-69840349 | None:intergenic |
| CCAAGGGTACACATAAGGGT+TGG | 0.603498 | 4.1:-69839583 | None:intergenic |
| TGGTTAGGTTGAGACATCCT+GGG | 0.607429 | 4.1:+69828394 | MS.gene45784:CDS |
| TTGTTGTTGCAGTCAAACAA+AGG | 0.610321 | 4.1:-69832625 | None:intergenic |
| GATAATGAACCACTAGGGCG+TGG | 0.610882 | 4.1:-69840444 | None:intergenic |
| CTCGATGAATAAGATGGGCA+TGG | 0.611719 | 4.1:-69829719 | None:intergenic |
| GATTGGCCTCCACGCCCTAG+TGG | 0.614962 | 4.1:+69840435 | MS.gene45784:CDS |
| GGATACTGATGCTGCCGAGA+CGG | 0.614983 | 4.1:-69828252 | None:intergenic |
| TAATTAATGGATGGCTGAAG+TGG | 0.616939 | 4.1:-69832502 | None:intergenic |
| AATAGAATTTGCAACCCCAA+GGG | 0.617052 | 4.1:-69839599 | None:intergenic |
| TGCCAAGTCCCAAAATTCTG+TGG | 0.619306 | 4.1:+69840584 | MS.gene45784:CDS |
| AGTGGAGCCTGGAAACTTGG+TGG | 0.619812 | 4.1:+69830026 | MS.gene45784:CDS |
| TACGACCTTCTCCACCAGAT+CGG | 0.620628 | 4.1:+69828177 | MS.gene45784:CDS |
| AGCTGTTGAGCAGTCAGGAG+TGG | 0.622583 | 4.1:-69839786 | None:intergenic |
| GGAGCAGTGTAATTAATGGA+TGG | 0.623150 | 4.1:-69832511 | None:intergenic |
| TATAGCTCGATGAATAAGAT+GGG | 0.623474 | 4.1:-69829724 | None:intergenic |
| ATACCTTGTATCGTAATACA+CGG | 0.624670 | 4.1:-69835399 | None:intergenic |
| AGATTGGGGTCCTAAAGCAA+CGG | 0.625317 | 4.1:+69840143 | MS.gene45784:CDS |
| CCCAACAAATCCAAAAGGGG+TGG | 0.627609 | 4.1:-69840915 | None:intergenic |
| GTCCTTCAGTAGATATAGAG+TGG | 0.630972 | 4.1:+69840301 | MS.gene45784:CDS |
| GTTCTGCACAAAGTGGTGGA+AGG | 0.631669 | 4.1:-69836236 | None:intergenic |
| CAGAAGCAGTGCTTAAGACA+GGG | 0.633050 | 4.1:-69836991 | None:intergenic |
| GCATCTGGAAATTCCAACAA+TGG | 0.635190 | 4.1:+69840471 | MS.gene45784:CDS |
| ACACTGCTCCTGAGATGGTG+AGG | 0.638853 | 4.1:+69832524 | MS.gene45784:CDS |
| TCATCGAGCTATAGCACCCG+AGG | 0.639167 | 4.1:+69829734 | MS.gene45784:CDS |
| GGATGAGAGTAAGAATGCGA+TGG | 0.639503 | 4.1:+69828440 | MS.gene45784:CDS |
| AATTCTGGACAGAATTGGCG+GGG | 0.640042 | 4.1:-69840167 | None:intergenic |
| AGAAGGTCGTAGTCTTGAAG+AGG | 0.641764 | 4.1:-69828165 | None:intergenic |
| GGCCACTCTATATCTACTGA+AGG | 0.646021 | 4.1:-69840303 | None:intergenic |
| TACCTTGTATCGTAATACAC+GGG | 0.650881 | 4.1:-69835398 | None:intergenic |
| ATTTGATTAGGATGGATGCT+GGG | 0.651192 | 4.1:+69828367 | MS.gene45784:CDS |
| TTCCTAAGTTCTGCACAAAG+TGG | 0.656952 | 4.1:-69836243 | None:intergenic |
| TTCGCAACGGAAGCAAACAA+CGG | 0.657834 | 4.1:-69828477 | None:intergenic |
| ACATAAGGGTTGGAGGAGAG+CGG | 0.662635 | 4.1:-69839573 | None:intergenic |
| GAGTAAGAATGCGATGGCGA+TGG | 0.666330 | 4.1:+69828446 | MS.gene45784:CDS |
| AATGAACCACTAGGGCGTGG+AGG | 0.667047 | 4.1:-69840441 | None:intergenic |
| AGTGCTTAAGACAGGGACAA+GGG | 0.667307 | 4.1:-69836984 | None:intergenic |
| TACCCCAACAAATCCAAAAG+GGG | 0.667620 | 4.1:-69840918 | None:intergenic |
| ATCTGTGATAGGAAACCCTG+TGG | 0.670211 | 4.1:+69840209 | MS.gene45784:CDS |
| AGTCAGGAACCAGATCCGAT+GGG | 0.671346 | 4.1:-69833333 | None:intergenic |
| TAGTACCTGAGACTCTGCAA+TGG | 0.674895 | 4.1:-69836304 | None:intergenic |
| ATTGAAGGCTGGATTGACCA+AGG | 0.675287 | 4.1:+69828323 | MS.gene45784:CDS |
| TCTATCAGTAACCTGAACAA+TGG | 0.676581 | 4.1:+69840642 | MS.gene45784:CDS |
| ACTGAAAACAACAGTTGCTG+CGG | 0.682367 | 4.1:+69838332 | MS.gene45784:CDS |
| CACCGGATAATGAACCACTA+GGG | 0.684290 | 4.1:-69840449 | None:intergenic |
| CTTCCCAAGAGTATTCGCAA+CGG | 0.694318 | 4.1:-69828490 | None:intergenic |
| TCCCCGCCCTCTACCCACTG+TGG | 0.700815 | 4.1:-69840832 | None:intergenic |
| TGGATGTTACTTGACCCACA+GGG | 0.701888 | 4.1:-69840224 | None:intergenic |
| GCAGATTAGATGAGTCACCA+GGG | 0.717095 | 4.1:-69830076 | None:intergenic |
| AGACCAGAAGATGCACGAGG+CGG | 0.718681 | 4.1:-69840324 | None:intergenic |
| GACTGATTCTGGAATCCCAG+AGG | 0.719882 | 4.1:+69840023 | MS.gene45784:CDS |
| TCTGTGATAGGAAACCCTGT+GGG | 0.720294 | 4.1:+69840210 | MS.gene45784:CDS |
| AGTAAGATAGAAGAGAAGCG+AGG | 0.733585 | 4.1:+69839991 | MS.gene45784:intron |
| AGTGCTAGTCCATGAACACG+TGG | 0.738043 | 4.1:-69838312 | None:intergenic |
| AAGAACCCAAGAGAACTCTG+AGG | 0.741155 | 4.1:-69840672 | None:intergenic |
| GTAAGACCAGAAGATGCACG+AGG | 0.776735 | 4.1:-69840327 | None:intergenic |
| GAAGGCTGGATTGACCAAGG+CGG | 0.788673 | 4.1:+69828326 | MS.gene45784:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 69828075 | 69840941 | 69828075 | ID=MS.gene45784 |
| chr4.1 | mRNA | 69828075 | 69840941 | 69828075 | ID=MS.gene45784.t1;Parent=MS.gene45784 |
| chr4.1 | exon | 69828075 | 69828554 | 69828075 | ID=MS.gene45784.t1.exon1;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69828075 | 69828554 | 69828075 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69829651 | 69829755 | 69829651 | ID=MS.gene45784.t1.exon2;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69829651 | 69829755 | 69829651 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69830008 | 69830115 | 69830008 | ID=MS.gene45784.t1.exon3;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69830008 | 69830115 | 69830008 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69832475 | 69832657 | 69832475 | ID=MS.gene45784.t1.exon4;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69832475 | 69832657 | 69832475 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69833286 | 69833412 | 69833286 | ID=MS.gene45784.t1.exon5;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69833286 | 69833412 | 69833286 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69835173 | 69835234 | 69835173 | ID=MS.gene45784.t1.exon6;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69835173 | 69835234 | 69835173 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69835331 | 69835417 | 69835331 | ID=MS.gene45784.t1.exon7;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69835331 | 69835417 | 69835331 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69836234 | 69836320 | 69836234 | ID=MS.gene45784.t1.exon8;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69836234 | 69836320 | 69836234 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69836950 | 69837063 | 69836950 | ID=MS.gene45784.t1.exon9;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69836950 | 69837063 | 69836950 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69837165 | 69837293 | 69837165 | ID=MS.gene45784.t1.exon10;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69837165 | 69837293 | 69837165 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69838291 | 69838353 | 69838291 | ID=MS.gene45784.t1.exon11;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69838291 | 69838353 | 69838291 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69839469 | 69839630 | 69839469 | ID=MS.gene45784.t1.exon12;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69839469 | 69839630 | 69839469 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69839741 | 69839859 | 69839741 | ID=MS.gene45784.t1.exon13;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69839741 | 69839859 | 69839741 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| chr4.1 | exon | 69839993 | 69840941 | 69839993 | ID=MS.gene45784.t1.exon14;Parent=MS.gene45784.t1 |
| chr4.1 | CDS | 69839993 | 69840941 | 69839993 | ID=cds.MS.gene45784.t1;Parent=MS.gene45784.t1 |
| Gene Sequence |
| Protein sequence |
