Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45963.t1 | XP_024625230.1 | 72.2 | 263 | 58 | 5 | 1 | 261 | 1 | 250 | 1.80E-85 | 326.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45963.t1 | F4K4T3 | 33.6 | 143 | 78 | 6 | 2 | 136 | 33 | 166 | 2.3e-09 | 64.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45963.t1 | A0A396GZ39 | 72.2 | 263 | 58 | 5 | 1 | 261 | 1 | 250 | 1.3e-85 | 326.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene45963 | 0.813519 | 2.46E-51 | -1.69E-46 |
| MS.gene05422 | MS.gene45963 | 0.806776 | 6.98E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene45963 | 0.805647 | 1.21E-49 | -1.69E-46 |
| MS.gene060257 | MS.gene45963 | 0.80195 | 7.07E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45963.t1 | MTR_7g066640 | 75.521 | 192 | 39 | 3 | 19 | 210 | 16 | 199 | 7.07e-83 | 250 |
| MS.gene45963.t1 | MTR_7g066600 | 60.526 | 190 | 48 | 5 | 1 | 171 | 3 | 184 | 2.05e-60 | 192 |
| MS.gene45963.t1 | MTR_0474s0020 | 50.174 | 287 | 76 | 6 | 1 | 277 | 1 | 230 | 7.60e-60 | 192 |
| MS.gene45963.t1 | MTR_0474s0020 | 50.741 | 270 | 66 | 6 | 1 | 260 | 1 | 213 | 9.03e-56 | 184 |
| MS.gene45963.t1 | MTR_7g066620 | 57.718 | 149 | 57 | 5 | 190 | 335 | 20 | 165 | 1.57e-30 | 122 |
| MS.gene45963.t1 | MTR_4g015930 | 31.414 | 382 | 181 | 17 | 6 | 330 | 9 | 366 | 2.61e-23 | 101 |
| MS.gene45963.t1 | MTR_4g015930 | 31.414 | 382 | 181 | 17 | 6 | 330 | 9 | 366 | 3.04e-23 | 101 |
| MS.gene45963.t1 | MTR_4g015930 | 31.675 | 382 | 180 | 17 | 6 | 330 | 9 | 366 | 3.08e-23 | 101 |
| MS.gene45963.t1 | MTR_4g016850 | 32.667 | 300 | 151 | 14 | 6 | 275 | 9 | 287 | 1.24e-17 | 84.7 |
| MS.gene45963.t1 | MTR_0087s0050 | 28.134 | 359 | 207 | 14 | 14 | 332 | 24 | 371 | 9.54e-17 | 82.0 |
| MS.gene45963.t1 | MTR_4g016810 | 30.663 | 362 | 192 | 16 | 3 | 335 | 9 | 340 | 4.45e-16 | 79.7 |
| MS.gene45963.t1 | MTR_4g016870 | 30.000 | 250 | 136 | 10 | 1 | 226 | 7 | 241 | 2.09e-15 | 75.5 |
| MS.gene45963.t1 | MTR_7g014430 | 31.421 | 366 | 183 | 15 | 11 | 332 | 24 | 365 | 3.05e-15 | 77.4 |
| MS.gene45963.t1 | MTR_2g017420 | 29.570 | 372 | 205 | 17 | 5 | 332 | 13 | 371 | 1.62e-14 | 75.1 |
| MS.gene45963.t1 | MTR_6g038820 | 27.882 | 373 | 192 | 18 | 4 | 328 | 14 | 357 | 4.90e-13 | 70.1 |
| MS.gene45963.t1 | MTR_2g017470 | 28.783 | 337 | 192 | 13 | 21 | 326 | 34 | 353 | 1.13e-12 | 69.7 |
| MS.gene45963.t1 | MTR_6g016140 | 26.216 | 370 | 192 | 14 | 6 | 306 | 6 | 363 | 1.10e-11 | 66.6 |
| MS.gene45963.t1 | MTR_2g055690 | 27.697 | 343 | 178 | 13 | 20 | 306 | 31 | 359 | 1.70e-11 | 65.9 |
| MS.gene45963.t1 | MTR_6g038730 | 29.457 | 258 | 133 | 11 | 5 | 246 | 16 | 240 | 2.03e-11 | 65.9 |
| MS.gene45963.t1 | MTR_4g011860 | 29.226 | 349 | 202 | 14 | 9 | 330 | 8 | 338 | 3.47e-11 | 65.1 |
| MS.gene45963.t1 | MTR_0087s0040 | 28.530 | 347 | 200 | 15 | 21 | 334 | 4 | 335 | 4.83e-11 | 64.7 |
| MS.gene45963.t1 | MTR_4g017640 | 25.758 | 330 | 202 | 11 | 32 | 332 | 55 | 370 | 6.41e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45963.t1 | AT5G49290 | 29.487 | 312 | 173 | 10 | 21 | 300 | 4 | 300 | 3.10e-19 | 89.4 |
| MS.gene45963.t1 | AT5G49290 | 30.375 | 293 | 179 | 9 | 21 | 305 | 46 | 321 | 3.46e-19 | 89.4 |
| MS.gene45963.t1 | AT5G49290 | 30.375 | 293 | 179 | 9 | 21 | 305 | 46 | 321 | 3.69e-19 | 89.4 |
| MS.gene45963.t1 | AT5G49290 | 29.487 | 312 | 173 | 10 | 21 | 300 | 32 | 328 | 3.77e-19 | 89.4 |
| MS.gene45963.t1 | AT5G49290 | 30.375 | 293 | 179 | 9 | 21 | 305 | 32 | 307 | 4.06e-19 | 89.0 |
| MS.gene45963.t1 | AT5G49290 | 30.375 | 293 | 179 | 9 | 21 | 305 | 32 | 307 | 4.06e-19 | 89.0 |
| MS.gene45963.t1 | AT5G49290 | 30.375 | 293 | 179 | 9 | 21 | 305 | 32 | 307 | 4.06e-19 | 89.0 |
| MS.gene45963.t1 | AT5G49290 | 30.375 | 293 | 179 | 9 | 21 | 305 | 4 | 279 | 5.06e-19 | 89.0 |
| MS.gene45963.t1 | AT1G58190 | 30.303 | 330 | 189 | 13 | 21 | 330 | 28 | 336 | 1.21e-18 | 87.8 |
| MS.gene45963.t1 | AT1G58190 | 31.788 | 302 | 157 | 14 | 21 | 298 | 28 | 304 | 1.71e-17 | 84.3 |
| MS.gene45963.t1 | AT2G25470 | 28.179 | 291 | 154 | 11 | 21 | 277 | 31 | 300 | 2.26e-16 | 80.9 |
| MS.gene45963.t1 | AT2G25470 | 28.179 | 291 | 154 | 11 | 21 | 277 | 31 | 300 | 2.32e-16 | 80.9 |
| MS.gene45963.t1 | AT2G25470 | 28.179 | 291 | 154 | 11 | 21 | 277 | 13 | 282 | 2.58e-16 | 80.5 |
| MS.gene45963.t1 | AT1G58190 | 28.289 | 304 | 154 | 9 | 21 | 305 | 37 | 295 | 6.16e-16 | 79.7 |
| MS.gene45963.t1 | AT4G13920 | 27.778 | 360 | 190 | 15 | 15 | 332 | 20 | 351 | 5.86e-14 | 73.6 |
| MS.gene45963.t1 | AT3G53240 | 28.626 | 262 | 162 | 8 | 30 | 281 | 32 | 278 | 8.76e-14 | 72.8 |
| MS.gene45963.t1 | AT5G27060 | 30.392 | 306 | 153 | 13 | 3 | 271 | 16 | 298 | 1.09e-13 | 72.8 |
| MS.gene45963.t1 | AT5G27060 | 30.392 | 306 | 153 | 13 | 3 | 271 | 16 | 298 | 1.09e-13 | 72.8 |
| MS.gene45963.t1 | AT5G27060 | 30.392 | 306 | 153 | 13 | 3 | 271 | 17 | 299 | 1.12e-13 | 72.8 |
| MS.gene45963.t1 | AT1G74190 | 29.706 | 340 | 181 | 12 | 1 | 298 | 1 | 324 | 2.10e-13 | 72.0 |
| MS.gene45963.t1 | AT3G11010 | 29.568 | 301 | 189 | 10 | 33 | 332 | 75 | 353 | 3.67e-13 | 71.2 |
| MS.gene45963.t1 | AT3G11010 | 29.568 | 301 | 189 | 10 | 33 | 332 | 12 | 290 | 3.72e-13 | 70.9 |
| MS.gene45963.t1 | AT3G11010 | 28.662 | 314 | 199 | 10 | 33 | 332 | 12 | 314 | 4.54e-13 | 70.9 |
| MS.gene45963.t1 | AT3G11010 | 28.662 | 314 | 199 | 10 | 33 | 332 | 75 | 377 | 5.46e-13 | 70.5 |
| MS.gene45963.t1 | AT1G74170 | 26.984 | 378 | 192 | 13 | 21 | 330 | 27 | 388 | 8.08e-13 | 70.1 |
| MS.gene45963.t1 | AT3G53240 | 29.084 | 251 | 153 | 8 | 41 | 281 | 7 | 242 | 2.13e-12 | 68.6 |
| MS.gene45963.t1 | AT3G53240 | 29.084 | 251 | 153 | 8 | 41 | 281 | 7 | 242 | 2.13e-12 | 68.6 |
| MS.gene45963.t1 | AT1G74180 | 28.840 | 319 | 165 | 13 | 5 | 275 | 14 | 318 | 9.93e-12 | 66.6 |
| MS.gene45963.t1 | AT1G74180 | 27.619 | 315 | 169 | 12 | 9 | 275 | 1 | 304 | 2.41e-11 | 65.5 |
Find 55 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACGTTTAACATATTTAA+AGG | 0.162139 | 7.2:-44743483 | MS.gene45963:CDS |
| TTATGCAGGATTGAATAATT+TGG | 0.243162 | 7.2:-44745543 | MS.gene45963:intron |
| TTAGATTTGAATATGATAAA+TGG | 0.271525 | 7.2:-44743558 | MS.gene45963:CDS |
| ATCTTTGAAGATTGCAAAAT+CGG | 0.284519 | 7.2:+44745693 | None:intergenic |
| GTCTCTAACGTTATCTGATA+TGG | 0.292253 | 7.2:-44745441 | MS.gene45963:CDS |
| TTTAAAGGAACAATTCTTCC+TGG | 0.330535 | 7.2:-44743468 | MS.gene45963:CDS |
| TACATGCATTCCCGTCTATT+AGG | 0.342927 | 7.2:-44743515 | MS.gene45963:CDS |
| GAACTGCATTTGTCTTTCAT+TGG | 0.343503 | 7.2:-44745115 | MS.gene45963:CDS |
| TTCATCAAAGTTGCTACATC+TGG | 0.354088 | 7.2:-44745215 | MS.gene45963:CDS |
| GCATTTGTCTTTCATTGGAT+TGG | 0.364300 | 7.2:-44745110 | MS.gene45963:CDS |
| CGCGCTTATTGCTCTGTCTT+GGG | 0.368287 | 7.2:-44745833 | MS.gene45963:CDS |
| GGTATTCTGTCTTGTTTGAA+TGG | 0.392599 | 7.2:-44745479 | MS.gene45963:CDS |
| TTGATGAGTTCTTGTACAAC+TGG | 0.397261 | 7.2:+44745636 | None:intergenic |
| GATATTGCATCTGCTCTTAG+TGG | 0.399283 | 7.2:-44744912 | MS.gene45963:CDS |
| ACTCTCGACCTATCAAGTTC+TGG | 0.402796 | 7.2:-44745664 | MS.gene45963:CDS |
| ACGCGCTTATTGCTCTGTCT+TGG | 0.407546 | 7.2:-44745834 | MS.gene45963:CDS |
| GATCTCAAGATTATTCAATA+TGG | 0.409474 | 7.2:+44744968 | None:intergenic |
| AGTTAAGCACTTTGAAAAGT+AGG | 0.416079 | 7.2:+44745719 | None:intergenic |
| ACTGTCATTGAAGTTGTTGT+TGG | 0.424683 | 7.2:+44744935 | None:intergenic |
| GAGGGGATTCACATCTTTGA+AGG | 0.444097 | 7.2:-44745137 | MS.gene45963:CDS |
| CTTGAAGTGGTGTGTAGTGA+TGG | 0.448181 | 7.2:-44745877 | MS.gene45963:CDS |
| ATCAAGAAATCTAAGCAGAT+TGG | 0.452436 | 7.2:-44743592 | MS.gene45963:CDS |
| TTGTAAACTTAAACTCTTGA+GGG | 0.461582 | 7.2:+44744881 | None:intergenic |
| TGGATATTCCAGAACTTGAT+AGG | 0.474623 | 7.2:+44745656 | None:intergenic |
| GTTAAGCACTTTGAAAAGTA+GGG | 0.487697 | 7.2:+44745720 | None:intergenic |
| GAGTATATGACTTCATTTCA+AGG | 0.515185 | 7.2:-44745419 | MS.gene45963:intron |
| GTCGATTTAATTGTTCGTGA+AGG | 0.520612 | 7.2:-44744274 | MS.gene45963:intron |
| AATAATTTCAAGAATGCTAT+CGG | 0.524101 | 7.2:-44745500 | MS.gene45963:CDS |
| AAAATCGAGAATCTTTAAGC+TGG | 0.525042 | 7.2:+44744312 | None:intergenic |
| CTGGAGTTCCTTGACATAAG+TGG | 0.527979 | 7.2:-44745196 | MS.gene45963:CDS |
| AGTTGTTGTTGGAGAGGTCG+AGG | 0.537093 | 7.2:+44744946 | None:intergenic |
| ATGCATTCCCGTCTATTAGG+AGG | 0.540661 | 7.2:-44743512 | MS.gene45963:CDS |
| CTTGTAAACTTAAACTCTTG+AGG | 0.547066 | 7.2:+44744880 | None:intergenic |
| AAGTAAGCCTCCTAATAGAC+GGG | 0.548911 | 7.2:+44743505 | None:intergenic |
| TGAAATCCTGCTATCACTGA+GGG | 0.555949 | 7.2:-44745155 | MS.gene45963:CDS |
| TGAATCCCCTCAGTGATAGC+AGG | 0.558658 | 7.2:+44745149 | None:intergenic |
| ATTGAATGCAACACCACCAC+AGG | 0.559957 | 7.2:-44745775 | MS.gene45963:CDS |
| AAAGTAAGCCTCCTAATAGA+CGG | 0.560494 | 7.2:+44743504 | None:intergenic |
| TAAGATGCATTATTACCTCC+AGG | 0.560606 | 7.2:+44743450 | None:intergenic |
| TGGTGTGTAGTGATGGGTGT+TGG | 0.566314 | 7.2:-44745870 | MS.gene45963:CDS |
| TGTAATTGCCACTTATGTCA+AGG | 0.568712 | 7.2:+44745188 | None:intergenic |
| TTGAAGTGGTGTGTAGTGAT+GGG | 0.583600 | 7.2:-44745876 | MS.gene45963:CDS |
| CATTGAAGTTGTTGTTGGAG+AGG | 0.584944 | 7.2:+44744940 | None:intergenic |
| AGTTGTACAAGAACTCATCA+AGG | 0.606889 | 7.2:-44745634 | MS.gene45963:intron |
| GACTCAGATCTTCATATACA+AGG | 0.612568 | 7.2:-44745088 | MS.gene45963:intron |
| AACCGTGACTCTTCCTGTGG+TGG | 0.614779 | 7.2:+44745762 | None:intergenic |
| AAAGGAACAATTCTTCCTGG+AGG | 0.623580 | 7.2:-44743465 | MS.gene45963:CDS |
| AAGCACTTTGAAAAGTAGGG+TGG | 0.623942 | 7.2:+44745723 | None:intergenic |
| GATAACCGTGACTCTTCCTG+TGG | 0.655395 | 7.2:+44745759 | None:intergenic |
| CACCACCACAGGAAGAGTCA+CGG | 0.661598 | 7.2:-44745764 | MS.gene45963:CDS |
| GCTCTGTCTTGGGTAAACAA+TGG | 0.666055 | 7.2:-44745823 | MS.gene45963:CDS |
| ATGAAATCCTGCTATCACTG+AGG | 0.689492 | 7.2:-44745156 | MS.gene45963:CDS |
| ATGGTACTGATTGTTGTGAG+TGG | 0.709645 | 7.2:-44745804 | MS.gene45963:CDS |
| GAAATCCTGCTATCACTGAG+GGG | 0.715666 | 7.2:-44745154 | MS.gene45963:CDS |
| ACTGATTGTTGTGAGTGGCA+AGG | 0.724220 | 7.2:-44745799 | MS.gene45963:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATCATATATGATTAG+AGG | + | chr7.2:44744595-44744614 | None:intergenic | 15.0% |
| !! | TAATTTACATATTATTATGC+AGG | - | chr7.2:44743796-44743815 | MS.gene45963:intron | 15.0% |
| !! | TATTTGAATTTAATGTGTAT+TGG | - | chr7.2:44745195-44745214 | MS.gene45963:CDS | 15.0% |
| !! | TTAGATTTGAATATGATAAA+TGG | - | chr7.2:44745795-44745814 | MS.gene45963:CDS | 15.0% |
| !!! | AATTTTGTATGATTAAAACA+AGG | - | chr7.2:44745372-44745391 | MS.gene45963:intron | 15.0% |
| !!! | ATTTTGTATGATTAAAACAA+GGG | - | chr7.2:44745373-44745392 | MS.gene45963:intron | 15.0% |
| !!! | GTTTTTGTTTTAAAAACATA+TGG | - | chr7.2:44744568-44744587 | MS.gene45963:intron | 15.0% |
| !! | AAAGTAAAAAATTGTATGCT+TGG | + | chr7.2:44745598-44745617 | None:intergenic | 20.0% |
| !! | AATAAAAAGTAGAACACATT+TGG | + | chr7.2:44745299-44745318 | None:intergenic | 20.0% |
| !! | AATAATTTCAAGAATGCTAT+CGG | - | chr7.2:44743853-44743872 | MS.gene45963:intron | 20.0% |
| !! | AATATTATTTCATCCCTAAA+CGG | - | chr7.2:44744684-44744703 | MS.gene45963:intron | 20.0% |
| !! | AGCTACATATCTTAATAAAA+TGG | + | chr7.2:44744319-44744338 | None:intergenic | 20.0% |
| !! | GCTACATATCTTAATAAAAT+GGG | + | chr7.2:44744318-44744337 | None:intergenic | 20.0% |
| !! | TTAAGAAAGAAAACTAAAAC+TGG | + | chr7.2:44743970-44743989 | None:intergenic | 20.0% |
| !! | TTGACGTTTAACATATTTAA+AGG | - | chr7.2:44745870-44745889 | MS.gene45963:CDS | 20.0% |
| !!! | TTCAAACAAAAGATAACTTT+TGG | - | chr7.2:44744923-44744942 | MS.gene45963:CDS | 20.0% |
| ! | ACAAAAACGACAAAAAAAAG+AGG | + | chr7.2:44744556-44744575 | None:intergenic | 25.0% |
| ! | GATCTCAAGATTATTCAATA+TGG | + | chr7.2:44744388-44744407 | None:intergenic | 25.0% |
| ! | GTATTCAACTTACATTTAGA+TGG | - | chr7.2:44745255-44745274 | MS.gene45963:CDS | 25.0% |
| ! | TATTAAGATATGTAGCTAAC+TGG | - | chr7.2:44744322-44744341 | MS.gene45963:CDS | 25.0% |
| ! | TGTTAGATATATCAAAACTG+AGG | - | chr7.2:44744619-44744638 | MS.gene45963:intron | 25.0% |
| ! | TTAAGTTTCAACAACTTGAA+AGG | - | chr7.2:44744732-44744751 | MS.gene45963:intron | 25.0% |
| ! | TTATGCAGGATTGAATAATT+TGG | - | chr7.2:44743810-44743829 | MS.gene45963:intron | 25.0% |
| ! | TTGTAAACTTAAACTCTTGA+GGG | + | chr7.2:44744475-44744494 | None:intergenic | 25.0% |
| !! | AAACGTACTTACATTTTTCA+GGG | - | chr7.2:44745736-44745755 | MS.gene45963:CDS | 25.0% |
| !! | ATCTTTGAAGATTGCAAAAT+CGG | + | chr7.2:44743663-44743682 | None:intergenic | 25.0% |
| !!! | AACTCAACATTTGTTTTAAG+AGG | + | chr7.2:44745709-44745728 | None:intergenic | 25.0% |
| !!! | TATCTTTTGTTTGATCATCA+TGG | - | chr7.2:44744845-44744864 | MS.gene45963:intron | 25.0% |
| !!! | TTTCTTAGAATTTGTTTTCG+TGG | + | chr7.2:44745411-44745430 | None:intergenic | 25.0% |
| !!! | TTTTATTTGTTAAATGCACC+TGG | + | chr7.2:44745224-44745243 | None:intergenic | 25.0% |
| AAAATCGAGAATCTTTAAGC+TGG | + | chr7.2:44745044-44745063 | None:intergenic | 30.0% | |
| ATCAAGAAATCTAAGCAGAT+TGG | - | chr7.2:44745761-44745780 | MS.gene45963:CDS | 30.0% | |
| ATCATATCTACAATTGATGC+AGG | + | chr7.2:44744901-44744920 | None:intergenic | 30.0% | |
| ATCCTGTAAAACGTAAATGT+CGG | + | chr7.2:44745009-44745028 | None:intergenic | 30.0% | |
| ATTTGTGACTCTTAAATTCG+TGG | - | chr7.2:44745672-44745691 | MS.gene45963:CDS | 30.0% | |
| CTTGTAAACTTAAACTCTTG+AGG | + | chr7.2:44744476-44744495 | None:intergenic | 30.0% | |
| GAGTATATGACTTCATTTCA+AGG | - | chr7.2:44743934-44743953 | MS.gene45963:intron | 30.0% | |
| GTAAAAAATTGTATGCTTGG+TGG | + | chr7.2:44745595-44745614 | None:intergenic | 30.0% | |
| TATATCAAAACTGAGGTCTT+TGG | - | chr7.2:44744626-44744645 | MS.gene45963:intron | 30.0% | |
| TATTGGTACCTACTATTCAT+CGG | + | chr7.2:44744087-44744106 | None:intergenic | 30.0% | |
| TGTCTGAAAAACTATGGTAT+TGG | + | chr7.2:44744104-44744123 | None:intergenic | 30.0% | |
| TTCACAAACAAGTGTAAATG+CGG | + | chr7.2:44745652-44745671 | None:intergenic | 30.0% | |
| TTTAAAGGAACAATTCTTCC+TGG | - | chr7.2:44745885-44745904 | MS.gene45963:CDS | 30.0% | |
| TTTAATTGTTCGTGAAGGTA+TGG | - | chr7.2:44745084-44745103 | MS.gene45963:intron | 30.0% | |
| TTTGTGACTCTTAAATTCGT+GGG | - | chr7.2:44745673-44745692 | MS.gene45963:CDS | 30.0% | |
| ! | ACTTTTCGTTTTACTTGAAG+TGG | - | chr7.2:44743463-44743482 | MS.gene45963:CDS | 30.0% |
| ! | AGTTAAGCACTTTGAAAAGT+AGG | + | chr7.2:44743637-44743656 | None:intergenic | 30.0% |
| ! | CAAACGTACTTACATTTTTC+AGG | - | chr7.2:44745735-44745754 | MS.gene45963:CDS | 30.0% |
| ! | GTTAAGCACTTTGAAAAGTA+GGG | + | chr7.2:44743636-44743655 | None:intergenic | 30.0% |
| ! | TAGGCAAATTTAGCTTCTTT+AGG | - | chr7.2:44745535-44745554 | MS.gene45963:CDS | 30.0% |
| AAAGAAAACTAAAACTGGCC+TGG | + | chr7.2:44743965-44743984 | None:intergenic | 35.0% | |
| AAAGTAAGCCTCCTAATAGA+CGG | + | chr7.2:44745852-44745871 | None:intergenic | 35.0% | |
| ACACTGCTAATTTAACGTGT+AGG | - | chr7.2:44744354-44744373 | MS.gene45963:intron | 35.0% | |
| ACTGTCATTGAAGTTGTTGT+TGG | + | chr7.2:44744421-44744440 | None:intergenic | 35.0% | |
| AGTTGTACAAGAACTCATCA+AGG | - | chr7.2:44743719-44743738 | MS.gene45963:intron | 35.0% | |
| CAGAACTGTCTGAAAAACTA+TGG | + | chr7.2:44744110-44744129 | None:intergenic | 35.0% | |
| GAACTGCATTTGTCTTTCAT+TGG | - | chr7.2:44744238-44744257 | MS.gene45963:intron | 35.0% | |
| GACTCAGATCTTCATATACA+AGG | - | chr7.2:44744265-44744284 | MS.gene45963:intron | 35.0% | |
| GCATTTGTCTTTCATTGGAT+TGG | - | chr7.2:44744243-44744262 | MS.gene45963:intron | 35.0% | |
| GGAAAAAACAAAGAATAGCC+TGG | - | chr7.2:44745556-44745575 | MS.gene45963:intron | 35.0% | |
| GTCTCTAACGTTATCTGATA+TGG | - | chr7.2:44743912-44743931 | MS.gene45963:intron | 35.0% | |
| TAAGATGCATTATTACCTCC+AGG | + | chr7.2:44745906-44745925 | None:intergenic | 35.0% | |
| TACATATTTGTAATGTGCGC+CGG | - | chr7.2:44744057-44744076 | MS.gene45963:intron | 35.0% | |
| TATGACTTCATTTCAAGGTG+AGG | - | chr7.2:44743939-44743958 | MS.gene45963:intron | 35.0% | |
| TGGATATTCCAGAACTTGAT+AGG | + | chr7.2:44743700-44743719 | None:intergenic | 35.0% | |
| TGTAAAACGTAAATGTCGGA+CGG | + | chr7.2:44745005-44745024 | None:intergenic | 35.0% | |
| TTCATCAAAGTTGCTACATC+TGG | - | chr7.2:44744138-44744157 | MS.gene45963:intron | 35.0% | |
| TTGATGAGTTCTTGTACAAC+TGG | + | chr7.2:44743720-44743739 | None:intergenic | 35.0% | |
| ! | ACATTTGGTAGCAGAATCTT+GGG | + | chr7.2:44745284-44745303 | None:intergenic | 35.0% |
| ! | GTCGATTTAATTGTTCGTGA+AGG | - | chr7.2:44745079-44745098 | MS.gene45963:intron | 35.0% |
| ! | TGTAATTGCCACTTATGTCA+AGG | + | chr7.2:44744168-44744187 | None:intergenic | 35.0% |
| !! | CATAGTTTTTCAGACAGTTC+TGG | - | chr7.2:44744108-44744127 | MS.gene45963:intron | 35.0% |
| !! | GAATTTGTTTTCGTGGAAAG+AGG | + | chr7.2:44745404-44745423 | None:intergenic | 35.0% |
| !! | GGTATTCTGTCTTGTTTGAA+TGG | - | chr7.2:44743874-44743893 | MS.gene45963:intron | 35.0% |
| AAAGGAACAATTCTTCCTGG+AGG | - | chr7.2:44745888-44745907 | MS.gene45963:CDS | 40.0% | |
| AACTAAGAATAGAACCCACC+TGG | - | chr7.2:44745430-44745449 | MS.gene45963:CDS | 40.0% | |
| AAGTAAGCCTCCTAATAGAC+GGG | + | chr7.2:44745851-44745870 | None:intergenic | 40.0% | |
| ACTAAGAATAGAACCCACCT+GGG | - | chr7.2:44745431-44745450 | MS.gene45963:CDS | 40.0% | |
| ATGAAATCCTGCTATCACTG+AGG | - | chr7.2:44744197-44744216 | MS.gene45963:intron | 40.0% | |
| GATATTGCATCTGCTCTTAG+TGG | - | chr7.2:44744441-44744460 | MS.gene45963:intron | 40.0% | |
| GTCTCAACTAGAGTTACACA+AGG | + | chr7.2:44745337-44745356 | None:intergenic | 40.0% | |
| TACATGCATTCCCGTCTATT+AGG | - | chr7.2:44745838-44745857 | MS.gene45963:CDS | 40.0% | |
| TGAAATCCTGCTATCACTGA+GGG | - | chr7.2:44744198-44744217 | MS.gene45963:intron | 40.0% | |
| TTGAAGTGGTGTGTAGTGAT+GGG | - | chr7.2:44743477-44743496 | MS.gene45963:CDS | 40.0% | |
| TTGCCTACCTAAATTGACAC+CGG | + | chr7.2:44745522-44745541 | None:intergenic | 40.0% | |
| TTGTACTCGTGAGTTTAGCT+CGG | - | chr7.2:44745134-44745153 | MS.gene45963:CDS | 40.0% | |
| ! | AAGCACTTTGAAAAGTAGGG+TGG | + | chr7.2:44743633-44743652 | None:intergenic | 40.0% |
| ! | AAGTCAAGAGATTTGAGACG+TGG | + | chr7.2:44744714-44744733 | None:intergenic | 40.0% |
| ! | ATTCTCTCCGGTGTCAATTT+AGG | - | chr7.2:44745512-44745531 | MS.gene45963:CDS | 40.0% |
| ! | CACATTTGGTAGCAGAATCT+TGG | + | chr7.2:44745285-44745304 | None:intergenic | 40.0% |
| ! | CATTGAAGTTGTTGTTGGAG+AGG | + | chr7.2:44744416-44744435 | None:intergenic | 40.0% |
| ! | GTCCGACATTTACGTTTTAC+AGG | - | chr7.2:44745004-44745023 | MS.gene45963:intron | 40.0% |
| ! | TTTAATGTGTATTGGCAGCC+AGG | - | chr7.2:44745203-44745222 | MS.gene45963:CDS | 40.0% |
| !! | ATGGTACTGATTGTTGTGAG+TGG | - | chr7.2:44743549-44743568 | MS.gene45963:CDS | 40.0% |
| ACTCTCGACCTATCAAGTTC+TGG | - | chr7.2:44743689-44743708 | MS.gene45963:intron | 45.0% | |
| ACTGATTGTTGTGAGTGGCA+AGG | - | chr7.2:44743554-44743573 | MS.gene45963:CDS | 45.0% | |
| ATGCATTCCCGTCTATTAGG+AGG | - | chr7.2:44745841-44745860 | MS.gene45963:CDS | 45.0% | |
| ATTGAATGCAACACCACCAC+AGG | - | chr7.2:44743578-44743597 | MS.gene45963:CDS | 45.0% | |
| CTGGAGTTCCTTGACATAAG+TGG | - | chr7.2:44744157-44744176 | MS.gene45963:intron | 45.0% | |
| CTTGAAGTGGTGTGTAGTGA+TGG | - | chr7.2:44743476-44743495 | MS.gene45963:CDS | 45.0% | |
| GAAATCCTGCTATCACTGAG+GGG | - | chr7.2:44744199-44744218 | MS.gene45963:intron | 45.0% | |
| GAGGGGATTCACATCTTTGA+AGG | - | chr7.2:44744216-44744235 | MS.gene45963:intron | 45.0% | |
| GCTCTGTCTTGGGTAAACAA+TGG | - | chr7.2:44743530-44743549 | MS.gene45963:CDS | 45.0% | |
| TGGTACCTACTATTCATCGG+TGG | + | chr7.2:44744084-44744103 | None:intergenic | 45.0% | |
| ! | ATCCTTGACTTGAGTGGCAA+CGG | - | chr7.2:44744651-44744670 | MS.gene45963:intron | 45.0% |
| ! | TCAAGAGATTTGAGACGTGG+AGG | + | chr7.2:44744711-44744730 | None:intergenic | 45.0% |
| ! | TCTCCGGTGTCAATTTAGGT+AGG | - | chr7.2:44745516-44745535 | MS.gene45963:CDS | 45.0% |
| ! | TGAGTTTAGCTCGGTTGGTA+TGG | - | chr7.2:44745143-44745162 | MS.gene45963:CDS | 45.0% |
| ! | TTGGAGATCCTTGACTTGAG+TGG | - | chr7.2:44744645-44744664 | MS.gene45963:intron | 45.0% |
| !! | ATAATATGTAAATTATATTA+TGG | + | chr7.2:44743791-44743810 | None:intergenic | 5.0% |
| AACCGTTGCCACTCAAGTCA+AGG | + | chr7.2:44744656-44744675 | None:intergenic | 50.0% | |
| ACGCGCTTATTGCTCTGTCT+TGG | - | chr7.2:44743519-44743538 | MS.gene45963:CDS | 50.0% | |
| AGAATAGAACCCACCTGGGT+TGG | - | chr7.2:44745435-44745454 | MS.gene45963:CDS | 50.0% | |
| AGTGTGCTTCTTGAGGTCTC+CGG | - | chr7.2:44745485-44745504 | MS.gene45963:CDS | 50.0% | |
| CCTACTATTCATCGGTGGTC+CGG | + | chr7.2:44744079-44744098 | None:intergenic | 50.0% | |
| CGCGCTTATTGCTCTGTCTT+GGG | - | chr7.2:44743520-44743539 | MS.gene45963:CDS | 50.0% | |
| CTTCATTTCAAGGTGAGGCC+AGG | - | chr7.2:44743944-44743963 | MS.gene45963:intron | 50.0% | |
| GATAACCGTGACTCTTCCTG+TGG | + | chr7.2:44743597-44743616 | None:intergenic | 50.0% | |
| GGACACAAGTCAATGCCACT+AGG | + | chr7.2:44745461-44745480 | None:intergenic | 50.0% | |
| TGAATCCCCTCAGTGATAGC+AGG | + | chr7.2:44744207-44744226 | None:intergenic | 50.0% | |
| ! | ACTCGTGAGTTTAGCTCGGT+TGG | - | chr7.2:44745138-44745157 | MS.gene45963:CDS | 50.0% |
| ! | AGTTGTTGTTGGAGAGGTCG+AGG | + | chr7.2:44744410-44744429 | None:intergenic | 50.0% |
| !! | AGTGGCATTGACTTGTGTCC+TGG | - | chr7.2:44745461-44745480 | MS.gene45963:CDS | 50.0% |
| !! | GTGGCATTGACTTGTGTCCT+GGG | - | chr7.2:44745462-44745481 | MS.gene45963:CDS | 50.0% |
| !! | TGGTGTGTAGTGATGGGTGT+TGG | - | chr7.2:44743483-44743502 | MS.gene45963:CDS | 50.0% |
| AACCGTGACTCTTCCTGTGG+TGG | + | chr7.2:44743594-44743613 | None:intergenic | 55.0% | |
| CACCACCACAGGAAGAGTCA+CGG | - | chr7.2:44743589-44743608 | MS.gene45963:CDS | 55.0% | |
| CCGGACCACCGATGAATAGT+AGG | - | chr7.2:44744076-44744095 | MS.gene45963:intron | 55.0% | |
| GACACCGGAGAGAATCGAAC+CGG | + | chr7.2:44745507-44745526 | None:intergenic | 55.0% | |
| GAGACGTGGAGGACCGTTTA+GGG | + | chr7.2:44744700-44744719 | None:intergenic | 55.0% | |
| TGAGACGTGGAGGACCGTTT+AGG | + | chr7.2:44744701-44744720 | None:intergenic | 55.0% | |
| ! | ACCTCAAGAAGCACACTCCC+AGG | + | chr7.2:44745482-44745501 | None:intergenic | 55.0% |
| ! | GTCTCCGGTTCGATTCTCTC+CGG | - | chr7.2:44745500-44745519 | MS.gene45963:CDS | 55.0% |
| ! | TCCTGGGAGTGTGCTTCTTG+AGG | - | chr7.2:44745478-44745497 | MS.gene45963:CDS | 55.0% |
| CAATGCCACTAGGCCAACCC+AGG | + | chr7.2:44745451-44745470 | None:intergenic | 60.0% | |
| GGTGGAATACACAGCGTGCC+AGG | + | chr7.2:44745577-44745596 | None:intergenic | 60.0% | |
| GCCACTAGGCCAACCCAGGT+GGG | + | chr7.2:44745447-44745466 | None:intergenic | 65.0% | |
| TGCCACTAGGCCAACCCAGG+TGG | + | chr7.2:44745448-44745467 | None:intergenic | 65.0% | |
| !! | ACCCACCTGGGTTGGCCTAG+TGG | - | chr7.2:44745443-44745462 | MS.gene45963:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 44743440 | 44745935 | 44743440 | ID=MS.gene45963 |
| chr7.2 | mRNA | 44743440 | 44745935 | 44743440 | ID=MS.gene45963.t1;Parent=MS.gene45963 |
| chr7.2 | exon | 44745635 | 44745935 | 44745635 | ID=MS.gene45963.t1.exon1;Parent=MS.gene45963.t1 |
| chr7.2 | CDS | 44745635 | 44745935 | 44745635 | ID=cds.MS.gene45963.t1;Parent=MS.gene45963.t1 |
| chr7.2 | exon | 44745420 | 44745557 | 44745420 | ID=MS.gene45963.t1.exon2;Parent=MS.gene45963.t1 |
| chr7.2 | CDS | 44745420 | 44745557 | 44745420 | ID=cds.MS.gene45963.t1;Parent=MS.gene45963.t1 |
| chr7.2 | exon | 44745089 | 44745277 | 44745089 | ID=MS.gene45963.t1.exon3;Parent=MS.gene45963.t1 |
| chr7.2 | CDS | 44745089 | 44745277 | 44745089 | ID=cds.MS.gene45963.t1;Parent=MS.gene45963.t1 |
| chr7.2 | exon | 44744850 | 44744999 | 44744850 | ID=MS.gene45963.t1.exon4;Parent=MS.gene45963.t1 |
| chr7.2 | CDS | 44744850 | 44744999 | 44744850 | ID=cds.MS.gene45963.t1;Parent=MS.gene45963.t1 |
| chr7.2 | exon | 44744275 | 44744349 | 44744275 | ID=MS.gene45963.t1.exon5;Parent=MS.gene45963.t1 |
| chr7.2 | CDS | 44744275 | 44744349 | 44744275 | ID=cds.MS.gene45963.t1;Parent=MS.gene45963.t1 |
| chr7.2 | exon | 44743440 | 44743618 | 44743440 | ID=MS.gene45963.t1.exon6;Parent=MS.gene45963.t1 |
| chr7.2 | CDS | 44743440 | 44743618 | 44743440 | ID=cds.MS.gene45963.t1;Parent=MS.gene45963.t1 |
| Gene Sequence |
| Protein sequence |
