AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45980.t1 MTR_8g064590 97.656 128 3 0 231 358 1 128 7.55e-87 258
MS.gene45980.t1 MTR_5g034290 67.407 135 44 0 224 358 27 161 3.24e-60 191
MS.gene45980.t1 MTR_5g034290 69.531 128 39 0 231 358 1 128 4.36e-59 187
MS.gene45980.t1 MTR_2g014360 65.385 130 39 2 235 358 14 143 2.37e-54 176
MS.gene45980.t1 MTR_2g090635 65.323 124 39 1 239 358 8 131 9.66e-51 166
MS.gene45980.t1 MTR_6g060020 84.783 92 13 1 267 358 1 91 1.23e-46 154
MS.gene45980.t1 MTR_5g083900 49.580 119 51 2 241 358 111 221 4.65e-26 104
MS.gene45980.t1 MTR_5g083870 47.154 123 52 4 241 358 5 119 1.83e-22 91.7
MS.gene45980.t1 MTR_2g090640 56.579 76 29 1 284 355 456 531 8.28e-16 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45980.t1 AT1G23750 73.643 129 33 1 231 358 1 129 4.61e-67 208
MS.gene45980.t1 AT1G10590 76.336 131 28 2 231 358 1 131 2.85e-66 206
MS.gene45980.t1 AT1G10590 76.336 131 28 2 231 358 1 131 2.85e-66 206
MS.gene45980.t1 AT1G10590 76.336 131 28 2 231 358 15 145 3.44e-66 206
MS.gene45980.t1 AT2G33845 68.595 121 37 1 239 358 53 173 4.17e-51 169
MS.gene45980.t1 AT4G28440 64.286 126 39 3 239 358 18 143 1.60e-49 163
MS.gene45980.t1 AT1G23750 77.174 92 21 0 267 358 1 92 7.38e-48 157
MS.gene45980.t1 AT1G03810 60.163 123 46 2 239 358 15 137 7.44e-44 148
MS.gene45980.t1 AT4G13870 34.416 154 96 4 66 217 128 278 4.58e-19 86.7
MS.gene45980.t1 AT4G13870 34.416 154 96 4 66 217 128 278 5.33e-19 86.3
MS.gene45980.t1 AT3G12410 29.108 213 125 7 26 214 12 222 1.30e-17 81.3
MS.gene45980.t1 AT2G36110 33.974 156 93 4 61 214 51 198 1.26e-15 75.9
MS.gene45980.t1 AT3G12470 32.278 158 103 4 59 214 49 204 3.65e-14 71.2
MS.gene45980.t1 AT3G12460 25.225 222 132 5 26 214 11 231 9.65e-14 70.5
MS.gene45980.t1 AT3G12430 32.624 141 92 3 76 214 91 230 1.46e-13 70.1
MS.gene45980.t1 AT3G12420 28.402 169 79 5 26 153 11 178 2.63e-11 62.4

Find 131 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGTTTCACTTCCAGTTTC+AGG 0.184004 7.2:+44373870 MS.gene45980:intron
GGGATAATCCTTGGCTTGAT+TGG 0.253159 7.2:+44373478 MS.gene45980:CDS
CCAGTTTCAGGTTAAGATTA+TGG 0.295750 7.2:+44373882 MS.gene45980:CDS
TCCTGGCCGCGTTGGGAGTT+TGG 0.310200 7.2:-44373135 None:intergenic
CGTGGATTACGAGGAGTAGA+TGG 0.317483 7.2:+44373457 MS.gene45980:CDS
GAAGAGGGAAGTGGGGATGG+AGG 0.336823 7.2:-44373226 None:intergenic
GGGAACAGGTGAGGAGGGTT+TGG 0.337881 7.2:-44373035 None:intergenic
AGAGGGAAGTGGGGATGGAG+GGG 0.342491 7.2:-44373224 None:intergenic
AGGAAGGTGAAGAGGGAAGT+GGG 0.344657 7.2:-44373234 None:intergenic
ACATTAGCGGAACGTGTTCT+TGG 0.348714 7.2:+44373414 MS.gene45980:CDS
AGTTTGGTTGGGGATGAGAC+TGG 0.358059 7.2:+44374069 MS.gene45980:CDS
ATGTCGAGGCCGATGATTGC+GGG 0.358531 7.2:-44373102 None:intergenic
CAGAGTTGGAGAGTGGCGGC+TGG 0.364152 7.2:-44373162 None:intergenic
CCATAATCTTAACCTGAAAC+TGG 0.365342 7.2:-44373882 None:intergenic
GAGGGAAGTGGGGATGGAGG+GGG 0.373533 7.2:-44373223 None:intergenic
TCCTACTGATTTCACTGTTA+AGG 0.375855 7.2:+44374236 MS.gene45980:CDS
AAGTTGCAAACTATTCAATA+AGG 0.379915 7.2:-44374275 None:intergenic
TGGGTTATCCTGGCCGCGTT+GGG 0.389115 7.2:-44373142 None:intergenic
GGTGAAGAGGGAAGTGGGGA+TGG 0.395784 7.2:-44373229 None:intergenic
GCCAGGTGTCGACGTGGGTG+GGG 0.398494 7.2:-44373056 None:intergenic
GATGCGAATTGCTGAGAGTT+TGG 0.401501 7.2:+44374053 MS.gene45980:CDS
GGATAATCCTTGGCTTGATT+GGG 0.406268 7.2:+44373479 MS.gene45980:CDS
GTAGGTGTTGTGGGTGTCGT+AGG 0.407318 7.2:-44372983 None:intergenic
GAGTGGCGGCTGGGTTATCC+TGG 0.409446 7.2:-44373152 None:intergenic
GAGGAAGGTGAAGAGGGAAG+TGG 0.420070 7.2:-44373235 None:intergenic
AGCCAGGTGTCGACGTGGGT+GGG 0.426262 7.2:-44373057 None:intergenic
ACGCCGACGAATCTGTTGTC+AGG 0.432019 7.2:-44373264 None:intergenic
TCCTTGGCTTGATTGGGATC+AGG 0.433886 7.2:+44373485 MS.gene45980:CDS
TAAGGTCGAACAGCTTCAAC+CGG 0.434832 7.2:+44373942 MS.gene45980:CDS
TAGGTGTTGTGGGTGTCGTA+GGG 0.434919 7.2:-44372982 None:intergenic
CATTAGCGGAACGTGTTCTT+GGG 0.435126 7.2:+44373415 MS.gene45980:CDS
GAAGATAAGGCAGCGGTTGT+TGG 0.443797 7.2:-44373187 None:intergenic
CCAGGTGTCGACGTGGGTGG+GGG 0.446045 7.2:-44373055 None:intergenic
AAGAGGGAAGTGGGGATGGA+GGG 0.447586 7.2:-44373225 None:intergenic
GTTAGAGAGGAAGGTGAAGA+GGG 0.450746 7.2:-44373241 None:intergenic
ATTATGGCGGAGGCAAAACC+TGG 0.453548 7.2:+44373898 MS.gene45980:CDS
TGAGGCTTGCTGTGGACAAA+TGG 0.453565 7.2:+44374193 MS.gene45980:CDS
TCCAAACTCCCAACGCGGCC+AGG 0.456447 7.2:+44373134 MS.gene45980:CDS
AGGGTGTTGGTGTGTCGTTT+TGG 0.458354 7.2:-44372930 None:intergenic
CGAATTGCTGAGAGTTTGGT+TGG 0.459494 7.2:+44374057 MS.gene45980:CDS
GAGCCAGGTGTCGACGTGGG+TGG 0.461261 7.2:-44373058 None:intergenic
GGAAGGTGAAGAGGGAAGTG+GGG 0.462479 7.2:-44373233 None:intergenic
CTGGGTTATCCTGGCCGCGT+TGG 0.465522 7.2:-44373143 None:intergenic
AGTTGCAAACTATTCAATAA+GGG 0.466515 7.2:-44374274 None:intergenic
GGTGATGGAGTAGGTGTTGT+GGG 0.466954 7.2:-44372992 None:intergenic
TCGTCGTCTTCACTCTCATC+AGG 0.469464 7.2:+44373551 MS.gene45980:CDS
TGGCCACACTCTGACTGTTA+AGG 0.471428 7.2:+44373972 MS.gene45980:CDS
ATCGTGATTTGTTGAGAAGT+GGG 0.475315 7.2:+44373385 MS.gene45980:CDS
GAGGCTTGCTGTGGACAAAT+GGG 0.484723 7.2:+44374194 MS.gene45980:CDS
CCTTGCTGCTGAGGTGCTTG+AGG 0.487145 7.2:+44373362 MS.gene45980:CDS
GTCGATGAGGGTGATGTTGA+AGG 0.488166 7.2:-44372950 None:intergenic
GGTTAGAGAGGAAGGTGAAG+AGG 0.488884 7.2:-44373242 None:intergenic
GTTTGGTTGGGGATGAGACT+GGG 0.491245 7.2:+44374070 MS.gene45980:CDS
TTCAATAAGCTTCTCGATGT+CGG 0.491984 7.2:-44373298 None:intergenic
AGTGGATGAGATGGAAGATA+AGG 0.495101 7.2:-44373200 None:intergenic
CAAACTATTCAATAAGGGAC+AGG 0.506631 7.2:-44374269 None:intergenic
GGAGTAGATGGGATAATCCT+TGG 0.509726 7.2:+44373469 MS.gene45980:CDS
GGTGTCGATGGTGATGGAGT+AGG 0.510777 7.2:-44373001 None:intergenic
GGATTGAGTTTCGAGGAGCC+AGG 0.512276 7.2:-44373073 None:intergenic
AAGGTCGGCTTTCTCAATCC+AGG 0.513274 7.2:-44373916 None:intergenic
AGGGTGATGTTGAAGGGTGT+TGG 0.516201 7.2:-44372943 None:intergenic
TGAGGAGGGTTTGGATAGTG+AGG 0.519634 7.2:-44373026 None:intergenic
GAGGGTGGTGTCGATGGTGA+TGG 0.526984 7.2:-44373007 None:intergenic
GAATTGCTGAGAGTTTGGTT+GGG 0.529078 7.2:+44374058 MS.gene45980:CDS
CAAGTCGATCTGCTGAAAGA+TGG 0.529778 7.2:+44374120 MS.gene45980:CDS
TGACGAGGCTGAGGACCATC+GGG 0.535037 7.2:-44374030 None:intergenic
CTGACGAGGCTGAGGACCAT+CGG 0.535047 7.2:-44374031 None:intergenic
AGCGGTTGTTGGTGCAGAGT+TGG 0.536847 7.2:-44373176 None:intergenic
TCAGGTTAAGATTATGGCGG+AGG 0.536907 7.2:+44373888 MS.gene45980:CDS
CAGCTTCAACCGGGGACTAG+TGG 0.540664 7.2:+44373952 MS.gene45980:CDS
ATGCAGAAGGGTCGTCCCGA+TGG 0.542463 7.2:+44374015 MS.gene45980:CDS
AATTGCTGAGAGTTTGGTTG+GGG 0.542598 7.2:+44374059 MS.gene45980:CDS
GATAGTGAGGGTGGTGTCGA+TGG 0.551753 7.2:-44373013 None:intergenic
ATTCGCATCTGACGAGGCTG+AGG 0.553923 7.2:-44374039 None:intergenic
GAGGGTTTGGATAGTGAGGG+TGG 0.557558 7.2:-44373022 None:intergenic
GACAACAGATTCGTCGGCGT+CGG 0.558705 7.2:+44373267 MS.gene45980:CDS
TCATCGGCCTCGACATCGAA+TGG 0.559761 7.2:+44373109 MS.gene45980:CDS
TACTAAGATGGTGATGCAGA+AGG 0.561427 7.2:+44374002 MS.gene45980:CDS
TTTACGTAACCTTGCTGCTG+AGG 0.564869 7.2:+44373353 MS.gene45980:CDS
GAGAAAGCCGACCTTCACTA+AGG 0.566200 7.2:+44373924 MS.gene45980:CDS
TCGATGAGGGTGATGTTGAA+GGG 0.568102 7.2:-44372949 None:intergenic
CGCCGACGAATCTGTTGTCA+GGG 0.570068 7.2:-44373263 None:intergenic
GTTGTCAGGGTTAGAGAGGA+AGG 0.571981 7.2:-44373250 None:intergenic
ATCTGTTGTCAGGGTTAGAG+AGG 0.574653 7.2:-44373254 None:intergenic
AACCCTGACAACAGATTCGT+CGG 0.574849 7.2:+44373261 MS.gene45980:CDS
TGTCGAGGCCGATGATTGCG+GGG 0.579688 7.2:-44373101 None:intergenic
TGGTGATGGAGTAGGTGTTG+TGG 0.580668 7.2:-44372993 None:intergenic
GTGGATTACGAGGAGTAGAT+GGG 0.581376 7.2:+44373458 MS.gene45980:CDS
AGGTGTTGTGGGTGTCGTAG+GGG 0.584862 7.2:-44372981 None:intergenic
AGAGTTGGAGAGTGGCGGCT+GGG 0.587765 7.2:-44373161 None:intergenic
GGGAGAGGGATTGAGTTTCG+AGG 0.587929 7.2:-44373080 None:intergenic
TGTTCGACCTTAGTGAAGGT+CGG 0.595402 7.2:-44373931 None:intergenic
TCCTTAACAGTGAAATCAGT+AGG 0.595652 7.2:-44374237 None:intergenic
GAGGAGGGTTTGGATAGTGA+GGG 0.597013 7.2:-44373025 None:intergenic
AAGGTCGAACAGCTTCAACC+GGG 0.597345 7.2:+44373943 MS.gene45980:CDS
TGTTGTGGGTGTCGTAGGGG+AGG 0.597459 7.2:-44372978 None:intergenic
AGAGTGTGGCCACTAGTCCC+CGG 0.599002 7.2:-44373961 None:intergenic
GATCGTGATTTGTTGAGAAG+TGG 0.602959 7.2:+44373384 MS.gene45980:CDS
CGAGGAGCCAGGTGTCGACG+TGG 0.603292 7.2:-44373062 None:intergenic
GATGTCGAGGCCGATGATTG+CGG 0.603787 7.2:-44373103 None:intergenic
AAGCTGTTCGACCTTAGTGA+AGG 0.608000 7.2:-44373935 None:intergenic
ACATGTTTAATGGATCAATG+AGG 0.609917 7.2:+44374175 MS.gene45980:CDS
AGGGGAGGTAGTTGTCGATG+AGG 0.611336 7.2:-44372963 None:intergenic
ACTAAGATGGTGATGCAGAA+GGG 0.612291 7.2:+44374003 MS.gene45980:CDS
GGGGAGGTAGTTGTCGATGA+GGG 0.612787 7.2:-44372962 None:intergenic
TTGGACGCCATTCGATGTCG+AGG 0.616614 7.2:-44373116 None:intergenic
CATCTACTCCTCGTAATCCA+CGG 0.618573 7.2:-44373456 None:intergenic
ACCTGATCCCAATCAAGCCA+AGG 0.620498 7.2:-44373486 None:intergenic
TAAGGTGGTGAATACTAAGA+TGG 0.631699 7.2:+44373990 MS.gene45980:CDS
CCACACTCTGACTGTTAAGG+TGG 0.632768 7.2:+44373975 MS.gene45980:CDS
CCTCAAGCACCTCAGCAGCA+AGG 0.633154 7.2:-44373362 None:intergenic
AAGTGGGATTAAGACATTAG+CGG 0.633283 7.2:+44373401 MS.gene45980:CDS
AAGACGACGAGCAATCTCAA+AGG 0.634616 7.2:-44373538 None:intergenic
TGGATCAATGAGGCTTGCTG+TGG 0.638727 7.2:+44374185 MS.gene45980:CDS
AGAAGCCGCCGTGGATTACG+AGG 0.639037 7.2:+44373448 MS.gene45980:CDS
GTTGGTGCAGAGTTGGAGAG+TGG 0.641864 7.2:-44373169 None:intergenic
TCAGCAATTCGCATCTGACG+AGG 0.644396 7.2:-44374045 None:intergenic
GGTGCAGAGTTGGAGAGTGG+CGG 0.645678 7.2:-44373166 None:intergenic
CCACCTTAACAGTCAGAGTG+TGG 0.652542 7.2:-44373975 None:intergenic
TAAATCAACATAATTCGCAA+CGG 0.655183 7.2:-44373334 None:intergenic
TGAGATGGAAGATAAGGCAG+CGG 0.659112 7.2:-44373194 None:intergenic
GAGGAGCCAGGTGTCGACGT+GGG 0.661679 7.2:-44373061 None:intergenic
AGATTGTTCAGAAGCCGCCG+TGG 0.663664 7.2:+44373439 MS.gene45980:CDS
AGGTCGAACAGCTTCAACCG+GGG 0.663813 7.2:+44373944 MS.gene45980:CDS
GTTTCAGGTTAAGATTATGG+CGG 0.668082 7.2:+44373885 MS.gene45980:CDS
CAACATAATTCGCAACGGTG+AGG 0.669910 7.2:-44373329 None:intergenic
GTCGAGGCCGATGATTGCGG+GGG 0.672413 7.2:-44373100 None:intergenic
AGGCTTGCTGTGGACAAATG+GGG 0.694034 7.2:+44374195 MS.gene45980:CDS
TAGGATCTGTTACTTCAACA+CGG 0.728623 7.2:-44374218 None:intergenic
TGGCGTCCAAACTCCCAACG+CGG 0.767636 7.2:+44373129 MS.gene45980:CDS
CTACTCCTCGTAATCCACGG+CGG 0.835300 7.2:-44373453 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTGTTATTAGAATCTT+AGG + chr7.2:44373701-44373720 MS.gene45980:intron 15.0%
!! AGATTCTAATAACAAATTTC+TGG - chr7.2:44373700-44373719 None:intergenic 20.0%
! GCAAAAATTGACATGTTTAA+TGG + chr7.2:44374165-44374184 MS.gene45980:CDS 25.0%
! TAAATCAACATAATTCGCAA+CGG - chr7.2:44373337-44373356 None:intergenic 25.0%
!! AATCTTAGGTGTGTATTTTA+TGG + chr7.2:44373715-44373734 MS.gene45980:intron 25.0%
!! TTCAAGGAGTTATGATTTTA+TGG + chr7.2:44373661-44373680 MS.gene45980:intron 25.0%
!!! ATTCCTCTAGTTTTATGTTA+AGG + chr7.2:44373601-44373620 MS.gene45980:intron 25.0%
GTATTCGATGATGATTATTC+TGG + chr7.2:44373637-44373656 MS.gene45980:intron 30.0%
TCACCTTAACATAAAACTAG+AGG - chr7.2:44373607-44373626 None:intergenic 30.0%
TGATGATTATTCTGGATTCA+AGG + chr7.2:44373645-44373664 MS.gene45980:intron 30.0%
! ACATGTTTAATGGATCAATG+AGG + chr7.2:44374175-44374194 MS.gene45980:CDS 30.0%
AAGTGGGATTAAGACATTAG+CGG + chr7.2:44373401-44373420 MS.gene45980:CDS 35.0%
CCATAATCTTAACCTGAAAC+TGG - chr7.2:44373885-44373904 None:intergenic 35.0%
TAAGGTGGTGAATACTAAGA+TGG + chr7.2:44373990-44374009 MS.gene45980:CDS 35.0%
TCCTTAACAGTGAAATCAGT+AGG - chr7.2:44374240-44374259 None:intergenic 35.0%
TTCAATAAGCTTCTCGATGT+CGG - chr7.2:44373301-44373320 None:intergenic 35.0%
! TAGGATCTGTTACTTCAACA+CGG - chr7.2:44374221-44374240 None:intergenic 35.0%
! TTTTATGGTTTGATTCTGCG+TGG + chr7.2:44373730-44373749 MS.gene45980:intron 35.0%
!! ATCGTGATTTGTTGAGAAGT+GGG + chr7.2:44373385-44373404 MS.gene45980:CDS 35.0%
!! CCAGTTTCAGGTTAAGATTA+TGG + chr7.2:44373882-44373901 MS.gene45980:CDS 35.0%
!! GTTTCAGGTTAAGATTATGG+CGG + chr7.2:44373885-44373904 MS.gene45980:CDS 35.0%
!! TCCTACTGATTTCACTGTTA+AGG + chr7.2:44374236-44374255 MS.gene45980:CDS 35.0%
AATTGCTGAGAGTTTGGTTG+GGG + chr7.2:44374059-44374078 MS.gene45980:CDS 40.0%
AGTGGATGAGATGGAAGATA+AGG - chr7.2:44373203-44373222 None:intergenic 40.0%
GAATTGCTGAGAGTTTGGTT+GGG + chr7.2:44374058-44374077 MS.gene45980:CDS 40.0%
! ACTAAGATGGTGATGCAGAA+GGG + chr7.2:44374003-44374022 MS.gene45980:CDS 40.0%
! GGATAATCCTTGGCTTGATT+GGG + chr7.2:44373479-44373498 MS.gene45980:CDS 40.0%
! TACTAAGATGGTGATGCAGA+AGG + chr7.2:44374002-44374021 MS.gene45980:CDS 40.0%
! TTTTGGTCAACGAGGGTAAT+CGG - chr7.2:44372916-44372935 None:intergenic 40.0%
!! GATCGTGATTTGTTGAGAAG+TGG + chr7.2:44373384-44373403 MS.gene45980:CDS 40.0%
AACCCTGACAACAGATTCGT+CGG + chr7.2:44373261-44373280 MS.gene45980:CDS 45.0%
AAGACGACGAGCAATCTCAA+AGG - chr7.2:44373541-44373560 None:intergenic 45.0%
AAGCTGTTCGACCTTAGTGA+AGG - chr7.2:44373938-44373957 None:intergenic 45.0%
ACATTAGCGGAACGTGTTCT+TGG + chr7.2:44373414-44373433 MS.gene45980:CDS 45.0%
ATCTGTTGTCAGGGTTAGAG+AGG - chr7.2:44373257-44373276 None:intergenic 45.0%
CAACATAATTCGCAACGGTG+AGG - chr7.2:44373332-44373351 None:intergenic 45.0%
CAAGTCGATCTGCTGAAAGA+TGG + chr7.2:44374120-44374139 MS.gene45980:CDS 45.0%
CATCTACTCCTCGTAATCCA+CGG - chr7.2:44373459-44373478 None:intergenic 45.0%
CATTAGCGGAACGTGTTCTT+GGG + chr7.2:44373415-44373434 MS.gene45980:CDS 45.0%
CGAATTGCTGAGAGTTTGGT+TGG + chr7.2:44374057-44374076 MS.gene45980:CDS 45.0%
GATGCGAATTGCTGAGAGTT+TGG + chr7.2:44374053-44374072 MS.gene45980:CDS 45.0%
GCAGTTTCACTTCCAGTTTC+AGG + chr7.2:44373870-44373889 MS.gene45980:intron 45.0%
GGAGTAGATGGGATAATCCT+TGG + chr7.2:44373469-44373488 MS.gene45980:CDS 45.0%
GTTAGAGAGGAAGGTGAAGA+GGG - chr7.2:44373244-44373263 None:intergenic 45.0%
TAAGGTCGAACAGCTTCAAC+CGG + chr7.2:44373942-44373961 MS.gene45980:CDS 45.0%
TCAGGTTAAGATTATGGCGG+AGG + chr7.2:44373888-44373907 MS.gene45980:CDS 45.0%
TCGATGAGGGTGATGTTGAA+GGG - chr7.2:44372952-44372971 None:intergenic 45.0%
TGAGATGGAAGATAAGGCAG+CGG - chr7.2:44373197-44373216 None:intergenic 45.0%
TGTTCGACCTTAGTGAAGGT+CGG - chr7.2:44373934-44373953 None:intergenic 45.0%
TTTACGTAACCTTGCTGCTG+AGG + chr7.2:44373353-44373372 MS.gene45980:CDS 45.0%
! GGGATAATCCTTGGCTTGAT+TGG + chr7.2:44373478-44373497 MS.gene45980:CDS 45.0%
! GTGGATTACGAGGAGTAGAT+GGG + chr7.2:44373458-44373477 MS.gene45980:CDS 45.0%
!!! TGTGTCGTTTTGGTCAACGA+GGG - chr7.2:44372923-44372942 None:intergenic 45.0%
AAGGTCGAACAGCTTCAACC+GGG + chr7.2:44373943-44373962 MS.gene45980:CDS 50.0%
ACCTGATCCCAATCAAGCCA+AGG - chr7.2:44373489-44373508 None:intergenic 50.0%
AGGAAGGTGAAGAGGGAAGT+GGG - chr7.2:44373237-44373256 None:intergenic 50.0%
AGTTTGGTTGGGGATGAGAC+TGG + chr7.2:44374069-44374088 MS.gene45980:CDS 50.0%
CCACACTCTGACTGTTAAGG+TGG + chr7.2:44373975-44373994 MS.gene45980:CDS 50.0%
CCACCTTAACAGTCAGAGTG+TGG - chr7.2:44373978-44373997 None:intergenic 50.0%
GAAGATAAGGCAGCGGTTGT+TGG - chr7.2:44373190-44373209 None:intergenic 50.0%
GAGAAAGCCGACCTTCACTA+AGG + chr7.2:44373924-44373943 MS.gene45980:CDS 50.0%
GAGGAGGGTTTGGATAGTGA+GGG - chr7.2:44373028-44373047 None:intergenic 50.0%
GGTTAGAGAGGAAGGTGAAG+AGG - chr7.2:44373245-44373264 None:intergenic 50.0%
GTCGATGAGGGTGATGTTGA+AGG - chr7.2:44372953-44372972 None:intergenic 50.0%
GTTGTCAGGGTTAGAGAGGA+AGG - chr7.2:44373253-44373272 None:intergenic 50.0%
GTTTGGTTGGGGATGAGACT+GGG + chr7.2:44374070-44374089 MS.gene45980:CDS 50.0%
TCAGCAATTCGCATCTGACG+AGG - chr7.2:44374048-44374067 None:intergenic 50.0%
TCGTCGTCTTCACTCTCATC+AGG + chr7.2:44373551-44373570 MS.gene45980:CDS 50.0%
TGAGGAGGGTTTGGATAGTG+AGG - chr7.2:44373029-44373048 None:intergenic 50.0%
TGGCCACACTCTGACTGTTA+AGG + chr7.2:44373972-44373991 MS.gene45980:CDS 50.0%
! AAGGTCGGCTTTCTCAATCC+AGG - chr7.2:44373919-44373938 None:intergenic 50.0%
! AGGGTGATGTTGAAGGGTGT+TGG - chr7.2:44372946-44372965 None:intergenic 50.0%
! ATTATGGCGGAGGCAAAACC+TGG + chr7.2:44373898-44373917 MS.gene45980:CDS 50.0%
! CGTGGATTACGAGGAGTAGA+TGG + chr7.2:44373457-44373476 MS.gene45980:CDS 50.0%
! TAGGTGTTGTGGGTGTCGTA+GGG - chr7.2:44372985-44373004 None:intergenic 50.0%
! TCCTTGGCTTGATTGGGATC+AGG + chr7.2:44373485-44373504 MS.gene45980:CDS 50.0%
!! AGGCTTGCTGTGGACAAATG+GGG + chr7.2:44374195-44374214 MS.gene45980:CDS 50.0%
!! GAGGCTTGCTGTGGACAAAT+GGG + chr7.2:44374194-44374213 MS.gene45980:CDS 50.0%
!! GGTGATGGAGTAGGTGTTGT+GGG - chr7.2:44372995-44373014 None:intergenic 50.0%
!! TGAGGCTTGCTGTGGACAAA+TGG + chr7.2:44374193-44374212 MS.gene45980:CDS 50.0%
!! TGGATCAATGAGGCTTGCTG+TGG + chr7.2:44374185-44374204 MS.gene45980:CDS 50.0%
!! TGGTGATGGAGTAGGTGTTG+TGG - chr7.2:44372996-44373015 None:intergenic 50.0%
!!! AGGGTGTTGGTGTGTCGTTT+TGG - chr7.2:44372933-44372952 None:intergenic 50.0%
!!! GTGTGTCGTTTTGGTCAACG+AGG - chr7.2:44372924-44372943 None:intergenic 50.0%
AAGAGGGAAGTGGGGATGGA+GGG - chr7.2:44373228-44373247 None:intergenic 55.0%
ACGCCGACGAATCTGTTGTC+AGG - chr7.2:44373267-44373286 None:intergenic 55.0%
AGATTGTTCAGAAGCCGCCG+TGG + chr7.2:44373439-44373458 MS.gene45980:CDS 55.0%
AGCGGTTGTTGGTGCAGAGT+TGG - chr7.2:44373179-44373198 None:intergenic 55.0%
AGGGGAGGTAGTTGTCGATG+AGG - chr7.2:44372966-44372985 None:intergenic 55.0%
AGGTCGAACAGCTTCAACCG+GGG + chr7.2:44373944-44373963 MS.gene45980:CDS 55.0%
ATGTCGAGGCCGATGATTGC+GGG - chr7.2:44373105-44373124 None:intergenic 55.0%
ATTCGCATCTGACGAGGCTG+AGG - chr7.2:44374042-44374061 None:intergenic 55.0%
CGCCGACGAATCTGTTGTCA+GGG - chr7.2:44373266-44373285 None:intergenic 55.0%
CTACTCCTCGTAATCCACGG+CGG - chr7.2:44373456-44373475 None:intergenic 55.0%
GACAACAGATTCGTCGGCGT+CGG + chr7.2:44373267-44373286 MS.gene45980:CDS 55.0%
GAGGAAGGTGAAGAGGGAAG+TGG - chr7.2:44373238-44373257 None:intergenic 55.0%
GAGGGTTTGGATAGTGAGGG+TGG - chr7.2:44373025-44373044 None:intergenic 55.0%
GATGTCGAGGCCGATGATTG+CGG - chr7.2:44373106-44373125 None:intergenic 55.0%
GGAAGGTGAAGAGGGAAGTG+GGG - chr7.2:44373236-44373255 None:intergenic 55.0%
GGATTGAGTTTCGAGGAGCC+AGG - chr7.2:44373076-44373095 None:intergenic 55.0%
GGGAGAGGGATTGAGTTTCG+AGG - chr7.2:44373083-44373102 None:intergenic 55.0%
GGGGAGGTAGTTGTCGATGA+GGG - chr7.2:44372965-44372984 None:intergenic 55.0%
GTTGGTGCAGAGTTGGAGAG+TGG - chr7.2:44373172-44373191 None:intergenic 55.0%
TCATCGGCCTCGACATCGAA+TGG + chr7.2:44373109-44373128 MS.gene45980:CDS 55.0%
TTGGACGCCATTCGATGTCG+AGG - chr7.2:44373119-44373138 None:intergenic 55.0%
! AGGTGTTGTGGGTGTCGTAG+GGG - chr7.2:44372984-44373003 None:intergenic 55.0%
! GATAGTGAGGGTGGTGTCGA+TGG - chr7.2:44373016-44373035 None:intergenic 55.0%
! GTAGGTGTTGTGGGTGTCGT+AGG - chr7.2:44372986-44373005 None:intergenic 55.0%
!! GGTGTCGATGGTGATGGAGT+AGG - chr7.2:44373004-44373023 None:intergenic 55.0%
AGAGGGAAGTGGGGATGGAG+GGG - chr7.2:44373227-44373246 None:intergenic 60.0%
AGAGTGTGGCCACTAGTCCC+CGG - chr7.2:44373964-44373983 None:intergenic 60.0%
AGAGTTGGAGAGTGGCGGCT+GGG - chr7.2:44373164-44373183 None:intergenic 60.0%
ATGCAGAAGGGTCGTCCCGA+TGG + chr7.2:44374015-44374034 MS.gene45980:CDS 60.0%
CAGCTTCAACCGGGGACTAG+TGG + chr7.2:44373952-44373971 MS.gene45980:CDS 60.0%
CCTCAAGCACCTCAGCAGCA+AGG - chr7.2:44373365-44373384 None:intergenic 60.0%
CTGACGAGGCTGAGGACCAT+CGG - chr7.2:44374034-44374053 None:intergenic 60.0%
GAAGAGGGAAGTGGGGATGG+AGG - chr7.2:44373229-44373248 None:intergenic 60.0%
GGGAACAGGTGAGGAGGGTT+TGG - chr7.2:44373038-44373057 None:intergenic 60.0%
GGTGAAGAGGGAAGTGGGGA+TGG - chr7.2:44373232-44373251 None:intergenic 60.0%
GGTGCAGAGTTGGAGAGTGG+CGG - chr7.2:44373169-44373188 None:intergenic 60.0%
TCCCTCTCCCCCGCAATCAT+CGG + chr7.2:44373093-44373112 MS.gene45980:CDS 60.0%
TGACGAGGCTGAGGACCATC+GGG - chr7.2:44374033-44374052 None:intergenic 60.0%
TGGAGGGGGAGTGGATGAGA+TGG - chr7.2:44373212-44373231 None:intergenic 60.0%
TGGCGTCCAAACTCCCAACG+CGG + chr7.2:44373129-44373148 MS.gene45980:CDS 60.0%
TGGGTTATCCTGGCCGCGTT+GGG - chr7.2:44373145-44373164 None:intergenic 60.0%
TGTCGAGGCCGATGATTGCG+GGG - chr7.2:44373104-44373123 None:intergenic 60.0%
! AGAAGCCGCCGTGGATTACG+AGG + chr7.2:44373448-44373467 MS.gene45980:CDS 60.0%
! CCTTGCTGCTGAGGTGCTTG+AGG + chr7.2:44373362-44373381 MS.gene45980:CDS 60.0%
! TGTTGTGGGTGTCGTAGGGG+AGG - chr7.2:44372981-44373000 None:intergenic 60.0%
!! GAGGGTGGTGTCGATGGTGA+TGG - chr7.2:44373010-44373029 None:intergenic 60.0%
AAGTGGGGATGGAGGGGGAG+TGG - chr7.2:44373221-44373240 None:intergenic 65.0%
CAGAGTTGGAGAGTGGCGGC+TGG - chr7.2:44373165-44373184 None:intergenic 65.0%
CTGGGTTATCCTGGCCGCGT+TGG - chr7.2:44373146-44373165 None:intergenic 65.0%
GAGGGAAGTGGGGATGGAGG+GGG - chr7.2:44373226-44373245 None:intergenic 65.0%
GAGTGGCGGCTGGGTTATCC+TGG - chr7.2:44373155-44373174 None:intergenic 65.0%
GCCGATGATTGCGGGGGAGA+GGG - chr7.2:44373097-44373116 None:intergenic 65.0%
GGTGGGGGAACAGGTGAGGA+GGG - chr7.2:44373043-44373062 None:intergenic 65.0%
GTCGAGGCCGATGATTGCGG+GGG - chr7.2:44373103-44373122 None:intergenic 65.0%
TCCAAACTCCCAACGCGGCC+AGG + chr7.2:44373134-44373153 MS.gene45980:CDS 65.0%
TCCTGGCCGCGTTGGGAGTT+TGG - chr7.2:44373138-44373157 None:intergenic 65.0%
!! AGCCAGGTGTCGACGTGGGT+GGG - chr7.2:44373060-44373079 None:intergenic 65.0%
!! GAGGAGCCAGGTGTCGACGT+GGG - chr7.2:44373064-44373083 None:intergenic 65.0%
CGTGGGTGGGGGAACAGGTG+AGG - chr7.2:44373047-44373066 None:intergenic 70.0%
GGCCGATGATTGCGGGGGAG+AGG - chr7.2:44373098-44373117 None:intergenic 70.0%
GGGTGGGGGAACAGGTGAGG+AGG - chr7.2:44373044-44373063 None:intergenic 70.0%
GTCGACGTGGGTGGGGGAAC+AGG - chr7.2:44373052-44373071 None:intergenic 70.0%
!! CCAGGTGTCGACGTGGGTGG+GGG - chr7.2:44373058-44373077 None:intergenic 70.0%
!! CGAGGAGCCAGGTGTCGACG+TGG - chr7.2:44373065-44373084 None:intergenic 70.0%
!! GAGCCAGGTGTCGACGTGGG+TGG - chr7.2:44373061-44373080 None:intergenic 70.0%
!! GCCAGGTGTCGACGTGGGTG+GGG - chr7.2:44373059-44373078 None:intergenic 70.0%
CCCCCACCCACGTCGACACC+TGG + chr7.2:44373055-44373074 MS.gene45980:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 44372910 44374287 44372910 ID=MS.gene45980
chr7.2 mRNA 44372910 44374287 44372910 ID=MS.gene45980.t1;Parent=MS.gene45980
chr7.2 exon 44372910 44373572 44372910 ID=MS.gene45980.t1.exon1;Parent=MS.gene45980.t1
chr7.2 CDS 44372910 44373572 44372910 ID=cds.MS.gene45980.t1;Parent=MS.gene45980.t1
chr7.2 exon 44373874 44374287 44373874 ID=MS.gene45980.t1.exon2;Parent=MS.gene45980.t1
chr7.2 CDS 44373874 44374287 44373874 ID=cds.MS.gene45980.t1;Parent=MS.gene45980.t1
Gene Sequence

>MS.gene45980

ATGCCGATTACCCTCGTTGACCAAAACGACACACCAACACCCTTCAACATCACCCTCATCGACAACTACCTCCCCTACGACACCCACAACACCTACTCCATCACCATCGACACCACCCTCACTATCCAAACCCTCCTCACCTGTTCCCCCACCCACGTCGACACCTGGCTCCTCGAAACTCAATCCCTCTCCCCCGCAATCATCGGCCTCGACATCGAATGGCGTCCAAACTCCCAACGCGGCCAGGATAACCCAGCCGCCACTCTCCAACTCTGCACCAACAACCGCTGCCTTATCTTCCATCTCATCCACTCCCCCTCCATCCCCACTTCCCTCTTCACCTTCCTCTCTAACCCTGACAACAGATTCGTCGGCGTCGGAATCGAATCCGACATCGAGAAGCTTATTGAAGACTACAACCTCACCGTTGCGAATTATGTTGATTTACGTAACCTTGCTGCTGAGGTGCTTGAGGATCGTGATTTGTTGAGAAGTGGGATTAAGACATTAGCGGAACGTGTTCTTGGGAAGATTGTTCAGAAGCCGCCGTGGATTACGAGGAGTAGATGGGATAATCCTTGGCTTGATTGGGATCAGGTTCAGTATGCTACAGTTGATGCTTTTCTTTCCTTTGAGATTGCTCGTCGTCTTCACTCTCATCAGGTTATTGAATGAATGAACATGATTGATGATTCCTCTAGTTTTATGTTAAGGTGATTGTGATGATGTATTCGATGATGATTATTCTGGATTCAAGGAGTTATGATTTTATGGTTTATCATTTGTGCCAGAAATTTGTTATTAGAATCTTAGGTGTGTATTTTATGGTTTGATTCTGCGTGGACGAAAGTTTATTTTATTAAATTGATTTTATCTAAAAGAAATAAACAATAAATTTCAGTACAAAATCAGTTTAGAAACAAAAGCTAGAATCTATATTGATAGCAAAATCAACTATAAGCAGTTTCACTTCCAGTTTCAGGTTAAGATTATGGCGGAGGCAAAACCTGGATTGAGAAAGCCGACCTTCACTAAGGTCGAACAGCTTCAACCGGGGACTAGTGGCCACACTCTGACTGTTAAGGTGGTGAATACTAAGATGGTGATGCAGAAGGGTCGTCCCGATGGTCCTCAGCCTCGTCAGATGCGAATTGCTGAGAGTTTGGTTGGGGATGAGACTGGGATGATCATCTTTACTGCAAGAAATGATCAAGTCGATCTGCTGAAAGATGGCTCTACTATCATTTTGCGAAATGCAAAAATTGACATGTTTAATGGATCAATGAGGCTTGCTGTGGACAAATGGGGCCGTGTTGAAGTAACAGATCCTACTGATTTCACTGTTAAGGAAGACAACAACCTGTCCCTTATTGAATAG
Protein sequence

>MS.gene45980.t1

MPITLVDQNDTPTPFNITLIDNYLPYDTHNTYSITIDTTLTIQTLLTCSPTHVDTWLLETQSLSPAIIGLDIEWRPNSQRGQDNPAATLQLCTNNRCLIFHLIHSPSIPTSLFTFLSNPDNRFVGVGIESDIEKLIEDYNLTVANYVDLRNLAAEVLEDRDLLRSGIKTLAERVLGKIVQKPPWITRSRWDNPWLDWDQVQYATVDAFLSFEIARRLHSHQFHFQFQVKIMAEAKPGLRKPTFTKVEQLQPGTSGHTLTVKVVNTKMVMQKGRPDGPQPRQMRIAESLVGDETGMIIFTARNDQVDLLKDGSTIILRNAKIDMFNGSMRLAVDKWGRVEVTDPTDFTVKEDNNLSLIE