Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46016.t1 | XP_013449054.1 | 97.2 | 352 | 10 | 0 | 1 | 352 | 1 | 352 | 1.80E-197 | 698.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46016.t1 | Q9M9E0 | 25.4 | 264 | 171 | 8 | 8 | 250 | 13 | 271 | 8.7e-12 | 72.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46016.t1 | A0A072U0X1 | 97.2 | 352 | 10 | 0 | 1 | 352 | 1 | 352 | 1.3e-197 | 698.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene46016 | 0.800768 | 1.23E-48 | -1.69E-46 |
| MS.gene052133 | MS.gene46016 | 0.814765 | 1.30E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene46016 | 0.808113 | 3.63E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene46016 | -0.801465 | 8.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46016.t1 | MTR_7g066210 | 97.159 | 352 | 10 | 0 | 1 | 352 | 1 | 352 | 0.0 | 704 |
| MS.gene46016.t1 | MTR_4g019080 | 47.696 | 369 | 151 | 11 | 2 | 352 | 6 | 350 | 4.41e-102 | 305 |
| MS.gene46016.t1 | MTR_3g069910 | 30.909 | 330 | 203 | 7 | 36 | 352 | 27 | 344 | 4.22e-39 | 142 |
| MS.gene46016.t1 | MTR_5g068770 | 29.555 | 247 | 148 | 8 | 27 | 251 | 33 | 275 | 3.84e-19 | 89.0 |
| MS.gene46016.t1 | MTR_7g011345 | 54.545 | 77 | 28 | 3 | 260 | 330 | 1 | 76 | 6.62e-19 | 80.5 |
| MS.gene46016.t1 | MTR_5g077100 | 27.749 | 191 | 127 | 5 | 65 | 251 | 65 | 248 | 1.70e-13 | 72.0 |
| MS.gene46016.t1 | MTR_4g093080 | 26.154 | 325 | 197 | 15 | 9 | 313 | 10 | 311 | 6.53e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46016.t1 | AT5G01090 | 36.389 | 360 | 209 | 9 | 1 | 348 | 1 | 352 | 1.54e-57 | 191 |
| MS.gene46016.t1 | AT3G09190 | 32.970 | 367 | 209 | 13 | 1 | 352 | 1 | 345 | 2.08e-49 | 169 |
| MS.gene46016.t1 | AT3G09035 | 34.393 | 346 | 199 | 10 | 1 | 330 | 1 | 334 | 1.39e-39 | 143 |
| MS.gene46016.t1 | AT3G54080 | 28.662 | 314 | 198 | 8 | 33 | 339 | 39 | 333 | 3.29e-20 | 90.9 |
| MS.gene46016.t1 | AT5G03140 | 34.054 | 185 | 107 | 8 | 65 | 240 | 71 | 249 | 2.89e-15 | 77.4 |
| MS.gene46016.t1 | AT5G60270 | 28.090 | 267 | 150 | 13 | 7 | 251 | 9 | 255 | 2.61e-13 | 71.6 |
| MS.gene46016.t1 | AT4G02420 | 26.022 | 269 | 172 | 9 | 4 | 253 | 2 | 262 | 8.54e-13 | 70.1 |
| MS.gene46016.t1 | AT5G55830 | 27.778 | 234 | 143 | 10 | 42 | 256 | 43 | 269 | 1.74e-12 | 68.9 |
| MS.gene46016.t1 | AT3G45430 | 28.175 | 252 | 136 | 11 | 25 | 251 | 26 | 257 | 3.33e-11 | 65.1 |
| MS.gene46016.t1 | AT3G45430 | 28.175 | 252 | 136 | 11 | 25 | 251 | 26 | 257 | 3.33e-11 | 65.1 |
| MS.gene46016.t1 | AT3G45430 | 28.175 | 252 | 136 | 11 | 25 | 251 | 26 | 257 | 3.33e-11 | 65.1 |
| MS.gene46016.t1 | AT4G29050 | 27.232 | 224 | 138 | 9 | 50 | 253 | 42 | 260 | 4.35e-11 | 64.7 |
| MS.gene46016.t1 | AT4G29050 | 27.232 | 224 | 138 | 9 | 50 | 253 | 56 | 274 | 4.35e-11 | 64.7 |
| MS.gene46016.t1 | AT3G53380 | 33.971 | 209 | 126 | 9 | 40 | 240 | 32 | 236 | 8.53e-11 | 63.9 |
Find 69 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCTGAAGTTCTGCTTTC+TGG | 0.021850 | 7.2:+43654647 | MS.gene46016:CDS |
| TCTACTCCTTACCATCTTTA+AGG | 0.130556 | 7.2:-43655525 | None:intergenic |
| CGGTTGATTTGTCGTATAAT+TGG | 0.149646 | 7.2:+43655137 | MS.gene46016:CDS |
| ATTCTTGCTGCAATGATATT+TGG | 0.171092 | 7.2:+43655358 | MS.gene46016:CDS |
| CAATGTGTCTTCTGTTAATA+TGG | 0.230739 | 7.2:+43654994 | MS.gene46016:CDS |
| TTATGTATAAGAAACCTATT+AGG | 0.239703 | 7.2:+43654696 | MS.gene46016:CDS |
| CTTTCTGGGTATGGTGATTC+TGG | 0.243278 | 7.2:+43654662 | MS.gene46016:CDS |
| ATTCGAGGCGTTTGGAAGTT+AGG | 0.257696 | 7.2:+43655065 | MS.gene46016:CDS |
| TGCCATAACAACGGATTAAC+CGG | 0.292117 | 7.2:-43655112 | None:intergenic |
| CCTAAAACAGACTTAAAGTT+TGG | 0.294269 | 7.2:-43654593 | None:intergenic |
| GGCAATGCAAAAGTTGTTAA+TGG | 0.301120 | 7.2:+43654623 | MS.gene46016:CDS |
| TCAACATCAACAACCCTAAT+AGG | 0.311221 | 7.2:-43654710 | None:intergenic |
| GTTCTGAAGTTCTGCTTTCT+GGG | 0.320424 | 7.2:+43654648 | MS.gene46016:CDS |
| GCTGCAATGATATTTGGTTC+TGG | 0.331142 | 7.2:+43655364 | MS.gene46016:CDS |
| GACACATTGATTCTCTTAAC+AGG | 0.337112 | 7.2:-43654980 | None:intergenic |
| GTTTGAAGGAGAAGGATTCT+AGG | 0.340184 | 7.2:+43654867 | MS.gene46016:CDS |
| AATAAGAGTTCTGATAGTTT+TGG | 0.346135 | 7.2:+43654929 | MS.gene46016:CDS |
| GTTAATATGGTTATAAGAAA+TGG | 0.356759 | 7.2:+43655007 | MS.gene46016:CDS |
| CTACTCCTTACCATCTTTAA+GGG | 0.381035 | 7.2:-43655524 | None:intergenic |
| GGGTATGGTGATTCTGGAAA+TGG | 0.381506 | 7.2:+43654668 | MS.gene46016:CDS |
| ACCTCATCTTCAAAACCCTT+TGG | 0.387492 | 7.2:-43654824 | None:intergenic |
| CTTTATTTGTGGACGATGTT+TGG | 0.394486 | 7.2:+43655415 | MS.gene46016:CDS |
| CGTTTACCGTGCTTTATTTG+TGG | 0.398884 | 7.2:+43655404 | MS.gene46016:CDS |
| ATTCATGGAGCTTTGATGTA+AGG | 0.399755 | 7.2:+43655227 | MS.gene46016:CDS |
| GAAGTTCTGCTTTCTGGGTA+TGG | 0.404222 | 7.2:+43654653 | MS.gene46016:CDS |
| GAAAATGACACCAACAACTT+TGG | 0.404568 | 7.2:-43654740 | None:intergenic |
| AGCCGGTTAATCCGTTGTTA+TGG | 0.405118 | 7.2:+43655110 | MS.gene46016:CDS |
| GAAGTTAGGTTGAGTCGATA+TGG | 0.423160 | 7.2:+43655079 | MS.gene46016:CDS |
| TGATTCGAATTCGAGGCGTT+TGG | 0.434534 | 7.2:+43655057 | MS.gene46016:CDS |
| ATGATATTTGGTTCTGGATG+TGG | 0.437343 | 7.2:+43655370 | MS.gene46016:CDS |
| TTATTGCTTCAAGAGATGTT+AGG | 0.445727 | 7.2:+43654906 | MS.gene46016:CDS |
| ATCTTTACCAAAATCATTGA+AGG | 0.448209 | 7.2:-43654570 | None:intergenic |
| TATGTATAAGAAACCTATTA+GGG | 0.450617 | 7.2:+43654697 | MS.gene46016:CDS |
| TAATCCGTTGTTATGGCAAT+CGG | 0.459536 | 7.2:+43655117 | MS.gene46016:CDS |
| CACAAAGTGAGAATAGTAAA+GGG | 0.461613 | 7.2:-43654509 | None:intergenic |
| GTTGATAAACCCCTTAAAGA+TGG | 0.462521 | 7.2:+43655514 | MS.gene46016:CDS |
| ATGGTGGAAAGTTGCATGCT+TGG | 0.462713 | 7.2:+43655026 | MS.gene46016:CDS |
| TTTGGTATGGCTATTGATGT+TGG | 0.472678 | 7.2:+43654947 | MS.gene46016:CDS |
| GCACAAAGTGAGAATAGTAA+AGG | 0.474366 | 7.2:-43654510 | None:intergenic |
| CAGGGTTTAGTTCAATGAAA+GGG | 0.476609 | 7.2:+43655179 | MS.gene46016:CDS |
| TTTGAAGGAGAAGGATTCTA+GGG | 0.478771 | 7.2:+43654868 | MS.gene46016:CDS |
| TTCTGGATGTGGAGCATTGG+CGG | 0.497741 | 7.2:+43655381 | MS.gene46016:CDS |
| TTGATTATGATTCGAATTCG+AGG | 0.522982 | 7.2:+43655050 | MS.gene46016:CDS |
| GCAGGGTTTAGTTCAATGAA+AGG | 0.523068 | 7.2:+43655178 | MS.gene46016:CDS |
| CTTAAAACACAATCACTCCT+CGG | 0.529819 | 7.2:-43655334 | None:intergenic |
| TAAACCCCTTAAAGATGGTA+AGG | 0.536052 | 7.2:+43655519 | MS.gene46016:CDS |
| GGTATGGTGATTCTGGAAAT+GGG | 0.542258 | 7.2:+43654669 | MS.gene46016:CDS |
| TTCTTGTACTCACAATCTAC+CGG | 0.544159 | 7.2:-43655478 | None:intergenic |
| TCACTCCTCGGTTTATCTGC+CGG | 0.549332 | 7.2:-43655322 | None:intergenic |
| TGAGGATGAACCAAAGTTGT+TGG | 0.554967 | 7.2:+43654730 | MS.gene46016:CDS |
| ATGAAACAGGATCAAAAGCA+TGG | 0.563257 | 7.2:-43654541 | None:intergenic |
| AATATGGTTATAAGAAATGG+TGG | 0.569198 | 7.2:+43655010 | MS.gene46016:CDS |
| ACACACTCCTCAGGCACCAC+AGG | 0.573937 | 7.2:-43655448 | None:intergenic |
| TATTAGGGTTGTTGATGTTG+AGG | 0.574500 | 7.2:+43654712 | MS.gene46016:CDS |
| TACTCCTTACCATCTTTAAG+GGG | 0.584462 | 7.2:-43655523 | None:intergenic |
| TGGTTCTGGATGTGGAGCAT+TGG | 0.589112 | 7.2:+43655378 | MS.gene46016:CDS |
| GGCTGCATAACACACTCCTC+AGG | 0.595254 | 7.2:-43655457 | None:intergenic |
| TGAGGAGTGTGTTATGCAGC+CGG | 0.597347 | 7.2:+43655459 | MS.gene46016:CDS |
| TCGATATGGTCATTCAAAGC+CGG | 0.600728 | 7.2:+43655093 | MS.gene46016:CDS |
| TAGACGTCCTGTGGTGCCTG+AGG | 0.614399 | 7.2:+43655441 | MS.gene46016:CDS |
| AAAGGGTATGATGAAGAATG+TGG | 0.627375 | 7.2:-43654492 | None:intergenic |
| CTCCTCGGTTTATCTGCCGG+TGG | 0.636648 | 7.2:-43655319 | None:intergenic |
| AATGCAAAAGTTGTTAATGG+TGG | 0.654640 | 7.2:+43654626 | MS.gene46016:CDS |
| GTCGTATAATTGGACAACTG+AGG | 0.657756 | 7.2:+43655147 | MS.gene46016:CDS |
| TAAGAACACATATAGTCCAC+CGG | 0.658317 | 7.2:+43655303 | MS.gene46016:CDS |
| CATCGTCCACAAATAAAGCA+CGG | 0.676877 | 7.2:-43655410 | None:intergenic |
| TCAACCGATTGCCATAACAA+CGG | 0.707975 | 7.2:-43655121 | None:intergenic |
| GTCCACCGGCAGATAAACCG+AGG | 0.709595 | 7.2:+43655317 | MS.gene46016:CDS |
| GTTTGGTAATAGACGTCCTG+TGG | 0.727268 | 7.2:+43655432 | MS.gene46016:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAATATGGTTATAAGAAA+TGG | + | chr7.2:43655007-43655026 | MS.gene46016:CDS | 20.0% |
| !! | TATGTATAAGAAACCTATTA+GGG | + | chr7.2:43654697-43654716 | MS.gene46016:CDS | 20.0% |
| !! | TTATGTATAAGAAACCTATT+AGG | + | chr7.2:43654696-43654715 | MS.gene46016:CDS | 20.0% |
| ! | AATATGGTTATAAGAAATGG+TGG | + | chr7.2:43655010-43655029 | MS.gene46016:CDS | 25.0% |
| ! | ATCTTTACCAAAATCATTGA+AGG | - | chr7.2:43654573-43654592 | None:intergenic | 25.0% |
| !! | TAATAAGCTTTTGTATCCAT+CGG | - | chr7.2:43655280-43655299 | None:intergenic | 25.0% |
| !! | TCTTTTTCCTTCAATGATTT+TGG | + | chr7.2:43654563-43654582 | MS.gene46016:CDS | 25.0% |
| !!! | AAGTCTGTTTTAGGATTTTA+TGG | + | chr7.2:43654602-43654621 | MS.gene46016:CDS | 25.0% |
| !!! | AATAAGAGTTCTGATAGTTT+TGG | + | chr7.2:43654929-43654948 | MS.gene46016:CDS | 25.0% |
| !!! | TTTGAGTTTTCATTGTCTTT+TGG | + | chr7.2:43654770-43654789 | MS.gene46016:CDS | 25.0% |
| AATGCAAAAGTTGTTAATGG+TGG | + | chr7.2:43654626-43654645 | MS.gene46016:CDS | 30.0% | |
| ATTCTTGCTGCAATGATATT+TGG | + | chr7.2:43655358-43655377 | MS.gene46016:CDS | 30.0% | |
| CAATGTGTCTTCTGTTAATA+TGG | + | chr7.2:43654994-43655013 | MS.gene46016:CDS | 30.0% | |
| CACAAAGTGAGAATAGTAAA+GGG | - | chr7.2:43654512-43654531 | None:intergenic | 30.0% | |
| CCTAAAACAGACTTAAAGTT+TGG | - | chr7.2:43654596-43654615 | None:intergenic | 30.0% | |
| TTATTGCTTCAAGAGATGTT+AGG | + | chr7.2:43654906-43654925 | MS.gene46016:CDS | 30.0% | |
| TTGAAGGAAAAAGATGAAAC+AGG | - | chr7.2:43654557-43654576 | None:intergenic | 30.0% | |
| TTGATTATGATTCGAATTCG+AGG | + | chr7.2:43655050-43655069 | MS.gene46016:CDS | 30.0% | |
| ! | AAGCATGTTTTCTCTATTCA+TGG | + | chr7.2:43655212-43655231 | MS.gene46016:CDS | 30.0% |
| ! | CCAAACTTTAAGTCTGTTTT+AGG | + | chr7.2:43654593-43654612 | MS.gene46016:CDS | 30.0% |
| ! | TTTTCATTGTCTTTTGGTGA+TGG | + | chr7.2:43654776-43654795 | MS.gene46016:CDS | 30.0% |
| !!! | GTTTTTGGTAATGGTTCTTT+TGG | + | chr7.2:43654845-43654864 | MS.gene46016:CDS | 30.0% |
| !!! | TAATGGTTCTTTTGGTTTGA+AGG | + | chr7.2:43654853-43654872 | MS.gene46016:CDS | 30.0% |
| ATGAAACAGGATCAAAAGCA+TGG | - | chr7.2:43654544-43654563 | None:intergenic | 35.0% | |
| CTACTCCTTACCATCTTTAA+GGG | - | chr7.2:43655527-43655546 | None:intergenic | 35.0% | |
| CTTAAAACACAATCACTCCT+CGG | - | chr7.2:43655337-43655356 | None:intergenic | 35.0% | |
| GAAAATGACACCAACAACTT+TGG | - | chr7.2:43654743-43654762 | None:intergenic | 35.0% | |
| GCACAAAGTGAGAATAGTAA+AGG | - | chr7.2:43654513-43654532 | None:intergenic | 35.0% | |
| GGCAATGCAAAAGTTGTTAA+TGG | + | chr7.2:43654623-43654642 | MS.gene46016:CDS | 35.0% | |
| TAAACCCCTTAAAGATGGTA+AGG | + | chr7.2:43655519-43655538 | MS.gene46016:CDS | 35.0% | |
| TAAGAACACATATAGTCCAC+CGG | + | chr7.2:43655303-43655322 | MS.gene46016:CDS | 35.0% | |
| TAATCCGTTGTTATGGCAAT+CGG | + | chr7.2:43655117-43655136 | MS.gene46016:CDS | 35.0% | |
| TACTCCTTACCATCTTTAAG+GGG | - | chr7.2:43655526-43655545 | None:intergenic | 35.0% | |
| TATTAGGGTTGTTGATGTTG+AGG | + | chr7.2:43654712-43654731 | MS.gene46016:CDS | 35.0% | |
| TCAACATCAACAACCCTAAT+AGG | - | chr7.2:43654713-43654732 | None:intergenic | 35.0% | |
| TTCTTGTACTCACAATCTAC+CGG | - | chr7.2:43655481-43655500 | None:intergenic | 35.0% | |
| TTTGAAGGAGAAGGATTCTA+GGG | + | chr7.2:43654868-43654887 | MS.gene46016:CDS | 35.0% | |
| TTTGGTATGGCTATTGATGT+TGG | + | chr7.2:43654947-43654966 | MS.gene46016:CDS | 35.0% | |
| ! | AAAGGGTATGATGAAGAATG+TGG | - | chr7.2:43654495-43654514 | None:intergenic | 35.0% |
| ! | ATTCATGGAGCTTTGATGTA+AGG | + | chr7.2:43655227-43655246 | MS.gene46016:CDS | 35.0% |
| ! | CAGGGTTTAGTTCAATGAAA+GGG | + | chr7.2:43655179-43655198 | MS.gene46016:CDS | 35.0% |
| ! | CTTTATTTGTGGACGATGTT+TGG | + | chr7.2:43655415-43655434 | MS.gene46016:CDS | 35.0% |
| ! | GTTGATAAACCCCTTAAAGA+TGG | + | chr7.2:43655514-43655533 | MS.gene46016:CDS | 35.0% |
| !! | ATGATATTTGGTTCTGGATG+TGG | + | chr7.2:43655370-43655389 | MS.gene46016:CDS | 35.0% |
| !! | CGGTTGATTTGTCGTATAAT+TGG | + | chr7.2:43655137-43655156 | MS.gene46016:CDS | 35.0% |
| !! | GACACATTGATTCTCTTAAC+AGG | - | chr7.2:43654983-43655002 | None:intergenic | 35.0% |
| !! | GCTTTGATGTAAGGCATTTT+CGG | + | chr7.2:43655236-43655255 | MS.gene46016:CDS | 35.0% |
| !! | GCTTTTGTTATGGTTCCAAA+GGG | + | chr7.2:43654809-43654828 | MS.gene46016:CDS | 35.0% |
| !!! | AAATGGGTTGGCTTTTGTTA+TGG | + | chr7.2:43654799-43654818 | MS.gene46016:CDS | 35.0% |
| !!! | GAAGATGAGGTTTTTGGTAA+TGG | + | chr7.2:43654836-43654855 | MS.gene46016:CDS | 35.0% |
| !!! | GAGTTCTGATAGTTTTGGTA+TGG | + | chr7.2:43654934-43654953 | MS.gene46016:CDS | 35.0% |
| !!! | GGTTTTGAAGATGAGGTTTT+TGG | + | chr7.2:43654830-43654849 | MS.gene46016:CDS | 35.0% |
| !!! | TGTCTTTTGGTGATGGAAAT+GGG | + | chr7.2:43654783-43654802 | MS.gene46016:CDS | 35.0% |
| !!! | TTCTTTTGGTTTGAAGGAGA+AGG | + | chr7.2:43654859-43654878 | MS.gene46016:CDS | 35.0% |
| !!! | TTGTCTTTTGGTGATGGAAA+TGG | + | chr7.2:43654782-43654801 | MS.gene46016:CDS | 35.0% |
| ACCTCATCTTCAAAACCCTT+TGG | - | chr7.2:43654827-43654846 | None:intergenic | 40.0% | |
| CATCGTCCACAAATAAAGCA+CGG | - | chr7.2:43655413-43655432 | None:intergenic | 40.0% | |
| GTCGTATAATTGGACAACTG+AGG | + | chr7.2:43655147-43655166 | MS.gene46016:CDS | 40.0% | |
| GTTTGAAGGAGAAGGATTCT+AGG | + | chr7.2:43654867-43654886 | MS.gene46016:CDS | 40.0% | |
| TCAACCGATTGCCATAACAA+CGG | - | chr7.2:43655124-43655143 | None:intergenic | 40.0% | |
| TCGATATGGTCATTCAAAGC+CGG | + | chr7.2:43655093-43655112 | MS.gene46016:CDS | 40.0% | |
| TGAGGATGAACCAAAGTTGT+TGG | + | chr7.2:43654730-43654749 | MS.gene46016:CDS | 40.0% | |
| ! | ACAACTGAGGAGATTTTTGC+AGG | + | chr7.2:43655160-43655179 | MS.gene46016:CDS | 40.0% |
| ! | CAACTGAGGAGATTTTTGCA+GGG | + | chr7.2:43655161-43655180 | MS.gene46016:CDS | 40.0% |
| ! | GCAGGGTTTAGTTCAATGAA+AGG | + | chr7.2:43655178-43655197 | MS.gene46016:CDS | 40.0% |
| ! | GCTGCAATGATATTTGGTTC+TGG | + | chr7.2:43655364-43655383 | MS.gene46016:CDS | 40.0% |
| ! | GGTATGGTGATTCTGGAAAT+GGG | + | chr7.2:43654669-43654688 | MS.gene46016:CDS | 40.0% |
| ! | TTTTATGCATTCTGAGCCGA+TGG | + | chr7.2:43655261-43655280 | MS.gene46016:CDS | 40.0% |
| !! | CGTTTACCGTGCTTTATTTG+TGG | + | chr7.2:43655404-43655423 | MS.gene46016:CDS | 40.0% |
| !! | GAAGTTAGGTTGAGTCGATA+TGG | + | chr7.2:43655079-43655098 | MS.gene46016:CDS | 40.0% |
| !! | GGCTTTTGTTATGGTTCCAA+AGG | + | chr7.2:43654808-43654827 | MS.gene46016:CDS | 40.0% |
| !! | GTTCTGAAGTTCTGCTTTCT+GGG | + | chr7.2:43654648-43654667 | MS.gene46016:CDS | 40.0% |
| !! | TGCCATAACAACGGATTAAC+CGG | - | chr7.2:43655115-43655134 | None:intergenic | 40.0% |
| !!! | TCCAAAGGGTTTTGAAGATG+AGG | + | chr7.2:43654823-43654842 | MS.gene46016:CDS | 40.0% |
| !!! | TTTTGGTGATGGAAATGGGT+TGG | + | chr7.2:43654787-43654806 | MS.gene46016:CDS | 40.0% |
| AGCCGGTTAATCCGTTGTTA+TGG | + | chr7.2:43655110-43655129 | MS.gene46016:CDS | 45.0% | |
| CTTTCTGGGTATGGTGATTC+TGG | + | chr7.2:43654662-43654681 | MS.gene46016:CDS | 45.0% | |
| GAAGTTCTGCTTTCTGGGTA+TGG | + | chr7.2:43654653-43654672 | MS.gene46016:CDS | 45.0% | |
| ! | ATGGTGGAAAGTTGCATGCT+TGG | + | chr7.2:43655026-43655045 | MS.gene46016:CDS | 45.0% |
| ! | ATTCGAGGCGTTTGGAAGTT+AGG | + | chr7.2:43655065-43655084 | MS.gene46016:CDS | 45.0% |
| ! | GGGTATGGTGATTCTGGAAA+TGG | + | chr7.2:43654668-43654687 | MS.gene46016:CDS | 45.0% |
| ! | GTTTGGTAATAGACGTCCTG+TGG | + | chr7.2:43655432-43655451 | MS.gene46016:CDS | 45.0% |
| ! | TGATTCGAATTCGAGGCGTT+TGG | + | chr7.2:43655057-43655076 | MS.gene46016:CDS | 45.0% |
| !! | GGTTCTGAAGTTCTGCTTTC+TGG | + | chr7.2:43654647-43654666 | MS.gene46016:CDS | 45.0% |
| TCACTCCTCGGTTTATCTGC+CGG | - | chr7.2:43655325-43655344 | None:intergenic | 50.0% | |
| ! | TGAGGAGTGTGTTATGCAGC+CGG | + | chr7.2:43655459-43655478 | MS.gene46016:CDS | 50.0% |
| !! | TGGTTCTGGATGTGGAGCAT+TGG | + | chr7.2:43655378-43655397 | MS.gene46016:CDS | 50.0% |
| !! | TTCTGGATGTGGAGCATTGG+CGG | + | chr7.2:43655381-43655400 | MS.gene46016:CDS | 50.0% |
| GGCTGCATAACACACTCCTC+AGG | - | chr7.2:43655460-43655479 | None:intergenic | 55.0% | |
| ACACACTCCTCAGGCACCAC+AGG | - | chr7.2:43655451-43655470 | None:intergenic | 60.0% | |
| CTCCTCGGTTTATCTGCCGG+TGG | - | chr7.2:43655322-43655341 | None:intergenic | 60.0% | |
| GTCCACCGGCAGATAAACCG+AGG | + | chr7.2:43655317-43655336 | MS.gene46016:CDS | 60.0% | |
| TAGACGTCCTGTGGTGCCTG+AGG | + | chr7.2:43655441-43655460 | MS.gene46016:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 43654488 | 43655546 | 43654488 | ID=MS.gene46016 |
| chr7.2 | mRNA | 43654488 | 43655546 | 43654488 | ID=MS.gene46016.t1;Parent=MS.gene46016 |
| chr7.2 | exon | 43654488 | 43655546 | 43654488 | ID=MS.gene46016.t1.exon1;Parent=MS.gene46016.t1 |
| chr7.2 | CDS | 43654488 | 43655546 | 43654488 | ID=cds.MS.gene46016.t1;Parent=MS.gene46016.t1 |
| Gene Sequence |
| Protein sequence |
