AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049341


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049341.t1 MTR_3g095260 90.135 223 1 1 1 202 1 223 8.60e-143 398
MS.gene049341.t1 MTR_3g095240 85.586 222 11 1 1 201 1 222 4.73e-106 305
MS.gene049341.t1 MTR_3g095250 83.429 175 6 1 1 152 1 175 5.48e-98 284
MS.gene049341.t1 MTR_7g059030 66.197 142 48 0 1 142 1 142 9.27e-63 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049341.t1 AT1G76010 76.923 143 33 0 1 143 1 143 1.01e-71 221
MS.gene049341.t1 AT1G76010 76.923 143 33 0 1 143 1 143 1.01e-71 221
MS.gene049341.t1 AT1G20220 73.427 143 38 0 1 143 1 143 7.63e-69 213
MS.gene049341.t1 AT3G07030 65.185 135 47 0 1 135 1 135 1.58e-57 187
MS.gene049341.t1 AT3G07030 65.185 135 47 0 1 135 1 135 1.87e-57 186
MS.gene049341.t1 AT3G07030 65.185 135 47 0 1 135 1 135 1.87e-57 186
MS.gene049341.t1 AT3G07030 65.185 135 47 0 1 135 1 135 2.26e-57 186
MS.gene049341.t1 AT3G07030 62.500 144 52 1 1 144 1 142 2.49e-57 186

Find 57 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCATCAGAACACTCAAAT+TGG 0.306654 3.1:+75996822 MS.gene049341:CDS
CGGATCTCATTCTCGTTAAT+AGG 0.320322 3.1:-75995064 None:intergenic
GTTAATAGGACTATCTGCTT+TGG 0.320437 3.1:-75995050 None:intergenic
GCAGAGGGCGCGTCCGTGCA+TGG 0.343284 3.1:+75998439 MS.gene049341:CDS
TTAATAGGACTATCTGCTTT+GGG 0.344161 3.1:-75995049 None:intergenic
CAGAGGGCGCGTCCGTGCAT+GGG 0.370655 3.1:+75998440 MS.gene049341:CDS
GCTATGGTGCCCAGCCAGTT+GGG 0.398432 3.1:+75998490 MS.gene049341:CDS
CCATAGTCATACTGCCCAAC+TGG 0.407567 3.1:-75998504 None:intergenic
GGCTATGGTGCCCAGCCAGT+TGG 0.409114 3.1:+75998489 MS.gene049341:CDS
TCTTTATAGGAATGTACAAT+GGG 0.414498 3.1:+75998370 MS.gene049341:intron
CGTGGACGGGGACGGGGCTA+TGG 0.423409 3.1:+75998474 MS.gene049341:CDS
AATGATTACCGAGCTAATAA+AGG 0.426094 3.1:+75996700 MS.gene049341:CDS
TATGGTGATGGTTGGGATGG+TGG 0.427513 3.1:+75998402 MS.gene049341:CDS
TGGGATGGTGGACGTGGCTA+TGG 0.430740 3.1:+75998414 MS.gene049341:CDS
CTTTGGGTTTCTCCACCCTC+TGG 0.434627 3.1:-75995033 None:intergenic
CCAGTTGGGCAGTATGACTA+TGG 0.448789 3.1:+75998504 MS.gene049341:CDS
AGTCATACTGCCCAACTGGC+TGG 0.453355 3.1:-75998500 None:intergenic
GGACGTGGCTATGGTGGCAG+AGG 0.470972 3.1:+75998423 MS.gene049341:CDS
TTGTTTCAGAGAAGGATTGT+TGG 0.483573 3.1:+75996798 MS.gene049341:intron
TCGTCTTCATATTCATTCAA+AGG 0.488564 3.1:-75998053 None:intergenic
TATGGAATATGGTGATGGTT+GGG 0.502393 3.1:+75998395 MS.gene049341:CDS
TTTACTTGATCAGCAGGAAG+AGG 0.502624 3.1:-75998029 None:intergenic
TTCTTTATAGGAATGTACAA+TGG 0.517576 3.1:+75998369 MS.gene049341:intron
GAAATTGTTGTCAAAGCAAT+GGG 0.517640 3.1:+75996656 MS.gene049341:CDS
GATGGTTGGGATGGTGGACG+TGG 0.520396 3.1:+75998408 MS.gene049341:CDS
GTTTCTCATCCTTCCTTGAG+TGG 0.523264 3.1:-75995092 None:intergenic
TACGTTGTCAAAGAAAGAGC+TGG 0.523803 3.1:+75997022 MS.gene049341:CDS
GTCATACTGCCCAACTGGCT+GGG 0.531567 3.1:-75998499 None:intergenic
GTGTTCTTACCACGAGGTGC+AGG 0.539055 3.1:-75998543 None:intergenic
GAGCTGGATACATCCTCCAC+AGG 0.550506 3.1:+75997038 MS.gene049341:CDS
GAATATGGTGATGGTTGGGA+TGG 0.556459 3.1:+75998399 MS.gene049341:CDS
GTATGGAATATGGTGATGGT+TGG 0.556815 3.1:+75998394 MS.gene049341:CDS
GATGGTGGACGTGGCTATGG+TGG 0.564025 3.1:+75998417 MS.gene049341:CDS
GGAAGAAGGCCTTCTTCTAG+TGG 0.564318 3.1:-75996873 None:intergenic
CAACTGATATAACTGACACA+TGG 0.565866 3.1:+75996847 MS.gene049341:CDS
GACGTGGCTATGGTGGCAGA+GGG 0.566506 3.1:+75998424 MS.gene049341:CDS
AGAGGGCGCGTCCGTGCATG+GGG 0.580204 3.1:+75998441 MS.gene049341:CDS
GTTACTAACTTGGAAAAGAG+TGG 0.580916 3.1:-75995131 None:intergenic
TGAAATTGTTGTCAAAGCAA+TGG 0.584923 3.1:+75996655 MS.gene049341:CDS
AATGAATATGAAGACGAAGG+AGG 0.585192 3.1:+75998059 MS.gene049341:CDS
TCCTTCCTTGAGTGGTAATG+CGG 0.591117 3.1:-75995084 None:intergenic
ACTTGATCAGCAGGAAGAGG+AGG 0.596674 3.1:-75998026 None:intergenic
TTCTTACCACGAGGTGCAGG+TGG 0.600530 3.1:-75998540 None:intergenic
AACTGATATAACTGACACAT+GGG 0.600887 3.1:+75996848 MS.gene049341:CDS
GAGATCCGCATTACCACTCA+AGG 0.607382 3.1:+75995079 MS.gene049341:CDS
ACATGGGAACCACTAGAAGA+AGG 0.607454 3.1:+75996864 MS.gene049341:CDS
GATGGATAGGTACCAGAGGG+TGG 0.622819 3.1:+75995021 None:intergenic
TCCGCATTACCACTCAAGGA+AGG 0.635560 3.1:+75995083 MS.gene049341:CDS
TTGAATGAATATGAAGACGA+AGG 0.641784 3.1:+75998056 MS.gene049341:CDS
TTTATAGGAATGTACAATGG+GGG 0.652876 3.1:+75998372 MS.gene049341:intron
GAAAAGCATGACCCCATGCA+CGG 0.654179 3.1:-75998452 None:intergenic
TGAAAGTACATACCCTGTGG+AGG 0.656547 3.1:-75997051 None:intergenic
TTCAGATGGATAGGTACCAG+AGG 0.660290 3.1:+75995017 None:intergenic
TCAGATGGATAGGTACCAGA+GGG 0.661722 3.1:+75995018 None:intergenic
AGCTGGATACATCCTCCACA+GGG 0.668533 3.1:+75997039 MS.gene049341:CDS
CTTTATAGGAATGTACAATG+GGG 0.683519 3.1:+75998371 MS.gene049341:intron
GATGCACCACCTGCACCTCG+TGG 0.692747 3.1:+75998534 MS.gene049341:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTGAAAGAAATTTTAA+AGG - chr3.1:75995572-75995591 None:intergenic 10.0%
!!! AAATTGAAAGAAATTTTAAA+GGG - chr3.1:75995571-75995590 None:intergenic 10.0%
!!! TATTAACTAATGATATTTTT+TGG - chr3.1:75995711-75995730 None:intergenic 10.0%
!!! TTAAAATTTCTTTCAATTTT+TGG + chr3.1:75995572-75995591 MS.gene049341:intron 10.0%
!!! TTTTTAATTTTATTCTTTGT+TGG + chr3.1:75997960-75997979 MS.gene049341:intron 10.0%
!! AATAACCCTTAAAAATTAAA+GGG + chr3.1:75995501-75995520 MS.gene049341:intron 15.0%
!! AATTGAAACAAAAAGTTTAA+AGG - chr3.1:75995599-75995618 None:intergenic 15.0%
!! TAATAACCCTTAAAAATTAA+AGG + chr3.1:75995500-75995519 MS.gene049341:intron 15.0%
!!! ATTTAACCCTTTAATTTTTA+AGG - chr3.1:75995510-75995529 None:intergenic 15.0%
!!! TTTAACCCTTTAATTTTTAA+GGG - chr3.1:75995509-75995528 None:intergenic 15.0%
!! AAAAAAAAAAACACTAAAGC+AGG - chr3.1:75995628-75995647 None:intergenic 20.0%
!! AAAAAAAAAACACTAAAGCA+GGG - chr3.1:75995627-75995646 None:intergenic 20.0%
!! AAAAGATAAAATAAGTACAG+AGG - chr3.1:75997777-75997796 None:intergenic 20.0%
!! ATGTAACAAAAGAAGTTATT+TGG - chr3.1:75995675-75995694 None:intergenic 20.0%
!! GCTAAATATATAGTTAAGAA+TGG + chr3.1:75997328-75997347 MS.gene049341:intron 20.0%
!! TATTAAGTAAACATTAACCA+CGG - chr3.1:75996514-75996533 None:intergenic 20.0%
!! TTAAGTTATTGTTACTAACT+TGG - chr3.1:75995144-75995163 None:intergenic 20.0%
!! TTCGATATTAAAAAGACAAA+GGG - chr3.1:75997569-75997588 None:intergenic 20.0%
!!! AACTATAATTTTGAAACAGA+AGG + chr3.1:75998153-75998172 MS.gene049341:intron 20.0%
!!! AATAATTTTTATCTTGCTAC+AGG + chr3.1:75997364-75997383 MS.gene049341:intron 20.0%
!!! GGTTATTAAACTTGAATTTT+TGG - chr3.1:75995488-75995507 None:intergenic 20.0%
!!! GTTTATGTATTTTAGAAACA+AGG + chr3.1:75997598-75997617 MS.gene049341:intron 20.0%
!!! TAAACTTGAATTTTTGGTTT+AGG - chr3.1:75995482-75995501 None:intergenic 20.0%
!!! TCTGTACTTATTTTATCTTT+TGG + chr3.1:75997776-75997795 MS.gene049341:intron 20.0%
!!! TCTGTTTTCTGTAATTATTA+AGG + chr3.1:75997869-75997888 MS.gene049341:intron 20.0%
!!! TTTTATGACATATAACTGAT+AGG - chr3.1:75995848-75995867 None:intergenic 20.0%
! AAAAATAACTAAGCCTATCA+AGG - chr3.1:75997133-75997152 None:intergenic 25.0%
! AAAATAACTAAGCCTATCAA+GGG - chr3.1:75997132-75997151 None:intergenic 25.0%
! AAAGCATATAGAACAAAATG+TGG - chr3.1:75995388-75995407 None:intergenic 25.0%
! AAAGTGAAATAAGAAAGTGA+TGG - chr3.1:75996460-75996479 None:intergenic 25.0%
! AAATACAATAAACCTAGACA+AGG + chr3.1:75996141-75996160 MS.gene049341:intron 25.0%
! AAGTGAAATAAGAAAGTGAT+GGG - chr3.1:75996459-75996478 None:intergenic 25.0%
! AATACAATAAACCTAGACAA+GGG + chr3.1:75996142-75996161 MS.gene049341:intron 25.0%
! CAAATCTTACAGAATTACAA+CGG - chr3.1:75997293-75997312 None:intergenic 25.0%
! CTACACAATCTATTCTTTAT+AGG + chr3.1:75998357-75998376 MS.gene049341:intron 25.0%
! GTAAAGGTGATATATTTAGA+GGG - chr3.1:75995540-75995559 None:intergenic 25.0%
! GTTCGATATTAAAAAGACAA+AGG - chr3.1:75997570-75997589 None:intergenic 25.0%
! GTTGTAATTCTGTAAGATTT+GGG + chr3.1:75997292-75997311 MS.gene049341:intron 25.0%
! TCGATATTAAAAAGACAAAG+GGG - chr3.1:75997568-75997587 None:intergenic 25.0%
! TCTTTATAGGAATGTACAAT+GGG + chr3.1:75998370-75998389 MS.gene049341:intron 25.0%
! TTACTTGAATGTGTTATCTT+TGG + chr3.1:75997646-75997665 MS.gene049341:intron 25.0%
! TTCTTTATAGGAATGTACAA+TGG + chr3.1:75998369-75998388 MS.gene049341:intron 25.0%
! TTGTAATTCTGTAAGATTTG+GGG + chr3.1:75997293-75997312 MS.gene049341:intron 25.0%
! TTTGCTTACTTAACTGTAAT+CGG + chr3.1:75998253-75998272 MS.gene049341:intron 25.0%
!! AAAAAGGTATAAAGGATACA+AGG - chr3.1:75995459-75995478 None:intergenic 25.0%
!! AAAATCGAAGGAATTTTTGT+AGG + chr3.1:75995932-75995951 MS.gene049341:intron 25.0%
!! AAATCGAAGGAATTTTTGTA+GGG + chr3.1:75995933-75995952 MS.gene049341:intron 25.0%
!! ACAAAAATTCCTTCGATTTT+TGG - chr3.1:75995932-75995951 None:intergenic 25.0%
!! TTTGATTGCTATTAATGCAT+TGG + chr3.1:75997828-75997847 MS.gene049341:intron 25.0%
!!! CTTAAAGTTGGTATATTTAG+AGG + chr3.1:75995963-75995982 MS.gene049341:intron 25.0%
!!! GAATTTTTGGTTTAGGAAAA+AGG - chr3.1:75995475-75995494 None:intergenic 25.0%
!!! TGGTTTTATATAAATGTGAC+CGG - chr3.1:75996096-75996115 None:intergenic 25.0%
!!! TTTTAAAAGCTCAGAAATTG+TGG - chr3.1:75997468-75997487 None:intergenic 25.0%
AACCAAAGAATAAGCAAATC+AGG - chr3.1:75995306-75995325 None:intergenic 30.0%
AACTGATATAACTGACACAT+GGG + chr3.1:75996848-75996867 MS.gene049341:CDS 30.0%
AAGATAGAAAACAGAAGTGA+TGG + chr3.1:75996281-75996300 MS.gene049341:intron 30.0%
AATGATTACCGAGCTAATAA+AGG + chr3.1:75996700-75996719 MS.gene049341:CDS 30.0%
AGTGAAATAAGAAAGTGATG+GGG - chr3.1:75996458-75996477 None:intergenic 30.0%
ATAGGACGTTAAAATAGCAT+TGG - chr3.1:75995830-75995849 None:intergenic 30.0%
ATGATTGAAACATAGCATCA+TGG + chr3.1:75996117-75996136 MS.gene049341:intron 30.0%
ATTCAATGTCAATACATGCA+TGG + chr3.1:75995230-75995249 MS.gene049341:intron 30.0%
ATTCTTTGGTTGAAATAGCT+TGG + chr3.1:75995315-75995334 MS.gene049341:intron 30.0%
ATTGTGGTTCAATAAAACCT+TGG - chr3.1:75997452-75997471 None:intergenic 30.0%
ATTTAGAGACCAAAAATCGA+AGG + chr3.1:75995920-75995939 MS.gene049341:intron 30.0%
CAAATGATTTATGTGTGCAT+GGG + chr3.1:75996929-75996948 MS.gene049341:intron 30.0%
CATACTTGTAAATCATGACT+GGG - chr3.1:75997895-75997914 None:intergenic 30.0%
CGTAAAGGTGATATATTTAG+AGG - chr3.1:75995541-75995560 None:intergenic 30.0%
CGTTGTAATTCTGTAAGATT+TGG + chr3.1:75997291-75997310 MS.gene049341:intron 30.0%
CTTTATAGGAATGTACAATG+GGG + chr3.1:75998371-75998390 MS.gene049341:intron 30.0%
GAAATTGTTGTCAAAGCAAT+GGG + chr3.1:75996656-75996675 MS.gene049341:CDS 30.0%
GATGCTATGTTTCAATCATT+TGG - chr3.1:75996116-75996135 None:intergenic 30.0%
TAGGGACTAAAACTTAAAGT+TGG + chr3.1:75995951-75995970 MS.gene049341:intron 30.0%
TCAAATGATTTATGTGTGCA+TGG + chr3.1:75996928-75996947 MS.gene049341:intron 30.0%
TCGTCTTCATATTCATTCAA+AGG - chr3.1:75998056-75998075 None:intergenic 30.0%
TGAAATTGTTGTCAAAGCAA+TGG + chr3.1:75996655-75996674 MS.gene049341:CDS 30.0%
TGTCATAAAAAAATGTCGCT+TGG + chr3.1:75995858-75995877 MS.gene049341:intron 30.0%
TGTTGAATCAGAATTGAGAA+AGG + chr3.1:75997425-75997444 MS.gene049341:intron 30.0%
TTAAAGGGACTAAAACGTAA+AGG - chr3.1:75995556-75995575 None:intergenic 30.0%
TTAATAGGACTATCTGCTTT+GGG - chr3.1:75995052-75995071 None:intergenic 30.0%
TTCAATGTCAATACATGCAT+GGG + chr3.1:75995231-75995250 MS.gene049341:intron 30.0%
TTGAATGAATATGAAGACGA+AGG + chr3.1:75998056-75998075 MS.gene049341:CDS 30.0%
TTTATAGGAATGTACAATGG+GGG + chr3.1:75998372-75998391 MS.gene049341:intron 30.0%
! ATCACTTCTGTTTTCTATCT+TGG - chr3.1:75996282-75996301 None:intergenic 30.0%
! GGTTTAGGAAAAAGGTATAA+AGG - chr3.1:75995467-75995486 None:intergenic 30.0%
!! AAGAAGTGTATGTGTTTTAG+AGG + chr3.1:75995268-75995287 MS.gene049341:intron 30.0%
!!! TGTCTAATATGCCATTTTTG+TGG - chr3.1:75996393-75996412 None:intergenic 30.0%
AAAAATGCCAACCAATTCAC+TGG - chr3.1:75996746-75996765 None:intergenic 35.0%
AATGAATATGAAGACGAAGG+AGG + chr3.1:75998059-75998078 MS.gene049341:CDS 35.0%
ACAATATCATGTAAAGAGCC+TGG + chr3.1:75996176-75996195 MS.gene049341:intron 35.0%
AGAGGAAACAAAAAGCCATA+CGG - chr3.1:75996897-75996916 None:intergenic 35.0%
ATTACCGAGCTAATAAAGGT+GGG + chr3.1:75996704-75996723 MS.gene049341:intron 35.0%
ATTTCTATTCACCCTTGTCT+AGG - chr3.1:75996156-75996175 None:intergenic 35.0%
CAACTGATATAACTGACACA+TGG + chr3.1:75996847-75996866 MS.gene049341:CDS 35.0%
CATTTGACAAGATAGCATAG+AGG - chr3.1:75996915-75996934 None:intergenic 35.0%
CCAGTCATGATTTACAAGTA+TGG + chr3.1:75997893-75997912 MS.gene049341:intron 35.0%
CCATACTTGTAAATCATGAC+TGG - chr3.1:75997896-75997915 None:intergenic 35.0%
CTTAGTCAACTCCACAAAAA+TGG + chr3.1:75996379-75996398 MS.gene049341:intron 35.0%
CTTTCTACTTGTTTCAGAGA+AGG + chr3.1:75996790-75996809 MS.gene049341:intron 35.0%
GATATCTCTATCCAGTGAAT+TGG + chr3.1:75996732-75996751 MS.gene049341:intron 35.0%
GCAATCAAAAGCGAAACTAA+AGG - chr3.1:75997817-75997836 None:intergenic 35.0%
GGAACATGAAACGTAAACAT+TGG - chr3.1:75995654-75995673 None:intergenic 35.0%
GTGAAATAAGAAAGTGATGG+GGG - chr3.1:75996457-75996476 None:intergenic 35.0%
GTTAATAGGACTATCTGCTT+TGG - chr3.1:75995053-75995072 None:intergenic 35.0%
GTTACTAACTTGGAAAAGAG+TGG - chr3.1:75995134-75995153 None:intergenic 35.0%
TCAATGTCAATACATGCATG+GGG + chr3.1:75995232-75995251 MS.gene049341:intron 35.0%
TGATATCTGCATGAGAAATC+AGG - chr3.1:75998005-75998024 None:intergenic 35.0%
TTGGTTGAAATAGCTTGGAT+TGG + chr3.1:75995320-75995339 MS.gene049341:intron 35.0%
TTGTGTTTACTTGCTCAGTT+TGG + chr3.1:75996968-75996987 MS.gene049341:intron 35.0%
TTGTTTCAGAGAAGGATTGT+TGG + chr3.1:75996798-75996817 MS.gene049341:intron 35.0%
! AAAGGTTTTACTTGATCAGC+AGG - chr3.1:75998038-75998057 None:intergenic 35.0%
! ATTGTTACTCTCCTTTTACC+AGG - chr3.1:75996197-75996216 None:intergenic 35.0%
! CATTTTTGTGGAGTTGACTA+AGG - chr3.1:75996381-75996400 None:intergenic 35.0%
! TCAACATGTGTGTTTTCTGT+AGG + chr3.1:75996619-75996638 MS.gene049341:intron 35.0%
! TGTATATTTTCGTTCTTCCG+TGG + chr3.1:75996494-75996513 MS.gene049341:intron 35.0%
!! CTGACAGTCTATTTCTATCT+TGG - chr3.1:75996330-75996349 None:intergenic 35.0%
!! TATGGAATATGGTGATGGTT+GGG + chr3.1:75998395-75998414 MS.gene049341:CDS 35.0%
!! TGCCTGATTTGCTTATTCTT+TGG + chr3.1:75995301-75995320 MS.gene049341:intron 35.0%
ACAAAAAGCCATACGGAAGA+AGG - chr3.1:75996890-75996909 None:intergenic 40.0%
ACACTATCTTCAGTCGTTGT+GGG + chr3.1:75996410-75996429 MS.gene049341:intron 40.0%
ACTAAGCCTATCAAGGGATA+AGG - chr3.1:75997126-75997145 None:intergenic 40.0%
CAATGTCAATACATGCATGG+GGG + chr3.1:75995233-75995252 MS.gene049341:intron 40.0%
CATGTAAAGAGCCTGGTAAA+AGG + chr3.1:75996183-75996202 MS.gene049341:intron 40.0%
CGGATCTCATTCTCGTTAAT+AGG - chr3.1:75995067-75995086 None:intergenic 40.0%
CTAAGGCCTAAAACCTAAGA+TGG - chr3.1:75996364-75996383 None:intergenic 40.0%
CTGCATCAGAACACTCAAAT+TGG + chr3.1:75996822-75996841 MS.gene049341:CDS 40.0%
CTTACAGAATTACAACGGCT+AGG - chr3.1:75997288-75997307 None:intergenic 40.0%
GATTACCGAGCTAATAAAGG+TGG + chr3.1:75996703-75996722 MS.gene049341:intron 40.0%
GGTGTTCACAAAACAAGAGA+CGG - chr3.1:75997547-75997566 None:intergenic 40.0%
GTGTTCACAAAACAAGAGAC+GGG - chr3.1:75997546-75997565 None:intergenic 40.0%
TACGTTGTCAAAGAAAGAGC+TGG + chr3.1:75997022-75997041 MS.gene049341:CDS 40.0%
TAGATGCCTTATCCCTTGAT+AGG + chr3.1:75997117-75997136 MS.gene049341:intron 40.0%
TCAGAATTGAGAAAGGACCA+AGG + chr3.1:75997432-75997451 MS.gene049341:intron 40.0%
TCTCTATCCAGTGAATTGGT+TGG + chr3.1:75996736-75996755 MS.gene049341:intron 40.0%
TTACCGAGCTAATAAAGGTG+GGG + chr3.1:75996705-75996724 MS.gene049341:intron 40.0%
TTTACTTGATCAGCAGGAAG+AGG - chr3.1:75998032-75998051 None:intergenic 40.0%
! AAATAAGAAAGTGATGGGGG+AGG - chr3.1:75996454-75996473 None:intergenic 40.0%
! AAATAGACTGTCAGAGCATC+TGG + chr3.1:75996336-75996355 MS.gene049341:intron 40.0%
! ACCTTTGACTTCAAACAGAG+CGG + chr3.1:75997731-75997750 MS.gene049341:intron 40.0%
! CTGGTACCATCTTAGGTTTT+AGG + chr3.1:75996355-75996374 MS.gene049341:intron 40.0%
! GTGTGTTTTCTGTAGGAGAA+AGG + chr3.1:75996626-75996645 MS.gene049341:intron 40.0%
! TACAATGGGGGTATGGAATA+TGG + chr3.1:75998384-75998403 MS.gene049341:CDS 40.0%
! TCATGAAAGTACATACCCTG+TGG - chr3.1:75997057-75997076 None:intergenic 40.0%
! TTCTGTAAGATTTGGGGTCA+CGG + chr3.1:75997299-75997318 MS.gene049341:intron 40.0%
!! GTATGGAATATGGTGATGGT+TGG + chr3.1:75998394-75998413 MS.gene049341:CDS 40.0%
ACATGGGAACCACTAGAAGA+AGG + chr3.1:75996864-75996883 MS.gene049341:CDS 45.0%
AGGAATGTACAATGGGGGTA+TGG + chr3.1:75998377-75998396 MS.gene049341:intron 45.0%
AGTGCACTGTCTAGAAAGAC+CGG + chr3.1:75996074-75996093 MS.gene049341:intron 45.0%
GACACTATCTTCAGTCGTTG+TGG + chr3.1:75996409-75996428 MS.gene049341:intron 45.0%
GTTTCTCATCCTTCCTTGAG+TGG - chr3.1:75995095-75995114 None:intergenic 45.0%
TACCGAGCTAATAAAGGTGG+GGG + chr3.1:75996706-75996725 MS.gene049341:intron 45.0%
TTGAAACAGAAGGCTCACCA+AGG + chr3.1:75998163-75998182 MS.gene049341:intron 45.0%
! AAAGTGATGGGGGAGGATAT+TGG - chr3.1:75996447-75996466 None:intergenic 45.0%
! AAGTGATGGGGGAGGATATT+GGG - chr3.1:75996446-75996465 None:intergenic 45.0%
! ACCGCTCTGTTTGAAGTCAA+AGG - chr3.1:75997735-75997754 None:intergenic 45.0%
! AGAGCATCTGGTACCATCTT+AGG + chr3.1:75996348-75996367 MS.gene049341:intron 45.0%
! GTGCATGGGTGTGATTGTTT+TGG + chr3.1:75996943-75996962 MS.gene049341:intron 45.0%
! TCCTTCCTTGAGTGGTAATG+CGG - chr3.1:75995087-75995106 None:intergenic 45.0%
! TGAAAGTACATACCCTGTGG+AGG - chr3.1:75997054-75997073 None:intergenic 45.0%
!! GAATATGGTGATGGTTGGGA+TGG + chr3.1:75998399-75998418 MS.gene049341:CDS 45.0%
AAAACAAGAGACGGGTGAGG+TGG - chr3.1:75997538-75997557 None:intergenic 50.0%
AAACAAGAGACGGGTGAGGT+GGG - chr3.1:75997537-75997556 None:intergenic 50.0%
ACCCCCCACCTTTATTAGCT+CGG - chr3.1:75996711-75996730 None:intergenic 50.0%
ACCGAGCTAATAAAGGTGGG+GGG + chr3.1:75996707-75996726 MS.gene049341:intron 50.0%
ACTTGATCAGCAGGAAGAGG+AGG - chr3.1:75998029-75998048 None:intergenic 50.0%
AGCTGGATACATCCTCCACA+GGG + chr3.1:75997039-75997058 MS.gene049341:CDS 50.0%
CACAAAACAAGAGACGGGTG+AGG - chr3.1:75997541-75997560 None:intergenic 50.0%
CCAGTTGGGCAGTATGACTA+TGG + chr3.1:75998504-75998523 MS.gene049341:CDS 50.0%
CCATAGTCATACTGCCCAAC+TGG - chr3.1:75998507-75998526 None:intergenic 50.0%
GAAGAAGGCCTTCTTCCGTA+TGG + chr3.1:75996879-75996898 MS.gene049341:intron 50.0%
GAGATCCGCATTACCACTCA+AGG + chr3.1:75995079-75995098 MS.gene049341:CDS 50.0%
GGAAGAAGGCCTTCTTCTAG+TGG - chr3.1:75996876-75996895 None:intergenic 50.0%
TCCGCATTACCACTCAAGGA+AGG + chr3.1:75995083-75995102 MS.gene049341:CDS 50.0%
TCTTCAGTCGTTGTGGGACT+TGG + chr3.1:75996416-75996435 MS.gene049341:intron 50.0%
! GAAAAGCATGACCCCATGCA+CGG - chr3.1:75998455-75998474 None:intergenic 50.0%
! GGGGGTATGGAATATGGTGA+TGG + chr3.1:75998390-75998409 MS.gene049341:CDS 50.0%
!! TATGGTGATGGTTGGGATGG+TGG + chr3.1:75998402-75998421 MS.gene049341:CDS 50.0%
AACAAGAGACGGGTGAGGTG+GGG - chr3.1:75997536-75997555 None:intergenic 55.0%
AAGGATGCGAGGAAGGGAAG+GGG + chr3.1:75998182-75998201 MS.gene049341:intron 55.0%
AGTCATACTGCCCAACTGGC+TGG - chr3.1:75998503-75998522 None:intergenic 55.0%
CAAGGATGCGAGGAAGGGAA+GGG + chr3.1:75998181-75998200 MS.gene049341:intron 55.0%
CTCACCAAGGATGCGAGGAA+GGG + chr3.1:75998176-75998195 MS.gene049341:intron 55.0%
GAGCTGGATACATCCTCCAC+AGG + chr3.1:75997038-75997057 MS.gene049341:CDS 55.0%
GGTGAGGTGGGGGATAGATA+AGG - chr3.1:75997525-75997544 None:intergenic 55.0%
GTCATACTGCCCAACTGGCT+GGG - chr3.1:75998502-75998521 None:intergenic 55.0%
TACATGCATGGGGGTCGTGT+TGG + chr3.1:75995242-75995261 MS.gene049341:intron 55.0%
! ATGCTTTTCGTGGACGGGGA+CGG + chr3.1:75998466-75998485 MS.gene049341:CDS 55.0%
! CTTTGGGTTTCTCCACCCTC+TGG - chr3.1:75995036-75995055 None:intergenic 55.0%
! GCATGGGGTCATGCTTTTCG+TGG + chr3.1:75998456-75998475 MS.gene049341:CDS 55.0%
! GGGGTCATGCTTTTCGTGGA+CGG + chr3.1:75998460-75998479 MS.gene049341:CDS 55.0%
! GGGTCATGCTTTTCGTGGAC+GGG + chr3.1:75998461-75998480 MS.gene049341:CDS 55.0%
! GGTCATGCTTTTCGTGGACG+GGG + chr3.1:75998462-75998481 MS.gene049341:CDS 55.0%
AAGGGAAGGGGTCGTGGAAG+GGG + chr3.1:75998194-75998213 MS.gene049341:intron 60.0%
ACAAGAGACGGGTGAGGTGG+GGG - chr3.1:75997535-75997554 None:intergenic 60.0%
CCAAGGATGCGAGGAAGGGA+AGG + chr3.1:75998180-75998199 MS.gene049341:intron 60.0%
CCTTCCCTTCCTCGCATCCT+TGG - chr3.1:75998183-75998202 None:intergenic 60.0%
GAAGGCTCACCAAGGATGCG+AGG + chr3.1:75998171-75998190 MS.gene049341:intron 60.0%
GAAGGGAAGGGGTCGTGGAA+GGG + chr3.1:75998193-75998212 MS.gene049341:intron 60.0%
GACGTGGCTATGGTGGCAGA+GGG + chr3.1:75998424-75998443 MS.gene049341:CDS 60.0%
GCTATGGTGCCCAGCCAGTT+GGG + chr3.1:75998490-75998509 MS.gene049341:CDS 60.0%
GCTCACCAAGGATGCGAGGA+AGG + chr3.1:75998175-75998194 MS.gene049341:intron 60.0%
! TGCTTTTCGTGGACGGGGAC+GGG + chr3.1:75998467-75998486 MS.gene049341:CDS 60.0%
!! GATGGTGGACGTGGCTATGG+TGG + chr3.1:75998417-75998436 MS.gene049341:CDS 60.0%
!! GATGGTTGGGATGGTGGACG+TGG + chr3.1:75998408-75998427 MS.gene049341:CDS 60.0%
!! TGGGATGGTGGACGTGGCTA+TGG + chr3.1:75998414-75998433 MS.gene049341:CDS 60.0%
AAGGGGTCGTGGAAGGGGCA+GGG + chr3.1:75998199-75998218 MS.gene049341:intron 65.0%
AGGGGCAGGGGTAGAGGTAG+AGG + chr3.1:75998212-75998231 MS.gene049341:intron 65.0%
GGAAGGGAAGGGGTCGTGGA+AGG + chr3.1:75998192-75998211 MS.gene049341:intron 65.0%
GGACGTGGCTATGGTGGCAG+AGG + chr3.1:75998423-75998442 MS.gene049341:CDS 65.0%
GGCTATGGTGCCCAGCCAGT+TGG + chr3.1:75998489-75998508 MS.gene049341:CDS 65.0%
! GCTTTTCGTGGACGGGGACG+GGG + chr3.1:75998468-75998487 MS.gene049341:CDS 65.0%
AGGGGTCGTGGAAGGGGCAG+GGG + chr3.1:75998200-75998219 MS.gene049341:intron 70.0%
CGTGGAAGGGGCAGGGGTAG+AGG + chr3.1:75998206-75998225 MS.gene049341:intron 70.0%
GAAGGGGTCGTGGAAGGGGC+AGG + chr3.1:75998198-75998217 MS.gene049341:intron 70.0%
GCGAGGAAGGGAAGGGGTCG+TGG + chr3.1:75998188-75998207 MS.gene049341:intron 70.0%
! AGAGGGCGCGTCCGTGCATG+GGG + chr3.1:75998441-75998460 MS.gene049341:CDS 70.0%
! CAGAGGGCGCGTCCGTGCAT+GGG + chr3.1:75998440-75998459 MS.gene049341:CDS 70.0%
CGTGGACGGGGACGGGGCTA+TGG + chr3.1:75998474-75998493 MS.gene049341:CDS 75.0%
! GCAGAGGGCGCGTCCGTGCA+TGG + chr3.1:75998439-75998458 MS.gene049341:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 75995022 75998555 75995022 ID=MS.gene049341
chr3.1 mRNA 75995022 75998555 75995022 ID=MS.gene049341.t1;Parent=MS.gene049341
chr3.1 exon 75995022 75995144 75995022 ID=MS.gene049341.t1.exon1;Parent=MS.gene049341.t1
chr3.1 CDS 75995022 75995144 75995022 ID=cds.MS.gene049341.t1;Parent=MS.gene049341.t1
chr3.1 exon 75996641 75996721 75996641 ID=MS.gene049341.t1.exon2;Parent=MS.gene049341.t1
chr3.1 CDS 75996641 75996721 75996641 ID=cds.MS.gene049341.t1;Parent=MS.gene049341.t1
chr3.1 exon 75996807 75996895 75996807 ID=MS.gene049341.t1.exon3;Parent=MS.gene049341.t1
chr3.1 CDS 75996807 75996895 75996807 ID=cds.MS.gene049341.t1;Parent=MS.gene049341.t1
chr3.1 exon 75996986 75997060 75996986 ID=MS.gene049341.t1.exon4;Parent=MS.gene049341.t1
chr3.1 CDS 75996986 75997060 75996986 ID=cds.MS.gene049341.t1;Parent=MS.gene049341.t1
chr3.1 exon 75998019 75998080 75998019 ID=MS.gene049341.t1.exon5;Parent=MS.gene049341.t1
chr3.1 CDS 75998019 75998080 75998019 ID=cds.MS.gene049341.t1;Parent=MS.gene049341.t1
chr3.1 exon 75998379 75998555 75998379 ID=MS.gene049341.t1.exon6;Parent=MS.gene049341.t1
chr3.1 CDS 75998379 75998555 75998379 ID=cds.MS.gene049341.t1;Parent=MS.gene049341.t1
Gene Sequence

>MS.gene049341

ATGGATAGGTACCAGAGGGTGGAGAAACCCAAAGCAGATAGTCCTATTAACGAGAATGAGATCCGCATTACCACTCAAGGAAGGATGAGAAACTATATCACTTATGCTACCACTCTTTTCCAAGTTAGTAACAATAACTTAATGTGTTCTTATTATTAGATCATAACAATACATACTTGAAAAAGATCACACAATTCAATTCAATTCAATTCAATGTCAATACATGCATGGGGGTCGTGTTGGTATAAGAAGTGTATGTGTTTTAGAGGTTTCGATTAATGCCTGATTTGCTTATTCTTTGGTTGAAATAGCTTGGATTGGATTAATGCAAGTGAAATTTGTGTTTTCAGATTTTTAATACTTCCACATTTTGTTCTATATGCTTTTTGATAGTCAAAAAAACTATATTCTGATACAAAATACTAGTGTTTGATCCTTGTATCCTTTATACCTTTTTCCTAAACCAAAAATTCAAGTTTAATAACCCTTAAAAATTAAAGGGTTAAATATGTTTTCCCTCTAAATATATCACCTTTACGTTTTAGTCCCTTTAAAATTTCTTTCAATTTTTGGTCCTTTAAACTTTTTGTTTCAATTTTAGTCCCTGCTTTAGTGTTTTTTTTTTTTTACCAATGTTTACGTTTCATGTTCCAAATAACTTCTTTTGTTACATATCATTGATAAGACCAAAAAATATCATTAGTTAATAATCTAACATTTAAACTTAAATTTAACAATTTAATCTTTAACTTGAAATTATAAATAAATCAGTAAAGACTAAAGATTATATAGTTAAATTATTAATCCAATGCTATTTTAACGTCCTATCAGTTATATGTCATAAAAAAATGTCGCTTGGAACACGAAACGTGAACTCTTGTAAAATTGAAATCAGAAAATTTAGAGACCAAAAATCGAAGGAATTTTTGTAGGGACTAAAACTTAAAGTTGGTATATTTAGAGGAACTATAAACATATTTATTAATATGTTAGTAATGAATAAAATCTCATATGAATGACTCATAATGTAGTGTCTAGACTGATAAAAAAAGAGTGCACTGTCTAGAAAGACCGGTCACATTTATATAAAACCAAATGATTGAAACATAGCATCATGGAAAATACAATAAACCTAGACAAGGGTGAATAGAAATACAATATCATGTAAAGAGCCTGGTAAAAGGAGAGTAACAATGAATTTACAAAATCAATAGTGAAAAGAATTTCTTGAAAAAAAAATTTGATGCAAGAGAGAGTCCAAGATAGAAAACAGAAGTGATGGTGACAATCATGAGAAAACAGAGTCCAAGATAGAAATAGACTGTCAGAGCATCTGGTACCATCTTAGGTTTTAGGCCTTAGTCAACTCCACAAAAATGGCATATTAGACACTATCTTCAGTCGTTGTGGGACTTGGTTTTCCCAATATCCTCCCCCATCACTTTCTTATTTCACTTTAGTCATGTTTTCTCTGTATATTTTCGTTCTTCCGTGGTTAATGTTTACTTAATAAATTATACAATGATACATGAATGCAAGTATTATTTTATCTAGAATCAACTAATATTTTGCAATTTTTTCTGACTTTTAATATTGATCAACATGTGTGTTTTCTGTAGGAGAAAGGATCTGATGAAATTGTTGTCAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTACCGAGCTAATAAAGGTGGGGGGTCGATATCTCTATCCAGTGAATTGGTTGGCATTTTTTTCTGTCTCACTATAGTGACTGCTCTTTCTACTTGTTTCAGAGAAGGATTGTTGGTCTGCATCAGAACACTCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCGTATGGCTTTTTGTTTCCTCTATGCTATCTTGTCAAATGATTTATGTGTGCATGGGTGTGATTGTTTTGGTTTTGTGTTTACTTGCTCAGTTTGGAGACTACTCGTCATGTTTCAATGATCACAATTACGTTGTCAAAGAAAGAGCTGGATACATCCTCCACAGGGTATGTACTTTCATGATATTGCATGACATCTGTATCTCAAAATTATGCTTGTTAATTAGATGCCTTATCCCTTGATAGGCTTAGTTATTTTTCAAGCAAGCTACTTGATCACTAATCAAGATCGACTTAGTAGTTTGTTTCATAAATTACAAACTTCATGACTACTTGTGCAAAGTTTATTTGTTTTTATAATCAGTACAGCTATAGTCTGCTCAGCATTATTTCCTAGCCGTTGTAATTCTGTAAGATTTGGGGTCACGGCAAAGTGCTAAATATATAGTTAAGAATGGCTTAATTATATTAAATAATTTTTATCTTGCTACAGGTATCTTGATTGAATAATTTTTACAAGCTTTATATAGCTTGTTGAATCAGAATTGAGAAAGGACCAAGGTTTTATTGAACCACAATTTCTGAGCTTTTAAAATCAGAGTTTTATTTTTTACTTTTTTTTATTTTTTCCTTATCTATCCCCCACCTCACCCGTCTCTTGTTTTGTGAACACCCCTTTGTCTTTTTAATATCGAACAAAGTGTTGTTTATGTATTTTAGAAACAAGGCGAGTGTGTATAAGTTCATAAAGATTTACTTGAATGTGTTATCTTTGGCATTTGACTATTAATTTGAACTTGATGTACATAACTACTCTGAGAACTAGTGAATATGTTAGACCTTTGACTTCAAACAGAGCGGTAAACACTATGTCATTCATGCCTCTGTACTTATTTTATCTTTTGGTGTTTATTATTTGCGCCTTTAGTTTCGCTTTTGATTGCTATTAATGCATTGGTTCAATTAAACATTAAACTCTGTTTTCTGTAATTATTAAGGCCCAGTCATGATTTACAAGTATGGTTGTCTTCTGCGCATTATGTTTAAATTTAGATATTTTATTTTGATTTTTAATTTTATTCTTTGTTGGCAAGCTCTAAGTTGTGTTTCCTGATTTCTCATGCAGATATCAACCTCCTCTTCCTGCTGATCAAGTAAAACCTTTGAATGAATATGAAGACGAAGGAGGTTAATTAGTAGTGTTTTTTCTTTTGATGTTTCAGAAGAGTGAAAATGTGTTGTTATGCATGTATAGTTGTTAACTATAATTTTGAAACAGAAGGCTCACCAAGGATGCGAGGAAGGGAAGGGGTCGTGGAAGGGGCAGGGGTAGAGGTAGAGGTATTGCTTCATACTTTGTTTTGCTTACTTAACTGTAATCGGATGAAGTAAAAATTATAGCGATCAGAAATGCTTTCTTGAACTCTTTATCGTTACTTTTAAAATAAAAAAATTATCTCATTACTACACAATCTATTCTTTATAGGAATGTACAATGGGGGTATGGAATATGGTGATGGTTGGGATGGTGGACGTGGCTATGGTGGCAGAGGGCGCGTCCGTGCATGGGGTCATGCTTTTCGTGGACGGGGACGGGGCTATGGTGCCCAGCCAGTTGGGCAGTATGACTATGGTGAATATGATGCACCACCTGCACCTCGTG

Protein sequence

>MS.gene049341.t1

MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGSDEIVVKAMGRAINKTVMITELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSTGYQPPLPADQVKPLNEYEDEGGMYNGGMEYGDGWDGGRGYGGRGRVRAWGHAFRGRGRGYGAQPVGQYDYGEYDAPPAPR