AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46218

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46218.t1 MTR_5g082940 95.882 170 6 1 1 169 1 170 4.65e-107 303
MS.gene46218.t1 MTR_3g071300 52.809 178 66 4 1 167 1 171 8.93e-60 183
MS.gene46218.t1 MTR_3g094000 48.193 83 40 1 72 154 89 168 6.40e-25 95.1
MS.gene46218.t1 MTR_4g120270 45.833 96 46 2 50 145 58 147 5.90e-21 87.0
MS.gene46218.t1 MTR_2g436100 34.722 144 79 4 29 159 35 176 1.61e-20 85.9
MS.gene46218.t1 MTR_8g073120 34.074 135 83 2 17 149 15 145 2.29e-20 84.0
MS.gene46218.t1 MTR_3g464780 42.424 99 48 3 53 149 88 179 4.14e-20 84.3
MS.gene46218.t1 MTR_5g024730 30.612 147 96 2 5 149 10 152 6.16e-20 83.2
MS.gene46218.t1 MTR_7g073200 31.250 128 83 3 27 152 33 157 4.98e-19 79.7
MS.gene46218.t1 MTR_7g113800 33.766 154 75 5 3 147 30 165 1.08e-18 82.0
MS.gene46218.t1 MTR_5g064990 31.159 138 88 2 17 147 51 188 1.81e-18 81.6
MS.gene46218.t1 MTR_8g023400 29.710 138 78 4 29 150 31 165 6.52e-18 79.3
MS.gene46218.t1 MTR_1g082550 34.711 121 67 3 38 147 53 172 6.66e-18 79.7
MS.gene46218.t1 MTR_8g092985 44.872 78 42 1 70 147 107 183 8.19e-18 77.4
MS.gene46218.t1 MTR_8g092960 46.053 76 40 1 72 147 101 175 1.55e-17 76.6
MS.gene46218.t1 MTR_8g092840 46.053 76 40 1 72 147 111 185 1.63e-17 77.0
MS.gene46218.t1 MTR_7g117540 33.333 141 84 4 14 147 9 146 1.84e-17 77.8
MS.gene46218.t1 MTR_8g093010 43.210 81 45 1 67 147 100 179 2.05e-17 76.6
MS.gene46218.t1 MTR_1g043410 35.577 104 64 2 50 152 72 173 2.15e-17 77.8
MS.gene46218.t1 MTR_8g092930 37.736 106 52 2 73 165 111 215 2.41e-17 76.3
MS.gene46218.t1 MTR_4g129420 39.286 84 50 1 68 151 111 193 2.44e-17 78.6
MS.gene46218.t1 MTR_3g099650 33.094 139 78 6 29 158 63 195 2.89e-17 78.2
MS.gene46218.t1 MTR_5g022920 41.026 78 46 0 70 147 157 234 3.89e-17 75.9
MS.gene46218.t1 MTR_5g030010 40.909 88 45 2 60 147 113 193 4.91e-17 77.4
MS.gene46218.t1 MTR_1g074190 36.111 108 56 4 73 167 98 205 4.96e-17 77.0
MS.gene46218.t1 MTR_2g055790 27.737 137 91 2 11 147 17 145 9.91e-17 74.3
MS.gene46218.t1 MTR_7g108855 37.615 109 58 3 43 148 39 140 1.16e-16 73.9
MS.gene46218.t1 MTR_6g087150 46.341 82 40 2 70 150 89 167 1.43e-16 76.3
MS.gene46218.t1 MTR_4g063070 42.169 83 47 1 62 144 297 378 1.49e-16 76.3
MS.gene46218.t1 MTR_8g066780 43.243 74 42 0 74 147 114 187 1.75e-16 75.9
MS.gene46218.t1 MTR_2g096350 40.260 77 46 0 71 147 104 180 3.21e-16 73.2
MS.gene46218.t1 MTR_3g114500 33.333 117 73 1 31 147 5 116 5.25e-16 70.5
MS.gene46218.t1 MTR_4g056590 38.272 81 45 1 69 149 95 170 5.61e-16 72.0
MS.gene46218.t1 MTR_2g090905 37.234 94 55 1 63 152 28 121 5.96e-16 70.5
MS.gene46218.t1 MTR_3g095560 42.308 78 44 1 70 147 105 181 9.47e-16 72.4
MS.gene46218.t1 MTR_3g100400 44.595 74 39 1 71 144 127 198 1.12e-15 73.6
MS.gene46218.t1 MTR_3g078450 40.260 77 46 0 74 150 76 152 1.25e-15 71.6
MS.gene46218.t1 MTR_7g116220 38.961 77 46 1 72 147 68 144 1.41e-15 70.9
MS.gene46218.t1 MTR_1g100737 39.241 79 45 2 73 148 91 169 2.08e-15 70.9
MS.gene46218.t1 MTR_5g064890 36.471 85 52 1 74 158 128 210 2.48e-15 72.4
MS.gene46218.t1 MTR_5g092790 43.056 72 41 0 73 144 156 227 2.78e-15 71.2
MS.gene46218.t1 MTR_4g108830 38.710 93 54 1 55 147 130 219 2.84e-15 70.9
MS.gene46218.t1 MTR_4g108830 44.156 77 40 1 71 147 118 191 3.50e-15 70.1
MS.gene46218.t1 MTR_8g092990 57.143 49 21 0 99 147 138 186 3.96e-15 70.5
MS.gene46218.t1 MTR_8g009190 32.298 161 97 4 9 157 1 161 4.02e-15 71.6
MS.gene46218.t1 MTR_8g092970 57.143 49 21 0 99 147 128 176 4.17e-15 70.5
MS.gene46218.t1 MTR_1g492830 27.891 147 92 4 26 163 5 146 4.54e-15 70.5
MS.gene46218.t1 MTR_2g090950 36.957 92 54 1 61 148 78 169 4.56e-15 70.5
MS.gene46218.t1 MTR_1g026070 32.031 128 73 4 30 155 9 124 5.28e-15 68.2
MS.gene46218.t1 MTR_8g074900 46.479 71 32 2 74 144 158 222 6.21e-15 70.1
MS.gene46218.t1 MTR_2g035800 29.851 134 91 2 16 148 17 148 6.58e-15 68.6
MS.gene46218.t1 MTR_3g091620 40.541 74 42 1 74 147 101 172 9.56e-15 70.9
MS.gene46218.t1 MTR_8g063660 28.777 139 79 3 27 147 3 139 1.21e-14 70.5
MS.gene46218.t1 MTR_3g116000 35.294 102 62 2 48 149 54 151 1.34e-14 68.6
MS.gene46218.t1 MTR_7g079280 28.889 135 76 3 29 146 21 152 1.41e-14 68.2
MS.gene46218.t1 MTR_4g030070 37.500 96 51 3 52 147 69 155 1.70e-14 68.9
MS.gene46218.t1 MTR_5g092750 43.056 72 41 0 73 144 156 227 1.72e-14 68.9
MS.gene46218.t1 MTR_5g071930 34.821 112 54 4 47 145 27 132 1.92e-14 68.2
MS.gene46218.t1 MTR_8g089880 32.258 93 61 1 68 160 121 211 2.03e-14 69.3
MS.gene46218.t1 MTR_7g116180 38.667 75 45 1 74 147 67 141 2.03e-14 67.8
MS.gene46218.t1 MTR_3g078540 28.462 130 87 3 30 157 9 134 2.10e-14 67.0
MS.gene46218.t1 MTR_7g076250 47.170 53 28 0 96 148 84 136 2.40e-14 67.8
MS.gene46218.t1 MTR_5g064980 28.859 149 86 5 33 162 54 201 2.46e-14 69.7
MS.gene46218.t1 MTR_5g066250 33.654 104 65 2 48 150 108 208 2.51e-14 70.1
MS.gene46218.t1 MTR_7g096690 32.979 94 59 2 72 162 68 160 2.64e-14 69.3
MS.gene46218.t1 MTR_6g055030 28.099 121 80 2 34 150 57 174 2.69e-14 69.3
MS.gene46218.t1 MTR_1g070425 38.667 75 45 1 74 147 68 142 3.21e-14 67.4
MS.gene46218.t1 MTR_3g078470 37.662 77 48 0 74 150 76 152 4.62e-14 67.4
MS.gene46218.t1 MTR_4g022410 55.319 47 21 0 101 147 112 158 4.85e-14 67.0
MS.gene46218.t1 MTR_3g086700 26.400 125 87 3 29 151 3 124 4.90e-14 67.0
MS.gene46218.t1 MTR_4g106680 31.159 138 72 4 29 147 44 177 5.23e-14 68.6
MS.gene46218.t1 MTR_6g007737 28.777 139 80 4 29 150 71 207 6.28e-14 68.6
MS.gene46218.t1 MTR_1g056350 41.892 74 42 1 74 146 74 147 6.78e-14 66.2
MS.gene46218.t1 MTR_3g086730 27.273 132 89 4 29 158 3 129 7.33e-14 67.4
MS.gene46218.t1 MTR_8g019710 33.000 100 60 2 51 147 4 99 8.08e-14 65.1
MS.gene46218.t1 MTR_7g076010 41.558 77 42 2 70 144 278 353 8.39e-14 68.2
MS.gene46218.t1 MTR_3g110190 43.421 76 39 2 70 144 62 134 9.24e-14 68.2
MS.gene46218.t1 MTR_6g007680 30.702 114 70 3 34 145 3 109 1.07e-13 65.5
MS.gene46218.t1 MTR_5g034790 40.541 74 42 1 74 147 116 187 1.22e-13 67.8
MS.gene46218.t1 MTR_1g090480 25.352 142 99 2 12 146 5 146 1.37e-13 65.5
MS.gene46218.t1 MTR_4g093830 31.111 90 59 2 68 156 120 207 1.48e-13 67.4
MS.gene46218.t1 MTR_5g026730 27.820 133 84 2 26 146 6 138 2.09e-13 65.1
MS.gene46218.t1 MTR_1g070140 28.743 167 88 7 4 147 17 175 2.13e-13 67.0
MS.gene46218.t1 MTR_7g116200 31.959 97 63 1 73 169 67 160 2.36e-13 64.7
MS.gene46218.t1 MTR_8g099515 38.356 73 45 0 74 146 309 381 3.65e-13 66.6
MS.gene46218.t1 MTR_2g009310 38.889 72 42 1 74 145 135 204 4.45e-13 66.2
MS.gene46218.t1 MTR_5g010720 55.102 49 21 1 96 144 326 373 4.79e-13 66.2
MS.gene46218.t1 MTR_3g078520 34.579 107 58 3 53 150 48 151 5.57e-13 63.5
MS.gene46218.t1 MTR_2g079320 34.940 83 50 1 69 147 122 204 5.64e-13 64.3
MS.gene46218.t1 MTR_5g026260 39.241 79 45 3 77 154 481 557 6.52e-13 65.9
MS.gene46218.t1 MTR_3g091200 27.152 151 101 2 5 146 225 375 8.02e-13 65.5
MS.gene46218.t1 MTR_8g028465 38.356 73 41 1 74 146 90 158 8.75e-13 63.9
MS.gene46218.t1 MTR_7g116210 36.709 79 49 1 91 169 25 102 1.02e-12 61.6
MS.gene46218.t1 MTR_4g094725 40.260 77 42 1 72 144 72 148 1.46e-12 62.4
MS.gene46218.t1 MTR_4g102870 51.923 52 24 1 96 147 310 360 1.73e-12 64.7
MS.gene46218.t1 MTR_3g078120 26.613 124 81 4 29 144 6 127 1.93e-12 62.0
MS.gene46218.t1 MTR_8g099495 31.818 88 60 0 74 161 319 406 1.95e-12 64.3
MS.gene46218.t1 MTR_2g041200 32.479 117 68 4 33 145 43 152 2.95e-12 62.0
MS.gene46218.t1 MTR_5g009210 38.028 71 44 0 74 144 287 357 3.81e-12 63.5
MS.gene46218.t1 MTR_4g116460 30.631 111 66 5 39 147 428 529 4.05e-12 63.5
MS.gene46218.t1 MTR_7g059360 51.064 47 23 0 101 147 157 203 4.12e-12 62.4
MS.gene46218.t1 MTR_5g096410 54.902 51 22 1 98 148 278 327 4.52e-12 63.2
MS.gene46218.t1 MTR_5g096410 54.902 51 22 1 98 148 287 336 4.95e-12 63.2
MS.gene46218.t1 MTR_5g096410 54.902 51 22 1 98 148 290 339 5.05e-12 63.2
MS.gene46218.t1 MTR_3g012550 26.667 135 83 4 26 146 20 152 6.01e-12 61.2
MS.gene46218.t1 MTR_8g071815 50.000 44 22 0 102 145 90 133 6.45e-12 61.2
MS.gene46218.t1 MTR_7g088560 42.857 63 33 2 88 148 121 182 8.19e-12 60.8
MS.gene46218.t1 MTR_7g088570 44.444 63 33 2 88 150 230 290 8.21e-12 62.4
MS.gene46218.t1 MTR_8g066740 32.800 125 78 4 29 149 31 153 8.88e-12 62.4
MS.gene46218.t1 MTR_6g055030 37.879 66 39 1 85 150 80 143 9.03e-12 62.0
MS.gene46218.t1 MTR_5g076990 32.800 125 71 3 36 147 27 151 9.84e-12 62.0
MS.gene46218.t1 MTR_5g026720 44.898 49 27 0 98 146 89 137 1.03e-11 60.1
MS.gene46218.t1 MTR_3g081030 29.032 186 96 7 5 163 2 178 1.10e-11 61.2
MS.gene46218.t1 MTR_7g079290 39.744 78 43 2 73 147 124 200 1.10e-11 60.8
MS.gene46218.t1 MTR_6g007670 48.077 52 27 0 94 145 25 76 1.68e-11 60.8
MS.gene46218.t1 MTR_2g044570 48.936 47 24 0 101 147 82 128 2.18e-11 61.2
MS.gene46218.t1 MTR_8g032690 45.652 46 25 0 102 147 19 64 3.85e-11 57.4
MS.gene46218.t1 MTR_5g009200 28.369 141 91 4 13 144 253 392 4.01e-11 60.5
MS.gene46218.t1 MTR_1g047180 38.961 77 41 3 71 147 657 727 4.39e-11 60.8
MS.gene46218.t1 MTR_4g116460 30.631 111 66 5 39 147 385 486 5.79e-11 60.5
MS.gene46218.t1 MTR_5g009190 37.500 72 43 2 74 144 266 336 8.25e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46218.t1 AT3G11110 39.259 135 79 2 18 150 22 155 9.39e-26 96.7
MS.gene46218.t1 AT3G10910 40.594 101 57 2 54 154 69 166 3.44e-22 88.2
MS.gene46218.t1 AT2G17450 36.496 137 73 4 15 144 15 144 4.98e-22 87.8
MS.gene46218.t1 AT5G01880 44.828 87 46 1 61 147 66 150 5.37e-20 82.0
MS.gene46218.t1 AT3G16720 35.714 140 69 3 24 145 26 162 9.50e-20 84.3
MS.gene46218.t1 AT3G05200 28.977 176 96 5 14 163 32 204 2.33e-19 84.0
MS.gene46218.t1 AT3G62690 35.075 134 67 4 33 148 28 159 1.31e-18 80.5
MS.gene46218.t1 AT4G15975 36.923 130 75 2 44 169 17 143 1.43e-18 80.1
MS.gene46218.t1 AT5G05280 44.444 81 42 1 67 147 81 158 1.73e-18 78.6
MS.gene46218.t1 AT2G27940 32.867 143 81 4 30 162 61 198 2.71e-18 79.3
MS.gene46218.t1 AT3G14320 38.824 85 49 1 63 147 52 133 3.08e-18 78.6
MS.gene46218.t1 AT3G48030 33.333 132 73 3 30 147 122 252 3.96e-18 80.5
MS.gene46218.t1 AT2G47560 33.333 135 79 3 25 148 20 154 4.43e-18 78.6
MS.gene46218.t1 AT3G48030 33.083 133 74 3 30 148 44 175 5.06e-18 79.0
MS.gene46218.t1 AT1G49220 40.230 87 51 1 61 147 95 180 6.54e-18 78.6
MS.gene46218.t1 AT5G27420 31.298 131 84 2 30 159 56 181 8.02e-18 79.7
MS.gene46218.t1 AT1G72200 32.168 143 83 5 29 162 73 210 8.58e-18 79.7
MS.gene46218.t1 AT2G18670 41.667 84 48 1 72 155 81 163 9.10e-18 76.6
MS.gene46218.t1 AT1G35330 34.921 126 71 4 32 147 50 174 1.17e-17 79.0
MS.gene46218.t1 AT1G74410 41.026 78 44 1 71 148 147 222 1.35e-17 77.0
MS.gene46218.t1 AT4G09100 42.105 76 43 1 73 147 55 130 1.47e-17 74.7
MS.gene46218.t1 AT5G43420 27.160 162 86 3 32 161 36 197 1.81e-17 78.6
MS.gene46218.t1 AT2G17730 43.373 83 45 2 64 144 156 238 1.84e-17 77.0
MS.gene46218.t1 AT1G04360 27.815 151 88 2 32 161 43 193 2.46e-17 78.2
MS.gene46218.t1 AT4G40070 32.432 148 80 6 12 147 30 169 3.50e-17 77.4
MS.gene46218.t1 AT1G76410 35.246 122 76 3 29 149 32 151 4.06e-17 75.1
MS.gene46218.t1 AT4G10150 29.487 156 97 4 2 147 4 156 6.63e-17 75.5
MS.gene46218.t1 AT4G35480 27.517 149 95 1 9 144 7 155 7.75e-17 74.7
MS.gene46218.t1 AT5G17600 31.008 129 74 4 30 145 59 185 1.37e-16 76.3
MS.gene46218.t1 AT1G53820 31.373 153 77 5 20 147 16 165 1.42e-16 75.5
MS.gene46218.t1 AT2G35000 41.463 82 47 1 72 152 104 185 1.99e-16 75.9
MS.gene46218.t1 AT4G17905 40.000 80 48 0 70 149 149 228 2.14e-16 75.5
MS.gene46218.t1 AT4G10160 30.405 148 83 5 23 158 18 157 2.49e-16 73.9
MS.gene46218.t1 AT4G17905 40.000 80 48 0 70 149 123 202 2.76e-16 74.7
MS.gene46218.t1 AT5G10380 38.202 89 45 2 74 162 109 187 4.31e-16 74.3
MS.gene46218.t1 AT3G18773 42.667 75 42 1 70 144 99 172 1.01e-15 72.0
MS.gene46218.t1 AT1G23980 28.571 147 78 4 26 147 45 189 3.04e-15 72.4
MS.gene46218.t1 AT4G09110 32.500 120 77 3 33 149 52 170 3.53e-15 71.6
MS.gene46218.t1 AT1G49200 40.000 75 44 1 70 144 105 178 3.66e-15 70.9
MS.gene46218.t1 AT1G72310 40.541 74 41 1 74 147 102 172 3.94e-15 71.6
MS.gene46218.t1 AT2G34990 30.709 127 79 3 29 147 16 141 4.36e-15 71.6
MS.gene46218.t1 AT2G34990 30.709 127 79 3 29 147 38 163 5.01e-15 71.6
MS.gene46218.t1 AT3G18930 41.463 82 40 2 74 147 120 201 6.54e-15 71.6
MS.gene46218.t1 AT3G18930 41.463 82 40 2 74 147 120 201 6.54e-15 71.6
MS.gene46218.t1 AT3G18930 41.463 82 40 2 74 147 120 201 6.54e-15 71.6
MS.gene46218.t1 AT4G35840 39.241 79 47 1 70 147 158 236 9.32e-15 69.7
MS.gene46218.t1 AT1G20823 28.767 146 95 3 12 149 14 158 1.09e-14 68.9
MS.gene46218.t1 AT2G20030 41.463 82 44 2 70 150 94 172 1.25e-14 70.9
MS.gene46218.t1 AT5G66070 38.824 85 47 2 64 147 141 221 1.49e-14 68.9
MS.gene46218.t1 AT5G66070 38.824 85 47 2 64 147 141 221 1.49e-14 68.9
MS.gene46218.t1 AT3G03550 42.254 71 39 1 75 145 134 202 1.50e-14 70.5
MS.gene46218.t1 AT5G66070 38.824 85 47 2 64 147 165 245 1.68e-14 69.3
MS.gene46218.t1 AT2G35420 35.115 131 77 4 21 147 22 148 1.94e-14 69.3
MS.gene46218.t1 AT1G22500 42.667 75 42 1 74 147 89 163 1.99e-14 70.1
MS.gene46218.t1 AT4G30370 39.726 73 42 1 72 144 87 157 2.12e-14 67.8
MS.gene46218.t1 AT2G42360 32.867 143 85 5 12 148 17 154 2.25e-14 68.6
MS.gene46218.t1 AT2G46494 29.333 150 94 3 9 146 211 360 3.33e-14 69.3
MS.gene46218.t1 AT1G72220 27.545 167 84 6 30 169 80 236 4.38e-14 69.3
MS.gene46218.t1 AT1G49210 38.356 73 44 1 72 144 106 177 5.27e-14 67.4
MS.gene46218.t1 AT5G05810 43.243 74 40 2 71 144 117 188 5.80e-14 68.9
MS.gene46218.t1 AT4G28890 36.559 93 54 3 74 165 97 185 5.96e-14 68.9
MS.gene46218.t1 AT1G49230 45.070 71 38 1 74 144 104 173 7.31e-14 67.0
MS.gene46218.t1 AT2G18650 40.541 74 43 1 74 147 99 171 8.67e-14 68.6
MS.gene46218.t1 AT1G80400 35.714 98 40 2 69 144 300 396 1.62e-13 67.8
MS.gene46218.t1 AT4G33565 40.278 72 41 1 74 145 191 260 2.52e-13 67.0
MS.gene46218.t1 AT3G19140 32.174 115 72 3 36 148 15 125 2.70e-13 63.9
MS.gene46218.t1 AT5G40250 30.345 145 74 5 29 147 45 188 2.79e-13 67.0
MS.gene46218.t1 AT2G25410 32.168 143 89 3 12 146 229 371 2.86e-13 67.0
MS.gene46218.t1 AT5G06490 35.227 88 52 2 64 146 86 173 2.95e-13 65.1
MS.gene46218.t1 AT4G09120 38.462 78 47 1 73 149 93 170 5.08e-13 65.9
MS.gene46218.t1 AT1G12760 55.319 47 20 1 98 144 349 394 6.25e-13 65.9
MS.gene46218.t1 AT1G12760 52.000 50 23 1 98 147 278 326 7.66e-13 65.5
MS.gene46218.t1 AT4G09130 38.636 88 45 3 73 154 90 174 7.96e-13 65.5
MS.gene46218.t1 AT5G47610 42.254 71 40 1 77 147 83 152 9.45e-13 63.2
MS.gene46218.t1 AT2G42350 38.889 72 41 1 73 144 74 142 1.34e-12 63.5
MS.gene46218.t1 AT4G30400 39.726 73 39 2 74 144 107 176 1.58e-12 64.7
MS.gene46218.t1 AT2G46493 40.541 74 44 0 73 146 109 182 1.82e-12 62.8
MS.gene46218.t1 AT2G17730 37.113 97 54 3 64 153 156 252 2.18e-12 63.5
MS.gene46218.t1 AT1G53010 37.349 83 47 2 70 147 93 175 2.20e-12 62.4
MS.gene46218.t1 AT5G57750 29.231 130 77 4 29 144 36 164 2.52e-12 62.8
MS.gene46218.t1 AT3G61550 33.333 105 58 2 74 169 99 200 2.70e-12 62.8
MS.gene46218.t1 AT5G07040 28.244 131 86 2 24 146 8 138 2.81e-12 61.6
MS.gene46218.t1 AT4G17245 32.500 120 67 4 29 147 42 148 3.00e-12 61.6
MS.gene46218.t1 AT2G46160 37.975 79 43 1 74 146 104 182 3.07e-12 62.8
MS.gene46218.t1 AT2G46160 37.975 79 43 1 74 146 104 182 3.07e-12 62.8
MS.gene46218.t1 AT4G26580 39.024 82 45 2 70 147 253 333 3.16e-12 63.5
MS.gene46218.t1 AT4G26580 39.024 82 45 2 70 147 253 333 3.16e-12 63.5
MS.gene46218.t1 AT1G33480 33.784 74 46 1 74 147 75 145 4.03e-12 62.8
MS.gene46218.t1 AT2G34000 28.947 114 78 2 34 144 20 133 4.76e-12 60.8
MS.gene46218.t1 AT5G58580 38.824 85 49 2 61 145 100 181 5.34e-12 62.8
MS.gene46218.t1 AT2G44578 40.909 66 35 1 86 147 50 115 5.92e-12 60.5
MS.gene46218.t1 AT3G20395 33.735 83 51 2 62 144 135 213 7.52e-12 61.6
MS.gene46218.t1 AT5G53110 35.616 73 47 0 74 146 302 374 8.03e-12 62.8
MS.gene46218.t1 AT5G42200 33.750 80 51 1 72 151 76 153 8.49e-12 60.5
MS.gene46218.t1 AT1G63170 50.909 55 24 2 95 147 316 369 8.50e-12 62.8
MS.gene46218.t1 AT2G46495 32.847 137 84 3 13 146 233 364 9.48e-12 62.4
MS.gene46218.t1 AT1G28040 38.667 75 46 0 72 146 223 297 1.42e-11 61.6
MS.gene46218.t1 AT1G32361 31.868 91 50 3 74 156 130 216 1.52e-11 61.6
MS.gene46218.t1 AT2G46495 43.243 74 41 1 74 146 263 336 1.97e-11 61.6
MS.gene46218.t1 AT4G11680 53.191 47 21 1 98 144 334 379 1.97e-11 61.6
MS.gene46218.t1 AT4G32600 36.250 80 48 2 70 147 329 407 2.11e-11 61.6
MS.gene46218.t1 AT4G32600 36.250 80 48 2 70 147 329 407 2.11e-11 61.6
MS.gene46218.t1 AT1G04790 40.541 74 38 3 74 147 566 633 2.83e-11 61.2
MS.gene46218.t1 AT2G35910 35.616 73 45 1 74 146 121 191 3.25e-11 59.7
MS.gene46218.t1 AT3G60220 37.500 72 44 1 77 147 91 162 3.35e-11 60.8
MS.gene46218.t1 AT1G68070 37.662 77 40 3 71 144 262 333 3.54e-11 60.8
MS.gene46218.t1 AT5G36001 48.387 62 32 0 85 146 247 308 4.54e-11 60.5
MS.gene46218.t1 AT5G20910 40.845 71 41 1 80 150 208 277 5.93e-11 60.1
MS.gene46218.t1 AT5G55970 52.000 50 23 1 98 147 293 341 7.98e-11 59.7
MS.gene46218.t1 AT5G55970 52.000 50 23 1 98 147 293 341 7.98e-11 59.7
MS.gene46218.t1 AT2G44581 40.678 59 35 0 89 147 57 115 9.11e-11 57.4

Find 49 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGGTTCGTCTTCGGGTTC+GGG 0.262925 5.3:+67092299 None:intergenic
CAATGCATGGTTTGAAGTAT+TGG 0.271086 5.3:+67092073 None:intergenic
GAGTGGTTCGTCTTCGGGTT+CGG 0.280107 5.3:+67092298 None:intergenic
ACTTGGAGTGGTTCGTCTTC+GGG 0.286558 5.3:+67092293 None:intergenic
GGTTCTTGAATCAAAATCTT+AGG 0.287792 5.3:+67091882 None:intergenic
CGTGGGGAGTGTGGTGGGTT+TGG 0.305441 5.3:+67092183 None:intergenic
GACTTGGAGTGGTTCGTCTT+CGG 0.310812 5.3:+67092292 None:intergenic
CACTCTTCCTCTGTGCCCGC+TGG 0.403523 5.3:-67092211 MS.gene46218:CDS
AGAGGAAGATTATATCTAAT+AGG 0.408896 5.3:+67091858 None:intergenic
TTGGATTGGTGTAGTATGAT+AGG 0.417548 5.3:+67092092 None:intergenic
GGCGTTGGCGTCGAGTCCTT+CGG 0.420894 5.3:+67092127 None:intergenic
TATGATAGGAAGCTTCTTGA+TGG 0.447186 5.3:+67092106 None:intergenic
TGGCGCGTGGGGAGTGTGGT+GGG 0.454246 5.3:+67092178 None:intergenic
GGAGTTTGTGGCCTTTGACT+TGG 0.470416 5.3:+67092276 None:intergenic
ATGGCGCGTGGGGAGTGTGG+TGG 0.484730 5.3:+67092177 None:intergenic
AAACCATGCATTGGAGGAAA+CGG 0.503937 5.3:-67092063 MS.gene46218:CDS
AGGAAGCTTCTTGATGGCGT+TGG 0.511777 5.3:+67092112 None:intergenic
TACTTCAAACCATGCATTGG+AGG 0.519213 5.3:-67092069 MS.gene46218:CDS
CAATACTTCAAACCATGCAT+TGG 0.523711 5.3:-67092072 MS.gene46218:CDS
CAATGAAGAAGAGGAGTTTG+TGG 0.523900 5.3:+67092264 None:intergenic
ATTGTGAATGTGTTGATGCA+TGG 0.528588 5.3:-67091965 MS.gene46218:CDS
CATGGTTTGAAGTATTGGAT+TGG 0.530983 5.3:+67092078 None:intergenic
ACCACTAAACAAGATTAAAG+AGG 0.532614 5.3:+67091840 None:intergenic
GAGGATGATGATGGTGAAGA+TGG 0.534987 5.3:+67092241 None:intergenic
TGTTTAAGCACGTTTAGAGA+TGG 0.546859 5.3:-67092029 MS.gene46218:CDS
GAGATGGCGCGTGGGGAGTG+TGG 0.554524 5.3:+67092174 None:intergenic
ATTCCGTTTCCTCCAATGCA+TGG 0.554845 5.3:+67092060 None:intergenic
TTGTGGCCTTTGACTTGGAG+TGG 0.557650 5.3:+67092281 None:intergenic
TGAAGATGGCAATGAAGAAG+AGG 0.560013 5.3:+67092255 None:intergenic
GTGGTTCGTCTTCGGGTTCG+GGG 0.568042 5.3:+67092300 None:intergenic
TGGAGGTGTGAGATGGCGCG+TGG 0.572879 5.3:+67092165 None:intergenic
GTGGGTTTGGAAGAGCCAGC+GGG 0.574654 5.3:+67092196 None:intergenic
CTAACATCAAAACATTCGAC+TGG 0.578650 5.3:-67092331 MS.gene46218:CDS
GGAGGTGTGAGATGGCGCGT+GGG 0.578793 5.3:+67092166 None:intergenic
AGAGGAAGAGTGCTGTGAAG+AGG 0.584195 5.3:+67092222 None:intergenic
GACGAACCACTCCAAGTCAA+AGG 0.593233 5.3:-67092287 MS.gene46218:CDS
GAGGTGTGAGATGGCGCGTG+GGG 0.607748 5.3:+67092167 None:intergenic
CACGTTTAGAGATGGTGAGA+AGG 0.608612 5.3:-67092021 MS.gene46218:CDS
TGCTGTGAAGAGGATGATGA+TGG 0.611187 5.3:+67092232 None:intergenic
ACATTCTTCTCTCAATCCGA+AGG 0.611520 5.3:-67092143 MS.gene46218:CDS
GGTGGGTTTGGAAGAGCCAG+CGG 0.612564 5.3:+67092195 None:intergenic
GGAAGAGCCAGCGGGCACAG+AGG 0.623780 5.3:+67092204 None:intergenic
TTTGATGTTAGGGTTTGACA+TGG 0.641304 5.3:+67092343 None:intergenic
GGAAGATTATATCTAATAGG+TGG 0.648060 5.3:+67091861 None:intergenic
AAGAATGTGGAGGTGTGAGA+TGG 0.658890 5.3:+67092158 None:intergenic
TTCGGATTGAGAGAAGAATG+TGG 0.662383 5.3:+67092145 None:intergenic
TGAAAATAATGATCACAACT+CGG 0.680055 5.3:+67091987 None:intergenic
TTAAGAGAAGCTCTACACAA+AGG 0.692515 5.3:+67091921 None:intergenic
GGATTGAGAGAAGAATGTGG+AGG 0.769620 5.3:+67092148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGAGGAAGATTATATCTAAT+AGG + chr5.3:67092340-67092359 None:intergenic 25.0%
! TGAAAATAATGATCACAACT+CGG + chr5.3:67092211-67092230 None:intergenic 25.0%
GGAAGATTATATCTAATAGG+TGG + chr5.3:67092337-67092356 None:intergenic 30.0%
GGTTCTTGAATCAAAATCTT+AGG + chr5.3:67092316-67092335 None:intergenic 30.0%
!!! AGTCGAATGTTTTGATGTTA+GGG + chr5.3:67091865-67091884 None:intergenic 30.0%
CAATACTTCAAACCATGCAT+TGG - chr5.3:67092123-67092142 MS.gene46218:CDS 35.0%
CTAACATCAAAACATTCGAC+TGG - chr5.3:67091864-67091883 MS.gene46218:CDS 35.0%
TATGATAGGAAGCTTCTTGA+TGG + chr5.3:67092092-67092111 None:intergenic 35.0%
TGTTTAAGCACGTTTAGAGA+TGG - chr5.3:67092166-67092185 MS.gene46218:CDS 35.0%
TTAAGAGAAGCTCTACACAA+AGG + chr5.3:67092277-67092296 None:intergenic 35.0%
! ATTGTGAATGTGTTGATGCA+TGG - chr5.3:67092230-67092249 MS.gene46218:CDS 35.0%
! CAATGCATGGTTTGAAGTAT+TGG + chr5.3:67092125-67092144 None:intergenic 35.0%
!! CATGGTTTGAAGTATTGGAT+TGG + chr5.3:67092120-67092139 None:intergenic 35.0%
!! TTGGATTGGTGTAGTATGAT+AGG + chr5.3:67092106-67092125 None:intergenic 35.0%
!!! CAGTCGAATGTTTTGATGTT+AGG + chr5.3:67091866-67091885 None:intergenic 35.0%
AAACCATGCATTGGAGGAAA+CGG - chr5.3:67092132-67092151 MS.gene46218:CDS 40.0%
ACATTCTTCTCTCAATCCGA+AGG - chr5.3:67092052-67092071 MS.gene46218:CDS 40.0%
CAATGAAGAAGAGGAGTTTG+TGG + chr5.3:67091934-67091953 None:intergenic 40.0%
TACTTCAAACCATGCATTGG+AGG - chr5.3:67092126-67092145 MS.gene46218:CDS 40.0%
TGAAGATGGCAATGAAGAAG+AGG + chr5.3:67091943-67091962 None:intergenic 40.0%
TTCGGATTGAGAGAAGAATG+TGG + chr5.3:67092053-67092072 None:intergenic 40.0%
ATTCCGTTTCCTCCAATGCA+TGG + chr5.3:67092138-67092157 None:intergenic 45.0%
CACGTTTAGAGATGGTGAGA+AGG - chr5.3:67092174-67092193 MS.gene46218:CDS 45.0%
GGATTGAGAGAAGAATGTGG+AGG + chr5.3:67092050-67092069 None:intergenic 45.0%
TGCTGTGAAGAGGATGATGA+TGG + chr5.3:67091966-67091985 None:intergenic 45.0%
! AAGAATGTGGAGGTGTGAGA+TGG + chr5.3:67092040-67092059 None:intergenic 45.0%
!! GAGGATGATGATGGTGAAGA+TGG + chr5.3:67091957-67091976 None:intergenic 45.0%
ACTTGGAGTGGTTCGTCTTC+GGG + chr5.3:67091905-67091924 None:intergenic 50.0%
GACGAACCACTCCAAGTCAA+AGG - chr5.3:67091908-67091927 MS.gene46218:CDS 50.0%
GACTTGGAGTGGTTCGTCTT+CGG + chr5.3:67091906-67091925 None:intergenic 50.0%
GGAGTTTGTGGCCTTTGACT+TGG + chr5.3:67091922-67091941 None:intergenic 50.0%
!! AGAGGAAGAGTGCTGTGAAG+AGG + chr5.3:67091976-67091995 None:intergenic 50.0%
!! AGGAAGCTTCTTGATGGCGT+TGG + chr5.3:67092086-67092105 None:intergenic 50.0%
!! TTGTGGCCTTTGACTTGGAG+TGG + chr5.3:67091917-67091936 None:intergenic 50.0%
! AGTGGTTCGTCTTCGGGTTC+GGG + chr5.3:67091899-67091918 None:intergenic 55.0%
! GAGTGGTTCGTCTTCGGGTT+CGG + chr5.3:67091900-67091919 None:intergenic 55.0%
GTGGGTTTGGAAGAGCCAGC+GGG + chr5.3:67092002-67092021 None:intergenic 60.0%
! GGTGGGTTTGGAAGAGCCAG+CGG + chr5.3:67092003-67092022 None:intergenic 60.0%
! GTGGTTCGTCTTCGGGTTCG+GGG + chr5.3:67091898-67091917 None:intergenic 60.0%
CACTCTTCCTCTGTGCCCGC+TGG - chr5.3:67091984-67092003 MS.gene46218:CDS 65.0%
GAGGTGTGAGATGGCGCGTG+GGG + chr5.3:67092031-67092050 None:intergenic 65.0%
! GGAGGTGTGAGATGGCGCGT+GGG + chr5.3:67092032-67092051 None:intergenic 65.0%
! TGGAGGTGTGAGATGGCGCG+TGG + chr5.3:67092033-67092052 None:intergenic 65.0%
!! CGTGGGGAGTGTGGTGGGTT+TGG + chr5.3:67092015-67092034 None:intergenic 65.0%
!! GGCGTTGGCGTCGAGTCCTT+CGG + chr5.3:67092071-67092090 None:intergenic 65.0%
GAGATGGCGCGTGGGGAGTG+TGG + chr5.3:67092024-67092043 None:intergenic 70.0%
GGAAGAGCCAGCGGGCACAG+AGG + chr5.3:67091994-67092013 None:intergenic 70.0%
! ATGGCGCGTGGGGAGTGTGG+TGG + chr5.3:67092021-67092040 None:intergenic 70.0%
! TGGCGCGTGGGGAGTGTGGT+GGG + chr5.3:67092020-67092039 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 67091854 67092363 67091854 ID=MS.gene46218
chr5.3 mRNA 67091854 67092363 67091854 ID=MS.gene46218.t1;Parent=MS.gene46218
chr5.3 exon 67091854 67092363 67091854 ID=MS.gene46218.t1.exon1;Parent=MS.gene46218.t1
chr5.3 CDS 67091854 67092363 67091854 ID=cds.MS.gene46218.t1;Parent=MS.gene46218.t1
Gene Sequence

>MS.gene46218

ATGTCAAACCCTAACATCAAAACATTCGACTGGACGTTCAACCCCGAACCCGAAGACGAACCACTCCAAGTCAAAGGCCACAAACTCCTCTTCTTCATTGCCATCTTCACCATCATCATCCTCTTCACAGCACTCTTCCTCTGTGCCCGCTGGCTCTTCCAAACCCACCACACTCCCCACGCGCCATCTCACACCTCCACATTCTTCTCTCAATCCGAAGGACTCGACGCCAACGCCATCAAGAAGCTTCCTATCATACTACACCAATCCAATACTTCAAACCATGCATTGGAGGAAACGGAATGTTGCATTTGTTTAAGCACGTTTAGAGATGGTGAGAAGGTGAAAGTGTTACCGAGTTGTGATCATTATTTTCATTGTGAATGTGTTGATGCATGGCTTGTGAAACATTCTAGTTGTCCTTTGTGTAGAGCTTCTCTTAAGATTGATTTAGAGTTTCCTAAGATTTTGATTCAAGAACCACCTATTAGATATAATCTTCCTCTTTAA
Protein sequence

>MS.gene46218.t1

MSNPNIKTFDWTFNPEPEDEPLQVKGHKLLFFIAIFTIIILFTALFLCARWLFQTHHTPHAPSHTSTFFSQSEGLDANAIKKLPIILHQSNTSNHALEETECCICLSTFRDGEKVKVLPSCDHYFHCECVDAWLVKHSSCPLCRASLKIDLEFPKILIQEPPIRYNLPL