Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46391.t1 | XP_013457572.1 | 96.1 | 685 | 27 | 0 | 1 | 685 | 1 | 685 | 0.00E+00 | 1307.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46391.t1 | B3H672 | 48.6 | 634 | 313 | 4 | 51 | 681 | 46 | 669 | 9.6e-156 | 552.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46391.t1 | A0A072URA8 | 96.1 | 685 | 27 | 0 | 1 | 685 | 1 | 685 | 0.0e+00 | 1307.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059898 | MS.gene46391 | 0.803942 | 2.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46391.t1 | MTR_4g099200 | 96.058 | 685 | 27 | 0 | 1 | 685 | 1 | 685 | 0.0 | 1365 |
| MS.gene46391.t1 | MTR_4g099190 | 93.182 | 308 | 20 | 1 | 867 | 1173 | 20 | 327 | 0.0 | 555 |
| MS.gene46391.t1 | MTR_4g099190 | 92.880 | 309 | 20 | 2 | 867 | 1173 | 20 | 328 | 0.0 | 553 |
| MS.gene46391.t1 | MTR_4g099190 | 93.923 | 181 | 11 | 0 | 867 | 1047 | 20 | 200 | 3.38e-117 | 363 |
| MS.gene46391.t1 | MTR_4g081540 | 28.469 | 699 | 410 | 15 | 69 | 685 | 95 | 785 | 1.99e-73 | 261 |
| MS.gene46391.t1 | MTR_8g062650 | 51.892 | 185 | 35 | 3 | 436 | 620 | 60 | 190 | 1.10e-42 | 154 |
| MS.gene46391.t1 | MTR_5g044930 | 22.630 | 654 | 402 | 18 | 69 | 685 | 76 | 662 | 1.44e-37 | 151 |
| MS.gene46391.t1 | MTR_5g045620 | 22.630 | 654 | 402 | 18 | 69 | 685 | 72 | 658 | 3.04e-37 | 150 |
| MS.gene46391.t1 | MTR_3g065790 | 65.714 | 70 | 24 | 0 | 797 | 866 | 88 | 157 | 1.01e-22 | 97.1 |
| MS.gene46391.t1 | MTR_3g065890 | 45.370 | 108 | 43 | 2 | 753 | 860 | 112 | 203 | 3.16e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46391.t1 | AT4G17616 | 48.276 | 638 | 317 | 4 | 51 | 685 | 46 | 673 | 0.0 | 578 |
| MS.gene46391.t1 | AT5G47090 | 49.536 | 323 | 141 | 4 | 851 | 1173 | 10 | 310 | 2.35e-94 | 304 |
| MS.gene46391.t1 | AT5G47090 | 49.536 | 323 | 141 | 4 | 851 | 1173 | 10 | 310 | 2.35e-94 | 304 |
| MS.gene46391.t1 | AT1G03100 | 27.522 | 694 | 428 | 14 | 65 | 685 | 101 | 792 | 1.02e-67 | 244 |
| MS.gene46391.t1 | AT1G69290 | 24.431 | 659 | 386 | 23 | 69 | 685 | 68 | 656 | 2.22e-33 | 138 |
| MS.gene46391.t1 | AT1G68980 | 24.695 | 656 | 381 | 23 | 66 | 683 | 35 | 615 | 2.22e-31 | 132 |
Find 251 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATAGGAGGAGGGCTTATT+TGG | 0.186213 | 8.4:+23806715 | MS.gene46391:CDS |
| CATATTGTGAAGACAGAAAT+TGG | 0.187926 | 8.4:+23801980 | MS.gene46391:CDS |
| TGAGTATGTTGGGAAGTTTC+AGG | 0.226641 | 8.4:+23806808 | MS.gene46391:CDS |
| CCCAAACCTGGACTGAAATT+AGG | 0.238146 | 8.4:-23805174 | None:intergenic |
| TGCTGCCTCTAAGCTTGTTT+TGG | 0.249944 | 8.4:+23802372 | MS.gene46391:CDS |
| GGTGGATTGCCTGCTCTTCT+TGG | 0.249994 | 8.4:+23805105 | MS.gene46391:CDS |
| TAGGTGGATTGTGGGATTCT+TGG | 0.254467 | 8.4:+23803907 | MS.gene46391:CDS |
| TAATGGTTTGAAGGATAAAA+AGG | 0.254754 | 8.4:+23802048 | MS.gene46391:CDS |
| GACAAAACTTGCATTGTCTT+TGG | 0.263601 | 8.4:+23801859 | MS.gene46391:CDS |
| GCTTTGGCTAAGTTTATTAT+TGG | 0.264564 | 8.4:+23802607 | MS.gene46391:CDS |
| TGAGTCTGCTCATGATATTT+TGG | 0.266133 | 8.4:+23802759 | MS.gene46391:CDS |
| AAAATTGTTGAAGAGAATTC+AGG | 0.276366 | 8.4:+23801815 | MS.gene46391:CDS |
| ATTACCAATCCACTCGCTTC+TGG | 0.278878 | 8.4:-23806951 | None:intergenic |
| CAATCTCAATGCTGAGCTTC+TGG | 0.280039 | 8.4:+23803949 | MS.gene46391:CDS |
| ATGTTCAGGAATTTAGAAAA+TGG | 0.290016 | 8.4:+23803475 | MS.gene46391:CDS |
| GACTTCATAAGAATCTTTAT+AGG | 0.290227 | 8.4:+23803400 | MS.gene46391:CDS |
| GAAGGACACTGTGCTTAAAT+TGG | 0.315336 | 8.4:+23802528 | MS.gene46391:CDS |
| TTCAGTTGGGAAATCAGATT+TGG | 0.326462 | 8.4:+23802969 | MS.gene46391:CDS |
| GCTTACCCAGTAGAATTTCT+TGG | 0.328003 | 8.4:-23801625 | None:intergenic |
| ATGCAGCAGAAGTTTCTATT+AGG | 0.331657 | 8.4:+23810635 | MS.gene46391:CDS |
| ATAGCATCATCAGACAATTC+TGG | 0.334518 | 8.4:-23802913 | None:intergenic |
| GAGCTTCTGGTTGTGTTCAA+TGG | 0.349531 | 8.4:+23803962 | MS.gene46391:CDS |
| TCTCTCTTCTGCATCAATAT+TGG | 0.350041 | 8.4:-23810732 | None:intergenic |
| CTATACTCAGCGACAGGATC+TGG | 0.351314 | 8.4:+23802691 | MS.gene46391:CDS |
| CTCCAACTCTTCTGAAGTTA+AGG | 0.352124 | 8.4:-23810585 | None:intergenic |
| TAACCTCAGGGTAACCATAA+AGG | 0.353548 | 8.4:-23801712 | None:intergenic |
| CCTTTGCAAATCATTCTTCA+TGG | 0.353682 | 8.4:+23801512 | MS.gene46391:CDS |
| GGCTTATTTGGATAAGTTGA+TGG | 0.354956 | 8.4:+23806727 | MS.gene46391:CDS |
| GGAAGAAGAGGAAGAGGAGG+AGG | 0.356366 | 8.4:+23806991 | MS.gene46391:CDS |
| AGAAGAGGAAGAGGAGGAGG+AGG | 0.356540 | 8.4:+23806994 | MS.gene46391:CDS |
| TATCAAATCTAGAGAATCTA+TGG | 0.357891 | 8.4:+23806450 | MS.gene46391:CDS |
| TGACCTAAGTTGCGGTCATC+TGG | 0.358457 | 8.4:+23804518 | MS.gene46391:CDS |
| ATTGAGTTAATGCCGCTAAT+GGG | 0.359342 | 8.4:+23802169 | MS.gene46391:CDS |
| TGCTCTTAGTAATAGAGCTT+TGG | 0.360100 | 8.4:+23802591 | MS.gene46391:CDS |
| AAGATGATTACGAGGTTAAC+TGG | 0.361960 | 8.4:+23806621 | MS.gene46391:CDS |
| GATTGAGTTAATGCCGCTAA+TGG | 0.362142 | 8.4:+23802168 | MS.gene46391:CDS |
| AGGTGGATTGTGGGATTCTT+GGG | 0.363068 | 8.4:+23803908 | MS.gene46391:CDS |
| TTATTCTTCTAATAATGTTT+TGG | 0.365111 | 8.4:+23801766 | MS.gene46391:CDS |
| AGAGGAAGAGGAGGAGGAGG+AGG | 0.367681 | 8.4:+23806997 | MS.gene46391:CDS |
| GGAGGAGGATGGCTAGGCCG+GGG | 0.377867 | 8.4:+23806840 | MS.gene46391:CDS |
| GATTGGAACCGTAGCGTTCT+AGG | 0.381445 | 8.4:-23806562 | None:intergenic |
| GGGAAGTTTCAGGATAGGTT+TGG | 0.382606 | 8.4:+23806818 | MS.gene46391:CDS |
| TGGGAGGAGGATGGCTAGGC+CGG | 0.384998 | 8.4:+23806838 | MS.gene46391:CDS |
| CATATCCAAAACAAGCTTAG+AGG | 0.385021 | 8.4:-23802377 | None:intergenic |
| GTATCTTTAATGCATTCTTA+AGG | 0.388414 | 8.4:-23802483 | None:intergenic |
| TAATTCGATGGAAGTGAGAT+TGG | 0.394500 | 8.4:-23806579 | None:intergenic |
| TGAGCAAAAGTTTGATTTGT+CGG | 0.395598 | 8.4:-23803144 | None:intergenic |
| ATCTGGAAGACATTGCTGTT+AGG | 0.397175 | 8.4:+23804535 | MS.gene46391:CDS |
| CATGTTGAAGCCGGATACTT+TGG | 0.399331 | 8.4:+23802084 | MS.gene46391:CDS |
| ATGTCATATTGATGGAGTTT+CGG | 0.399687 | 8.4:+23802276 | MS.gene46391:CDS |
| ACAACTGTGAGAGGCTTTCA+TGG | 0.399723 | 8.4:+23801591 | MS.gene46391:CDS |
| GAGTTTCGGCGTCTTATGTT+CGG | 0.399790 | 8.4:+23802290 | MS.gene46391:CDS |
| TTACCAATCCACTCGCTTCT+GGG | 0.400810 | 8.4:-23806950 | None:intergenic |
| GGAAGTTTCAGGATAGGTTT+GGG | 0.406087 | 8.4:+23806819 | MS.gene46391:CDS |
| GGATCCTGCCTCGCTCTGGC+TGG | 0.408700 | 8.4:-23810560 | None:intergenic |
| AGAGGCTGCCGGGTCTCCAA+TGG | 0.412104 | 8.4:+23802789 | MS.gene46391:CDS |
| TTAGGTTGATGCTTAGTAAA+GGG | 0.412417 | 8.4:+23801918 | MS.gene46391:CDS |
| CAAAAGGCTTGAGCATGTTC+AGG | 0.413070 | 8.4:+23803461 | MS.gene46391:CDS |
| TTCAGGATAGGTTTGGGAGG+AGG | 0.415738 | 8.4:+23806825 | MS.gene46391:CDS |
| CCCTCTGCCAATGGTCGTCA+AGG | 0.418155 | 8.4:-23810706 | None:intergenic |
| TCTGGAAGACATTGCTGTTA+GGG | 0.418174 | 8.4:+23804536 | MS.gene46391:CDS |
| CTTACCCAGTAGAATTTCTT+GGG | 0.420305 | 8.4:-23801624 | None:intergenic |
| AATAGAATGTGTTTGGCAAA+AGG | 0.421173 | 8.4:-23801461 | None:intergenic |
| CTTTGTCCTAATTTCAGTCC+AGG | 0.422251 | 8.4:+23805168 | MS.gene46391:CDS |
| CAGCATTGAGATTGTTAGAA+TGG | 0.425587 | 8.4:-23803940 | None:intergenic |
| GTGTGTGGATATTCTTCTCT+TGG | 0.425953 | 8.4:+23803171 | MS.gene46391:CDS |
| GAGAGAGTGATGGAGGTCAT+TGG | 0.427733 | 8.4:+23803318 | MS.gene46391:CDS |
| GAGATTGTGGCTAAGATTAG+AGG | 0.429365 | 8.4:+23806905 | MS.gene46391:CDS |
| AGAGGAGGAAGAAGAGGAAG+AGG | 0.429775 | 8.4:+23806985 | MS.gene46391:CDS |
| GTGGAAGATGGATTTGCGTT+GGG | 0.431930 | 8.4:-23806510 | None:intergenic |
| TGCTGAGGGTAGGTGGATTG+TGG | 0.433291 | 8.4:+23803898 | MS.gene46391:CDS |
| GTAAGCTTAAATTTGCTTTG+AGG | 0.434557 | 8.4:+23801642 | MS.gene46391:CDS |
| TTTGCGAAAATGGACTGAAT+TGG | 0.437620 | 8.4:-23801550 | None:intergenic |
| GGGAGGAGGATGGCTAGGCC+GGG | 0.441186 | 8.4:+23806839 | MS.gene46391:CDS |
| GATTATCTACTTGGACTCAA+TGG | 0.441307 | 8.4:+23804006 | MS.gene46391:CDS |
| TTGGGAAGGGAGTGTGGCGG+TGG | 0.442489 | 8.4:-23806492 | None:intergenic |
| GCTGAGGGTAGGTGGATTGT+GGG | 0.448319 | 8.4:+23803899 | MS.gene46391:CDS |
| AGAGGGGAGCAGGAGAGGAT+TGG | 0.449394 | 8.4:+23806923 | MS.gene46391:CDS |
| TCGTGAGATTACGTTCTTGT+GGG | 0.449880 | 8.4:+23803200 | MS.gene46391:CDS |
| GGTGAGAAAAGCATGTGATT+TGG | 0.450178 | 8.4:+23801787 | MS.gene46391:CDS |
| GTGTCCTTCTGCAGTAGCTC+AGG | 0.450395 | 8.4:-23802514 | None:intergenic |
| GAGGTTTAAGTTGTGTTTGA+AGG | 0.450989 | 8.4:+23802135 | MS.gene46391:CDS |
| GGGCAGCCACCAAGAAGAGC+AGG | 0.453076 | 8.4:-23805114 | None:intergenic |
| CTCCTGCATCGGTTATACTT+AGG | 0.453393 | 8.4:+23801900 | MS.gene46391:CDS |
| ACATGCTACGGTCATTCATA+TGG | 0.453678 | 8.4:-23803341 | None:intergenic |
| CGAGAAACATCAAATTCAGT+TGG | 0.454207 | 8.4:+23802955 | MS.gene46391:CDS |
| TTGGACGACGCAGAGGCTGC+CGG | 0.454674 | 8.4:+23802778 | MS.gene46391:CDS |
| GGTTGGATCCTGCCTCGCTC+TGG | 0.454781 | 8.4:-23810564 | None:intergenic |
| CTTAAATTGGAAGGTAGAAA+AGG | 0.455376 | 8.4:+23802541 | MS.gene46391:CDS |
| TGATCCAGCCAGAGCGAGGC+AGG | 0.455817 | 8.4:+23810556 | MS.gene46391:CDS |
| CTGCAAGGCAAGAATGATAG+AGG | 0.456011 | 8.4:+23803077 | MS.gene46391:CDS |
| ATTTGCATTATGAGTATGTT+GGG | 0.456022 | 8.4:+23806798 | MS.gene46391:CDS |
| TAGCATCATCAGACAATTCT+GGG | 0.456910 | 8.4:-23802912 | None:intergenic |
| TGGTTTGAGAGATGAATTGA+TGG | 0.457026 | 8.4:+23802246 | MS.gene46391:CDS |
| GTCACAATAATGAAGAATAT+AGG | 0.458147 | 8.4:+23802416 | MS.gene46391:CDS |
| AGTGGAAGATGGATTTGCGT+TGG | 0.459799 | 8.4:-23806511 | None:intergenic |
| GAGGAGGATGGCTAGGCCGG+GGG | 0.464868 | 8.4:+23806841 | MS.gene46391:CDS |
| AAGCCGAGCTTTATCGCCAT+TGG | 0.466069 | 8.4:+23802451 | MS.gene46391:CDS |
| GGAGGAAGAAGAGGAAGAGG+AGG | 0.467961 | 8.4:+23806988 | MS.gene46391:CDS |
| CTTCCAGATGACCGCAACTT+AGG | 0.468161 | 8.4:-23804521 | None:intergenic |
| AACCTTAACTTCAGAAGAGT+TGG | 0.468520 | 8.4:+23810583 | MS.gene46391:CDS |
| TGTTCAGGAATTTAGAAAAT+GGG | 0.468922 | 8.4:+23803476 | MS.gene46391:CDS |
| TATTTGGATAAGTTGATGGT+TGG | 0.469239 | 8.4:+23806731 | MS.gene46391:CDS |
| GGCTAAGATTAGAGGGGAGC+AGG | 0.469678 | 8.4:+23806913 | MS.gene46391:CDS |
| AGATGGATTTGCGTTGGGAA+GGG | 0.470800 | 8.4:-23806505 | None:intergenic |
| AACTCTTCTGAAGTTAAGGT+TGG | 0.471512 | 8.4:-23810581 | None:intergenic |
| AGACATGATGTAACTGATAA+TGG | 0.472461 | 8.4:+23810527 | MS.gene46391:CDS |
| TCATCAATTGCAAGAAGCAT+TGG | 0.473801 | 8.4:+23801667 | MS.gene46391:CDS |
| AATGATAGAGGATGCATTGA+GGG | 0.474433 | 8.4:+23803089 | MS.gene46391:CDS |
| GAATTGAAATGTCATATTGA+TGG | 0.474600 | 8.4:+23802268 | MS.gene46391:CDS |
| GGAAATGCAAAGAGAAGCTC+AGG | 0.475179 | 8.4:+23802855 | MS.gene46391:CDS |
| TTTGAGGAGGTGTGAGGAGG+CGG | 0.475716 | 8.4:+23806883 | MS.gene46391:CDS |
| CTTAGGTTGATGCTTAGTAA+AGG | 0.476393 | 8.4:+23801917 | MS.gene46391:CDS |
| CTCCTCAACTCCTCCGTCGT+CGG | 0.476973 | 8.4:-23806674 | None:intergenic |
| TTGGATAAGTTGATGGTTGG+TGG | 0.478972 | 8.4:+23806734 | MS.gene46391:CDS |
| GCAGAGAGGGATTATCTACT+TGG | 0.479969 | 8.4:+23803997 | MS.gene46391:CDS |
| AGGCTGTGGTTGCGAAGAAT+AGG | 0.481727 | 8.4:+23806699 | MS.gene46391:CDS |
| GAGGCTGCCGGGTCTCCAAT+GGG | 0.486942 | 8.4:+23802790 | MS.gene46391:CDS |
| CTTTGCAAATCATTCTTCAT+GGG | 0.487097 | 8.4:+23801513 | MS.gene46391:CDS |
| TGTGTTCAATGGTTTGAAGC+TGG | 0.492000 | 8.4:+23803973 | MS.gene46391:CDS |
| AGGTTAAATACCAAAGTATC+CGG | 0.492631 | 8.4:-23802094 | None:intergenic |
| AGCGTTCAATATTTGAGCTA+AGG | 0.493514 | 8.4:-23802998 | None:intergenic |
| TGATTCAATAAATTAACCTC+AGG | 0.494016 | 8.4:-23801725 | None:intergenic |
| GTGCCATTGTCACTTACATC+AGG | 0.495094 | 8.4:-23810485 | None:intergenic |
| TATTTGCATTATGAGTATGT+TGG | 0.495284 | 8.4:+23806797 | MS.gene46391:CDS |
| AGTGAGAAGAGAGTGGAAGA+TGG | 0.496332 | 8.4:-23806522 | None:intergenic |
| AAACAGAAGCACAAAGCAAA+AGG | 0.499507 | 8.4:+23803445 | MS.gene46391:CDS |
| GGATTGCCTGCTCTTCTTGG+TGG | 0.500640 | 8.4:+23805108 | MS.gene46391:CDS |
| ATTATCTACTTGGACTCAAT+GGG | 0.502664 | 8.4:+23804007 | MS.gene46391:CDS |
| AGCATATGAAACTAGGAGAA+AGG | 0.507481 | 8.4:-23804052 | None:intergenic |
| AACCTAAGTATAACCGATGC+AGG | 0.507540 | 8.4:-23801902 | None:intergenic |
| TTCCACCCAAGAAATTCTAC+TGG | 0.508154 | 8.4:+23801619 | MS.gene46391:CDS |
| AGGTTACTTTGAGAGAGTGA+TGG | 0.512542 | 8.4:+23803308 | MS.gene46391:CDS |
| AAGATGGATTTGCGTTGGGA+AGG | 0.513028 | 8.4:-23806506 | None:intergenic |
| AGGTTTAAGTTGTGTTTGAA+GGG | 0.513970 | 8.4:+23802136 | MS.gene46391:CDS |
| TGACTTTAGTCGTTCGCGCA+TGG | 0.515901 | 8.4:+23804473 | MS.gene46391:intron |
| AACCGTAGCGTTCTAGGAAG+AGG | 0.515964 | 8.4:-23806556 | None:intergenic |
| TTTAATGCATTCTTAAGGTT+AGG | 0.517551 | 8.4:-23802478 | None:intergenic |
| TGGACGACGCAGAGGCTGCC+GGG | 0.519388 | 8.4:+23802779 | MS.gene46391:CDS |
| GAGAAACATCAAATTCAGTT+GGG | 0.521526 | 8.4:+23802956 | MS.gene46391:CDS |
| GTGTGAGGAGGCGGAGATTG+TGG | 0.522176 | 8.4:+23806892 | MS.gene46391:CDS |
| AAAATCCTTTCAATTCAAGA+TGG | 0.523642 | 8.4:-23805071 | None:intergenic |
| TTCGAATTCGGTTAATTCGA+TGG | 0.524106 | 8.4:-23806591 | None:intergenic |
| TTATGCCATCTTGAATTGAA+AGG | 0.524548 | 8.4:+23805066 | MS.gene46391:CDS |
| CATATATTTGAAAAGTTCGT+CGG | 0.525469 | 8.4:-23804568 | None:intergenic |
| ATGAGACCCTTGACGACCAT+TGG | 0.525545 | 8.4:+23810699 | MS.gene46391:CDS |
| TTTGCGTTGGGAAGGGAGTG+TGG | 0.530414 | 8.4:-23806498 | None:intergenic |
| ACATCATGTCTCACTCGAGC+TGG | 0.535245 | 8.4:-23810515 | None:intergenic |
| AGATTAGAGGGGAGCAGGAG+AGG | 0.536513 | 8.4:+23806918 | MS.gene46391:CDS |
| GTTTGAAGCTGGTGCAGAGA+GGG | 0.536613 | 8.4:+23803984 | MS.gene46391:CDS |
| ATGTTGGGAAGTTTCAGGAT+AGG | 0.539526 | 8.4:+23806813 | MS.gene46391:CDS |
| TCAGCCACTGTCCCCATTAG+CGG | 0.540444 | 8.4:-23802181 | None:intergenic |
| CTTAACTTCAGAAGAGTTGG+AGG | 0.541692 | 8.4:+23810586 | MS.gene46391:CDS |
| TATACTCAGCGACAGGATCT+GGG | 0.542169 | 8.4:+23802692 | MS.gene46391:CDS |
| CTGCTGCTAAACTTCATTCG+AGG | 0.545701 | 8.4:+23803285 | MS.gene46391:CDS |
| TGTAAGTGAATTGATTCATC+CGG | 0.545854 | 8.4:-23810610 | None:intergenic |
| ATCGCAACCCATTGGAGACC+CGG | 0.546045 | 8.4:-23802797 | None:intergenic |
| TTGTCACTTACATCAGGTTG+AGG | 0.546551 | 8.4:-23810479 | None:intergenic |
| ATATACAAATCGCAACCCAT+TGG | 0.549384 | 8.4:-23802805 | None:intergenic |
| TATTGGCCTCCCTCTGCCAA+TGG | 0.551435 | 8.4:-23810715 | None:intergenic |
| GGATAGGTTTGGGAGGAGGA+TGG | 0.552430 | 8.4:+23806829 | MS.gene46391:CDS |
| AGATTAAGAGATTTAAGAAG+AGG | 0.553863 | 8.4:-23805135 | None:intergenic |
| CTTCAGAAGAGTTGGAGGAC+CGG | 0.555990 | 8.4:+23810591 | MS.gene46391:CDS |
| AGCGAGTGGATTGGTAATGA+AGG | 0.556176 | 8.4:+23806956 | MS.gene46391:CDS |
| GTGCTTGCATTCAGATGGGA+TGG | 0.556348 | 8.4:+23802734 | MS.gene46391:CDS |
| ACAGCAGTGCTGAGGGTAGG+TGG | 0.557897 | 8.4:+23803891 | MS.gene46391:CDS |
| AATTTGATGTTTCTCGACAA+AGG | 0.559352 | 8.4:-23802948 | None:intergenic |
| TCAATCAAAGCACTAATGGC+GGG | 0.559871 | 8.4:+23804983 | MS.gene46391:intron |
| TTCAATCAAAGCACTAATGG+CGG | 0.560412 | 8.4:+23804982 | MS.gene46391:intron |
| TGAAGAATGATTTGCAAAGG+TGG | 0.561753 | 8.4:-23801509 | None:intergenic |
| GCAAATGCCGTCTCCTGCAT+CGG | 0.561846 | 8.4:+23801889 | MS.gene46391:CDS |
| CAACTGTGAGAGGCTTTCAT+GGG | 0.561869 | 8.4:+23801592 | MS.gene46391:CDS |
| GAATTGAAGTTATACACTAA+AGG | 0.562001 | 8.4:-23803039 | None:intergenic |
| TTATAGGAGTTTAAAAGCGT+CGG | 0.562383 | 8.4:+23803416 | MS.gene46391:CDS |
| GATCCAATGGCGATAAAGCT+CGG | 0.563204 | 8.4:-23802454 | None:intergenic |
| GATTAAGAGATTTAAGAAGA+GGG | 0.565300 | 8.4:-23805134 | None:intergenic |
| GGTTTGGGAGGAGGATGGCT+AGG | 0.565996 | 8.4:+23806834 | MS.gene46391:CDS |
| TGGTAATGAAGGACTTCAAG+AGG | 0.567722 | 8.4:+23806967 | MS.gene46391:CDS |
| CTTAAGGTTAGGCGATCCAA+TGG | 0.569065 | 8.4:-23802467 | None:intergenic |
| TACTGAAAACAGCAGTGCTG+AGG | 0.570088 | 8.4:+23803883 | MS.gene46391:CDS |
| CCTCTGCCAATGGTCGTCAA+GGG | 0.570477 | 8.4:-23810705 | None:intergenic |
| TTGTTCTTGATGCTTGTGTG+AGG | 0.571864 | 8.4:+23802116 | MS.gene46391:CDS |
| GTCCGACGACGGAGGAGTTG+AGG | 0.571986 | 8.4:+23806672 | MS.gene46391:CDS |
| GGGGAACTATACTCAGCGAC+AGG | 0.572990 | 8.4:+23802685 | MS.gene46391:CDS |
| GGAGTTGAGGAGGAAGGCTG+TGG | 0.573275 | 8.4:+23806685 | MS.gene46391:CDS |
| ACATGCAATCATGTTGAAGC+CGG | 0.577169 | 8.4:+23802075 | MS.gene46391:CDS |
| ACTCTTGTCAGCATATCAGA+AGG | 0.577591 | 8.4:+23802831 | MS.gene46391:CDS |
| AGATTGTGGCTAAGATTAGA+GGG | 0.578298 | 8.4:+23806906 | MS.gene46391:CDS |
| CTGGAAGACATTGCTGTTAG+GGG | 0.578454 | 8.4:+23804537 | MS.gene46391:CDS |
| CTGTGGTTGCGAAGAATAGG+AGG | 0.579748 | 8.4:+23806702 | MS.gene46391:CDS |
| CCCTTGACGACCATTGGCAG+AGG | 0.580251 | 8.4:+23810705 | MS.gene46391:CDS |
| ATCGTGAGATTACGTTCTTG+TGG | 0.581531 | 8.4:+23803199 | MS.gene46391:CDS |
| TAGGCATGTAAAGGCATCGA+GGG | 0.583703 | 8.4:+23803858 | MS.gene46391:intron |
| ACTTCAAGAGGAGGAAGAAG+AGG | 0.587570 | 8.4:+23806979 | MS.gene46391:CDS |
| ACCGTAGCGTTCTAGGAAGA+GGG | 0.588216 | 8.4:-23806555 | None:intergenic |
| CAGGAATTTAGAAAATGGGC+CGG | 0.589893 | 8.4:+23803480 | MS.gene46391:CDS |
| CGACGACGGAGGAGTTGAGG+AGG | 0.594340 | 8.4:+23806675 | MS.gene46391:CDS |
| TAGCGTTCTAGGAAGAGGGA+TGG | 0.596251 | 8.4:-23806551 | None:intergenic |
| GATCAGTGCTTGCATTCAGA+TGG | 0.596770 | 8.4:+23802729 | MS.gene46391:CDS |
| GACACTGTGCTTAAATTGGA+AGG | 0.600987 | 8.4:+23802532 | MS.gene46391:CDS |
| GTATCAGACCACCTCTCCCC+CGG | 0.601397 | 8.4:-23806857 | None:intergenic |
| TCCCTCTTCCTAGAACGCTA+CGG | 0.601725 | 8.4:+23806554 | MS.gene46391:CDS |
| GTTTGTGTACTCTTATGACG+AGG | 0.606788 | 8.4:+23805005 | MS.gene46391:CDS |
| AGTATAACCGATGCAGGAGA+CGG | 0.610123 | 8.4:-23801896 | None:intergenic |
| TGGTTGCGAAGAATAGGAGG+AGG | 0.610374 | 8.4:+23806705 | MS.gene46391:CDS |
| AGAGCCTGAGCTACTGCAGA+AGG | 0.611588 | 8.4:+23802510 | MS.gene46391:CDS |
| ACCCAGTAGAATTTCTTGGG+TGG | 0.611770 | 8.4:-23801621 | None:intergenic |
| TTGAGTTAATGCCGCTAATG+GGG | 0.612754 | 8.4:+23802170 | MS.gene46391:CDS |
| TGACGACCATTGGCAGAGGG+AGG | 0.614328 | 8.4:+23810709 | MS.gene46391:CDS |
| GAATGATAGAGGATGCATTG+AGG | 0.616177 | 8.4:+23803088 | MS.gene46391:CDS |
| GATTCAATAAATTAACCTCA+GGG | 0.617931 | 8.4:-23801724 | None:intergenic |
| ACTTGTCGGTATACATGCTA+CGG | 0.617949 | 8.4:-23803353 | None:intergenic |
| TGGAAGACATTGCTGTTAGG+GGG | 0.619762 | 8.4:+23804538 | MS.gene46391:CDS |
| CATCTGATCCAGCCAGAGCG+AGG | 0.622685 | 8.4:+23810552 | MS.gene46391:CDS |
| CAACCTGATGTAAGTGACAA+TGG | 0.623013 | 8.4:+23810482 | MS.gene46391:CDS |
| AGGTTAACTGGCACGTGACG+CGG | 0.623803 | 8.4:+23806633 | MS.gene46391:CDS |
| AGCGTTCTAGGAAGAGGGAT+GGG | 0.626163 | 8.4:-23806550 | None:intergenic |
| TCACACAAGCATCAAGAACA+AGG | 0.630209 | 8.4:-23802114 | None:intergenic |
| CGTGAGATTACGTTCTTGTG+GGG | 0.630778 | 8.4:+23803201 | MS.gene46391:CDS |
| TTACTTTGAGAGAGTGATGG+AGG | 0.632834 | 8.4:+23803311 | MS.gene46391:CDS |
| GGTCGCGAGTGAGAAGAGAG+TGG | 0.633188 | 8.4:-23806529 | None:intergenic |
| ACTGAAAACAGCAGTGCTGA+GGG | 0.636921 | 8.4:+23803884 | MS.gene46391:CDS |
| ATCAGTGCTTGCATTCAGAT+GGG | 0.637781 | 8.4:+23802730 | MS.gene46391:CDS |
| CTTAAATCTCTTAATCTACG+AGG | 0.638093 | 8.4:+23805141 | MS.gene46391:CDS |
| AAAACAGCAGTGCTGAGGGT+AGG | 0.640945 | 8.4:+23803888 | MS.gene46391:CDS |
| CCTTGACGACCATTGGCAGA+GGG | 0.641904 | 8.4:+23810706 | MS.gene46391:CDS |
| GTGCCCAGAAGCGAGTGGAT+TGG | 0.643717 | 8.4:+23806947 | MS.gene46391:CDS |
| CTGCTAAACTTCATTCGAGG+AGG | 0.644152 | 8.4:+23803288 | MS.gene46391:CDS |
| CTTGTCAGCATATCAGAAGG+AGG | 0.644355 | 8.4:+23802834 | MS.gene46391:CDS |
| GACGGAGGAGTTGAGGAGGA+AGG | 0.645151 | 8.4:+23806679 | MS.gene46391:CDS |
| GCGTTGGGAAGGGAGTGTGG+CGG | 0.647521 | 8.4:-23806495 | None:intergenic |
| AGTTTCAGGATAGGTTTGGG+AGG | 0.649952 | 8.4:+23806822 | MS.gene46391:CDS |
| TGTGCGATTGACCTAAGTTG+CGG | 0.650753 | 8.4:+23804510 | MS.gene46391:CDS |
| GGAGGCGATGAGAGAACGTG+AGG | 0.653428 | 8.4:+23806772 | MS.gene46391:CDS |
| TTTGTGTACTCTTATGACGA+GGG | 0.653464 | 8.4:+23805006 | MS.gene46391:CDS |
| GCGGTGGATTGTTGAGCGCG+TGG | 0.662158 | 8.4:-23806476 | None:intergenic |
| TCCACCCAAGAAATTCTACT+GGG | 0.667993 | 8.4:+23801620 | MS.gene46391:CDS |
| CTTGTTGAGTCCGACGACGG+AGG | 0.670780 | 8.4:+23806664 | MS.gene46391:CDS |
| AAGCTTGTTGAGTCCGACGA+CGG | 0.671431 | 8.4:+23806661 | MS.gene46391:CDS |
| TTGGTGTGCCCAGAAGCGAG+TGG | 0.671616 | 8.4:+23806942 | MS.gene46391:CDS |
| AGGAGAAAGGATCTTTGACA+TGG | 0.675423 | 8.4:-23804039 | None:intergenic |
| CCATGAAGAATGATTTGCAA+AGG | 0.681988 | 8.4:-23801512 | None:intergenic |
| TAATGAAGGACTTCAAGAGG+AGG | 0.688131 | 8.4:+23806970 | MS.gene46391:CDS |
| AATGCCGCTAATGGGGACAG+TGG | 0.690673 | 8.4:+23802177 | MS.gene46391:CDS |
| AACCCTAAAAGATGATTACG+AGG | 0.694518 | 8.4:+23806613 | MS.gene46391:CDS |
| TTAGGCATGTAAAGGCATCG+AGG | 0.701404 | 8.4:+23803857 | MS.gene46391:intron |
| AAACCTTTATGGTTACCCTG+AGG | 0.703667 | 8.4:+23801709 | MS.gene46391:CDS |
| GGTTGCGAAGAATAGGAGGA+GGG | 0.704365 | 8.4:+23806706 | MS.gene46391:CDS |
| GATTGTGGCTAAGATTAGAG+GGG | 0.720646 | 8.4:+23806907 | MS.gene46391:CDS |
| GGTTTGAAGCTGGTGCAGAG+AGG | 0.727402 | 8.4:+23803983 | MS.gene46391:CDS |
| GATTGTTAGAATGGTCAATG+TGG | 0.777666 | 8.4:-23803931 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 23801452 | 23810772 | 23801452 | ID=MS.gene46391 |
| chr8.4 | mRNA | 23801452 | 23810772 | 23801452 | ID=MS.gene46391.t1;Parent=MS.gene46391 |
| chr8.4 | exon | 23801452 | 23803501 | 23801452 | ID=MS.gene46391.t1.exon1;Parent=MS.gene46391.t1 |
| chr8.4 | CDS | 23801452 | 23803501 | 23801452 | ID=cds.MS.gene46391.t1;Parent=MS.gene46391.t1 |
| chr8.4 | exon | 23803559 | 23803601 | 23803559 | ID=MS.gene46391.t1.exon2;Parent=MS.gene46391.t1 |
| chr8.4 | CDS | 23803559 | 23803601 | 23803559 | ID=cds.MS.gene46391.t1;Parent=MS.gene46391.t1 |
| chr8.4 | exon | 23803871 | 23804062 | 23803871 | ID=MS.gene46391.t1.exon3;Parent=MS.gene46391.t1 |
| chr8.4 | CDS | 23803871 | 23804062 | 23803871 | ID=cds.MS.gene46391.t1;Parent=MS.gene46391.t1 |
| chr8.4 | exon | 23804482 | 23804598 | 23804482 | ID=MS.gene46391.t1.exon4;Parent=MS.gene46391.t1 |
| chr8.4 | CDS | 23804482 | 23804598 | 23804482 | ID=cds.MS.gene46391.t1;Parent=MS.gene46391.t1 |
| chr8.4 | exon | 23804993 | 23805189 | 23804993 | ID=MS.gene46391.t1.exon5;Parent=MS.gene46391.t1 |
| chr8.4 | CDS | 23804993 | 23805189 | 23804993 | ID=cds.MS.gene46391.t1;Parent=MS.gene46391.t1 |
| chr8.4 | exon | 23806444 | 23807063 | 23806444 | ID=MS.gene46391.t1.exon6;Parent=MS.gene46391.t1 |
| chr8.4 | CDS | 23806444 | 23807063 | 23806444 | ID=cds.MS.gene46391.t1;Parent=MS.gene46391.t1 |
| chr8.4 | exon | 23810470 | 23810772 | 23810470 | ID=MS.gene46391.t1.exon7;Parent=MS.gene46391.t1 |
| chr8.4 | CDS | 23810470 | 23810772 | 23810470 | ID=cds.MS.gene46391.t1;Parent=MS.gene46391.t1 |
| Gene Sequence |
| Protein sequence |
