Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059898.t1 | XP_003596480.1 | 93.2 | 103 | 7 | 0 | 1 | 103 | 1 | 103 | 1.60E-21 | 112.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059898.t1 | G7IR50 | 93.2 | 103 | 7 | 0 | 1 | 103 | 1 | 103 | 1.1e-21 | 112.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene059898 | 0.805656 | 1.20E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene059898 | 0.852786 | 3.67E-61 | -1.69E-46 |
| MS.gene050320 | MS.gene059898 | 0.802282 | 6.04E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene059898 | 0.809719 | 1.65E-50 | -1.69E-46 |
| MS.gene051063 | MS.gene059898 | 0.832757 | 7.88E-56 | -1.69E-46 |
| MS.gene051241 | MS.gene059898 | 0.800509 | 1.39E-48 | -1.69E-46 |
| MS.gene051243 | MS.gene059898 | 0.81531 | 9.87E-52 | -1.69E-46 |
| MS.gene051245 | MS.gene059898 | 0.832554 | 8.85E-56 | -1.69E-46 |
| MS.gene05134 | MS.gene059898 | 0.819316 | 1.24E-52 | -1.69E-46 |
| MS.gene051633 | MS.gene059898 | 0.806038 | 9.99E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene059898 | 0.830293 | 3.19E-55 | -1.69E-46 |
| MS.gene051748 | MS.gene059898 | 0.819229 | 1.30E-52 | -1.69E-46 |
| MS.gene051903 | MS.gene059898 | 0.846774 | 1.76E-59 | -1.69E-46 |
| MS.gene052286 | MS.gene059898 | 0.817764 | 2.78E-52 | -1.69E-46 |
| MS.gene052302 | MS.gene059898 | 0.805893 | 1.07E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene059898 | 0.804514 | 2.08E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene059898 | 0.817825 | 2.70E-52 | -1.69E-46 |
| MS.gene053109 | MS.gene059898 | 0.848723 | 5.11E-60 | -1.69E-46 |
| MS.gene055162 | MS.gene059898 | 0.844101 | 9.31E-59 | -1.69E-46 |
| MS.gene055441 | MS.gene059898 | 0.805102 | 1.57E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene059898 | 0.830753 | 2.46E-55 | -1.69E-46 |
| MS.gene056631 | MS.gene059898 | 0.857842 | 1.24E-62 | -1.69E-46 |
| MS.gene056760 | MS.gene059898 | 0.813101 | 3.03E-51 | -1.69E-46 |
| MS.gene057057 | MS.gene059898 | 0.839333 | 1.69E-57 | -1.69E-46 |
| MS.gene057094 | MS.gene059898 | 0.815443 | 9.22E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene059898 | 0.842049 | 3.28E-58 | -1.69E-46 |
| MS.gene057234 | MS.gene059898 | 0.844861 | 5.81E-59 | -1.69E-46 |
| MS.gene058055 | MS.gene059898 | 0.805284 | 1.44E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene059898 | 0.804775 | 1.84E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene059898 | 0.822664 | 2.10E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene059898 | 0.870655 | 1.24E-66 | -1.69E-46 |
| MS.gene059898 | MS.gene06001 | 0.8403 | 9.45E-58 | -1.69E-46 |
| MS.gene059898 | MS.gene061145 | 0.838131 | 3.45E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene06118 | 0.800403 | 1.47E-48 | -1.69E-46 |
| MS.gene059898 | MS.gene06172 | 0.860822 | 1.58E-63 | -1.69E-46 |
| MS.gene059898 | MS.gene061881 | 0.812479 | 4.15E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene061884 | 0.85039 | 1.75E-60 | -1.69E-46 |
| MS.gene059898 | MS.gene063119 | 0.817154 | 3.82E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene064071 | 0.88192 | 1.61E-70 | -1.69E-46 |
| MS.gene059898 | MS.gene064072 | 0.879109 | 1.63E-69 | -1.69E-46 |
| MS.gene059898 | MS.gene064668 | -0.805637 | 1.21E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene065357 | 0.830481 | 2.87E-55 | -1.69E-46 |
| MS.gene059898 | MS.gene066035 | 0.811103 | 8.28E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene06667 | 0.861904 | 7.39E-64 | -1.69E-46 |
| MS.gene059898 | MS.gene067746 | 0.823855 | 1.11E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene06806 | 0.804637 | 1.96E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene06837 | 0.816399 | 5.64E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene068553 | 0.807141 | 5.84E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene06865 | 0.812161 | 4.87E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene068695 | 0.832683 | 8.22E-56 | -1.69E-46 |
| MS.gene059898 | MS.gene06883 | 0.843258 | 1.57E-58 | -1.69E-46 |
| MS.gene059898 | MS.gene069310 | 0.861913 | 7.34E-64 | -1.69E-46 |
| MS.gene059898 | MS.gene06989 | 0.882654 | 8.69E-71 | -1.69E-46 |
| MS.gene059898 | MS.gene069962 | 0.848183 | 7.21E-60 | -1.69E-46 |
| MS.gene059898 | MS.gene070222 | 0.862496 | 4.86E-64 | -1.69E-46 |
| MS.gene059898 | MS.gene07089 | 0.810427 | 1.16E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene07090 | 0.831427 | 1.68E-55 | -1.69E-46 |
| MS.gene059898 | MS.gene07100 | 0.800741 | 1.25E-48 | -1.69E-46 |
| MS.gene059898 | MS.gene071298 | 0.811851 | 5.69E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene072057 | 0.802323 | 5.92E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene072150 | 0.814391 | 1.58E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene07217 | 0.893537 | 5.73E-75 | -1.69E-46 |
| MS.gene059898 | MS.gene07222 | 0.841792 | 3.83E-58 | -1.69E-46 |
| MS.gene059898 | MS.gene072386 | 0.818637 | 1.77E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene073003 | 0.807536 | 4.82E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene073332 | 0.824104 | 9.67E-54 | -1.69E-46 |
| MS.gene059898 | MS.gene073564 | 0.818255 | 2.16E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene073827 | 0.810082 | 1.38E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene074465 | 0.812579 | 3.95E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene074584 | 0.817584 | 3.06E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene07552 | 0.801799 | 7.59E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene08428 | 0.830643 | 2.62E-55 | -1.69E-46 |
| MS.gene059898 | MS.gene08545 | 0.802437 | 5.61E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene09032 | 0.866681 | 2.39E-65 | -1.69E-46 |
| MS.gene059898 | MS.gene09580 | 0.829273 | 5.64E-55 | -1.69E-46 |
| MS.gene059898 | MS.gene20280 | 0.80709 | 5.99E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene20302 | 0.848877 | 4.63E-60 | -1.69E-46 |
| MS.gene059898 | MS.gene20740 | 0.83754 | 4.89E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene22968 | 0.883038 | 6.29E-71 | -1.69E-46 |
| MS.gene059898 | MS.gene22983 | 0.80052 | 1.39E-48 | -1.69E-46 |
| MS.gene059898 | MS.gene23058 | 0.840297 | 9.46E-58 | -1.69E-46 |
| MS.gene059898 | MS.gene23059 | 0.863344 | 2.66E-64 | -1.69E-46 |
| MS.gene059898 | MS.gene23491 | 0.823765 | 1.16E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene23954 | 0.85962 | 3.65E-63 | -1.69E-46 |
| MS.gene059898 | MS.gene24561 | 0.834039 | 3.77E-56 | -1.69E-46 |
| MS.gene059898 | MS.gene24930 | 0.822723 | 2.03E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene25077 | 0.817914 | 2.57E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene25475 | 0.822969 | 1.78E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene26584 | 0.806827 | 6.81E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene27879 | 0.818812 | 1.61E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene27991 | 0.871023 | 9.37E-67 | -1.69E-46 |
| MS.gene059898 | MS.gene28323 | 0.811258 | 7.66E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene30335 | 0.811494 | 6.81E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene31196 | 0.80924 | 2.09E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene31405 | 0.802088 | 6.62E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene32995 | 0.818278 | 2.13E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene33183 | 0.81211 | 5.00E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene33384 | 0.812366 | 4.40E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene33907 | 0.828447 | 8.95E-55 | -1.69E-46 |
| MS.gene059898 | MS.gene35214 | 0.896056 | 5.32E-76 | -1.69E-46 |
| MS.gene059898 | MS.gene36146 | 0.813037 | 3.13E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene36392 | 0.803637 | 3.17E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene36468 | 0.810525 | 1.10E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene36568 | 0.800786 | 1.22E-48 | -1.69E-46 |
| MS.gene059898 | MS.gene36673 | 0.806935 | 6.46E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene36918 | 0.822019 | 2.96E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene39317 | 0.832845 | 7.49E-56 | -1.69E-46 |
| MS.gene059898 | MS.gene39572 | 0.803027 | 4.24E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene40648 | 0.832244 | 1.06E-55 | -1.69E-46 |
| MS.gene059898 | MS.gene41171 | 0.804098 | 2.54E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene41455 | 0.823854 | 1.11E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene42339 | -0.809079 | 2.26E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene42751 | 0.817075 | 3.98E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene43491 | 0.825521 | 4.48E-54 | -1.69E-46 |
| MS.gene059898 | MS.gene43537 | 0.851976 | 6.25E-61 | -1.69E-46 |
| MS.gene059898 | MS.gene43602 | 0.838242 | 3.23E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene43992 | 0.825334 | 4.96E-54 | -1.69E-46 |
| MS.gene059898 | MS.gene44260 | 0.821128 | 4.76E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene44390 | 0.8067 | 7.24E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene45578 | 0.855659 | 5.44E-62 | -1.69E-46 |
| MS.gene059898 | MS.gene46391 | 0.803942 | 2.74E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene47531 | 0.800623 | 1.32E-48 | -1.69E-46 |
| MS.gene059898 | MS.gene47955 | 0.852857 | 3.51E-61 | -1.69E-46 |
| MS.gene059898 | MS.gene48990 | -0.80508 | 1.59E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene49486 | 0.808171 | 3.53E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene51658 | 0.840264 | 9.66E-58 | -1.69E-46 |
| MS.gene059898 | MS.gene54221 | 0.800398 | 1.47E-48 | -1.69E-46 |
| MS.gene059898 | MS.gene54282 | 0.828694 | 7.80E-55 | -1.69E-46 |
| MS.gene059898 | MS.gene54919 | 0.836011 | 1.20E-56 | -1.69E-46 |
| MS.gene059898 | MS.gene55732 | 0.830269 | 3.23E-55 | -1.69E-46 |
| MS.gene059898 | MS.gene55853 | 0.814496 | 1.50E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene55887 | 0.836932 | 7.00E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene55988 | 0.811056 | 8.47E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene56011 | 0.807832 | 4.17E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene56451 | 0.815045 | 1.13E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene56656 | 0.813801 | 2.13E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene57210 | 0.842491 | 2.50E-58 | -1.69E-46 |
| MS.gene059898 | MS.gene58693 | 0.805551 | 1.26E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene59979 | 0.801783 | 7.65E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene60717 | 0.835502 | 1.62E-56 | -1.69E-46 |
| MS.gene059898 | MS.gene61542 | 0.822859 | 1.89E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene61543 | 0.856659 | 2.77E-62 | -1.69E-46 |
| MS.gene059898 | MS.gene62558 | 0.802997 | 4.30E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene62834 | 0.815846 | 7.50E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene63902 | 0.812404 | 4.31E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene64920 | 0.80967 | 1.69E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene65076 | 0.838296 | 3.13E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene65412 | 0.853964 | 1.69E-61 | -1.69E-46 |
| MS.gene059898 | MS.gene66089 | 0.862969 | 3.48E-64 | -1.69E-46 |
| MS.gene059898 | MS.gene66475 | 0.805551 | 1.26E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene67884 | 0.841463 | 4.68E-58 | -1.69E-46 |
| MS.gene059898 | MS.gene68136 | 0.808012 | 3.82E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene68171 | 0.826011 | 3.43E-54 | -1.69E-46 |
| MS.gene059898 | MS.gene68735 | 0.804381 | 2.22E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene68810 | 0.875799 | 2.32E-68 | -1.69E-46 |
| MS.gene059898 | MS.gene68840 | 0.806181 | 9.32E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene69262 | 0.851302 | 9.69E-61 | -1.69E-46 |
| MS.gene059898 | MS.gene69649 | 0.836641 | 8.31E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene69947 | 0.841584 | 4.35E-58 | -1.69E-46 |
| MS.gene059898 | MS.gene70460 | 0.839119 | 1.92E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene70989 | -0.80078 | 1.23E-48 | -1.69E-46 |
| MS.gene059898 | MS.gene71299 | 0.807556 | 4.77E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene71547 | 0.814037 | 1.89E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene71949 | 0.822743 | 2.01E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene72285 | 0.823186 | 1.59E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene72735 | 0.821979 | 3.03E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene73364 | 0.817782 | 2.76E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene74854 | 0.808684 | 2.74E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene75477 | 0.82972 | 4.40E-55 | -1.69E-46 |
| MS.gene059898 | MS.gene75680 | 0.803753 | 3.00E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene75923 | 0.84033 | 9.28E-58 | -1.69E-46 |
| MS.gene059898 | MS.gene76478 | 0.835002 | 2.16E-56 | -1.69E-46 |
| MS.gene059898 | MS.gene76576 | 0.809653 | 1.70E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene77282 | 0.83265 | 8.38E-56 | -1.69E-46 |
| MS.gene059898 | MS.gene78659 | 0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene79605 | 0.815379 | 9.53E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene79884 | 0.82726 | 1.73E-54 | -1.69E-46 |
| MS.gene059898 | MS.gene81361 | 0.844339 | 8.04E-59 | -1.69E-46 |
| MS.gene059898 | MS.gene82827 | 0.860004 | 2.79E-63 | -1.69E-46 |
| MS.gene059898 | MS.gene83217 | 0.873663 | 1.24E-67 | -1.69E-46 |
| MS.gene059898 | MS.gene83495 | 0.831103 | 2.02E-55 | -1.69E-46 |
| MS.gene059898 | MS.gene84455 | 0.823123 | 1.64E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene86265 | 0.836502 | 9.01E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene86350 | 0.850996 | 1.18E-60 | -1.69E-46 |
| MS.gene059898 | MS.gene86380 | 0.815257 | 1.01E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene86381 | 0.80592 | 1.06E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene86392 | 0.859076 | 5.31E-63 | -1.69E-46 |
| MS.gene059898 | MS.gene88229 | 0.860263 | 2.33E-63 | -1.69E-46 |
| MS.gene059898 | MS.gene88371 | 0.959988 | 4.72E-118 | -1.69E-46 |
| MS.gene059898 | MS.gene88427 | 0.81126 | 7.65E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene89027 | 0.852583 | 4.20E-61 | -1.69E-46 |
| MS.gene059898 | MS.gene89036 | 0.8046 | 2.00E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene89562 | 0.80076 | 1.24E-48 | -1.69E-46 |
| MS.gene059898 | MS.gene89677 | 0.823268 | 1.52E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene89721 | 0.836757 | 7.76E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene90981 | 0.813705 | 2.24E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene91524 | 0.802862 | 4.59E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene92338 | 0.815206 | 1.04E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene92572 | 0.838312 | 3.10E-57 | -1.69E-46 |
| MS.gene059898 | MS.gene92819 | 0.814947 | 1.19E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene93973 | 0.853244 | 2.72E-61 | -1.69E-46 |
| MS.gene059898 | MS.gene95039 | 0.81914 | 1.36E-52 | -1.69E-46 |
| MS.gene059898 | MS.gene95436 | 0.80124 | 9.88E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene96322 | 0.811494 | 6.81E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene97008 | 0.830992 | 2.15E-55 | -1.69E-46 |
| MS.gene059898 | MS.gene97237 | 0.823386 | 1.42E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene98141 | 0.804227 | 2.39E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene99313 | 0.838948 | 2.12E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059898.t1 | MTR_2g080990 | 97.087 | 103 | 3 | 0 | 1 | 103 | 1 | 103 | 6.75e-66 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 13 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGGCAGACTTCTCATTTG+CGG | 0.410034 | 2.2:-15076652 | None:intergenic |
| GGAGCTAAAATCAAGGTTGC+TGG | 0.433275 | 2.2:+15074670 | MS.gene059898:CDS |
| GCAATGGATACATCAGAATC+AGG | 0.468029 | 2.2:+15074649 | MS.gene059898:intron |
| GAGTATACCTTGAGGTGCTT+CGG | 0.483494 | 2.2:-15074487 | None:intergenic |
| GTCGGTTATGTCCATCGAAA+CGG | 0.525995 | 2.2:-15074454 | None:intergenic |
| AACAGGAAGGTGAAGCAGAA+TGG | 0.552894 | 2.2:+15076570 | MS.gene059898:intron |
| TTCAGACTTGGAAACTTTCG+CGG | 0.568580 | 2.2:-15076670 | None:intergenic |
| AGAATCAGGAGCTAAAATCA+AGG | 0.594733 | 2.2:+15074663 | MS.gene059898:CDS |
| GGAAGGTGAAGCAGAATGGA+AGG | 0.604858 | 2.2:+15076574 | MS.gene059898:intron |
| ATCGTTTCCGAAGCACCTCA+AGG | 0.606213 | 2.2:+15074480 | MS.gene059898:CDS |
| GCTAAAATCAAGGTTGCTGG+TGG | 0.607057 | 2.2:+15074673 | MS.gene059898:CDS |
| TGCTTCGGAAACGATGGTGT+CGG | 0.636322 | 2.2:-15074472 | None:intergenic |
| TTGAGGTGCTTCGGAAACGA+TGG | 0.645225 | 2.2:-15074478 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTATAATTTTTTAAAGA+AGG | + | chr2.2:15075552-15075571 | MS.gene059898:intron | 10.0% |
| !! | AAAAACAAGAAGAATAAAAA+CGG | + | chr2.2:15074429-15074448 | MS.gene059898:CDS | 15.0% |
| !! | AATAAAGAAAACTTACAAAA+TGG | - | chr2.2:15074704-15074723 | None:intergenic | 15.0% |
| !! | TTAAACCACAAAAAAAAAAA+AGG | - | chr2.2:15074603-15074622 | None:intergenic | 15.0% |
| !!! | ATTTTCCTTTTTTTTTTTTG+TGG | + | chr2.2:15074595-15074614 | MS.gene059898:intron | 15.0% |
| !!! | TTATAATTTTTTAAAGAAGG+CGG | + | chr2.2:15075555-15075574 | MS.gene059898:intron | 15.0% |
| !! | AAATCAAACTTATTGGATTA+AGG | - | chr2.2:15075037-15075056 | None:intergenic | 20.0% |
| !! | AATCAAACTTATTGGATTAA+GGG | - | chr2.2:15075036-15075055 | None:intergenic | 20.0% |
| !! | TTAATCCAATAAGTTTGATT+TGG | + | chr2.2:15075036-15075055 | MS.gene059898:intron | 20.0% |
| !! | TTGCATAATAATAGTTGTAT+GGG | + | chr2.2:15076231-15076250 | MS.gene059898:intron | 20.0% |
| !! | TTTGCATAATAATAGTTGTA+TGG | + | chr2.2:15076230-15076249 | MS.gene059898:intron | 20.0% |
| !!! | CATAAAGTTTTAAACAATGA+TGG | - | chr2.2:15076384-15076403 | None:intergenic | 20.0% |
| !!! | CATCATTGTTTAAAACTTTA+TGG | + | chr2.2:15076382-15076401 | MS.gene059898:intron | 20.0% |
| !!! | TTAATTTGTTTATCCAAACA+AGG | - | chr2.2:15074898-15074917 | None:intergenic | 20.0% |
| ! | AAATACCAACTTAGAATATG+AGG | - | chr2.2:15075145-15075164 | None:intergenic | 25.0% |
| ! | AATGATTGTTTGATAGAACA+AGG | + | chr2.2:15076045-15076064 | MS.gene059898:intron | 25.0% |
| ! | ACAGTTAACATATAACTCAT+AGG | - | chr2.2:15075958-15075977 | None:intergenic | 25.0% |
| ! | AGTCTATCAATAGGAAAATT+TGG | + | chr2.2:15076195-15076214 | MS.gene059898:intron | 25.0% |
| ! | TAGAGAATCACAAGTTAAAT+GGG | + | chr2.2:15074770-15074789 | MS.gene059898:intron | 25.0% |
| ! | TTCTATCAAACAATCATTCA+AGG | - | chr2.2:15076043-15076062 | None:intergenic | 25.0% |
| !! | AACCAAAGCATTAAAAAACT+AGG | - | chr2.2:15074827-15074846 | None:intergenic | 25.0% |
| !! | ACCAAAGCATTAAAAAACTA+GGG | - | chr2.2:15074826-15074845 | None:intergenic | 25.0% |
| !! | TATTATGTTTTGCAAGTAGA+TGG | - | chr2.2:15076457-15076476 | None:intergenic | 25.0% |
| !! | TTTAAAACATATATGTGCGT+AGG | - | chr2.2:15075590-15075609 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGTCATCAAAATG+AGG | - | chr2.2:15075879-15075898 | None:intergenic | 25.0% |
| !!! | AAAAAGTGTCATCAAAATGA+GGG | - | chr2.2:15075878-15075897 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTGTTTTCAGACT+TGG | - | chr2.2:15076685-15076704 | None:intergenic | 25.0% |
| !!! | TTTTTTAATGCTTTGGTTGA+TGG | + | chr2.2:15074829-15074848 | MS.gene059898:intron | 25.0% |
| AAAACTGATGAACAATTCAC+AGG | - | chr2.2:15076284-15076303 | None:intergenic | 30.0% | |
| AATATTCTATACTTTCGCAG+AGG | + | chr2.2:15076309-15076328 | MS.gene059898:intron | 30.0% | |
| ACTTAGAATATGAGGAGATA+TGG | - | chr2.2:15075137-15075156 | None:intergenic | 30.0% | |
| AGAGAATCACAAGTTAAATG+GGG | + | chr2.2:15074771-15074790 | MS.gene059898:intron | 30.0% | |
| AGCCAAATAGAGAGTTAAAT+AGG | + | chr2.2:15076102-15076121 | MS.gene059898:intron | 30.0% | |
| ATAACTGACAATAGTTAGCT+AGG | + | chr2.2:15076155-15076174 | MS.gene059898:intron | 30.0% | |
| ATATCAATCGAGTCTATGAT+AGG | + | chr2.2:15076075-15076094 | MS.gene059898:intron | 30.0% | |
| ATCACTTAACTGTGTGATAT+AGG | + | chr2.2:15075222-15075241 | MS.gene059898:intron | 30.0% | |
| ATCATAGACTCGATTGATAT+CGG | - | chr2.2:15076075-15076094 | None:intergenic | 30.0% | |
| ATTCAAGGCAAAAATTCTGA+TGG | - | chr2.2:15076028-15076047 | None:intergenic | 30.0% | |
| CATGTTATAATTGAGGACAT+TGG | - | chr2.2:15075990-15076009 | None:intergenic | 30.0% | |
| CCAAATAGAGAGTTAAATAG+GGG | + | chr2.2:15076104-15076123 | MS.gene059898:intron | 30.0% | |
| CTTACAAAATTGATCAGCAT+TGG | - | chr2.2:15075769-15075788 | None:intergenic | 30.0% | |
| CTTATTCATAACCACTCATA+TGG | - | chr2.2:15074934-15074953 | None:intergenic | 30.0% | |
| GAATACGAACAATTCACTAA+TGG | + | chr2.2:15075734-15075753 | MS.gene059898:intron | 30.0% | |
| GACGAAGGCTAAAAATATAA+GGG | - | chr2.2:15074728-15074747 | None:intergenic | 30.0% | |
| GCCAAATAGAGAGTTAAATA+GGG | + | chr2.2:15076103-15076122 | MS.gene059898:intron | 30.0% | |
| GTAGAGAATCACAAGTTAAA+TGG | + | chr2.2:15074769-15074788 | MS.gene059898:intron | 30.0% | |
| TATCTCCTCATATTCTAAGT+TGG | + | chr2.2:15075137-15075156 | MS.gene059898:intron | 30.0% | |
| TGTTCGTATTCTAATTACAC+AGG | - | chr2.2:15075725-15075744 | None:intergenic | 30.0% | |
| TTGCACCAAATCAAACTTAT+TGG | - | chr2.2:15075044-15075063 | None:intergenic | 30.0% | |
| ! | ATAGTAGTTGCCTTGTATTT+TGG | + | chr2.2:15075493-15075512 | MS.gene059898:intron | 30.0% |
| ! | ATTGGATGTTGTTGTTGAAT+TGG | + | chr2.2:15075094-15075113 | MS.gene059898:intron | 30.0% |
| ! | TAGTAGTTGCCTTGTATTTT+GGG | + | chr2.2:15075494-15075513 | MS.gene059898:intron | 30.0% |
| ! | TTGGATGTTGTTGTTGAATT+GGG | + | chr2.2:15075095-15075114 | MS.gene059898:intron | 30.0% |
| !! | AACACTTTTTGATCTCTTCA+TGG | - | chr2.2:15076601-15076620 | None:intergenic | 30.0% |
| !! | AATCACATTTACTTTTGCAC+TGG | + | chr2.2:15075363-15075382 | MS.gene059898:intron | 30.0% |
| !! | ACACTTTTTGATCTCTTCAT+GGG | - | chr2.2:15076600-15076619 | None:intergenic | 30.0% |
| !! | CTTTTGTTTATTTGCAGCAA+TGG | + | chr2.2:15074633-15074652 | MS.gene059898:intron | 30.0% |
| !! | TATTCTTTAAAGCATGCACT+TGG | + | chr2.2:15075443-15075462 | MS.gene059898:intron | 30.0% |
| !! | TGTATGGGATATTTGTTATC+AGG | + | chr2.2:15076246-15076265 | MS.gene059898:intron | 30.0% |
| !!! | ACCCTAGTTTTTTAATGCTT+TGG | + | chr2.2:15074822-15074841 | MS.gene059898:intron | 30.0% |
| !!! | GCAATGTAGTTTTTTTTGCA+TGG | + | chr2.2:15075321-15075340 | MS.gene059898:intron | 30.0% |
| AATCTCACATGTGAATATGC+TGG | + | chr2.2:15074968-15074987 | MS.gene059898:intron | 35.0% | |
| ACTGTGTGATATAGGAAATC+TGG | + | chr2.2:15075230-15075249 | MS.gene059898:intron | 35.0% | |
| AGAATCAGGAGCTAAAATCA+AGG | + | chr2.2:15074663-15074682 | MS.gene059898:CDS | 35.0% | |
| AGTCATCATTCTTTGTCGAA+CGG | + | chr2.2:15075194-15075213 | MS.gene059898:intron | 35.0% | |
| AGTTGAACGCAATTATAGGA+GGG | - | chr2.2:15075264-15075283 | None:intergenic | 35.0% | |
| ATCTGTTGAGTTCTTGAAGA+AGG | + | chr2.2:15075419-15075438 | MS.gene059898:intron | 35.0% | |
| CAAAGCAAACCCAAAATACA+AGG | - | chr2.2:15075506-15075525 | None:intergenic | 35.0% | |
| CCAATAATCAGTTGAGTAAC+TGG | - | chr2.2:15075079-15075098 | None:intergenic | 35.0% | |
| CCAGTTACTCAACTGATTAT+TGG | + | chr2.2:15075076-15075095 | MS.gene059898:intron | 35.0% | |
| CCATTGCTACAATGAAGAAA+TGG | - | chr2.2:15075302-15075321 | None:intergenic | 35.0% | |
| CCATTTCTTCATTGTAGCAA+TGG | + | chr2.2:15075299-15075318 | MS.gene059898:intron | 35.0% | |
| CCCCTATTTAACTCTCTATT+TGG | - | chr2.2:15076107-15076126 | None:intergenic | 35.0% | |
| CGACGAAGGCTAAAAATATA+AGG | - | chr2.2:15074729-15074748 | None:intergenic | 35.0% | |
| CTGTGTGATATAGGAAATCT+GGG | + | chr2.2:15075231-15075250 | MS.gene059898:intron | 35.0% | |
| GCAACGATTTGAGAAAATGT+TGG | - | chr2.2:15074867-15074886 | None:intergenic | 35.0% | |
| GTACAGTTGAACGCAATTAT+AGG | - | chr2.2:15075268-15075287 | None:intergenic | 35.0% | |
| TAATCAGTTGAGTAACTGGA+CGG | - | chr2.2:15075075-15075094 | None:intergenic | 35.0% | |
| TCATAGACTCGATTGATATC+GGG | - | chr2.2:15076074-15076093 | None:intergenic | 35.0% | |
| TCGCGAAGTATATTACAGAA+GGG | - | chr2.2:15076341-15076360 | None:intergenic | 35.0% | |
| TCTGTTGAGTTCTTGAAGAA+GGG | + | chr2.2:15075420-15075439 | MS.gene059898:intron | 35.0% | |
| TTACACAGGCAATTTAGTGA+TGG | - | chr2.2:15075711-15075730 | None:intergenic | 35.0% | |
| TTCTCAAATCGTTGCAATTC+AGG | + | chr2.2:15074872-15074891 | MS.gene059898:intron | 35.0% | |
| TTTGCAAGTAGATGGAAATC+AGG | - | chr2.2:15076449-15076468 | None:intergenic | 35.0% | |
| ! | ATAATGTTTTCTGCTCTGCT+GGG | - | chr2.2:15075684-15075703 | None:intergenic | 35.0% |
| ! | TTGCTCTTCTGTTTTGTCAT+GGG | + | chr2.2:15075928-15075947 | MS.gene059898:intron | 35.0% |
| ! | TTTGCTCTTCTGTTTTGTCA+TGG | + | chr2.2:15075927-15075946 | MS.gene059898:intron | 35.0% |
| !! | TTACTTTTGCACTGGATGTT+AGG | + | chr2.2:15075371-15075390 | MS.gene059898:intron | 35.0% |
| AAGTTAAATGGGGTTTAGCG+CGG | + | chr2.2:15074781-15074800 | MS.gene059898:intron | 40.0% | |
| ACTGATGAACAATTCACAGG+AGG | - | chr2.2:15076281-15076300 | None:intergenic | 40.0% | |
| AGTTAGCTAGGAAGAGTAGA+TGG | + | chr2.2:15076167-15076186 | MS.gene059898:intron | 40.0% | |
| AGTTCAGTTCGCATAGTTGA+TGG | + | chr2.2:15075824-15075843 | MS.gene059898:intron | 40.0% | |
| ATGGATGGGAGTCTATCAAT+AGG | + | chr2.2:15076186-15076205 | MS.gene059898:intron | 40.0% | |
| CAGTTGAACGCAATTATAGG+AGG | - | chr2.2:15075265-15075284 | None:intergenic | 40.0% | |
| CTCGCGAAGTATATTACAGA+AGG | - | chr2.2:15076342-15076361 | None:intergenic | 40.0% | |
| GCAATGGATACATCAGAATC+AGG | + | chr2.2:15074649-15074668 | MS.gene059898:intron | 40.0% | |
| GTGTTTACTCCACGACATAT+TGG | - | chr2.2:15076413-15076432 | None:intergenic | 40.0% | |
| TCACATGTGAATATGCTGGT+AGG | + | chr2.2:15074972-15074991 | MS.gene059898:intron | 40.0% | |
| TCCAGCGCATGTTATAATTG+AGG | - | chr2.2:15075997-15076016 | None:intergenic | 40.0% | |
| TCCTCAATTATAACATGCGC+TGG | + | chr2.2:15075993-15076012 | MS.gene059898:intron | 40.0% | |
| TGAAAAGCGAGTATACCTTG+AGG | - | chr2.2:15074498-15074517 | None:intergenic | 40.0% | |
| TTCAGACTTGGAAACTTTCG+CGG | - | chr2.2:15076673-15076692 | None:intergenic | 40.0% | |
| ! | GATAATGTTTTCTGCTCTGC+TGG | - | chr2.2:15075685-15075704 | None:intergenic | 40.0% |
| !! | TGGATGTTAGGTTCTAGACT+TGG | + | chr2.2:15075383-15075402 | MS.gene059898:intron | 40.0% |
| AACAATTCACAGGAGGTTCG+AGG | - | chr2.2:15076274-15076293 | None:intergenic | 45.0% | |
| AACAGGAAGGTGAAGCAGAA+TGG | + | chr2.2:15076570-15076589 | MS.gene059898:intron | 45.0% | |
| ACGCAATTATAGGAGGGAAG+AGG | - | chr2.2:15075258-15075277 | None:intergenic | 45.0% | |
| AGCTAGGAAGAGTAGATGGA+TGG | + | chr2.2:15076171-15076190 | MS.gene059898:intron | 45.0% | |
| CGCAATTATAGGAGGGAAGA+GGG | - | chr2.2:15075257-15075276 | None:intergenic | 45.0% | |
| GCTAAAATCAAGGTTGCTGG+TGG | + | chr2.2:15074673-15074692 | MS.gene059898:CDS | 45.0% | |
| GCTAGGAAGAGTAGATGGAT+GGG | + | chr2.2:15076172-15076191 | MS.gene059898:intron | 45.0% | |
| GGAGCTAAAATCAAGGTTGC+TGG | + | chr2.2:15074670-15074689 | MS.gene059898:CDS | 45.0% | |
| GTAGATGGAAATCAGGAAGC+AGG | - | chr2.2:15076442-15076461 | None:intergenic | 45.0% | |
| GTCGGTTATGTCCATCGAAA+CGG | - | chr2.2:15074457-15074476 | None:intergenic | 45.0% | |
| TGCAGCTTCTACCATATGAG+TGG | + | chr2.2:15074920-15074939 | MS.gene059898:intron | 45.0% | |
| ! | ATTATCAAGCATCGCGACGA+AGG | - | chr2.2:15074743-15074762 | None:intergenic | 45.0% |
| ! | GAGTATACCTTGAGGTGCTT+CGG | - | chr2.2:15074490-15074509 | None:intergenic | 45.0% |
| !! | GTTGCAATTCAGGCCTTGTT+TGG | + | chr2.2:15074882-15074901 | MS.gene059898:intron | 45.0% |
| !! | TAAAAACGGTGCCGTTTCGA+TGG | + | chr2.2:15074443-15074462 | MS.gene059898:CDS | 45.0% |
| !!! | GCATGCTTTTGCTCTGAAAC+AGG | + | chr2.2:15076553-15076572 | MS.gene059898:intron | 45.0% |
| !!! | GCTTTTGCTCTGAAACAGGA+AGG | + | chr2.2:15076557-15076576 | MS.gene059898:intron | 45.0% |
| ATGGTGCGTCCAATATGTCG+TGG | + | chr2.2:15076401-15076420 | MS.gene059898:intron | 50.0% | |
| GGAAGGTGAAGCAGAATGGA+AGG | + | chr2.2:15076574-15076593 | MS.gene059898:intron | 50.0% | |
| TGCTTCGGAAACGATGGTGT+CGG | - | chr2.2:15074475-15074494 | None:intergenic | 50.0% | |
| ! | ATCGTTTCCGAAGCACCTCA+AGG | + | chr2.2:15074480-15074499 | MS.gene059898:CDS | 50.0% |
| ! | TTGAGGTGCTTCGGAAACGA+TGG | - | chr2.2:15074481-15074500 | None:intergenic | 50.0% |
| !! | ACTTGGTGCACTGCAAGATG+TGG | + | chr2.2:15075460-15075479 | MS.gene059898:intron | 50.0% |
| CGCGGCAGACTTCTCATTTG+CGG | - | chr2.2:15076655-15076674 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 15074411 | 15076737 | 15074411 | ID=MS.gene059898 |
| chr2.2 | mRNA | 15074411 | 15076737 | 15074411 | ID=MS.gene059898.t1;Parent=MS.gene059898 |
| chr2.2 | exon | 15074411 | 15074501 | 15074411 | ID=MS.gene059898.t1.exon1;Parent=MS.gene059898.t1 |
| chr2.2 | CDS | 15074411 | 15074501 | 15074411 | ID=cds.MS.gene059898.t1;Parent=MS.gene059898.t1 |
| chr2.2 | exon | 15074650 | 15074707 | 15074650 | ID=MS.gene059898.t1.exon2;Parent=MS.gene059898.t1 |
| chr2.2 | CDS | 15074650 | 15074707 | 15074650 | ID=cds.MS.gene059898.t1;Parent=MS.gene059898.t1 |
| chr2.2 | exon | 15076575 | 15076737 | 15076575 | ID=MS.gene059898.t1.exon3;Parent=MS.gene059898.t1 |
| chr2.2 | CDS | 15076575 | 15076737 | 15076575 | ID=cds.MS.gene059898.t1;Parent=MS.gene059898.t1 |
| Gene Sequence |
| Protein sequence |
