Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46428.t1 | XP_003590299.1 | 97.2 | 753 | 21 | 0 | 1 | 753 | 1 | 753 | 0.00E+00 | 1446.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46428.t1 | G7I7Z4 | 97.2 | 753 | 21 | 0 | 1 | 753 | 1 | 753 | 0.0e+00 | 1446.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051768 | MS.gene46428 | 0.832975 | 6.96E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46428.t1 | MTR_1g056180 | 97.211 | 753 | 21 | 0 | 1 | 753 | 1 | 753 | 0.0 | 1509 |
| MS.gene46428.t1 | MTR_7g106540 | 58.739 | 761 | 265 | 17 | 1 | 746 | 1 | 727 | 0.0 | 807 |
| MS.gene46428.t1 | MTR_7g106540 | 61.982 | 555 | 179 | 10 | 198 | 746 | 2 | 530 | 0.0 | 633 |
| MS.gene46428.t1 | MTR_3g107090 | 50.962 | 312 | 114 | 5 | 419 | 728 | 323 | 597 | 2.35e-93 | 304 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46428.t1 | AT3G11760 | 58.488 | 754 | 228 | 18 | 1 | 729 | 1 | 694 | 0.0 | 800 |
| MS.gene46428.t1 | AT5G04860 | 46.144 | 804 | 329 | 21 | 1 | 749 | 1 | 755 | 0.0 | 610 |
| MS.gene46428.t1 | AT5G04860 | 47.531 | 648 | 261 | 17 | 137 | 749 | 1 | 604 | 1.50e-172 | 510 |
| MS.gene46428.t1 | AT2G10560 | 47.970 | 271 | 107 | 6 | 493 | 749 | 1 | 251 | 4.11e-76 | 247 |
| MS.gene46428.t1 | AT2G25460 | 43.396 | 318 | 124 | 4 | 419 | 734 | 282 | 545 | 4.59e-75 | 253 |
| MS.gene46428.t1 | AT2G25460 | 52.448 | 143 | 62 | 2 | 419 | 560 | 282 | 419 | 3.12e-33 | 133 |
Find 182 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATCAAACTGGGACTTTA+TGG | 0.102736 | 1.2:-44282040 | None:intergenic |
| AAGAATCGGCTTCAACTTTA+AGG | 0.138463 | 1.2:-44282374 | None:intergenic |
| AAGGGCTCTCCTTTAGATTT+AGG | 0.181325 | 1.2:-44281161 | None:intergenic |
| GTTCCTGAAAAGTCCTTTAT+AGG | 0.194840 | 1.2:+44282189 | MS.gene46428:CDS |
| GTTACTTGTGGAGTCCTTTC+CGG | 0.255066 | 1.2:-44282304 | None:intergenic |
| CTTCCCTCATCCATTCCTTC+TGG | 0.274855 | 1.2:-44282222 | None:intergenic |
| TCTGCTTGTAATTCTCTAAT+AGG | 0.276013 | 1.2:-44282717 | None:intergenic |
| ACTTCGAATTTACGGGAAAT+TGG | 0.280810 | 1.2:-44279391 | None:intergenic |
| ACCACAGGAATCTTGTTCTT+TGG | 0.283276 | 1.2:-44279790 | None:intergenic |
| TCTGATGAATCTATTTCATT+TGG | 0.287396 | 1.2:+44281248 | MS.gene46428:CDS |
| CCATGTCTTTCGATAACATT+TGG | 0.288111 | 1.2:+44282265 | MS.gene46428:CDS |
| CTGATGAATCTATTTCATTT+GGG | 0.291378 | 1.2:+44281249 | MS.gene46428:CDS |
| CGAACATCGGTATCTGAGTT+TGG | 0.292405 | 1.2:+44281826 | MS.gene46428:CDS |
| GCATTAGGTCGCGGTTGTTT+TGG | 0.300495 | 1.2:-44282017 | None:intergenic |
| TTTGATGTAGGGTTTGAATC+AGG | 0.313538 | 1.2:+44279765 | MS.gene46428:intron |
| AGCATTCCACTTACAATTCC+TGG | 0.318693 | 1.2:+44279877 | MS.gene46428:CDS |
| CCACTATCAAAGCTGGTCTT+AGG | 0.321310 | 1.2:+44280709 | MS.gene46428:CDS |
| GAAACAATAGAATCCTCTTT+TGG | 0.324321 | 1.2:-44281059 | None:intergenic |
| CTTTCTCTGACTCTCCTGAT+TGG | 0.326671 | 1.2:-44280677 | None:intergenic |
| TGATCTAGAAACAGTTGTTC+AGG | 0.341468 | 1.2:+44282143 | MS.gene46428:CDS |
| ATCGTTCAGCTACGGGAAAC+TGG | 0.345865 | 1.2:+44280932 | MS.gene46428:CDS |
| CATAAAGCTGAGGACGATTC+AGG | 0.349125 | 1.2:+44281796 | MS.gene46428:CDS |
| GAAGTTTGACTTCGAATTTA+CGG | 0.350744 | 1.2:-44279399 | None:intergenic |
| CTCGAATTAAGCTATCAAAC+TGG | 0.359785 | 1.2:-44282050 | None:intergenic |
| GAACATCGGTATCTGAGTTT+GGG | 0.366778 | 1.2:+44281827 | MS.gene46428:CDS |
| TACTGCATCATTGACACTCT+TGG | 0.376702 | 1.2:+44282396 | MS.gene46428:CDS |
| TGACTCTCCTGATTGGTTCA+AGG | 0.386234 | 1.2:-44280670 | None:intergenic |
| GAAGGGTGATGACGAGGATT+GGG | 0.388790 | 1.2:+44280998 | MS.gene46428:CDS |
| CAACTTTAAGGATGAAGAAA+TGG | 0.389682 | 1.2:-44282362 | None:intergenic |
| ACTGGGACTTTATGGGCATT+AGG | 0.391468 | 1.2:-44282032 | None:intergenic |
| CTATCAAACTGGGACTTTAT+GGG | 0.392417 | 1.2:-44282039 | None:intergenic |
| AAGATTCCTGTGGTTGGAAC+AGG | 0.393992 | 1.2:+44279799 | MS.gene46428:CDS |
| TCTAGATCAAAATGTTTGTC+GGG | 0.400167 | 1.2:-44282129 | None:intergenic |
| CTTGAACTTTGCGCTACATA+AGG | 0.400579 | 1.2:-44281092 | None:intergenic |
| TTGTTGCTGTAATTGCTGAT+TGG | 0.402500 | 1.2:+44281992 | MS.gene46428:CDS |
| AAGTTTGACTTCGAATTTAC+GGG | 0.405395 | 1.2:-44279398 | None:intergenic |
| CATGTCTTTCGATAACATTT+GGG | 0.410509 | 1.2:+44282266 | MS.gene46428:CDS |
| TGGATGAAAGAAACCTATAA+AGG | 0.410749 | 1.2:-44282202 | None:intergenic |
| TGAAGGGTGATGACGAGGAT+TGG | 0.414690 | 1.2:+44280997 | MS.gene46428:CDS |
| CAGCGCAGTGAACGTGCAGC+AGG | 0.419816 | 1.2:+44281949 | MS.gene46428:CDS |
| CGTTGGAAGTTTGCCAAAAG+AGG | 0.420162 | 1.2:+44281046 | MS.gene46428:CDS |
| CCTAAGACCAGCTTTGATAG+TGG | 0.423378 | 1.2:-44280709 | None:intergenic |
| CAACTTTGCGGTGGGCAGTT+GGG | 0.429654 | 1.2:+44281855 | MS.gene46428:CDS |
| TTCTAGATCAAAATGTTTGT+CGG | 0.433819 | 1.2:-44282130 | None:intergenic |
| GCAGATATCAATCAGCTTAG+TGG | 0.435759 | 1.2:+44280584 | MS.gene46428:intron |
| CATTCGCCGTTGAAATTCGT+TGG | 0.436958 | 1.2:+44279467 | MS.gene46428:CDS |
| TATGTGAAAACCAGACATAT+AGG | 0.438554 | 1.2:+44282097 | MS.gene46428:CDS |
| CGAATTTACGGGAAATTGGT+GGG | 0.441264 | 1.2:-44279387 | None:intergenic |
| TGGTTCAAGGGTGATGCAAC+AGG | 0.445371 | 1.2:-44280657 | None:intergenic |
| CAAGACGCAGCTTATTGCCT+TGG | 0.445383 | 1.2:+44281111 | MS.gene46428:CDS |
| ATGTGAAAACCAGACATATA+GGG | 0.445666 | 1.2:+44282098 | MS.gene46428:CDS |
| TACTGGTGAGGCTCATCCTA+AGG | 0.445670 | 1.2:+44279546 | MS.gene46428:CDS |
| TCAAGAGAGTCAGAGTCAAA+AGG | 0.446923 | 1.2:-44280849 | None:intergenic |
| CCCTTGTTGAAGAAGGCATA+TGG | 0.450589 | 1.2:+44281179 | MS.gene46428:CDS |
| TTGGAGTCTGGTGCTGAGAC+AGG | 0.452085 | 1.2:+44282600 | MS.gene46428:CDS |
| AATGATAAGGAGTTGGAGTC+TGG | 0.455949 | 1.2:+44282588 | MS.gene46428:CDS |
| GCATCACCCTTGAACCAATC+AGG | 0.458879 | 1.2:+44280663 | MS.gene46428:CDS |
| TTCAGATCTCCTAAATCTAA+AGG | 0.460780 | 1.2:+44281152 | MS.gene46428:CDS |
| GACTCTCCTGATTGGTTCAA+GGG | 0.464260 | 1.2:-44280669 | None:intergenic |
| CAAGAGAGTCAGAGTCAAAA+GGG | 0.467406 | 1.2:-44280848 | None:intergenic |
| CTTCCCTCTTCCTCACGGCT+CGG | 0.468647 | 1.2:-44280780 | None:intergenic |
| TGCGGAAATCGTTCAGCTAC+GGG | 0.469599 | 1.2:+44280925 | MS.gene46428:CDS |
| GACGCAGCTTATTGCCTTGG+AGG | 0.472267 | 1.2:+44281114 | MS.gene46428:CDS |
| CCATATGCCTTCTTCAACAA+GGG | 0.473088 | 1.2:-44281179 | None:intergenic |
| GAAACCGAGCCGTGAGGAAG+AGG | 0.479734 | 1.2:+44280776 | MS.gene46428:CDS |
| ACAACTTTGCGGTGGGCAGT+TGG | 0.479833 | 1.2:+44281854 | MS.gene46428:CDS |
| GTCAATGATGCAGTAAGAAT+CGG | 0.484330 | 1.2:-44282388 | None:intergenic |
| TTTCTTTCATCCAGAAGGAA+TGG | 0.487919 | 1.2:+44282212 | MS.gene46428:CDS |
| AAGAAGGCATATGGAGAAGA+AGG | 0.488958 | 1.2:+44281188 | MS.gene46428:CDS |
| GTTTGGGGACGACAACTTTG+CGG | 0.490682 | 1.2:+44281843 | MS.gene46428:CDS |
| TCTGACGATTGAGTGGCATC+TGG | 0.491709 | 1.2:-44282492 | None:intergenic |
| GGAATCGCTCCCTATATGTC+TGG | 0.491997 | 1.2:-44282107 | None:intergenic |
| TTGTATCAACAAGGAAATCA+AGG | 0.502701 | 1.2:+44280754 | MS.gene46428:CDS |
| CCTCACTTCCCTCTTCCTCA+CGG | 0.504065 | 1.2:-44280785 | None:intergenic |
| TCGAATTTACGGGAAATTGG+TGG | 0.505563 | 1.2:-44279388 | None:intergenic |
| CTTCTCATCAAAACTCTCTC+CGG | 0.505930 | 1.2:+44279418 | MS.gene46428:CDS |
| TTGATGTAGGGTTTGAATCA+GGG | 0.507143 | 1.2:+44279766 | MS.gene46428:intron |
| CTTTCTGCTAATAAAGACAA+TGG | 0.509740 | 1.2:+44279622 | MS.gene46428:CDS |
| GCCGTTGAAATTCGTTGGAA+AGG | 0.514785 | 1.2:+44279472 | MS.gene46428:CDS |
| GCAAATCAATGATAAGGAGT+TGG | 0.514949 | 1.2:+44282581 | MS.gene46428:CDS |
| TGCAACGGTTTGTTGTTCAC+CGG | 0.516703 | 1.2:-44282526 | None:intergenic |
| AAACTGGCCTTTGCAAATGC+TGG | 0.517864 | 1.2:+44280948 | MS.gene46428:CDS |
| TTCTCATTCAGAAGAGGTAA+AGG | 0.517877 | 1.2:+44280890 | MS.gene46428:CDS |
| TTACAAGCAGATGTGAAGAA+AGG | 0.518971 | 1.2:+44282729 | MS.gene46428:CDS |
| TTGCTCTTAGTTCGCTTCGT+CGG | 0.521079 | 1.2:+44279503 | MS.gene46428:CDS |
| TGCATCTGTTGTTGATCAGA+AGG | 0.522342 | 1.2:+44279843 | MS.gene46428:CDS |
| GGTTCAGCAAATCAATGATA+AGG | 0.524830 | 1.2:+44282575 | MS.gene46428:CDS |
| ATAGGTTTCTTTCATCCAGA+AGG | 0.525209 | 1.2:+44282207 | MS.gene46428:CDS |
| AAACCGAGCCGTGAGGAAGA+GGG | 0.527016 | 1.2:+44280777 | MS.gene46428:CDS |
| AGATGATGAAATGGCGTCCA+TGG | 0.533719 | 1.2:+44279362 | MS.gene46428:CDS |
| TGATGAATCTATTTCATTTG+GGG | 0.533930 | 1.2:+44281250 | MS.gene46428:CDS |
| CCGTGAGGAAGAGGGAAGTG+AGG | 0.535601 | 1.2:+44280785 | MS.gene46428:CDS |
| AGGAGAGCCCTTGTTGAAGA+AGG | 0.536446 | 1.2:+44281172 | MS.gene46428:CDS |
| ACCTTTCCAACGAATTTCAA+CGG | 0.536856 | 1.2:-44279473 | None:intergenic |
| GTCTTGTGATGTTGTTCCTG+TGG | 0.538631 | 1.2:+44282818 | MS.gene46428:CDS |
| GTGAGGGAAATTACTCTGGC+AGG | 0.538852 | 1.2:+44280802 | MS.gene46428:CDS |
| TTCACTGCGCTGATCAATTG+AGG | 0.539569 | 1.2:-44281938 | None:intergenic |
| TGATGTAGGGTTTGAATCAG+GGG | 0.540495 | 1.2:+44279767 | MS.gene46428:intron |
| TTTGATAGCTTAATTCGAGA+TGG | 0.542877 | 1.2:+44282054 | MS.gene46428:CDS |
| CCGAGGTTCATCGTTACTTG+TGG | 0.543988 | 1.2:-44282316 | None:intergenic |
| AAGAACAAGATTCCTGTGGT+TGG | 0.544870 | 1.2:+44279793 | MS.gene46428:CDS |
| TCGTCAGACGAAAACACAAC+CGG | 0.545059 | 1.2:+44282507 | MS.gene46428:CDS |
| TCCATATGCCTTCTTCAACA+AGG | 0.550604 | 1.2:-44281180 | None:intergenic |
| TTCGAGATGGCTCATTAGAG+TGG | 0.552263 | 1.2:+44282067 | MS.gene46428:CDS |
| GCGCAGTGAACGTGCAGCAG+GGG | 0.555807 | 1.2:+44281951 | MS.gene46428:CDS |
| GCATATATCTTGAAATTCGA+TGG | 0.555896 | 1.2:+44282447 | MS.gene46428:CDS |
| TGGGATGAGATTAGTAATGC+CGG | 0.556246 | 1.2:+44282285 | MS.gene46428:CDS |
| TACTCTGGCAGGAGTGAGGA+TGG | 0.557847 | 1.2:+44280813 | MS.gene46428:CDS |
| TGGTTGTTAAGATGATGAAA+TGG | 0.558322 | 1.2:+44279353 | MS.gene46428:CDS |
| GTGCGGAAATCGTTCAGCTA+CGG | 0.560018 | 1.2:+44280924 | MS.gene46428:CDS |
| TCATCCAGAAGGAATGGATG+AGG | 0.560528 | 1.2:+44282218 | MS.gene46428:CDS |
| GGAAGTGAGGGAAATTACTC+TGG | 0.560922 | 1.2:+44280798 | MS.gene46428:CDS |
| GCTGAACGATTTCCGCACAC+TGG | 0.561277 | 1.2:-44280919 | None:intergenic |
| ACTTTATGGGCATTAGGTCG+CGG | 0.562038 | 1.2:-44282026 | None:intergenic |
| CTCAACTTTCTCTTCCTCCA+AGG | 0.562179 | 1.2:-44281128 | None:intergenic |
| GCTCAAGAGAATAGTGAGCT+TGG | 0.562928 | 1.2:+44280618 | MS.gene46428:CDS |
| AGCGAACTAAGAGCAAGTTT+AGG | 0.563370 | 1.2:-44279496 | None:intergenic |
| GAATTTACGGGAAATTGGTG+GGG | 0.563517 | 1.2:-44279386 | None:intergenic |
| CTGGCCTTTGCAAATGCTGG+TGG | 0.563905 | 1.2:+44280951 | MS.gene46428:CDS |
| GAACCACCAGGAATTGTAAG+TGG | 0.564705 | 1.2:-44279883 | None:intergenic |
| ACTGGTGAGGCTCATCCTAA+GGG | 0.565613 | 1.2:+44279547 | MS.gene46428:CDS |
| ATTTGTAGTCTATGATGAAG+TGG | 0.567209 | 1.2:-44282768 | None:intergenic |
| AATTTACGGGAAATTGGTGG+GGG | 0.568449 | 1.2:-44279385 | None:intergenic |
| GAAGTTTCATGTGGCCATCA+CGG | 0.569157 | 1.2:-44281897 | None:intergenic |
| TCAACGGCGAATGTATTCTC+CGG | 0.570730 | 1.2:-44279457 | None:intergenic |
| GAGGTTTCCACTATCAAAGC+TGG | 0.575099 | 1.2:+44280702 | MS.gene46428:CDS |
| ACAGATGCTTCTTCAGCCAC+AGG | 0.578140 | 1.2:-44282834 | None:intergenic |
| AAGGCATATGGAGAAGAAGG+TGG | 0.578876 | 1.2:+44281191 | MS.gene46428:CDS |
| CGGCGAGAGATCGAGTCCAC+CGG | 0.579821 | 1.2:-44279437 | None:intergenic |
| CGTGAGGAAGAGGGAAGTGA+GGG | 0.581230 | 1.2:+44280786 | MS.gene46428:CDS |
| AAAGAAGTAATGAGCCGTGA+TGG | 0.583057 | 1.2:+44281883 | MS.gene46428:CDS |
| CTATTCGAGCATGAGAGTGA+AGG | 0.585649 | 1.2:+44280980 | MS.gene46428:CDS |
| GGGGACGACAACTTTGCGGT+GGG | 0.588721 | 1.2:+44281847 | MS.gene46428:CDS |
| AATGAACCTGTTCCAACCAC+AGG | 0.591199 | 1.2:-44279805 | None:intergenic |
| GGGTCAACAGCAGAACCACC+AGG | 0.591552 | 1.2:-44279895 | None:intergenic |
| CGGTGGACTCGATCTCTCGC+CGG | 0.591598 | 1.2:+44279438 | MS.gene46428:CDS |
| TGAGATTAGTAATGCCGGAA+AGG | 0.595760 | 1.2:+44282290 | MS.gene46428:CDS |
| ATGTATTAGAGTACAATGAC+AGG | 0.595845 | 1.2:+44282550 | MS.gene46428:CDS |
| AGCGCAGTGAACGTGCAGCA+GGG | 0.596611 | 1.2:+44281950 | MS.gene46428:CDS |
| TCGAATTAAGCTATCAAACT+GGG | 0.597882 | 1.2:-44282049 | None:intergenic |
| GTACTCTAATACATCTGCAA+CGG | 0.605082 | 1.2:-44282541 | None:intergenic |
| ATTAGAGTACAATGACAGGC+AGG | 0.605990 | 1.2:+44282554 | MS.gene46428:CDS |
| TATTCGAGCATGAGAGTGAA+GGG | 0.606142 | 1.2:+44280981 | MS.gene46428:CDS |
| TCAGTCGAAAAGTGAGCGTG+AGG | 0.606612 | 1.2:+44282626 | MS.gene46428:CDS |
| TGGGGACGACAACTTTGCGG+TGG | 0.607170 | 1.2:+44281846 | MS.gene46428:CDS |
| CAGCTTAGTGGAGCTAAGAG+TGG | 0.608548 | 1.2:+44280596 | MS.gene46428:CDS |
| AACATCGGTATCTGAGTTTG+GGG | 0.609041 | 1.2:+44281828 | MS.gene46428:CDS |
| ATTCATCAGAGCTAAGCTGC+CGG | 0.610097 | 1.2:-44281235 | None:intergenic |
| TTTCATCATCTTAACAACCA+TGG | 0.613076 | 1.2:-44279350 | None:intergenic |
| CTAGATCAAAATGTTTGTCG+GGG | 0.614137 | 1.2:-44282128 | None:intergenic |
| CTTGAAATTCGATGGCAACA+CGG | 0.615137 | 1.2:+44282455 | MS.gene46428:CDS |
| AAATTACTCTGGCAGGAGTG+AGG | 0.615141 | 1.2:+44280809 | MS.gene46428:CDS |
| TGACTGAGTTTGTATCAACA+AGG | 0.618765 | 1.2:+44280745 | MS.gene46428:CDS |
| TCATTGACACTCTTGGAGAG+AGG | 0.619433 | 1.2:+44282403 | MS.gene46428:CDS |
| ACGGTGAAAGCGATCTCCCA+AGG | 0.619674 | 1.2:-44279652 | None:intergenic |
| CAGAAGGAATGGATGAGGGA+AGG | 0.626120 | 1.2:+44282223 | MS.gene46428:CDS |
| TCATTCAGAAGAGGTAAAGG+AGG | 0.629440 | 1.2:+44280893 | MS.gene46428:CDS |
| CATCCAGAAGGAATGGATGA+GGG | 0.630978 | 1.2:+44282219 | MS.gene46428:CDS |
| GAGAGTGAAGGGTGATGACG+AGG | 0.633012 | 1.2:+44280992 | MS.gene46428:CDS |
| CATACAGTGAGTGAAAGAGA+AGG | 0.634779 | 1.2:-44279916 | None:intergenic |
| AGGGGATTCTCATTCAGAAG+AGG | 0.637034 | 1.2:+44280884 | MS.gene46428:CDS |
| ATACAGTGAGTGAAAGAGAA+GGG | 0.637371 | 1.2:-44279915 | None:intergenic |
| CTCATCAAAACTCTCTCCGG+TGG | 0.638713 | 1.2:+44279421 | MS.gene46428:CDS |
| CCAAATGTTATCGAAAGACA+TGG | 0.641206 | 1.2:-44282265 | None:intergenic |
| AAGTGAGCGTGAGGAAGACG+AGG | 0.642594 | 1.2:+44282635 | MS.gene46428:CDS |
| AGTAATCACAAATCAGACGT+TGG | 0.645175 | 1.2:+44281029 | MS.gene46428:CDS |
| TGATCCACCAGCATTTGCAA+AGG | 0.646546 | 1.2:-44280955 | None:intergenic |
| CAGAGGGAAAGAATCATGCA+AGG | 0.651300 | 1.2:+44282665 | MS.gene46428:CDS |
| AGCATCTGTCACAGTAACTG+AGG | 0.656388 | 1.2:+44282848 | MS.gene46428:CDS |
| TAGTTCGCTTCGTCGGAACG+CGG | 0.657900 | 1.2:+44279510 | MS.gene46428:CDS |
| TTTCAGGAACAACGGAAAGG+GGG | 0.661017 | 1.2:-44282176 | None:intergenic |
| ATTCCACTTACAATTCCTGG+TGG | 0.678173 | 1.2:+44279880 | MS.gene46428:CDS |
| CTTGGAGAGAGGCTTTACGA+AGG | 0.681723 | 1.2:+44282414 | MS.gene46428:CDS |
| TTGCGCTACATAAGGCTCAG+AGG | 0.682948 | 1.2:-44281084 | None:intergenic |
| TTCAGGTGCAAATCGAACAT+CGG | 0.687805 | 1.2:+44281813 | MS.gene46428:CDS |
| CCACAAGTAACGATGAACCT+CGG | 0.694167 | 1.2:+44282316 | MS.gene46428:CDS |
| GCCAAAGAACAAGATTCCTG+TGG | 0.698542 | 1.2:+44279789 | MS.gene46428:CDS |
| TAAAGGAGGATTCCAGTGTG+CGG | 0.701947 | 1.2:+44280907 | MS.gene46428:CDS |
| ATGACAGTCACATAAAGCTG+AGG | 0.711509 | 1.2:+44281786 | MS.gene46428:intron |
| AGGAGAGTCAGAGAAAGACG+AGG | 0.713897 | 1.2:+44280683 | MS.gene46428:CDS |
| ATCAAGGAAACCGAGCCGTG+AGG | 0.718483 | 1.2:+44280770 | MS.gene46428:CDS |
| CTTGTGTCTGAAGTTTCATG+TGG | 0.718633 | 1.2:-44281906 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATCCTTATTATTTTT+GGG | - | chr1.2:44280218-44280237 | None:intergenic | 10.0% |
| !!! | TATAAAATCCTTATTATTTT+TGG | - | chr1.2:44280219-44280238 | None:intergenic | 10.0% |
| !! | AAAAATTGATGAGATAAAAA+AGG | - | chr1.2:44279984-44280003 | None:intergenic | 15.0% |
| !! | AAGAAGTTTCAAAAAAGATT+AGG | - | chr1.2:44281713-44281732 | None:intergenic | 20.0% |
| !! | AATAAGTCAAAAAGAAATTG+TGG | - | chr1.2:44279957-44279976 | None:intergenic | 20.0% |
| !! | ACAATGAAATTGAACAAAAA+GGG | - | chr1.2:44279699-44279718 | None:intergenic | 20.0% |
| !! | TAAGAAAAATACGTTGAAAA+CGG | - | chr1.2:44279674-44279693 | None:intergenic | 20.0% |
| !! | TACAATGAAATTGAACAAAA+AGG | - | chr1.2:44279700-44279719 | None:intergenic | 20.0% |
| !! | TCTACTTGAAATTTAGATAT+TGG | - | chr1.2:44280416-44280435 | None:intergenic | 20.0% |
| !! | TCTATTCAATTAAGATGTTT+GGG | - | chr1.2:44280177-44280196 | None:intergenic | 20.0% |
| !!! | AATCTTTTTTGAAACTTCTT+TGG | + | chr1.2:44281713-44281732 | MS.gene46428:intron | 20.0% |
| !!! | AATGAATTTTCATATACTTC+AGG | - | chr1.2:44280146-44280165 | None:intergenic | 20.0% |
| !!! | ATAAGTATTGTATATGATAC+TGG | + | chr1.2:44280109-44280128 | MS.gene46428:intron | 20.0% |
| !!! | ATGAATTTTCATATACTTCA+GGG | - | chr1.2:44280145-44280164 | None:intergenic | 20.0% |
| !!! | CACTTTTACAAAATCAATTT+TGG | - | chr1.2:44280311-44280330 | None:intergenic | 20.0% |
| ! | AAGTTTCAAAAAAGATTAGG+AGG | - | chr1.2:44281710-44281729 | None:intergenic | 25.0% |
| ! | ATTTAGATAAACTTGTCAAG+AGG | - | chr1.2:44281674-44281693 | None:intergenic | 25.0% |
| ! | CTGATGAATCTATTTCATTT+GGG | + | chr1.2:44281249-44281268 | MS.gene46428:CDS | 25.0% |
| ! | GAATAGTCCCAAAAATAATA+AGG | + | chr1.2:44280208-44280227 | MS.gene46428:intron | 25.0% |
| ! | GAGAAAATTGGTATACTTTA+TGG | - | chr1.2:44280056-44280075 | None:intergenic | 25.0% |
| ! | GATTAAATTCGAGAGAAAAT+TGG | - | chr1.2:44280068-44280087 | None:intergenic | 25.0% |
| ! | GTCTATTCAATTAAGATGTT+TGG | - | chr1.2:44280178-44280197 | None:intergenic | 25.0% |
| ! | TATCCTTAAAATTCATCTCA+AGG | + | chr1.2:44281343-44281362 | MS.gene46428:intron | 25.0% |
| ! | TCTGATGAATCTATTTCATT+TGG | + | chr1.2:44281248-44281267 | MS.gene46428:CDS | 25.0% |
| ! | TGATAAGCTAATTAACAACA+GGG | - | chr1.2:44281746-44281765 | None:intergenic | 25.0% |
| ! | TGATGAATCTATTTCATTTG+GGG | + | chr1.2:44281250-44281269 | MS.gene46428:CDS | 25.0% |
| ! | TGTTCAATTTCATTGTACAA+TGG | + | chr1.2:44279703-44279722 | MS.gene46428:intron | 25.0% |
| ! | TTCTAGATCAAAATGTTTGT+CGG | - | chr1.2:44282133-44282152 | None:intergenic | 25.0% |
| !! | TACTTTATGGACTAAATTGA+TGG | - | chr1.2:44280043-44280062 | None:intergenic | 25.0% |
| !!! | AAATTTGGGATTTTTGATGT+AGG | + | chr1.2:44279753-44279772 | MS.gene46428:intron | 25.0% |
| !!! | AATTTGGGATTTTTGATGTA+GGG | + | chr1.2:44279754-44279773 | MS.gene46428:intron | 25.0% |
| !!! | GTTCAATTGAAATTTGTTGT+TGG | + | chr1.2:44280012-44280031 | MS.gene46428:intron | 25.0% |
| !!! | TACAAAATCAATTTTGGTCA+AGG | - | chr1.2:44280305-44280324 | None:intergenic | 25.0% |
| ACTTAATGTATGAACTCTTC+TGG | - | chr1.2:44281485-44281504 | None:intergenic | 30.0% | |
| AGAATTGATTGTGACATGTT+TGG | - | chr1.2:44280478-44280497 | None:intergenic | 30.0% | |
| ATGTATTAGAGTACAATGAC+AGG | + | chr1.2:44282550-44282569 | MS.gene46428:CDS | 30.0% | |
| ATGTGAAAACCAGACATATA+GGG | + | chr1.2:44282098-44282117 | MS.gene46428:CDS | 30.0% | |
| ATTTGTAGTCTATGATGAAG+TGG | - | chr1.2:44282771-44282790 | None:intergenic | 30.0% | |
| CAACTGATAATAAAAATCCG+AGG | - | chr1.2:44282336-44282355 | None:intergenic | 30.0% | |
| CATGTCTTTCGATAACATTT+GGG | + | chr1.2:44282266-44282285 | MS.gene46428:CDS | 30.0% | |
| CTGATAAGCTAATTAACAAC+AGG | - | chr1.2:44281747-44281766 | None:intergenic | 30.0% | |
| CTTAATGTATGAACTCTTCT+GGG | - | chr1.2:44281484-44281503 | None:intergenic | 30.0% | |
| CTTTCTGCTAATAAAGACAA+TGG | + | chr1.2:44279622-44279641 | MS.gene46428:CDS | 30.0% | |
| GATGACGAAAAACAATGAAA+AGG | - | chr1.2:44281288-44281307 | None:intergenic | 30.0% | |
| GCATATATCTTGAAATTCGA+TGG | + | chr1.2:44282447-44282466 | MS.gene46428:CDS | 30.0% | |
| GTTTATGGCACAAGAAAATA+GGG | + | chr1.2:44281313-44281332 | MS.gene46428:intron | 30.0% | |
| TATGTGAAAACCAGACATAT+AGG | + | chr1.2:44282097-44282116 | MS.gene46428:CDS | 30.0% | |
| TATTTAGATCATTCCCATTG+AGG | - | chr1.2:44281635-44281654 | None:intergenic | 30.0% | |
| TCGAATTAAGCTATCAAACT+GGG | - | chr1.2:44282052-44282071 | None:intergenic | 30.0% | |
| TCTAGATCAAAATGTTTGTC+GGG | - | chr1.2:44282132-44282151 | None:intergenic | 30.0% | |
| TCTGCTTGTAATTCTCTAAT+AGG | - | chr1.2:44282720-44282739 | None:intergenic | 30.0% | |
| TGGATGAAAGAAACCTATAA+AGG | - | chr1.2:44282205-44282224 | None:intergenic | 30.0% | |
| TGGTTGTTAAGATGATGAAA+TGG | + | chr1.2:44279353-44279372 | MS.gene46428:CDS | 30.0% | |
| TGTTTATGGCACAAGAAAAT+AGG | + | chr1.2:44281312-44281331 | MS.gene46428:intron | 30.0% | |
| TTAAGGACTAAGCATATGTT+TGG | + | chr1.2:44280274-44280293 | MS.gene46428:intron | 30.0% | |
| TTAATGTATGAACTCTTCTG+GGG | - | chr1.2:44281483-44281502 | None:intergenic | 30.0% | |
| TTCAGATCTCCTAAATCTAA+AGG | + | chr1.2:44281152-44281171 | MS.gene46428:CDS | 30.0% | |
| TTGTATCAACAAGGAAATCA+AGG | + | chr1.2:44280754-44280773 | MS.gene46428:CDS | 30.0% | |
| TTTCGTCATCTACATGTTTA+TGG | + | chr1.2:44281298-44281317 | MS.gene46428:intron | 30.0% | |
| ! | AAACCTATAAAGGACTTTTC+AGG | - | chr1.2:44282195-44282214 | None:intergenic | 30.0% |
| ! | AAGTTTGACTTCGAATTTAC+GGG | - | chr1.2:44279401-44279420 | None:intergenic | 30.0% |
| ! | ATTTCAAGTAGAATCAGTTC+TGG | + | chr1.2:44280424-44280443 | MS.gene46428:intron | 30.0% |
| ! | CAACTTTAAGGATGAAGAAA+TGG | - | chr1.2:44282365-44282384 | None:intergenic | 30.0% |
| ! | CTCGGATTTTTATTATCAGT+TGG | + | chr1.2:44282334-44282353 | MS.gene46428:CDS | 30.0% |
| ! | GAAACAATAGAATCCTCTTT+TGG | - | chr1.2:44281062-44281081 | None:intergenic | 30.0% |
| ! | GAAGTTTGACTTCGAATTTA+CGG | - | chr1.2:44279402-44279421 | None:intergenic | 30.0% |
| ! | TGACCTTGAGATGAATTTTA+AGG | - | chr1.2:44281349-44281368 | None:intergenic | 30.0% |
| ! | TTTGATAGCTTAATTCGAGA+TGG | + | chr1.2:44282054-44282073 | MS.gene46428:CDS | 30.0% |
| !! | TTCTACATCTCTAGAATCAA+TGG | + | chr1.2:44280494-44280513 | MS.gene46428:intron | 30.0% |
| !!! | ATGATATTGATTTTGATCGC+CGG | + | chr1.2:44281216-44281235 | MS.gene46428:CDS | 30.0% |
| AAGGGACATCTTGAACTTAA+CGG | - | chr1.2:44281589-44281608 | None:intergenic | 35.0% | |
| ACCTTTCCAACGAATTTCAA+CGG | - | chr1.2:44279476-44279495 | None:intergenic | 35.0% | |
| ACTTCGAATTTACGGGAAAT+TGG | - | chr1.2:44279394-44279413 | None:intergenic | 35.0% | |
| AGTAATCACAAATCAGACGT+TGG | + | chr1.2:44281029-44281048 | MS.gene46428:CDS | 35.0% | |
| AGTACAAAGGCTTCTTAGAT+TGG | + | chr1.2:44281527-44281546 | MS.gene46428:intron | 35.0% | |
| ATACAGTGAGTGAAAGAGAA+GGG | - | chr1.2:44279918-44279937 | None:intergenic | 35.0% | |
| ATAGGTTTCTTTCATCCAGA+AGG | + | chr1.2:44282207-44282226 | MS.gene46428:CDS | 35.0% | |
| ATTGGACTCTAAACACGAAT+TGG | - | chr1.2:44281460-44281479 | None:intergenic | 35.0% | |
| CCAAATGTTATCGAAAGACA+TGG | - | chr1.2:44282268-44282287 | None:intergenic | 35.0% | |
| CCATGTCTTTCGATAACATT+TGG | + | chr1.2:44282265-44282284 | MS.gene46428:CDS | 35.0% | |
| CTAGATCAAAATGTTTGTCG+GGG | - | chr1.2:44282131-44282150 | None:intergenic | 35.0% | |
| CTATCAAACTGGGACTTTAT+GGG | - | chr1.2:44282042-44282061 | None:intergenic | 35.0% | |
| CTCGAATTAAGCTATCAAAC+TGG | - | chr1.2:44282053-44282072 | None:intergenic | 35.0% | |
| GAATATGTGCATGAGTACAA+AGG | + | chr1.2:44281514-44281533 | MS.gene46428:intron | 35.0% | |
| GCAAATCAATGATAAGGAGT+TGG | + | chr1.2:44282581-44282600 | MS.gene46428:CDS | 35.0% | |
| GGTTCAGCAAATCAATGATA+AGG | + | chr1.2:44282575-44282594 | MS.gene46428:CDS | 35.0% | |
| GTACAAAGGCTTCTTAGATT+GGG | + | chr1.2:44281528-44281547 | MS.gene46428:intron | 35.0% | |
| GTACTCTAATACATCTGCAA+CGG | - | chr1.2:44282544-44282563 | None:intergenic | 35.0% | |
| GTCAATGATGCAGTAAGAAT+CGG | - | chr1.2:44282391-44282410 | None:intergenic | 35.0% | |
| GTTCCTGAAAAGTCCTTTAT+AGG | + | chr1.2:44282189-44282208 | MS.gene46428:CDS | 35.0% | |
| TGACTGAGTTTGTATCAACA+AGG | + | chr1.2:44280745-44280764 | MS.gene46428:CDS | 35.0% | |
| TGATCTAGAAACAGTTGTTC+AGG | + | chr1.2:44282143-44282162 | MS.gene46428:CDS | 35.0% | |
| TGCTGAAAGAGAAGTAGAAA+GGG | - | chr1.2:44281607-44281626 | None:intergenic | 35.0% | |
| TTACAAGCAGATGTGAAGAA+AGG | + | chr1.2:44282729-44282748 | MS.gene46428:CDS | 35.0% | |
| TTCTCATTCAGAAGAGGTAA+AGG | + | chr1.2:44280890-44280909 | MS.gene46428:CDS | 35.0% | |
| TTGATGTAGGGTTTGAATCA+GGG | + | chr1.2:44279766-44279785 | MS.gene46428:intron | 35.0% | |
| TTGCTGAAAGAGAAGTAGAA+AGG | - | chr1.2:44281608-44281627 | None:intergenic | 35.0% | |
| TTGTTGCTGTAATTGCTGAT+TGG | + | chr1.2:44281992-44282011 | MS.gene46428:CDS | 35.0% | |
| TTTCTTTCATCCAGAAGGAA+TGG | + | chr1.2:44282212-44282231 | MS.gene46428:CDS | 35.0% | |
| TTTGATGTAGGGTTTGAATC+AGG | + | chr1.2:44279765-44279784 | MS.gene46428:intron | 35.0% | |
| ! | AAGAATCGGCTTCAACTTTA+AGG | - | chr1.2:44282377-44282396 | None:intergenic | 35.0% |
| ! | AAGACAATGGTTTTCATCCT+TGG | + | chr1.2:44279635-44279654 | MS.gene46428:CDS | 35.0% |
| ! | AGACAATGGTTTTCATCCTT+GGG | + | chr1.2:44279636-44279655 | MS.gene46428:CDS | 35.0% |
| ! | TGTGAGAAATTTTACTGGTG+AGG | + | chr1.2:44279534-44279553 | MS.gene46428:CDS | 35.0% |
| !! | AAAGGACTTTTCAGGAACAA+CGG | - | chr1.2:44282187-44282206 | None:intergenic | 35.0% |
| !! | AACTTGTCAAGAGGTATCAA+TGG | - | chr1.2:44281665-44281684 | None:intergenic | 35.0% |
| !! | ACATCTCTAGAATCAATGGA+TGG | + | chr1.2:44280498-44280517 | MS.gene46428:intron | 35.0% |
| !! | CTCTTGATGATTTTGAGGAA+GGG | + | chr1.2:44280865-44280884 | MS.gene46428:CDS | 35.0% |
| !! | TCTCTTGATGATTTTGAGGA+AGG | + | chr1.2:44280864-44280883 | MS.gene46428:CDS | 35.0% |
| !! | TCTTGATGATTTTGAGGAAG+GGG | + | chr1.2:44280866-44280885 | MS.gene46428:CDS | 35.0% |
| !! | TGACTCTCTTGATGATTTTG+AGG | + | chr1.2:44280860-44280879 | MS.gene46428:CDS | 35.0% |
| !!! | ATGAAAACGATGTCGTTTTG+TGG | + | chr1.2:44279572-44279591 | MS.gene46428:CDS | 35.0% |
| !!! | TGAAAACGATGTCGTTTTGT+GGG | + | chr1.2:44279573-44279592 | MS.gene46428:CDS | 35.0% |
| AAAGAAGTAATGAGCCGTGA+TGG | + | chr1.2:44281883-44281902 | MS.gene46428:CDS | 40.0% | |
| AACATCGGTATCTGAGTTTG+GGG | + | chr1.2:44281828-44281847 | MS.gene46428:CDS | 40.0% | |
| AAGAACAAGATTCCTGTGGT+TGG | + | chr1.2:44279793-44279812 | MS.gene46428:CDS | 40.0% | |
| AAGGGCTCTCCTTTAGATTT+AGG | - | chr1.2:44281164-44281183 | None:intergenic | 40.0% | |
| AATGATAAGGAGTTGGAGTC+TGG | + | chr1.2:44282588-44282607 | MS.gene46428:CDS | 40.0% | |
| AATTTACGGGAAATTGGTGG+GGG | - | chr1.2:44279388-44279407 | None:intergenic | 40.0% | |
| ACATCTTGAACTTAACGGGA+AGG | - | chr1.2:44281584-44281603 | None:intergenic | 40.0% | |
| ACCACAGGAATCTTGTTCTT+TGG | - | chr1.2:44279793-44279812 | None:intergenic | 40.0% | |
| AGCATTCCACTTACAATTCC+TGG | + | chr1.2:44279877-44279896 | MS.gene46428:CDS | 40.0% | |
| AGCGAACTAAGAGCAAGTTT+AGG | - | chr1.2:44279499-44279518 | None:intergenic | 40.0% | |
| AGGGACATCTTGAACTTAAC+GGG | - | chr1.2:44281588-44281607 | None:intergenic | 40.0% | |
| ATGACAGTCACATAAAGCTG+AGG | + | chr1.2:44281786-44281805 | MS.gene46428:intron | 40.0% | |
| ATTAGAGTACAATGACAGGC+AGG | + | chr1.2:44282554-44282573 | MS.gene46428:CDS | 40.0% | |
| ATTCCACTTACAATTCCTGG+TGG | + | chr1.2:44279880-44279899 | MS.gene46428:CDS | 40.0% | |
| CAAGAGAGTCAGAGTCAAAA+GGG | - | chr1.2:44280851-44280870 | None:intergenic | 40.0% | |
| CATACAGTGAGTGAAAGAGA+AGG | - | chr1.2:44279919-44279938 | None:intergenic | 40.0% | |
| CCATATGCCTTCTTCAACAA+GGG | - | chr1.2:44281182-44281201 | None:intergenic | 40.0% | |
| CGAATTTACGGGAAATTGGT+GGG | - | chr1.2:44279390-44279409 | None:intergenic | 40.0% | |
| CTTCTCATCAAAACTCTCTC+CGG | + | chr1.2:44279418-44279437 | MS.gene46428:CDS | 40.0% | |
| CTTGAAATTCGATGGCAACA+CGG | + | chr1.2:44282455-44282474 | MS.gene46428:CDS | 40.0% | |
| CTTGAACTTTGCGCTACATA+AGG | - | chr1.2:44281095-44281114 | None:intergenic | 40.0% | |
| GAACATCGGTATCTGAGTTT+GGG | + | chr1.2:44281827-44281846 | MS.gene46428:CDS | 40.0% | |
| GAATTTACGGGAAATTGGTG+GGG | - | chr1.2:44279389-44279408 | None:intergenic | 40.0% | |
| GCAGATATCAATCAGCTTAG+TGG | + | chr1.2:44280584-44280603 | MS.gene46428:intron | 40.0% | |
| GCTATCAAACTGGGACTTTA+TGG | - | chr1.2:44282043-44282062 | None:intergenic | 40.0% | |
| TACTGCATCATTGACACTCT+TGG | + | chr1.2:44282396-44282415 | MS.gene46428:CDS | 40.0% | |
| TATCTGCACACAATCAAGAG+CGG | - | chr1.2:44280571-44280590 | None:intergenic | 40.0% | |
| TATTCGAGCATGAGAGTGAA+GGG | + | chr1.2:44280981-44281000 | MS.gene46428:CDS | 40.0% | |
| TCAAGAGAGTCAGAGTCAAA+AGG | - | chr1.2:44280852-44280871 | None:intergenic | 40.0% | |
| TCATTCAGAAGAGGTAAAGG+AGG | + | chr1.2:44280893-44280912 | MS.gene46428:CDS | 40.0% | |
| TCCATATGCCTTCTTCAACA+AGG | - | chr1.2:44281183-44281202 | None:intergenic | 40.0% | |
| TCGAATTTACGGGAAATTGG+TGG | - | chr1.2:44279391-44279410 | None:intergenic | 40.0% | |
| TGAGATTAGTAATGCCGGAA+AGG | + | chr1.2:44282290-44282309 | MS.gene46428:CDS | 40.0% | |
| TGATGTAGGGTTTGAATCAG+GGG | + | chr1.2:44279767-44279786 | MS.gene46428:intron | 40.0% | |
| TGCATCTGTTGTTGATCAGA+AGG | + | chr1.2:44279843-44279862 | MS.gene46428:CDS | 40.0% | |
| TGGGATGAGATTAGTAATGC+CGG | + | chr1.2:44282285-44282304 | MS.gene46428:CDS | 40.0% | |
| TTCAGGTGCAAATCGAACAT+CGG | + | chr1.2:44281813-44281832 | MS.gene46428:CDS | 40.0% | |
| TTTCAGCAACTCTCCTCAAT+GGG | + | chr1.2:44281619-44281638 | MS.gene46428:intron | 40.0% | |
| ! | AAGAAGGCATATGGAGAAGA+AGG | + | chr1.2:44281188-44281207 | MS.gene46428:CDS | 40.0% |
| ! | ACATCGTTTTCATCTCCCTT+AGG | - | chr1.2:44279565-44279584 | None:intergenic | 40.0% |
| ! | CTTGTGTCTGAAGTTTCATG+TGG | - | chr1.2:44281909-44281928 | None:intergenic | 40.0% |
| ! | GCGGTTGTGAGAAATTTTAC+TGG | + | chr1.2:44279529-44279548 | MS.gene46428:CDS | 40.0% |
| !! | ACTTTTCAGGAACAACGGAA+AGG | - | chr1.2:44282182-44282201 | None:intergenic | 40.0% |
| !! | CTTTTCAGGAACAACGGAAA+GGG | - | chr1.2:44282181-44282200 | None:intergenic | 40.0% |
| !! | TTTTCAGGAACAACGGAAAG+GGG | - | chr1.2:44282180-44282199 | None:intergenic | 40.0% |
| AAATTACTCTGGCAGGAGTG+AGG | + | chr1.2:44280809-44280828 | MS.gene46428:CDS | 45.0% | |
| AAGATTCCTGTGGTTGGAAC+AGG | + | chr1.2:44279799-44279818 | MS.gene46428:CDS | 45.0% | |
| AAGGCATATGGAGAAGAAGG+TGG | + | chr1.2:44281191-44281210 | MS.gene46428:CDS | 45.0% | |
| AATGAACCTGTTCCAACCAC+AGG | - | chr1.2:44279808-44279827 | None:intergenic | 45.0% | |
| ACTGGGACTTTATGGGCATT+AGG | - | chr1.2:44282035-44282054 | None:intergenic | 45.0% | |
| ACTTTATGGGCATTAGGTCG+CGG | - | chr1.2:44282029-44282048 | None:intergenic | 45.0% | |
| AGATGATGAAATGGCGTCCA+TGG | + | chr1.2:44279362-44279381 | MS.gene46428:CDS | 45.0% | |
| AGCATCTGTCACAGTAACTG+AGG | + | chr1.2:44282848-44282867 | MS.gene46428:CDS | 45.0% | |
| AGGGGATTCTCATTCAGAAG+AGG | + | chr1.2:44280884-44280903 | MS.gene46428:CDS | 45.0% | |
| ATTCATCAGAGCTAAGCTGC+CGG | - | chr1.2:44281238-44281257 | None:intergenic | 45.0% | |
| CAGAGGGAAAGAATCATGCA+AGG | + | chr1.2:44282665-44282684 | MS.gene46428:CDS | 45.0% | |
| CATAAAGCTGAGGACGATTC+AGG | + | chr1.2:44281796-44281815 | MS.gene46428:CDS | 45.0% | |
| CATCCAGAAGGAATGGATGA+GGG | + | chr1.2:44282219-44282238 | MS.gene46428:CDS | 45.0% | |
| CATTCGCCGTTGAAATTCGT+TGG | + | chr1.2:44279467-44279486 | MS.gene46428:CDS | 45.0% | |
| CCACAAGTAACGATGAACCT+CGG | + | chr1.2:44282316-44282335 | MS.gene46428:CDS | 45.0% | |
| CGAACATCGGTATCTGAGTT+TGG | + | chr1.2:44281826-44281845 | MS.gene46428:CDS | 45.0% | |
| CGTTGGAAGTTTGCCAAAAG+AGG | + | chr1.2:44281046-44281065 | MS.gene46428:CDS | 45.0% | |
| CTATTCGAGCATGAGAGTGA+AGG | + | chr1.2:44280980-44280999 | MS.gene46428:CDS | 45.0% | |
| CTCAACTTTCTCTTCCTCCA+AGG | - | chr1.2:44281131-44281150 | None:intergenic | 45.0% | |
| CTTTCAGCAACTCTCCTCAA+TGG | + | chr1.2:44281618-44281637 | MS.gene46428:intron | 45.0% | |
| CTTTCTCTGACTCTCCTGAT+TGG | - | chr1.2:44280680-44280699 | None:intergenic | 45.0% | |
| GAACCACCAGGAATTGTAAG+TGG | - | chr1.2:44279886-44279905 | None:intergenic | 45.0% | |
| GAAGTTTCATGTGGCCATCA+CGG | - | chr1.2:44281900-44281919 | None:intergenic | 45.0% | |
| GAGGTTTCCACTATCAAAGC+TGG | + | chr1.2:44280702-44280721 | MS.gene46428:CDS | 45.0% | |
| GCCAAAGAACAAGATTCCTG+TGG | + | chr1.2:44279789-44279808 | MS.gene46428:CDS | 45.0% | |
| GCCGTTGAAATTCGTTGGAA+AGG | + | chr1.2:44279472-44279491 | MS.gene46428:CDS | 45.0% | |
| GCTCAAGAGAATAGTGAGCT+TGG | + | chr1.2:44280618-44280637 | MS.gene46428:CDS | 45.0% | |
| GGAAGTGAGGGAAATTACTC+TGG | + | chr1.2:44280798-44280817 | MS.gene46428:CDS | 45.0% | |
| GGCACAAGAAAATAGGGTGT+TGG | + | chr1.2:44281319-44281338 | MS.gene46428:intron | 45.0% | |
| GTCTTGTGATGTTGTTCCTG+TGG | + | chr1.2:44282818-44282837 | MS.gene46428:CDS | 45.0% | |
| GTTACTTGTGGAGTCCTTTC+CGG | - | chr1.2:44282307-44282326 | None:intergenic | 45.0% | |
| TAAAGGAGGATTCCAGTGTG+CGG | + | chr1.2:44280907-44280926 | MS.gene46428:CDS | 45.0% | |
| TCAACGGCGAATGTATTCTC+CGG | - | chr1.2:44279460-44279479 | None:intergenic | 45.0% | |
| TCATCCAGAAGGAATGGATG+AGG | + | chr1.2:44282218-44282237 | MS.gene46428:CDS | 45.0% | |
| TCATTGACACTCTTGGAGAG+AGG | + | chr1.2:44282403-44282422 | MS.gene46428:CDS | 45.0% | |
| TCGTCAGACGAAAACACAAC+CGG | + | chr1.2:44282507-44282526 | MS.gene46428:CDS | 45.0% | |
| TGATCCACCAGCATTTGCAA+AGG | - | chr1.2:44280958-44280977 | None:intergenic | 45.0% | |
| TTCGAGATGGCTCATTAGAG+TGG | + | chr1.2:44282067-44282086 | MS.gene46428:CDS | 45.0% | |
| TTGCTCTTAGTTCGCTTCGT+CGG | + | chr1.2:44279503-44279522 | MS.gene46428:CDS | 45.0% | |
| TTTCAGGAACAACGGAAAGG+GGG | - | chr1.2:44282179-44282198 | None:intergenic | 45.0% | |
| ! | CCCTTGTTGAAGAAGGCATA+TGG | + | chr1.2:44281179-44281198 | MS.gene46428:CDS | 45.0% |
| ! | CCTAAGACCAGCTTTGATAG+TGG | - | chr1.2:44280712-44280731 | None:intergenic | 45.0% |
| ! | GACTCTCCTGATTGGTTCAA+GGG | - | chr1.2:44280672-44280691 | None:intergenic | 45.0% |
| ! | GGAAGGTTCGATTTTCTGCA+TGG | + | chr1.2:44282240-44282259 | MS.gene46428:CDS | 45.0% |
| ! | GTATGAACTCTTCTGGGGAT+TGG | - | chr1.2:44281478-44281497 | None:intergenic | 45.0% |
| ! | GTTTTCGTCTGACGATTGAG+TGG | - | chr1.2:44282502-44282521 | None:intergenic | 45.0% |
| ! | TGACTCTCCTGATTGGTTCA+AGG | - | chr1.2:44280673-44280692 | None:intergenic | 45.0% |
| ! | TTCACTGCGCTGATCAATTG+AGG | - | chr1.2:44281941-44281960 | None:intergenic | 45.0% |
| !! | AAACTGGCCTTTGCAAATGC+TGG | + | chr1.2:44280948-44280967 | MS.gene46428:CDS | 45.0% |
| !! | AAGACGAGGTTTTGTGCAGA+GGG | + | chr1.2:44282649-44282668 | MS.gene46428:CDS | 45.0% |
| !! | CCACTATCAAAGCTGGTCTT+AGG | + | chr1.2:44280709-44280728 | MS.gene46428:CDS | 45.0% |
| !! | TGCAACGGTTTGTTGTTCAC+CGG | - | chr1.2:44282529-44282548 | None:intergenic | 45.0% |
| !!! | AAAATTGAATTTTTAAAATT+TGG | + | chr1.2:44279738-44279757 | MS.gene46428:intron | 5.0% |
| !!! | AAATTGAATTTTTAAAATTT+GGG | + | chr1.2:44279739-44279758 | MS.gene46428:intron | 5.0% |
| !!! | ATTATATTTATATACTTTTA+AGG | + | chr1.2:44280257-44280276 | MS.gene46428:intron | 5.0% |
| !!! | TTATTTTTATATACTTTTTA+TGG | - | chr1.2:44280090-44280109 | None:intergenic | 5.0% |
| !!! | TTTAAAAATTCAATTTTTAA+CGG | - | chr1.2:44279735-44279754 | None:intergenic | 5.0% |
| ACAGATGCTTCTTCAGCCAC+AGG | - | chr1.2:44282837-44282856 | None:intergenic | 50.0% | |
| ACTGGTGAGGCTCATCCTAA+GGG | + | chr1.2:44279547-44279566 | MS.gene46428:CDS | 50.0% | |
| AGGAGAGCCCTTGTTGAAGA+AGG | + | chr1.2:44281172-44281191 | MS.gene46428:CDS | 50.0% | |
| AGGAGAGTCAGAGAAAGACG+AGG | + | chr1.2:44280683-44280702 | MS.gene46428:CDS | 50.0% | |
| ATCGTTCAGCTACGGGAAAC+TGG | + | chr1.2:44280932-44280951 | MS.gene46428:CDS | 50.0% | |
| CAAGACGCAGCTTATTGCCT+TGG | + | chr1.2:44281111-44281130 | MS.gene46428:CDS | 50.0% | |
| CAGAAGGAATGGATGAGGGA+AGG | + | chr1.2:44282223-44282242 | MS.gene46428:CDS | 50.0% | |
| CAGCTTAGTGGAGCTAAGAG+TGG | + | chr1.2:44280596-44280615 | MS.gene46428:CDS | 50.0% | |
| CCGAGGTTCATCGTTACTTG+TGG | - | chr1.2:44282319-44282338 | None:intergenic | 50.0% | |
| CTCATCAAAACTCTCTCCGG+TGG | + | chr1.2:44279421-44279440 | MS.gene46428:CDS | 50.0% | |
| CTTCCCTCATCCATTCCTTC+TGG | - | chr1.2:44282225-44282244 | None:intergenic | 50.0% | |
| CTTGGAGAGAGGCTTTACGA+AGG | + | chr1.2:44282414-44282433 | MS.gene46428:CDS | 50.0% | |
| GCATCACCCTTGAACCAATC+AGG | + | chr1.2:44280663-44280682 | MS.gene46428:CDS | 50.0% | |
| GGAATCGCTCCCTATATGTC+TGG | - | chr1.2:44282110-44282129 | None:intergenic | 50.0% | |
| GTGAGGGAAATTACTCTGGC+AGG | + | chr1.2:44280802-44280821 | MS.gene46428:CDS | 50.0% | |
| GTGCGGAAATCGTTCAGCTA+CGG | + | chr1.2:44280924-44280943 | MS.gene46428:CDS | 50.0% | |
| GTTTGGGGACGACAACTTTG+CGG | + | chr1.2:44281843-44281862 | MS.gene46428:CDS | 50.0% | |
| TACTGGTGAGGCTCATCCTA+AGG | + | chr1.2:44279546-44279565 | MS.gene46428:CDS | 50.0% | |
| TCAGTCGAAAAGTGAGCGTG+AGG | + | chr1.2:44282626-44282645 | MS.gene46428:CDS | 50.0% | |
| TCTGACGATTGAGTGGCATC+TGG | - | chr1.2:44282495-44282514 | None:intergenic | 50.0% | |
| TGCGGAAATCGTTCAGCTAC+GGG | + | chr1.2:44280925-44280944 | MS.gene46428:CDS | 50.0% | |
| TGGTTCAAGGGTGATGCAAC+AGG | - | chr1.2:44280660-44280679 | None:intergenic | 50.0% | |
| TTGCGCTACATAAGGCTCAG+AGG | - | chr1.2:44281087-44281106 | None:intergenic | 50.0% | |
| ! | AACGGAAAGGGGGCGAATTT+TGG | - | chr1.2:44282169-44282188 | None:intergenic | 50.0% |
| ! | GAAGGGTGATGACGAGGATT+GGG | + | chr1.2:44280998-44281017 | MS.gene46428:CDS | 50.0% |
| ! | GCATTAGGTCGCGGTTGTTT+TGG | - | chr1.2:44282020-44282039 | None:intergenic | 50.0% |
| ! | TGAAGGGTGATGACGAGGAT+TGG | + | chr1.2:44280997-44281016 | MS.gene46428:CDS | 50.0% |
| !! | GAAGACGAGGTTTTGTGCAG+AGG | + | chr1.2:44282648-44282667 | MS.gene46428:CDS | 50.0% |
| AAACCGAGCCGTGAGGAAGA+GGG | + | chr1.2:44280777-44280796 | MS.gene46428:CDS | 55.0% | |
| AAGTGAGCGTGAGGAAGACG+AGG | + | chr1.2:44282635-44282654 | MS.gene46428:CDS | 55.0% | |
| ACAACTTTGCGGTGGGCAGT+TGG | + | chr1.2:44281854-44281873 | MS.gene46428:CDS | 55.0% | |
| ACGGTGAAAGCGATCTCCCA+AGG | - | chr1.2:44279655-44279674 | None:intergenic | 55.0% | |
| ATCAAGGAAACCGAGCCGTG+AGG | + | chr1.2:44280770-44280789 | MS.gene46428:CDS | 55.0% | |
| CAACTTTGCGGTGGGCAGTT+GGG | + | chr1.2:44281855-44281874 | MS.gene46428:CDS | 55.0% | |
| CCTCACTTCCCTCTTCCTCA+CGG | - | chr1.2:44280788-44280807 | None:intergenic | 55.0% | |
| CGTGAGGAAGAGGGAAGTGA+GGG | + | chr1.2:44280786-44280805 | MS.gene46428:CDS | 55.0% | |
| GACGCAGCTTATTGCCTTGG+AGG | + | chr1.2:44281114-44281133 | MS.gene46428:CDS | 55.0% | |
| GCTGAACGATTTCCGCACAC+TGG | - | chr1.2:44280922-44280941 | None:intergenic | 55.0% | |
| TACTCTGGCAGGAGTGAGGA+TGG | + | chr1.2:44280813-44280832 | MS.gene46428:CDS | 55.0% | |
| TAGTTCGCTTCGTCGGAACG+CGG | + | chr1.2:44279510-44279529 | MS.gene46428:CDS | 55.0% | |
| ! | CTGGCCTTTGCAAATGCTGG+TGG | + | chr1.2:44280951-44280970 | MS.gene46428:CDS | 55.0% |
| ! | GAGAGTGAAGGGTGATGACG+AGG | + | chr1.2:44280992-44281011 | MS.gene46428:CDS | 55.0% |
| ! | TTGGAGTCTGGTGCTGAGAC+AGG | + | chr1.2:44282600-44282619 | MS.gene46428:CDS | 55.0% |
| AGCGCAGTGAACGTGCAGCA+GGG | + | chr1.2:44281950-44281969 | MS.gene46428:CDS | 60.0% | |
| CCGTGAGGAAGAGGGAAGTG+AGG | + | chr1.2:44280785-44280804 | MS.gene46428:CDS | 60.0% | |
| CTTCCCTCTTCCTCACGGCT+CGG | - | chr1.2:44280783-44280802 | None:intergenic | 60.0% | |
| GAAACCGAGCCGTGAGGAAG+AGG | + | chr1.2:44280776-44280795 | MS.gene46428:CDS | 60.0% | |
| GGGGACGACAACTTTGCGGT+GGG | + | chr1.2:44281847-44281866 | MS.gene46428:CDS | 60.0% | |
| GGGTCAACAGCAGAACCACC+AGG | - | chr1.2:44279898-44279917 | None:intergenic | 60.0% | |
| TGGGGACGACAACTTTGCGG+TGG | + | chr1.2:44281846-44281865 | MS.gene46428:CDS | 60.0% | |
| CAGCGCAGTGAACGTGCAGC+AGG | + | chr1.2:44281949-44281968 | MS.gene46428:CDS | 65.0% | |
| CGGCGAGAGATCGAGTCCAC+CGG | - | chr1.2:44279440-44279459 | None:intergenic | 65.0% | |
| CGGGAAATTGGTGGGGGCCA+TGG | - | chr1.2:44279382-44279401 | None:intergenic | 65.0% | |
| GCGCAGTGAACGTGCAGCAG+GGG | + | chr1.2:44281951-44281970 | MS.gene46428:CDS | 65.0% | |
| ! | CGGTGGACTCGATCTCTCGC+CGG | + | chr1.2:44279438-44279457 | MS.gene46428:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 44279352 | 44282881 | 44279352 | ID=MS.gene46428 |
| chr1.2 | mRNA | 44279352 | 44282881 | 44279352 | ID=MS.gene46428.t1;Parent=MS.gene46428 |
| chr1.2 | exon | 44279352 | 44279681 | 44279352 | ID=MS.gene46428.t1.exon1;Parent=MS.gene46428.t1 |
| chr1.2 | CDS | 44279352 | 44279681 | 44279352 | ID=cds.MS.gene46428.t1;Parent=MS.gene46428.t1 |
| chr1.2 | exon | 44279775 | 44279933 | 44279775 | ID=MS.gene46428.t1.exon2;Parent=MS.gene46428.t1 |
| chr1.2 | CDS | 44279775 | 44279933 | 44279775 | ID=cds.MS.gene46428.t1;Parent=MS.gene46428.t1 |
| chr1.2 | exon | 44280588 | 44281271 | 44280588 | ID=MS.gene46428.t1.exon3;Parent=MS.gene46428.t1 |
| chr1.2 | CDS | 44280588 | 44281271 | 44280588 | ID=cds.MS.gene46428.t1;Parent=MS.gene46428.t1 |
| chr1.2 | exon | 44281793 | 44282881 | 44281793 | ID=MS.gene46428.t1.exon4;Parent=MS.gene46428.t1 |
| chr1.2 | CDS | 44281793 | 44282881 | 44281793 | ID=cds.MS.gene46428.t1;Parent=MS.gene46428.t1 |
| Gene Sequence |
| Protein sequence |
