Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46444.t1 | KEH41970.1 | 97.7 | 301 | 7 | 0 | 1 | 301 | 112 | 412 | 2.90E-177 | 630.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46444.t1 | Q9CAX1 | 68.8 | 288 | 90 | 0 | 1 | 288 | 137 | 424 | 4.2e-124 | 445.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46444.t1 | A0A072VV51 | 97.7 | 301 | 7 | 0 | 1 | 301 | 112 | 412 | 2.1e-177 | 630.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058448 | MS.gene46444 | 0.800869 | 1.18E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTGCGTTCTTCGCTTTC+TGG | 0.066218 | 1.3:+42895963 | None:intergenic |
| GTAGCCCTTGTGTTTGCTTA+TGG | 0.252402 | 1.3:+42897361 | None:intergenic |
| GGTTCCTGGTTCCCGATATT+TGG | 0.265711 | 1.3:+42896103 | None:intergenic |
| TACATTGGTATTCTAATAAC+TGG | 0.269659 | 1.3:-42897211 | MS.gene46444:CDS |
| GGAGCATCGGGTGGGGTTCC+TGG | 0.280362 | 1.3:+42896089 | None:intergenic |
| GCACCTTTCTTATCTATTAT+AGG | 0.282563 | 1.3:-42897290 | MS.gene46444:CDS |
| CATTTACCTTCCCACCTTCC+TGG | 0.294788 | 1.3:+42896887 | None:intergenic |
| TAGCCCTTGTGTTTGCTTAT+GGG | 0.301316 | 1.3:+42897362 | None:intergenic |
| ACATGACTGTAGAATATTAT+AGG | 0.311467 | 1.3:-42897313 | MS.gene46444:CDS |
| CAACTCCTCTCTAAGAAATA+TGG | 0.312711 | 1.3:-42896002 | MS.gene46444:CDS |
| TTTGAACATCACATATCTTT+CGG | 0.342805 | 1.3:-42896150 | MS.gene46444:CDS |
| GCTATGCCCCTGTTCATTAC+AGG | 0.375757 | 1.3:-42896762 | MS.gene46444:intron |
| TTGCAGGGGTATCTATTTCC+AGG | 0.376397 | 1.3:-42896905 | MS.gene46444:intron |
| TATACTTGCCTGTAATGAAC+AGG | 0.389013 | 1.3:+42896754 | None:intergenic |
| CATGACTGTAGAATATTATA+GGG | 0.397772 | 1.3:-42897312 | MS.gene46444:CDS |
| AATGGACGCATTGTGTTTGC+AGG | 0.402906 | 1.3:-42897479 | MS.gene46444:CDS |
| TACTTTGCATGTTGTCAAAA+GGG | 0.411641 | 1.3:-42897424 | MS.gene46444:CDS |
| TTACTTTGCATGTTGTCAAA+AGG | 0.415390 | 1.3:-42897425 | MS.gene46444:CDS |
| ACGGTCACCCTTCCAAATAT+CGG | 0.418287 | 1.3:-42896115 | MS.gene46444:CDS |
| CCTTACAGACATGGAAATCA+TGG | 0.428443 | 1.3:-42896831 | MS.gene46444:CDS |
| AACCCCACCCGATGCTCCTC+AGG | 0.434501 | 1.3:-42896084 | MS.gene46444:CDS |
| CATATTTCTTAGAGAGGAGT+TGG | 0.437810 | 1.3:+42896003 | None:intergenic |
| ATAAGTTCATTCCACGTGTC+TGG | 0.438600 | 1.3:+42896032 | None:intergenic |
| CTACTTAGTGATGAAATTTG+AGG | 0.440778 | 1.3:-42897342 | MS.gene46444:CDS |
| TCACATATCTTTCGGAATTG+AGG | 0.454039 | 1.3:-42896142 | MS.gene46444:CDS |
| CTACAATCCTGAGGAGCATC+GGG | 0.479635 | 1.3:+42896077 | None:intergenic |
| ATTCCACGTGTCTGGCACTC+CGG | 0.480121 | 1.3:+42896040 | None:intergenic |
| GATATAAATACGTTGTAATA+CGG | 0.481799 | 1.3:+42896218 | None:intergenic |
| CCATGATTTCCATGTCTGTA+AGG | 0.482202 | 1.3:+42896831 | None:intergenic |
| GTTGTAAAAGAGATGCAATA+TGG | 0.488049 | 1.3:-42896191 | MS.gene46444:CDS |
| AAGAGATGCAATATGGAAGC+TGG | 0.489238 | 1.3:-42896184 | MS.gene46444:CDS |
| AAGAAGACGAAACTCCTCAT+AGG | 0.494604 | 1.3:+42896790 | None:intergenic |
| CCTGGTTCCCGATATTTGGA+AGG | 0.494657 | 1.3:+42896107 | None:intergenic |
| CGGTCACCCTTCCAAATATC+GGG | 0.498571 | 1.3:-42896114 | MS.gene46444:CDS |
| CTCCTCAGGATTGTAGCCAC+TGG | 0.511858 | 1.3:-42896070 | MS.gene46444:CDS |
| TTCCACGTGTCTGGCACTCC+GGG | 0.514233 | 1.3:+42896041 | None:intergenic |
| ATATTTCTTAGAGAGGAGTT+GGG | 0.521772 | 1.3:+42896004 | None:intergenic |
| GCTACAATCCTGAGGAGCAT+CGG | 0.523452 | 1.3:+42896076 | None:intergenic |
| TTCAGTGGGCAGAAACCAAT+GGG | 0.529626 | 1.3:-42897453 | MS.gene46444:CDS |
| TGTAGCCACTGGTGTTTACC+CGG | 0.530101 | 1.3:-42896059 | MS.gene46444:CDS |
| TGCAAAGTAATGACTCCCAT+TGG | 0.533961 | 1.3:+42897438 | None:intergenic |
| GGTATCTATTTCCAGGAAGG+TGG | 0.535569 | 1.3:-42896898 | MS.gene46444:CDS |
| AGGAATGGCACATGGAATGA+AGG | 0.537052 | 1.3:-42896299 | MS.gene46444:CDS |
| ATTCAGTGGGCAGAAACCAA+TGG | 0.546878 | 1.3:-42897454 | MS.gene46444:CDS |
| CCTTCCAAATATCGGGAACC+AGG | 0.563273 | 1.3:-42896107 | MS.gene46444:CDS |
| CTGGTTCCCGATATTTGGAA+GGG | 0.564236 | 1.3:+42896108 | None:intergenic |
| ACTTTGCATGTTGTCAAAAG+GGG | 0.566215 | 1.3:-42897423 | MS.gene46444:CDS |
| ATCCTGAGGAGCATCGGGTG+GGG | 0.569446 | 1.3:+42896082 | None:intergenic |
| GTATCTATTTCCAGGAAGGT+GGG | 0.572325 | 1.3:-42896897 | MS.gene46444:CDS |
| CTTTCGGAATTGAGGAAAGA+CGG | 0.573755 | 1.3:-42896134 | MS.gene46444:CDS |
| TGATGCCATATTTCTTAGAG+AGG | 0.576119 | 1.3:+42895997 | None:intergenic |
| GTCCATTGCGACTCCTCTCT+AGG | 0.578072 | 1.3:+42897495 | None:intergenic |
| TGACCTATAATAGATAAGAA+AGG | 0.579713 | 1.3:+42897287 | None:intergenic |
| TTGGTATTCTAATAACTGGA+AGG | 0.580759 | 1.3:-42897207 | MS.gene46444:CDS |
| CTCCTAGAGAGGAGTCGCAA+TGG | 0.581234 | 1.3:-42897497 | MS.gene46444:CDS |
| TGAGTAATCTAAATCCTATG+AGG | 0.582191 | 1.3:-42896804 | MS.gene46444:CDS |
| ACTCCTCTCTAGGAGGTCAC+TGG | 0.585040 | 1.3:+42897505 | None:intergenic |
| GTGTTTGCAGGTGATTCAGT+GGG | 0.590354 | 1.3:-42897467 | MS.gene46444:CDS |
| TGTGTTTGCAGGTGATTCAG+TGG | 0.591622 | 1.3:-42897468 | MS.gene46444:CDS |
| TTAGGAGATCCTTACAGACA+TGG | 0.594474 | 1.3:-42896840 | MS.gene46444:CDS |
| CAATCCTGAGGAGCATCGGG+TGG | 0.595880 | 1.3:+42896080 | None:intergenic |
| AATCCTGAGGAGCATCGGGT+GGG | 0.600124 | 1.3:+42896081 | None:intergenic |
| GAAATTGCAGGAATGGCACA+TGG | 0.608323 | 1.3:-42896307 | MS.gene46444:intron |
| CTATTTCCAGGAAGGTGGGA+AGG | 0.609686 | 1.3:-42896893 | MS.gene46444:CDS |
| TCAGACTTGATGAGTTACAT+TGG | 0.612151 | 1.3:-42897226 | MS.gene46444:CDS |
| TGGTATTCTAATAACTGGAA+GGG | 0.614654 | 1.3:-42897206 | MS.gene46444:CDS |
| AGGGGTATCTATTTCCAGGA+AGG | 0.619562 | 1.3:-42896901 | MS.gene46444:CDS |
| CTTACAGACATGGAAATCAT+GGG | 0.626328 | 1.3:-42896830 | MS.gene46444:CDS |
| AAGTCCCATAAGCAAACACA+AGG | 0.628390 | 1.3:-42897366 | MS.gene46444:CDS |
| ATGCCAGTGACCTCCTAGAG+AGG | 0.628848 | 1.3:-42897508 | MS.gene46444:CDS |
| ATACTTGCCTGTAATGAACA+GGG | 0.637425 | 1.3:+42896755 | None:intergenic |
| TACCCGGAGTGCCAGACACG+TGG | 0.640012 | 1.3:-42896043 | MS.gene46444:CDS |
| GCACTCCGGGTAAACACCAG+TGG | 0.663248 | 1.3:+42896054 | None:intergenic |
| AATGGCACATGGAATGAAGG+AGG | 0.677257 | 1.3:-42896296 | MS.gene46444:CDS |
| CATTGCGACTCCTCTCTAGG+AGG | 0.680185 | 1.3:+42897498 | None:intergenic |
| TACTTGCCTGTAATGAACAG+GGG | 0.685669 | 1.3:+42896756 | None:intergenic |
| AGGAAACTGTGACAAAGACA+AGG | 0.691950 | 1.3:-42896276 | MS.gene46444:CDS |
| CACCAGTGGCTACAATCCTG+AGG | 0.695000 | 1.3:+42896068 | None:intergenic |
| AGTCCCATAAGCAAACACAA+GGG | 0.771567 | 1.3:-42897365 | MS.gene46444:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAATTTATGATTATCA+AGG | + | chr1.3:42896764-42896783 | None:intergenic | 15.0% |
| !! | TCAAAAATATATGAAGTTAA+TGG | - | chr1.3:42896086-42896105 | MS.gene46444:CDS | 15.0% |
| !!! | ATTAAAAGCATTAAAATGAA+CGG | - | chr1.3:42896781-42896800 | MS.gene46444:CDS | 15.0% |
| !! | GATATAAATACGTTGTAATA+CGG | + | chr1.3:42897260-42897279 | None:intergenic | 20.0% |
| !!! | AATGTTCTTGTTTTCAATAA+TGG | - | chr1.3:42896296-42896315 | MS.gene46444:CDS | 20.0% |
| !!! | ATGACATACTTTTAGTTTTA+AGG | + | chr1.3:42897077-42897096 | None:intergenic | 20.0% |
| !!! | TAACTTCATATATTTTTGAG+AGG | + | chr1.3:42896085-42896104 | None:intergenic | 20.0% |
| !!! | TATCCAAATATACTTTTGAA+AGG | + | chr1.3:42897134-42897153 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCTAAGAAATGAA+AGG | + | chr1.3:42896413-42896432 | None:intergenic | 20.0% |
| ! | ACATGACTGTAGAATATTAT+AGG | - | chr1.3:42896162-42896181 | MS.gene46444:CDS | 25.0% |
| ! | AGAAATAACACATCTAAACA+AGG | - | chr1.3:42896538-42896557 | MS.gene46444:intron | 25.0% |
| ! | CATGACTGTAGAATATTATA+GGG | - | chr1.3:42896163-42896182 | MS.gene46444:CDS | 25.0% |
| ! | TACATTGGTATTCTAATAAC+TGG | - | chr1.3:42896264-42896283 | MS.gene46444:CDS | 25.0% |
| ! | TGACCTATAATAGATAAGAA+AGG | + | chr1.3:42896191-42896210 | None:intergenic | 25.0% |
| ! | TTTGAAAGGATGACTAAAAT+GGG | + | chr1.3:42897120-42897139 | None:intergenic | 25.0% |
| ! | TTTGAACATCACATATCTTT+CGG | - | chr1.3:42897325-42897344 | MS.gene46444:CDS | 25.0% |
| !! | CATCCTTTCAAAAGTATATT+TGG | - | chr1.3:42897128-42897147 | MS.gene46444:intron | 25.0% |
| !! | TTGTTTTCAATAATGGTCAT+TGG | - | chr1.3:42896303-42896322 | MS.gene46444:intron | 25.0% |
| !!! | TACTTTGAGATCATTTCATT+TGG | - | chr1.3:42896377-42896396 | MS.gene46444:intron | 25.0% |
| !!! | TTTTGAAAGGATGACTAAAA+TGG | + | chr1.3:42897121-42897140 | None:intergenic | 25.0% |
| AAAATTGAGCTAAAGTCATG+TGG | - | chr1.3:42896852-42896871 | MS.gene46444:CDS | 30.0% | |
| ATATTTCTTAGAGAGGAGTT+GGG | + | chr1.3:42897474-42897493 | None:intergenic | 30.0% | |
| CTACTTAGTGATGAAATTTG+AGG | - | chr1.3:42896133-42896152 | MS.gene46444:CDS | 30.0% | |
| GCACCTTTCTTATCTATTAT+AGG | - | chr1.3:42896185-42896204 | MS.gene46444:CDS | 30.0% | |
| GTTGTAAAAGAGATGCAATA+TGG | - | chr1.3:42897284-42897303 | MS.gene46444:CDS | 30.0% | |
| GTTTAAACTTCCTCAAATTC+TGG | + | chr1.3:42896830-42896849 | None:intergenic | 30.0% | |
| TACTTTGCATGTTGTCAAAA+GGG | - | chr1.3:42896051-42896070 | MS.gene46444:CDS | 30.0% | |
| TGAGTAATCTAAATCCTATG+AGG | - | chr1.3:42896671-42896690 | MS.gene46444:intron | 30.0% | |
| TGGTATTCTAATAACTGGAA+GGG | - | chr1.3:42896269-42896288 | MS.gene46444:CDS | 30.0% | |
| TTACTTTGCATGTTGTCAAA+AGG | - | chr1.3:42896050-42896069 | MS.gene46444:CDS | 30.0% | |
| TTGGTATTCTAATAACTGGA+AGG | - | chr1.3:42896268-42896287 | MS.gene46444:CDS | 30.0% | |
| ! | GAGCTTCTAAACAAATTTTG+AGG | + | chr1.3:42896451-42896470 | None:intergenic | 30.0% |
| ! | TTTCTAAGAAATGAAAGGCA+AGG | + | chr1.3:42896408-42896427 | None:intergenic | 30.0% |
| ! | TTTTCAATAATGGTCATTGG+TGG | - | chr1.3:42896306-42896325 | MS.gene46444:intron | 30.0% |
| ACTTTGCATGTTGTCAAAAG+GGG | - | chr1.3:42896052-42896071 | MS.gene46444:CDS | 35.0% | |
| ATACTTGCCTGTAATGAACA+GGG | + | chr1.3:42896723-42896742 | None:intergenic | 35.0% | |
| ATTAAAATGAACGGCATGAG+GGG | - | chr1.3:42896790-42896809 | MS.gene46444:CDS | 35.0% | |
| CATATTTCTTAGAGAGGAGT+TGG | + | chr1.3:42897475-42897494 | None:intergenic | 35.0% | |
| CATTAAAATGAACGGCATGA+GGG | - | chr1.3:42896789-42896808 | MS.gene46444:CDS | 35.0% | |
| CTTACAGACATGGAAATCAT+GGG | - | chr1.3:42896645-42896664 | MS.gene46444:intron | 35.0% | |
| TATACTTGCCTGTAATGAAC+AGG | + | chr1.3:42896724-42896743 | None:intergenic | 35.0% | |
| TCACATATCTTTCGGAATTG+AGG | - | chr1.3:42897333-42897352 | MS.gene46444:CDS | 35.0% | |
| TCAGACTTGATGAGTTACAT+TGG | - | chr1.3:42896249-42896268 | MS.gene46444:CDS | 35.0% | |
| TGATGCCATATTTCTTAGAG+AGG | + | chr1.3:42897481-42897500 | None:intergenic | 35.0% | |
| ! | AACAAGGTCTATCATTTTGC+AGG | - | chr1.3:42896554-42896573 | MS.gene46444:intron | 35.0% |
| ! | ACAAGGTCTATCATTTTGCA+GGG | - | chr1.3:42896555-42896574 | MS.gene46444:intron | 35.0% |
| ! | ATGTCACTAGATGAGTTTTG+TGG | + | chr1.3:42896218-42896237 | None:intergenic | 35.0% |
| ! | CAACTCCTCTCTAAGAAATA+TGG | - | chr1.3:42897473-42897492 | MS.gene46444:CDS | 35.0% |
| ! | TGACAGTGAAAGAAGCTTTT+AGG | - | chr1.3:42896617-42896636 | MS.gene46444:intron | 35.0% |
| AAGAAGACGAAACTCCTCAT+AGG | + | chr1.3:42896688-42896707 | None:intergenic | 40.0% | |
| AAGAGATGCAATATGGAAGC+TGG | - | chr1.3:42897291-42897310 | MS.gene46444:CDS | 40.0% | |
| AAGTCCCATAAGCAAACACA+AGG | - | chr1.3:42896109-42896128 | MS.gene46444:CDS | 40.0% | |
| AGGAAACTGTGACAAAGACA+AGG | - | chr1.3:42897199-42897218 | MS.gene46444:CDS | 40.0% | |
| AGTCCCATAAGCAAACACAA+GGG | - | chr1.3:42896110-42896129 | MS.gene46444:CDS | 40.0% | |
| AGTCTGTACAGTGAAATTGC+AGG | - | chr1.3:42897156-42897175 | MS.gene46444:CDS | 40.0% | |
| ATAAGTTCATTCCACGTGTC+TGG | + | chr1.3:42897446-42897465 | None:intergenic | 40.0% | |
| CCATGATTTCCATGTCTGTA+AGG | + | chr1.3:42896647-42896666 | None:intergenic | 40.0% | |
| CCTTACAGACATGGAAATCA+TGG | - | chr1.3:42896644-42896663 | MS.gene46444:intron | 40.0% | |
| CTTTCGGAATTGAGGAAAGA+CGG | - | chr1.3:42897341-42897360 | MS.gene46444:CDS | 40.0% | |
| GCATTAAAATGAACGGCATG+AGG | - | chr1.3:42896788-42896807 | MS.gene46444:CDS | 40.0% | |
| GTACAGTGAAATTGCAGGAA+TGG | - | chr1.3:42897161-42897180 | MS.gene46444:CDS | 40.0% | |
| GTATCTATTTCCAGGAAGGT+GGG | - | chr1.3:42896578-42896597 | MS.gene46444:intron | 40.0% | |
| TACTTGCCTGTAATGAACAG+GGG | + | chr1.3:42896722-42896741 | None:intergenic | 40.0% | |
| TAGCCCTTGTGTTTGCTTAT+GGG | + | chr1.3:42896116-42896135 | None:intergenic | 40.0% | |
| TGCAAAGTAATGACTCCCAT+TGG | + | chr1.3:42896040-42896059 | None:intergenic | 40.0% | |
| TGTGACTGTTTGAGAGCTTA+TGG | + | chr1.3:42897012-42897031 | None:intergenic | 40.0% | |
| TTAAAATGAACGGCATGAGG+GGG | - | chr1.3:42896791-42896810 | MS.gene46444:CDS | 40.0% | |
| TTAGGAGATCCTTACAGACA+TGG | - | chr1.3:42896635-42896654 | MS.gene46444:intron | 40.0% | |
| ! | AGTTTTGCAGGATCGTTTTC+TGG | + | chr1.3:42897227-42897246 | None:intergenic | 40.0% |
| ! | CAAGGTCTATCATTTTGCAG+GGG | - | chr1.3:42896556-42896575 | MS.gene46444:intron | 40.0% |
| !! | TCACTAGATGAGTTTTGTGG+TGG | + | chr1.3:42896215-42896234 | None:intergenic | 40.0% |
| AATGGACGCATTGTGTTTGC+AGG | - | chr1.3:42895996-42896015 | MS.gene46444:CDS | 45.0% | |
| AATGGCACATGGAATGAAGG+AGG | - | chr1.3:42897179-42897198 | MS.gene46444:CDS | 45.0% | |
| ACGGTCACCCTTCCAAATAT+CGG | - | chr1.3:42897360-42897379 | MS.gene46444:CDS | 45.0% | |
| AGGAATGGCACATGGAATGA+AGG | - | chr1.3:42897176-42897195 | MS.gene46444:CDS | 45.0% | |
| ATTCAGTGGGCAGAAACCAA+TGG | - | chr1.3:42896021-42896040 | MS.gene46444:CDS | 45.0% | |
| CTGGTTCCCGATATTTGGAA+GGG | + | chr1.3:42897370-42897389 | None:intergenic | 45.0% | |
| GAAATTGCAGGAATGGCACA+TGG | - | chr1.3:42897168-42897187 | MS.gene46444:CDS | 45.0% | |
| GGGATGCAATCCAGAATTTG+AGG | - | chr1.3:42896817-42896836 | MS.gene46444:CDS | 45.0% | |
| GGTATCTATTTCCAGGAAGG+TGG | - | chr1.3:42896577-42896596 | MS.gene46444:intron | 45.0% | |
| GTAGCCCTTGTGTTTGCTTA+TGG | + | chr1.3:42896117-42896136 | None:intergenic | 45.0% | |
| GTGTTTGCAGGTGATTCAGT+GGG | - | chr1.3:42896008-42896027 | MS.gene46444:CDS | 45.0% | |
| TGTGTTTGCAGGTGATTCAG+TGG | - | chr1.3:42896007-42896026 | MS.gene46444:CDS | 45.0% | |
| TTCAGTGGGCAGAAACCAAT+GGG | - | chr1.3:42896022-42896041 | MS.gene46444:CDS | 45.0% | |
| !! | AGGGGTATCTATTTCCAGGA+AGG | - | chr1.3:42896574-42896593 | MS.gene46444:intron | 45.0% |
| !! | TTGCAGGGGTATCTATTTCC+AGG | - | chr1.3:42896570-42896589 | MS.gene46444:intron | 45.0% |
| CATTTACCTTCCCACCTTCC+TGG | + | chr1.3:42896591-42896610 | None:intergenic | 50.0% | |
| CCTGGTTCCCGATATTTGGA+AGG | + | chr1.3:42897371-42897390 | None:intergenic | 50.0% | |
| CCTTCCAAATATCGGGAACC+AGG | - | chr1.3:42897368-42897387 | MS.gene46444:CDS | 50.0% | |
| CGGTCACCCTTCCAAATATC+GGG | - | chr1.3:42897361-42897380 | MS.gene46444:CDS | 50.0% | |
| CTATTTCCAGGAAGGTGGGA+AGG | - | chr1.3:42896582-42896601 | MS.gene46444:intron | 50.0% | |
| GCTATGCCCCTGTTCATTAC+AGG | - | chr1.3:42896713-42896732 | MS.gene46444:intron | 50.0% | |
| GGTTCCTGGTTCCCGATATT+TGG | + | chr1.3:42897375-42897394 | None:intergenic | 50.0% | |
| TGTAGCCACTGGTGTTTACC+CGG | - | chr1.3:42897416-42897435 | MS.gene46444:CDS | 50.0% | |
| ! | GCTACAATCCTGAGGAGCAT+CGG | + | chr1.3:42897402-42897421 | None:intergenic | 50.0% |
| !! | CTACAATCCTGAGGAGCATC+GGG | + | chr1.3:42897401-42897420 | None:intergenic | 50.0% |
| !! | GGATCAGCTTCGAGTTTTGC+AGG | + | chr1.3:42897239-42897258 | None:intergenic | 50.0% |
| AAATGAACGGCATGAGGGGG+TGG | - | chr1.3:42896794-42896813 | MS.gene46444:CDS | 55.0% | |
| AATGAACGGCATGAGGGGGT+GGG | - | chr1.3:42896795-42896814 | MS.gene46444:CDS | 55.0% | |
| ATGCCAGTGACCTCCTAGAG+AGG | - | chr1.3:42895967-42895986 | MS.gene46444:CDS | 55.0% | |
| ATTCCACGTGTCTGGCACTC+CGG | + | chr1.3:42897438-42897457 | None:intergenic | 55.0% | |
| CACCAGTGGCTACAATCCTG+AGG | + | chr1.3:42897410-42897429 | None:intergenic | 55.0% | |
| CAGCTGCGTTCTTCGCTTTC+TGG | + | chr1.3:42897515-42897534 | None:intergenic | 55.0% | |
| CATTGCGACTCCTCTCTAGG+AGG | + | chr1.3:42895980-42895999 | None:intergenic | 55.0% | |
| CTCCTAGAGAGGAGTCGCAA+TGG | - | chr1.3:42895978-42895997 | MS.gene46444:CDS | 55.0% | |
| CTCCTCAGGATTGTAGCCAC+TGG | - | chr1.3:42897405-42897424 | MS.gene46444:CDS | 55.0% | |
| GTCCATTGCGACTCCTCTCT+AGG | + | chr1.3:42895983-42896002 | None:intergenic | 55.0% | |
| ! | ACTCCTCTCTAGGAGGTCAC+TGG | + | chr1.3:42895973-42895992 | None:intergenic | 55.0% |
| !! | AATCCTGAGGAGCATCGGGT+GGG | + | chr1.3:42897397-42897416 | None:intergenic | 55.0% |
| ATGAACGGCATGAGGGGGTG+GGG | - | chr1.3:42896796-42896815 | MS.gene46444:CDS | 60.0% | |
| GCACTCCGGGTAAACACCAG+TGG | + | chr1.3:42897424-42897443 | None:intergenic | 60.0% | |
| TTCCACGTGTCTGGCACTCC+GGG | + | chr1.3:42897437-42897456 | None:intergenic | 60.0% | |
| !! | ATCCTGAGGAGCATCGGGTG+GGG | + | chr1.3:42897396-42897415 | None:intergenic | 60.0% |
| !! | CAATCCTGAGGAGCATCGGG+TGG | + | chr1.3:42897398-42897417 | None:intergenic | 60.0% |
| AACCCCACCCGATGCTCCTC+AGG | - | chr1.3:42897391-42897410 | MS.gene46444:CDS | 65.0% | |
| TGAACGGCATGAGGGGGTGG+GGG | - | chr1.3:42896797-42896816 | MS.gene46444:CDS | 65.0% | |
| ! | TACCCGGAGTGCCAGACACG+TGG | - | chr1.3:42897432-42897451 | MS.gene46444:CDS | 65.0% |
| !! | GGAGCATCGGGTGGGGTTCC+TGG | + | chr1.3:42897389-42897408 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 42895962 | 42897535 | 42895962 | ID=MS.gene46444 |
| chr1.3 | mRNA | 42895962 | 42897535 | 42895962 | ID=MS.gene46444.t1;Parent=MS.gene46444 |
| chr1.3 | exon | 42897146 | 42897535 | 42897146 | ID=MS.gene46444.t1.exon1;Parent=MS.gene46444.t1 |
| chr1.3 | CDS | 42897146 | 42897535 | 42897146 | ID=cds.MS.gene46444.t1;Parent=MS.gene46444.t1 |
| chr1.3 | exon | 42896763 | 42896921 | 42896763 | ID=MS.gene46444.t1.exon2;Parent=MS.gene46444.t1 |
| chr1.3 | CDS | 42896763 | 42896921 | 42896763 | ID=cds.MS.gene46444.t1;Parent=MS.gene46444.t1 |
| chr1.3 | exon | 42895962 | 42896319 | 42895962 | ID=MS.gene46444.t1.exon3;Parent=MS.gene46444.t1 |
| chr1.3 | CDS | 42895962 | 42896319 | 42895962 | ID=cds.MS.gene46444.t1;Parent=MS.gene46444.t1 |
| Gene Sequence |
| Protein sequence |
