Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058448.t1 | XP_024631069.1 | 95.5 | 356 | 13 | 3 | 1 | 355 | 2 | 355 | 3.30E-167 | 597.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058448.t1 | Q6ZIK0 | 74.1 | 290 | 74 | 1 | 64 | 353 | 74 | 362 | 1.7e-127 | 457.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058448.t1 | B7FHY7 | 95.5 | 356 | 13 | 3 | 1 | 355 | 2 | 355 | 2.3e-167 | 597.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049757 | MS.gene058448 | 0.817361 | 3.43E-52 | -1.69E-46 |
| MS.gene050553 | MS.gene058448 | 0.835355 | 1.76E-56 | -1.69E-46 |
| MS.gene05080 | MS.gene058448 | 0.80306 | 4.17E-49 | -1.69E-46 |
| MS.gene051521 | MS.gene058448 | 0.815633 | 8.36E-52 | -1.69E-46 |
| MS.gene052469 | MS.gene058448 | 0.808498 | 3.01E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene058448 | 0.816843 | 4.49E-52 | -1.69E-46 |
| MS.gene055741 | MS.gene058448 | 0.824121 | 9.58E-54 | -1.69E-46 |
| MS.gene055744 | MS.gene058448 | 0.819903 | 9.10E-53 | -1.69E-46 |
| MS.gene056283 | MS.gene058448 | 0.851286 | 9.80E-61 | -1.69E-46 |
| MS.gene058448 | MS.gene059717 | 0.814425 | 1.55E-51 | -1.69E-46 |
| MS.gene058448 | MS.gene065675 | 0.81003 | 1.41E-50 | -1.69E-46 |
| MS.gene058448 | MS.gene066406 | 0.804093 | 2.55E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene070612 | 0.818662 | 1.74E-52 | -1.69E-46 |
| MS.gene058448 | MS.gene070968 | 0.803775 | 2.97E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene070979 | 0.80454 | 2.06E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene071307 | 0.812209 | 4.76E-51 | -1.69E-46 |
| MS.gene058448 | MS.gene071308 | 0.812378 | 4.37E-51 | -1.69E-46 |
| MS.gene058448 | MS.gene071791 | 0.813105 | 3.03E-51 | -1.69E-46 |
| MS.gene058448 | MS.gene072070 | 0.847525 | 1.09E-59 | -1.69E-46 |
| MS.gene058448 | MS.gene072125 | 0.801391 | 9.21E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene07312 | 0.811021 | 8.62E-51 | -1.69E-46 |
| MS.gene058448 | MS.gene07438 | 0.815118 | 1.09E-51 | -1.69E-46 |
| MS.gene058448 | MS.gene08083 | 0.828615 | 8.15E-55 | -1.69E-46 |
| MS.gene058448 | MS.gene09137 | 0.854553 | 1.14E-61 | -1.69E-46 |
| MS.gene058448 | MS.gene09570 | 0.824873 | 6.38E-54 | -1.69E-46 |
| MS.gene058448 | MS.gene09727 | 0.802289 | 6.02E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene09765 | 0.856294 | 3.55E-62 | -1.69E-46 |
| MS.gene058448 | MS.gene09777 | 0.827745 | 1.32E-54 | -1.69E-46 |
| MS.gene058448 | MS.gene09923 | 0.800852 | 1.19E-48 | -1.69E-46 |
| MS.gene058448 | MS.gene20267 | 0.840028 | 1.11E-57 | -1.69E-46 |
| MS.gene058448 | MS.gene21182 | 0.804574 | 2.02E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene22880 | 0.836342 | 9.90E-57 | -1.69E-46 |
| MS.gene058448 | MS.gene22896 | 0.845307 | 4.41E-59 | -1.69E-46 |
| MS.gene058448 | MS.gene22898 | 0.831928 | 1.26E-55 | -1.69E-46 |
| MS.gene058448 | MS.gene24857 | 0.801181 | 1.02E-48 | -1.69E-46 |
| MS.gene058448 | MS.gene25929 | 0.801285 | 9.68E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene27002 | 0.816687 | 4.86E-52 | -1.69E-46 |
| MS.gene058448 | MS.gene27264 | 0.8152 | 1.04E-51 | -1.69E-46 |
| MS.gene058448 | MS.gene28158 | 0.836451 | 9.29E-57 | -1.69E-46 |
| MS.gene058448 | MS.gene29363 | 0.820258 | 7.54E-53 | -1.69E-46 |
| MS.gene058448 | MS.gene29925 | 0.820531 | 6.53E-53 | -1.69E-46 |
| MS.gene058448 | MS.gene32713 | 0.811244 | 7.71E-51 | -1.69E-46 |
| MS.gene058448 | MS.gene33076 | 0.995538 | 2.83E-217 | -1.69E-46 |
| MS.gene058448 | MS.gene34393 | 0.832607 | 8.58E-56 | -1.69E-46 |
| MS.gene058448 | MS.gene34394 | 0.805783 | 1.13E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene37695 | 0.803447 | 3.47E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene45747 | 0.809989 | 1.44E-50 | -1.69E-46 |
| MS.gene058448 | MS.gene46444 | 0.800869 | 1.18E-48 | -1.69E-46 |
| MS.gene058448 | MS.gene46445 | 0.812517 | 4.07E-51 | -1.69E-46 |
| MS.gene058448 | MS.gene49929 | 0.81699 | 4.16E-52 | -1.69E-46 |
| MS.gene058448 | MS.gene55677 | 0.805654 | 1.20E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene57196 | 0.822574 | 2.20E-53 | -1.69E-46 |
| MS.gene058448 | MS.gene57602 | 0.801227 | 9.94E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene58012 | 0.804601 | 2.00E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene58060 | 0.805725 | 1.16E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene58062 | 0.804371 | 2.23E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene58153 | 0.8307 | 2.53E-55 | -1.69E-46 |
| MS.gene058448 | MS.gene58165 | 0.821791 | 3.35E-53 | -1.69E-46 |
| MS.gene058448 | MS.gene58280 | 0.811515 | 6.74E-51 | -1.69E-46 |
| MS.gene058448 | MS.gene58282 | 0.805303 | 1.42E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene61615 | 0.819189 | 1.32E-52 | -1.69E-46 |
| MS.gene058448 | MS.gene61919 | 0.819147 | 1.35E-52 | -1.69E-46 |
| MS.gene058448 | MS.gene63050 | 0.806789 | 6.94E-50 | -1.69E-46 |
| MS.gene058448 | MS.gene66611 | 0.803636 | 3.17E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene70297 | 0.830822 | 2.36E-55 | -1.69E-46 |
| MS.gene058448 | MS.gene70306 | 0.832925 | 7.15E-56 | -1.69E-46 |
| MS.gene058448 | MS.gene70327 | 0.806026 | 1.00E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene70461 | 0.862426 | 5.11E-64 | -1.69E-46 |
| MS.gene058448 | MS.gene71300 | 0.851214 | 1.03E-60 | -1.69E-46 |
| MS.gene058448 | MS.gene71621 | 0.809291 | 2.04E-50 | -1.69E-46 |
| MS.gene058448 | MS.gene71697 | 0.808617 | 2.84E-50 | -1.69E-46 |
| MS.gene058448 | MS.gene79883 | 0.802589 | 5.22E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene79903 | 0.804831 | 1.79E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene80172 | 0.829682 | 4.49E-55 | -1.69E-46 |
| MS.gene058448 | MS.gene84544 | 0.82287 | 1.88E-53 | -1.69E-46 |
| MS.gene058448 | MS.gene86914 | 0.817627 | 2.99E-52 | -1.69E-46 |
| MS.gene058448 | MS.gene90719 | 0.820434 | 6.87E-53 | -1.69E-46 |
| MS.gene058448 | MS.gene91392 | 0.815139 | 1.08E-51 | -1.69E-46 |
| MS.gene058448 | MS.gene99670 | 0.801518 | 8.67E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058448.t1 | MTR_1g014690 | 94.663 | 356 | 16 | 3 | 1 | 355 | 2 | 355 | 0.0 | 625 |
| MS.gene058448.t1 | MTR_1g014690 | 78.371 | 356 | 19 | 5 | 1 | 355 | 2 | 300 | 2.42e-168 | 471 |
| MS.gene058448.t1 | MTR_4g036005 | 70.199 | 151 | 42 | 3 | 67 | 216 | 16 | 164 | 1.26e-70 | 223 |
| MS.gene058448.t1 | MTR_3g032530 | 27.778 | 198 | 131 | 3 | 57 | 253 | 34 | 220 | 2.62e-18 | 85.1 |
| MS.gene058448.t1 | MTR_3g032530 | 27.807 | 187 | 123 | 3 | 68 | 253 | 2 | 177 | 7.73e-18 | 83.2 |
| MS.gene058448.t1 | MTR_3g114780 | 26.230 | 244 | 161 | 6 | 57 | 297 | 63 | 290 | 2.33e-16 | 79.7 |
| MS.gene058448.t1 | MTR_6g069600 | 34.906 | 106 | 67 | 1 | 130 | 235 | 290 | 393 | 4.38e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058448.t1 | AT1G64970 | 73.958 | 288 | 73 | 1 | 64 | 349 | 60 | 347 | 9.17e-160 | 451 |
| MS.gene058448.t1 | AT3G18000 | 37.391 | 115 | 70 | 1 | 130 | 244 | 284 | 396 | 3.17e-17 | 83.2 |
| MS.gene058448.t1 | AT1G73600 | 36.607 | 112 | 69 | 1 | 130 | 241 | 283 | 392 | 4.48e-17 | 82.8 |
| MS.gene058448.t1 | AT1G73600 | 36.607 | 112 | 69 | 1 | 130 | 241 | 297 | 406 | 4.90e-17 | 82.4 |
| MS.gene058448.t1 | AT1G48600 | 36.522 | 115 | 71 | 1 | 130 | 244 | 284 | 396 | 1.31e-16 | 81.3 |
| MS.gene058448.t1 | AT1G48600 | 36.522 | 115 | 71 | 1 | 130 | 244 | 268 | 380 | 1.34e-16 | 81.3 |
| MS.gene058448.t1 | AT5G13710 | 27.473 | 182 | 121 | 2 | 57 | 238 | 34 | 204 | 1.37e-16 | 80.1 |
| MS.gene058448.t1 | AT5G13710 | 27.473 | 182 | 121 | 2 | 57 | 238 | 34 | 204 | 1.37e-16 | 80.1 |
| MS.gene058448.t1 | AT1G20330 | 24.679 | 312 | 204 | 8 | 57 | 353 | 63 | 358 | 5.89e-16 | 78.6 |
| MS.gene058448.t1 | AT1G76090 | 24.839 | 310 | 204 | 9 | 57 | 352 | 63 | 357 | 8.46e-16 | 78.2 |
Find 93 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCTTTGTTGCTCCATTT+TGG | 0.111682 | 1.4:-7150513 | MS.gene058448:CDS |
| CTGGTATATGGGAGAATATT+TGG | 0.153591 | 1.4:-7154142 | MS.gene058448:CDS |
| AGGTACCTGGCCAAGAAATT+TGG | 0.197026 | 1.4:-7151826 | MS.gene058448:CDS |
| ACAACTTGCCCCAAATTTCT+TGG | 0.230657 | 1.4:+7151816 | None:intergenic |
| ACACCATGTTACTATTATTA+TGG | 0.233170 | 1.4:+7151058 | None:intergenic |
| ATGATGAGTCTTCTGGTATA+TGG | 0.237023 | 1.4:-7154154 | MS.gene058448:CDS |
| TGGTATATGGGAGAATATTT+GGG | 0.285510 | 1.4:-7154141 | MS.gene058448:CDS |
| CGTATCACTGCTGGCCAAAA+TGG | 0.295543 | 1.4:+7150499 | None:intergenic |
| GGTACCTGGCCAAGAAATTT+GGG | 0.302133 | 1.4:-7151825 | MS.gene058448:CDS |
| TAATAGTAACATGGTGTCAT+AGG | 0.305812 | 1.4:-7151052 | MS.gene058448:CDS |
| GCTATGCCATTGATGATAGA+AGG | 0.319042 | 1.4:-7149850 | MS.gene058448:CDS |
| GTTGATGTTGGGTGTGGCAT+AGG | 0.327476 | 1.4:-7151859 | MS.gene058448:CDS |
| TTGATGTTGGGTGTGGCATA+GGG | 0.339110 | 1.4:-7151858 | MS.gene058448:CDS |
| TGTTGTAGGGATTCTTCATT+CGG | 0.342059 | 1.4:+7151020 | None:intergenic |
| AGGCTTTCGACATGTGATAA+TGG | 0.352068 | 1.4:+7149801 | None:intergenic |
| CATTGATGATAGAAGGATTC+AGG | 0.353317 | 1.4:-7149843 | MS.gene058448:CDS |
| ACTTGAAACCATGTCCCTTC+AGG | 0.364722 | 1.4:-7150916 | MS.gene058448:intron |
| TTCAGCAGTAGAAGAAGAAA+AGG | 0.367968 | 1.4:-7154272 | MS.gene058448:CDS |
| TTAGCTCTTTCAGCTTGAAC+AGG | 0.369380 | 1.4:+7151775 | None:intergenic |
| ATTAGGACCTTTGGTTTGTT+AGG | 0.377795 | 1.4:+7151242 | None:intergenic |
| GTTGTAGGGATTCTTCATTC+GGG | 0.388840 | 1.4:+7151021 | None:intergenic |
| GATCCTTCTCCCATTGTTGT+AGG | 0.391437 | 1.4:+7151006 | None:intergenic |
| CCAACATCAACTACACTCTT+TGG | 0.405985 | 1.4:+7151871 | None:intergenic |
| TTTCTTCTTCTACTGCTGAA+TGG | 0.407358 | 1.4:+7154275 | None:intergenic |
| ACTAGATCAAACTGGCCGTC+AGG | 0.424197 | 1.4:+7151293 | None:intergenic |
| GTTAGCACGGGTAGCAGCAC+CGG | 0.429524 | 1.4:-7151087 | MS.gene058448:CDS |
| GAAACAGAAACAGTAGAATC+AGG | 0.439311 | 1.4:+7154089 | None:intergenic |
| TGATGAGTCTTCTGGTATAT+GGG | 0.439939 | 1.4:-7154153 | MS.gene058448:CDS |
| GCTCAGATGATCCATCAAAA+TGG | 0.445713 | 1.4:-7151894 | MS.gene058448:intron |
| TGAAGAATCCCTACAACAAT+GGG | 0.467250 | 1.4:-7151015 | MS.gene058448:CDS |
| ATCCTTCTCCCATTGTTGTA+GGG | 0.488458 | 1.4:+7151007 | None:intergenic |
| TGCTCAAGGATTAGCTGATA+AGG | 0.488710 | 1.4:-7151740 | MS.gene058448:intron |
| CTGAATCCTTCTATCATCAA+TGG | 0.489050 | 1.4:+7149844 | None:intergenic |
| CTTACCACTTCGCAAGATTG+AGG | 0.489090 | 1.4:+7150450 | None:intergenic |
| GAAAGAAGCGATGGTGGTAA+TGG | 0.494033 | 1.4:-7154222 | MS.gene058448:CDS |
| AGTTTGTTGGTGAGTTAGCA+CGG | 0.502667 | 1.4:-7151100 | MS.gene058448:CDS |
| TTGCCCCAAATTTCTTGGCC+AGG | 0.505728 | 1.4:+7151821 | None:intergenic |
| TGGGGTGATCATATGCATCA+TGG | 0.511664 | 1.4:-7154122 | MS.gene058448:CDS |
| ATGAAGAATCCCTACAACAA+TGG | 0.511742 | 1.4:-7151016 | MS.gene058448:CDS |
| AGAGAAGAAGAAACTTCAGT+TGG | 0.512900 | 1.4:-7154192 | MS.gene058448:CDS |
| TTGACCACACTAGATCAAAC+TGG | 0.513141 | 1.4:+7151285 | None:intergenic |
| AGGGTCATTGCGTCTATCAA+TGG | 0.514463 | 1.4:-7154252 | MS.gene058448:CDS |
| AATGCTCTGGCTGCTGCTCA+AGG | 0.516953 | 1.4:-7151754 | MS.gene058448:CDS |
| CGTTCAGCATTAACATGGAA+GGG | 0.521906 | 1.4:-7150478 | MS.gene058448:CDS |
| AGGACATCAAATCAGCAGAT+TGG | 0.524852 | 1.4:-7150537 | MS.gene058448:CDS |
| AATAGTAACATGGTGTCATA+GGG | 0.525266 | 1.4:-7151051 | MS.gene058448:CDS |
| TCAAACTGGCCGTCAGGGAA+TGG | 0.527365 | 1.4:+7151299 | None:intergenic |
| GATGTTGGGTGTGGCATAGG+GGG | 0.529490 | 1.4:-7151856 | MS.gene058448:CDS |
| CCAAAGAGTGTAGTTGATGT+TGG | 0.533283 | 1.4:-7151871 | MS.gene058448:CDS |
| TGGTACAGTAGTAGTAATGA+TGG | 0.537552 | 1.4:+7154295 | None:intergenic |
| TGATGTTGGGTGTGGCATAG+GGG | 0.537744 | 1.4:-7151857 | MS.gene058448:CDS |
| AGCTGAAAGAGCTAATGCTC+TGG | 0.537978 | 1.4:-7151767 | MS.gene058448:CDS |
| GAGAAGAAGAAACTTCAGTT+GGG | 0.540045 | 1.4:-7154191 | MS.gene058448:CDS |
| CAAAGAGTGTAGTTGATGTT+GGG | 0.545229 | 1.4:-7151870 | MS.gene058448:CDS |
| AAATTTGGGGCAAGTTGTGT+AGG | 0.545845 | 1.4:-7151811 | MS.gene058448:CDS |
| TCAGCAGTTGAGCACCACTC+TGG | 0.547647 | 1.4:+7150951 | None:intergenic |
| GGCCAAAATGGAGCAACAAA+GGG | 0.551098 | 1.4:+7150511 | None:intergenic |
| GTTTGATCTAGTGTGGTCAA+TGG | 0.552518 | 1.4:-7151282 | MS.gene058448:CDS |
| TGGCCAAAATGGAGCAACAA+AGG | 0.554035 | 1.4:+7150510 | None:intergenic |
| TTAGCACGGGTAGCAGCACC+GGG | 0.557174 | 1.4:-7151086 | MS.gene058448:CDS |
| ACGTTCAGCATTAACATGGA+AGG | 0.559901 | 1.4:-7150479 | MS.gene058448:CDS |
| ACTATTATTATGGTGCCACC+CGG | 0.564921 | 1.4:+7151068 | None:intergenic |
| CTAGATCAAACTGGCCGTCA+GGG | 0.569043 | 1.4:+7151294 | None:intergenic |
| ATTAACTACCTGAAGGGACA+TGG | 0.576544 | 1.4:+7150908 | None:intergenic |
| ATCCCTACAACAATGGGAGA+AGG | 0.577935 | 1.4:-7151009 | MS.gene058448:CDS |
| TCAGCAGTAGAAGAAGAAAA+GGG | 0.587307 | 1.4:-7154271 | MS.gene058448:CDS |
| AATGCTGAACGTATCACTGC+TGG | 0.591367 | 1.4:+7150490 | None:intergenic |
| GGCGGCGGTGAAAGAAGCGA+TGG | 0.597232 | 1.4:-7154231 | MS.gene058448:CDS |
| TAGCTCTTTCAGCTTGAACA+GGG | 0.597928 | 1.4:+7151776 | None:intergenic |
| TAGAGCGTCAGCAACTTGAA+AGG | 0.605316 | 1.4:+7151328 | None:intergenic |
| AGTGTAGTTGATGTTGGGTG+TGG | 0.612189 | 1.4:-7151865 | MS.gene058448:CDS |
| ATATTAATTAACTACCTGAA+GGG | 0.613275 | 1.4:+7150902 | None:intergenic |
| TCGAAAGCCTGAAAACGCAG+AGG | 0.616363 | 1.4:-7149788 | MS.gene058448:CDS |
| GTTTGTTGGTGAGTTAGCAC+GGG | 0.616520 | 1.4:-7151099 | MS.gene058448:CDS |
| ATTGCGTCTATCAATGGCGG+CGG | 0.617943 | 1.4:-7154246 | MS.gene058448:CDS |
| GGCGGTGAAAGAAGCGATGG+TGG | 0.621331 | 1.4:-7154228 | MS.gene058448:CDS |
| TTGTAGGGATTCTTCATTCG+GGG | 0.621575 | 1.4:+7151022 | None:intergenic |
| TGATACGTTCAGCATTAACA+TGG | 0.622052 | 1.4:-7150483 | MS.gene058448:CDS |
| GGTATATGGGAGAATATTTG+GGG | 0.625495 | 1.4:-7154140 | MS.gene058448:CDS |
| TTCACCTCAATCTTGCGAAG+TGG | 0.629679 | 1.4:-7150454 | MS.gene058448:intron |
| ATGGTATCTCTGTGGTGCTG+AGG | 0.633262 | 1.4:+7154314 | None:intergenic |
| GATGATAGAAGGATTCAGGA+AGG | 0.633554 | 1.4:-7149839 | MS.gene058448:CDS |
| ATGATAGAAGGATTCAGGAA+GGG | 0.634567 | 1.4:-7149838 | MS.gene058448:CDS |
| ACGGCCAGTTTGATCTAGTG+TGG | 0.645283 | 1.4:-7151289 | MS.gene058448:CDS |
| GTCATTGCGTCTATCAATGG+CGG | 0.656657 | 1.4:-7154249 | MS.gene058448:CDS |
| GCATATGCCTAACAAACCAA+AGG | 0.660215 | 1.4:-7151249 | MS.gene058448:intron |
| CGAAAGCCTGAAAACGCAGA+GGG | 0.662434 | 1.4:-7149787 | MS.gene058448:CDS |
| GTACCTGGCCAAGAAATTTG+GGG | 0.663725 | 1.4:-7151824 | MS.gene058448:CDS |
| GCACCATAATAATAGTAACA+TGG | 0.689337 | 1.4:-7151061 | MS.gene058448:CDS |
| CTAGAACAACCATTCCCTGA+CGG | 0.703190 | 1.4:-7151308 | MS.gene058448:CDS |
| GCACGGGTAGCAGCACCGGG+TGG | 0.705737 | 1.4:-7151083 | MS.gene058448:CDS |
| CTAGTGTGGTCAATGGAGAG+CGG | 0.706985 | 1.4:-7151275 | MS.gene058448:CDS |
| TAGTAATGATGGTATCTCTG+TGG | 0.733690 | 1.4:+7154306 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTAAAAAAATAGATGATAA+AGG | + | chr1.4:7152456-7152475 | None:intergenic | 15.0% |
| !!! | AAACAATTTTTGTATGAAAT+AGG | + | chr1.4:7153027-7153046 | None:intergenic | 15.0% |
| !!! | AATCTTCATTTTTTAATCTA+AGG | + | chr1.4:7150708-7150727 | None:intergenic | 15.0% |
| !!! | TTTTGAACAATTTCTTATAT+TGG | - | chr1.4:7153392-7153411 | MS.gene058448:intron | 15.0% |
| !!! | TTTTTTTTTTCATTTTTTGC+TGG | - | chr1.4:7152171-7152190 | MS.gene058448:intron | 15.0% |
| !! | AATCATTAATTTATCACGTT+TGG | - | chr1.4:7150731-7150750 | MS.gene058448:intron | 20.0% |
| !! | ACATTAGTGTTTATAATGAT+AGG | - | chr1.4:7150637-7150656 | MS.gene058448:intron | 20.0% |
| !! | ATATTAATTAACTACCTGAA+GGG | + | chr1.4:7153249-7153268 | None:intergenic | 20.0% |
| !! | ATCATTAATTTATCACGTTT+GGG | - | chr1.4:7150732-7150751 | MS.gene058448:intron | 20.0% |
| !! | CAATAAACATATTTAACTCT+GGG | + | chr1.4:7151098-7151117 | None:intergenic | 20.0% |
| !! | GGAGTATATAACATTAATTT+GGG | + | chr1.4:7154032-7154051 | None:intergenic | 20.0% |
| !! | TATATTAATTAACTACCTGA+AGG | + | chr1.4:7153250-7153269 | None:intergenic | 20.0% |
| !! | TATTGATATGGAAAAACTTA+AGG | - | chr1.4:7153469-7153488 | MS.gene058448:intron | 20.0% |
| !! | TCAAATAATTCAATCAAATC+AGG | + | chr1.4:7150495-7150514 | None:intergenic | 20.0% |
| !! | TGAACACTTATATTAGTATT+TGG | - | chr1.4:7153344-7153363 | MS.gene058448:intron | 20.0% |
| !! | TGGAGTATATAACATTAATT+TGG | + | chr1.4:7154033-7154052 | None:intergenic | 20.0% |
| !! | TTTCCATATCAATAAGTTTA+CGG | + | chr1.4:7153463-7153482 | None:intergenic | 20.0% |
| !!! | AAACTATCTTTGAAAACTTA+TGG | + | chr1.4:7150566-7150585 | None:intergenic | 20.0% |
| !!! | TAAATTGATAATGATCTTGT+TGG | - | chr1.4:7154202-7154221 | MS.gene058448:CDS | 20.0% |
| !!! | TATCGTAATTTTGATACATT+TGG | + | chr1.4:7150830-7150849 | None:intergenic | 20.0% |
| !!! | TATTGTTAGTATTTTGTTGA+GGG | - | chr1.4:7153878-7153897 | MS.gene058448:intron | 20.0% |
| !!! | TTTGCTGGTAAATTTTATTT+TGG | - | chr1.4:7152186-7152205 | MS.gene058448:intron | 20.0% |
| ! | ACACCATGTTACTATTATTA+TGG | + | chr1.4:7153093-7153112 | None:intergenic | 25.0% |
| ! | ATATTTAAACCGTGTAACTT+GGG | + | chr1.4:7151367-7151386 | None:intergenic | 25.0% |
| ! | ATTAAGATGTATATCCAAAC+AGG | - | chr1.4:7150681-7150700 | MS.gene058448:intron | 25.0% |
| ! | ATTATAATGAATCTCACCAA+GGG | - | chr1.4:7152514-7152533 | MS.gene058448:intron | 25.0% |
| ! | ATTTCACACATATTCAGAAA+AGG | + | chr1.4:7154139-7154158 | None:intergenic | 25.0% |
| ! | CAAAAATTGTTTCAGTTTGT+TGG | - | chr1.4:7153035-7153054 | MS.gene058448:intron | 25.0% |
| ! | CCAATAAACATATTTAACTC+TGG | + | chr1.4:7151099-7151118 | None:intergenic | 25.0% |
| ! | CCAGAGTTAAATATGTTTAT+TGG | - | chr1.4:7151096-7151115 | MS.gene058448:CDS | 25.0% |
| ! | GTCTTATGTTAGTAATTTCA+TGG | + | chr1.4:7150953-7150972 | None:intergenic | 25.0% |
| ! | GTGTCTTTCATTAATCAATT+TGG | - | chr1.4:7150926-7150945 | MS.gene058448:CDS | 25.0% |
| ! | TAACCGTAAACTTATTGATA+TGG | - | chr1.4:7153457-7153476 | MS.gene058448:intron | 25.0% |
| ! | TATCAATTTATGTACTCCTT+TGG | + | chr1.4:7154192-7154211 | None:intergenic | 25.0% |
| ! | TATTATAATGAATCTCACCA+AGG | - | chr1.4:7152513-7152532 | MS.gene058448:intron | 25.0% |
| ! | TCATTAATTTATCACGTTTG+GGG | - | chr1.4:7150733-7150752 | MS.gene058448:intron | 25.0% |
| ! | TTAAGATGTATATCCAAACA+GGG | - | chr1.4:7150682-7150701 | MS.gene058448:intron | 25.0% |
| ! | TTACACGGTTTAAATATCTT+GGG | - | chr1.4:7151370-7151389 | MS.gene058448:intron | 25.0% |
| !! | AAAAAAGAGAGCATATATGT+AGG | - | chr1.4:7150468-7150487 | MS.gene058448:CDS | 25.0% |
| !! | AAAAAGAGAGCATATATGTA+GGG | - | chr1.4:7150469-7150488 | MS.gene058448:CDS | 25.0% |
| !! | ATATGATACGTGTTTTCAAT+CGG | + | chr1.4:7152600-7152619 | None:intergenic | 25.0% |
| !! | GTATTGTTAGTATTTTGTTG+AGG | - | chr1.4:7153877-7153896 | MS.gene058448:intron | 25.0% |
| !!! | AAATTTTATTTTGGTTGGAC+TGG | - | chr1.4:7152195-7152214 | MS.gene058448:intron | 25.0% |
| !!! | AATCATTTTAGTCCCTAAAT+GGG | + | chr1.4:7151275-7151294 | None:intergenic | 25.0% |
| !!! | ATTGGAGTAAATTGTCATTT+TGG | - | chr1.4:7151114-7151133 | MS.gene058448:intron | 25.0% |
| !!! | CTGGTAAATTTTATTTTGGT+TGG | - | chr1.4:7152190-7152209 | MS.gene058448:intron | 25.0% |
| !!! | TAATCATTTTAGTCCCTAAA+TGG | + | chr1.4:7151276-7151295 | None:intergenic | 25.0% |
| !!! | TCAAAGAGTTTTGAATCATA+CGG | + | chr1.4:7150106-7150125 | None:intergenic | 25.0% |
| !!! | TCTTTGGTTAGTTTTGTTAT+CGG | - | chr1.4:7150901-7150920 | MS.gene058448:intron | 25.0% |
| !!! | TTTTGGTCTTTAAATGTGTA+AGG | + | chr1.4:7151030-7151049 | None:intergenic | 25.0% |
| AACCATTAGAAAGGATTTAG+AGG | - | chr1.4:7151848-7151867 | MS.gene058448:CDS | 30.0% | |
| AACCTATGAGTTAAATTGTC+AGG | - | chr1.4:7150765-7150784 | MS.gene058448:intron | 30.0% | |
| AACCTGACAATTTAACTCAT+AGG | + | chr1.4:7150770-7150789 | None:intergenic | 30.0% | |
| AGCTGAAAGGAAAGTTATAT+CGG | - | chr1.4:7151508-7151527 | MS.gene058448:intron | 30.0% | |
| ATACAAGTTCTTAATACCCT+TGG | + | chr1.4:7152533-7152552 | None:intergenic | 30.0% | |
| ATACATGCATCAATAACAAC+AGG | + | chr1.4:7152234-7152253 | None:intergenic | 30.0% | |
| ATGAGTTAAATTGTCAGGTT+TGG | - | chr1.4:7150770-7150789 | MS.gene058448:intron | 30.0% | |
| CATTAGAGAAACCATTAGAA+AGG | - | chr1.4:7151839-7151858 | MS.gene058448:CDS | 30.0% | |
| CCAGTATGCATTTATGATAA+TGG | - | chr1.4:7154050-7154069 | MS.gene058448:CDS | 30.0% | |
| CCATTATCATAAATGCATAC+TGG | + | chr1.4:7154053-7154072 | None:intergenic | 30.0% | |
| CTTTCTAATGGTTTCTCTAA+TGG | + | chr1.4:7151841-7151860 | None:intergenic | 30.0% | |
| GAATAGAATCTACTCATATG+TGG | - | chr1.4:7152554-7152573 | MS.gene058448:intron | 30.0% | |
| GAGATTGATTACAACTTTAC+TGG | + | chr1.4:7152994-7153013 | None:intergenic | 30.0% | |
| GATATTTAAACCGTGTAACT+TGG | + | chr1.4:7151368-7151387 | None:intergenic | 30.0% | |
| GCACCATAATAATAGTAACA+TGG | - | chr1.4:7153087-7153106 | MS.gene058448:intron | 30.0% | |
| GCAGGTCTAAAAACTATAAA+AGG | - | chr1.4:7154268-7154287 | MS.gene058448:CDS | 30.0% | |
| GCATCAAAATTACAAACCAA+AGG | - | chr1.4:7151177-7151196 | MS.gene058448:intron | 30.0% | |
| GGACATAGTCAAATTCAAAA+CGG | + | chr1.4:7150262-7150281 | None:intergenic | 30.0% | |
| GTGATTGAATATAACCACAT+AGG | - | chr1.4:7152009-7152028 | MS.gene058448:intron | 30.0% | |
| GTTACACGGTTTAAATATCT+TGG | - | chr1.4:7151369-7151388 | MS.gene058448:intron | 30.0% | |
| TAAATCATCGTATTCAAGCT+GGG | - | chr1.4:7151430-7151449 | MS.gene058448:intron | 30.0% | |
| TAATGCAACACGGATATATA+AGG | + | chr1.4:7153971-7153990 | None:intergenic | 30.0% | |
| TAGAAGAGTAGATCAAATAG+AGG | - | chr1.4:7151776-7151795 | MS.gene058448:CDS | 30.0% | |
| TATTTAAACCGTGTAACTTG+GGG | + | chr1.4:7151366-7151385 | None:intergenic | 30.0% | |
| TCATATAAACCATCAACTGT+TGG | + | chr1.4:7154076-7154095 | None:intergenic | 30.0% | |
| TGCAACTATCTCATTTGAAT+TGG | + | chr1.4:7153505-7153524 | None:intergenic | 30.0% | |
| TGGTATATGGGAGAATATTT+GGG | - | chr1.4:7150007-7150026 | MS.gene058448:intron | 30.0% | |
| TGTTTGATTGCTATCTATCT+AGG | - | chr1.4:7153591-7153610 | MS.gene058448:intron | 30.0% | |
| TTGATCTACTCTTCTAACAA+CGG | + | chr1.4:7151772-7151791 | None:intergenic | 30.0% | |
| TTGCATTGCATAAACAGTAA+AGG | + | chr1.4:7152785-7152804 | None:intergenic | 30.0% | |
| ! | ATTCATTTTATCTTCCAGAG+TGG | - | chr1.4:7153183-7153202 | MS.gene058448:intron | 30.0% |
| ! | GTTTCTCTAATGGTTTTCTT+AGG | + | chr1.4:7151831-7151850 | None:intergenic | 30.0% |
| ! | TTGGATCCAAATATGGTTTT+TGG | - | chr1.4:7151879-7151898 | MS.gene058448:CDS | 30.0% |
| ! | TTTTCCTAAACAACAAATGC+TGG | - | chr1.4:7153855-7153874 | MS.gene058448:intron | 30.0% |
| !! | AATACCAGCATTTGTTGTTT+AGG | + | chr1.4:7153862-7153881 | None:intergenic | 30.0% |
| !! | AATAGTAACATGGTGTCATA+GGG | - | chr1.4:7153097-7153116 | MS.gene058448:intron | 30.0% |
| !! | TAATAGTAACATGGTGTCAT+AGG | - | chr1.4:7153096-7153115 | MS.gene058448:intron | 30.0% |
| !! | TAGAAAAGTTGGTGGAAAAT+AGG | - | chr1.4:7151706-7151725 | MS.gene058448:intron | 30.0% |
| !!! | TCATTTTTGTTATTGTGTGC+AGG | - | chr1.4:7154250-7154269 | MS.gene058448:CDS | 30.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | + | chr1.4:7151504-7151523 | None:intergenic | 35.0% | |
| ACATCTTCAATCTGATGTCT+TGG | - | chr1.4:7152054-7152073 | MS.gene058448:intron | 35.0% | |
| ACCAAACATGTAATGCAACA+CGG | + | chr1.4:7153981-7154000 | None:intergenic | 35.0% | |
| ACCTATAGTAGAAAAGTTGG+TGG | - | chr1.4:7151698-7151717 | MS.gene058448:intron | 35.0% | |
| AGACTAGATAGGATAGGATT+AGG | - | chr1.4:7151643-7151662 | MS.gene058448:intron | 35.0% | |
| AGAGAAGAAGAAACTTCAGT+TGG | - | chr1.4:7149956-7149975 | MS.gene058448:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | - | chr1.4:7151695-7151714 | MS.gene058448:intron | 35.0% | |
| AGGAATGATAAGGAGATTGA+GGG | + | chr1.4:7153915-7153934 | None:intergenic | 35.0% | |
| AGTTTAGGAGAGGAATGATA+AGG | + | chr1.4:7153925-7153944 | None:intergenic | 35.0% | |
| ATATCATACCCCAAGTTACA+CGG | - | chr1.4:7151355-7151374 | MS.gene058448:intron | 35.0% | |
| ATCAATGTCAGTATCGTGTT+TGG | - | chr1.4:7152709-7152728 | MS.gene058448:intron | 35.0% | |
| ATGAAGAATCCCTACAACAA+TGG | - | chr1.4:7153132-7153151 | MS.gene058448:intron | 35.0% | |
| ATGACGCCAAAAACCATATT+TGG | + | chr1.4:7151888-7151907 | None:intergenic | 35.0% | |
| ATGATAGAAGGATTCAGGAA+GGG | - | chr1.4:7154310-7154329 | MS.gene058448:CDS | 35.0% | |
| ATGATGAGTCTTCTGGTATA+TGG | - | chr1.4:7149994-7150013 | MS.gene058448:intron | 35.0% | |
| ATGCAATGCAATGCAATTGT+AGG | - | chr1.4:7152794-7152813 | MS.gene058448:intron | 35.0% | |
| CATCAGATTGAAGATGTAGT+TGG | + | chr1.4:7152051-7152070 | None:intergenic | 35.0% | |
| CTATCTGAACAATCCATTAC+TGG | + | chr1.4:7150330-7150349 | None:intergenic | 35.0% | |
| CTGAATCCTTCTATCATCAA+TGG | + | chr1.4:7154307-7154326 | None:intergenic | 35.0% | |
| CTGGTATATGGGAGAATATT+TGG | - | chr1.4:7150006-7150025 | MS.gene058448:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | chr1.4:7151720-7151739 | MS.gene058448:intron | 35.0% | |
| GAAACAGAAACAGTAGAATC+AGG | + | chr1.4:7150062-7150081 | None:intergenic | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | + | chr1.4:7151853-7151872 | None:intergenic | 35.0% | |
| GAGAAGAAGAAACTTCAGTT+GGG | - | chr1.4:7149957-7149976 | MS.gene058448:intron | 35.0% | |
| GATGAGTGATAAGACTAGAT+AGG | - | chr1.4:7151632-7151651 | MS.gene058448:intron | 35.0% | |
| GCAAAAGAAATTAGGACCTT+TGG | + | chr1.4:7152918-7152937 | None:intergenic | 35.0% | |
| GGTATATGGGAGAATATTTG+GGG | - | chr1.4:7150008-7150027 | MS.gene058448:intron | 35.0% | |
| GTAAATCATCGTATTCAAGC+TGG | - | chr1.4:7151429-7151448 | MS.gene058448:intron | 35.0% | |
| GTCTTGTATGTGTCTTTCTT+TGG | - | chr1.4:7150885-7150904 | MS.gene058448:intron | 35.0% | |
| GTGATAAGACTAGATAGGAT+AGG | - | chr1.4:7151637-7151656 | MS.gene058448:intron | 35.0% | |
| TAGTAATGATGGTATCTCTG+TGG | + | chr1.4:7149845-7149864 | None:intergenic | 35.0% | |
| TCACTATGTGCTATCAAGTT+AGG | - | chr1.4:7153557-7153576 | MS.gene058448:intron | 35.0% | |
| TCAGCAGTAGAAGAAGAAAA+GGG | - | chr1.4:7149877-7149896 | MS.gene058448:CDS | 35.0% | |
| TCGATTGGTGAAACAATTCT+TGG | - | chr1.4:7150358-7150377 | MS.gene058448:intron | 35.0% | |
| TGAAGAATCCCTACAACAAT+GGG | - | chr1.4:7153133-7153152 | MS.gene058448:intron | 35.0% | |
| TGATACGTTCAGCATTAACA+TGG | - | chr1.4:7153665-7153684 | MS.gene058448:intron | 35.0% | |
| TGATGAGTCTTCTGGTATAT+GGG | - | chr1.4:7149995-7150014 | MS.gene058448:intron | 35.0% | |
| TGGTACAGTAGTAGTAATGA+TGG | + | chr1.4:7149856-7149875 | None:intergenic | 35.0% | |
| TGGTGTTTGTGTCTTTATGT+CGG | - | chr1.4:7152729-7152748 | MS.gene058448:intron | 35.0% | |
| TGTCCAAATCAAGTTCACTA+CGG | - | chr1.4:7150277-7150296 | MS.gene058448:intron | 35.0% | |
| TGTTGTAGGGATTCTTCATT+CGG | + | chr1.4:7153131-7153150 | None:intergenic | 35.0% | |
| TTAATGAGTTCCACCAGTAA+TGG | - | chr1.4:7150314-7150333 | MS.gene058448:intron | 35.0% | |
| TTCAGCAGTAGAAGAAGAAA+AGG | - | chr1.4:7149876-7149895 | MS.gene058448:CDS | 35.0% | |
| TTTCTTCTTCTACTGCTGAA+TGG | + | chr1.4:7149876-7149895 | None:intergenic | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | - | chr1.4:7151495-7151514 | MS.gene058448:intron | 35.0% |
| ! | AAGACTAGTGATTTGAGACA+AGG | + | chr1.4:7153757-7153776 | None:intergenic | 35.0% |
| ! | AGACTAGTGATTTGAGACAA+GGG | + | chr1.4:7153756-7153775 | None:intergenic | 35.0% |
| ! | CAAAGAGTGTAGTTGATGTT+GGG | - | chr1.4:7152278-7152297 | MS.gene058448:intron | 35.0% |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr1.4:7151872-7151891 | MS.gene058448:CDS | 35.0% |
| ! | CATTGATGATAGAAGGATTC+AGG | - | chr1.4:7154305-7154324 | MS.gene058448:CDS | 35.0% |
| ! | TCCACCAACTTTTCTACTAT+AGG | + | chr1.4:7151702-7151721 | None:intergenic | 35.0% |
| ! | TGTTAGTATTTTGTTGAGGG+TGG | - | chr1.4:7153881-7153900 | MS.gene058448:intron | 35.0% |
| !! | ATTAGGACCTTTGGTTTGTT+AGG | + | chr1.4:7152909-7152928 | None:intergenic | 35.0% |
| !! | CTTGGTGCTACATAGAAAAA+AGG | - | chr1.4:7152072-7152091 | MS.gene058448:intron | 35.0% |
| !! | GAGTTTTATGATGAGTCTTC+TGG | - | chr1.4:7149987-7150006 | MS.gene058448:intron | 35.0% |
| !! | TCTCCGTCATTTTGTACTAT+GGG | + | chr1.4:7151396-7151415 | None:intergenic | 35.0% |
| !! | TTCTCCGTCATTTTGTACTA+TGG | + | chr1.4:7151397-7151416 | None:intergenic | 35.0% |
| !! | TTTTAATCTAAGGCCCTGTT+TGG | + | chr1.4:7150698-7150717 | None:intergenic | 35.0% |
| !!! | CTCTGCTTCATAGGTTTTTT+TGG | + | chr1.4:7151047-7151066 | None:intergenic | 35.0% |
| AAAGCTATGAAGCAGAGACA+TGG | - | chr1.4:7151299-7151318 | MS.gene058448:CDS | 40.0% | |
| ACAACTTGCCCCAAATTTCT+TGG | + | chr1.4:7152335-7152354 | None:intergenic | 40.0% | |
| ACACCATTAGAGAAAGAGTG+GGG | - | chr1.4:7151670-7151689 | MS.gene058448:intron | 40.0% | |
| ACGTGACACTCAATATAGGA+CGG | + | chr1.4:7153792-7153811 | None:intergenic | 40.0% | |
| ACGTTCAGCATTAACATGGA+AGG | - | chr1.4:7153669-7153688 | MS.gene058448:intron | 40.0% | |
| AGATCAAATAGAGGAGAGTC+AGG | - | chr1.4:7151785-7151804 | MS.gene058448:CDS | 40.0% | |
| AGGACATCAAATCAGCAGAT+TGG | - | chr1.4:7153611-7153630 | MS.gene058448:intron | 40.0% | |
| AGGCTTTCGACATGTGATAA+TGG | + | chr1.4:7154350-7154369 | None:intergenic | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | - | chr1.4:7151801-7151820 | MS.gene058448:CDS | 40.0% | |
| AGTCGCTGTCATTATAGTCT+CGG | - | chr1.4:7151151-7151170 | MS.gene058448:intron | 40.0% | |
| ATCCTTCTCCCATTGTTGTA+GGG | + | chr1.4:7153144-7153163 | None:intergenic | 40.0% | |
| ATCGGCAATGTTGTATGGTA+CGG | - | chr1.4:7151542-7151561 | MS.gene058448:intron | 40.0% | |
| ATTAACTACCTGAAGGGACA+TGG | + | chr1.4:7153243-7153262 | None:intergenic | 40.0% | |
| CAAATCAAGTTCACTACGGT+TGG | - | chr1.4:7150281-7150300 | MS.gene058448:intron | 40.0% | |
| CAACCGTAGTGAACTTGATT+TGG | + | chr1.4:7150283-7150302 | None:intergenic | 40.0% | |
| CAGATAGACTTGAGTTCGAT+TGG | - | chr1.4:7150343-7150362 | MS.gene058448:intron | 40.0% | |
| CCAACATCAACTACACTCTT+TGG | + | chr1.4:7152280-7152299 | None:intergenic | 40.0% | |
| CGTTCAGCATTAACATGGAA+GGG | - | chr1.4:7153670-7153689 | MS.gene058448:intron | 40.0% | |
| GACACCATTAGAGAAAGAGT+GGG | - | chr1.4:7151669-7151688 | MS.gene058448:intron | 40.0% | |
| GACATTTCCTCACCCATTTA+GGG | - | chr1.4:7151260-7151279 | MS.gene058448:CDS | 40.0% | |
| GAGGAATGATAAGGAGATTG+AGG | + | chr1.4:7153916-7153935 | None:intergenic | 40.0% | |
| GATGATAGAAGGATTCAGGA+AGG | - | chr1.4:7154309-7154328 | MS.gene058448:CDS | 40.0% | |
| GCAACACGGATATATAAGGT+TGG | + | chr1.4:7153967-7153986 | None:intergenic | 40.0% | |
| GCATATGCCTAACAAACCAA+AGG | - | chr1.4:7152899-7152918 | MS.gene058448:intron | 40.0% | |
| GCTAACGTGACACTCAATAT+AGG | + | chr1.4:7153796-7153815 | None:intergenic | 40.0% | |
| GCTAGACAGTAAGAAAAGTC+TGG | + | chr1.4:7150384-7150403 | None:intergenic | 40.0% | |
| GCTCAGATGATCCATCAAAA+TGG | - | chr1.4:7152254-7152273 | MS.gene058448:intron | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | - | chr1.4:7151860-7151879 | MS.gene058448:CDS | 40.0% | |
| GTGAGACGGCAAAAGAAATT+AGG | + | chr1.4:7152926-7152945 | None:intergenic | 40.0% | |
| GTTGTAGGGATTCTTCATTC+GGG | + | chr1.4:7153130-7153149 | None:intergenic | 40.0% | |
| GTTTGATCTAGTGTGGTCAA+TGG | - | chr1.4:7152866-7152885 | MS.gene058448:intron | 40.0% | |
| TAGCAGAACCCATTATCGAA+GGG | - | chr1.4:7150416-7150435 | MS.gene058448:intron | 40.0% | |
| TAGCTCTTTCAGCTTGAACA+GGG | + | chr1.4:7152375-7152394 | None:intergenic | 40.0% | |
| TCCGTGTTGCATTACATGTT+TGG | - | chr1.4:7153977-7153996 | MS.gene058448:intron | 40.0% | |
| TCTGAACAATCCATTACTGG+TGG | + | chr1.4:7150327-7150346 | None:intergenic | 40.0% | |
| TGACACCATTAGAGAAAGAG+TGG | - | chr1.4:7151668-7151687 | MS.gene058448:intron | 40.0% | |
| TGACATTTCCTCACCCATTT+AGG | - | chr1.4:7151259-7151278 | MS.gene058448:CDS | 40.0% | |
| TGCGTTAACCCTTCGATAAT+GGG | + | chr1.4:7150427-7150446 | None:intergenic | 40.0% | |
| TGGTGGAAAATAGGCTTAGA+TGG | - | chr1.4:7151715-7151734 | MS.gene058448:intron | 40.0% | |
| TTACACGACATCAACCTATG+TGG | + | chr1.4:7152026-7152045 | None:intergenic | 40.0% | |
| TTAGCAGAACCCATTATCGA+AGG | - | chr1.4:7150415-7150434 | MS.gene058448:intron | 40.0% | |
| TTGACCACACTAGATCAAAC+TGG | + | chr1.4:7152866-7152885 | None:intergenic | 40.0% | |
| TTGAGTGTCACGTTAGCAAA+AGG | - | chr1.4:7153799-7153818 | MS.gene058448:intron | 40.0% | |
| TTGCGTTAACCCTTCGATAA+TGG | + | chr1.4:7150428-7150447 | None:intergenic | 40.0% | |
| TTGTAGGGATTCTTCATTCG+GGG | + | chr1.4:7153129-7153148 | None:intergenic | 40.0% | |
| ! | AAATTTGGGGCAAGTTGTGT+AGG | - | chr1.4:7152337-7152356 | MS.gene058448:intron | 40.0% |
| ! | ACGGATATATAAGGTTGGCT+TGG | + | chr1.4:7153962-7153981 | None:intergenic | 40.0% |
| ! | ACTTTTGCTTCTCTTTCGAC+TGG | - | chr1.4:7150125-7150144 | MS.gene058448:intron | 40.0% |
| ! | ATTTTGTTGAGGGTGGAGAT+CGG | - | chr1.4:7153888-7153907 | MS.gene058448:intron | 40.0% |
| ! | CCAAAGAGTGTAGTTGATGT+TGG | - | chr1.4:7152277-7152296 | MS.gene058448:intron | 40.0% |
| ! | GCTATGCCATTGATGATAGA+AGG | - | chr1.4:7154298-7154317 | MS.gene058448:CDS | 40.0% |
| ! | TGTTAGTCTCTCTGCTTCAT+AGG | + | chr1.4:7151056-7151075 | None:intergenic | 40.0% |
| ! | TTAGCTCTTTCAGCTTGAAC+AGG | + | chr1.4:7152376-7152395 | None:intergenic | 40.0% |
| ! | TTTTAGTCCCTAAATGGGTG+AGG | + | chr1.4:7151270-7151289 | None:intergenic | 40.0% |
| !! | ACACTCTTTGGCCATTTTGA+TGG | + | chr1.4:7152268-7152287 | None:intergenic | 40.0% |
| !! | ACTATTATTATGGTGCCACC+CGG | + | chr1.4:7153083-7153102 | None:intergenic | 40.0% |
| !! | AGTTTGTTGGTGAGTTAGCA+CGG | - | chr1.4:7153048-7153067 | MS.gene058448:intron | 40.0% |
| !! | ATAAGGTTGGCTTGGTAGTT+GGG | + | chr1.4:7153954-7153973 | None:intergenic | 40.0% |
| !! | TATAAGGTTGGCTTGGTAGT+TGG | + | chr1.4:7153955-7153974 | None:intergenic | 40.0% |
| !! | TGATAATGGCCAACAGTTGA+TGG | - | chr1.4:7154064-7154083 | MS.gene058448:CDS | 40.0% |
| !! | TGCTCAAGGATTAGCTGATA+AGG | - | chr1.4:7152408-7152427 | MS.gene058448:intron | 40.0% |
| AATGCTGAACGTATCACTGC+TGG | + | chr1.4:7153661-7153680 | None:intergenic | 45.0% | |
| ACTTGAAACCATGTCCCTTC+AGG | - | chr1.4:7153232-7153251 | MS.gene058448:intron | 45.0% | |
| AGCTGAAAGAGCTAATGCTC+TGG | - | chr1.4:7152381-7152400 | MS.gene058448:intron | 45.0% | |
| AGGGTCATTGCGTCTATCAA+TGG | - | chr1.4:7149896-7149915 | MS.gene058448:intron | 45.0% | |
| AGGTACCTGGCCAAGAAATT+TGG | - | chr1.4:7152322-7152341 | MS.gene058448:intron | 45.0% | |
| AGTGCAGTATGCAAGTGAGA+CGG | + | chr1.4:7152940-7152959 | None:intergenic | 45.0% | |
| ATATCGGACAGCAGTCAGAT+CGG | - | chr1.4:7151524-7151543 | MS.gene058448:intron | 45.0% | |
| ATCATCGTATTCAAGCTGGG+TGG | - | chr1.4:7151433-7151452 | MS.gene058448:intron | 45.0% | |
| ATCCCTACAACAATGGGAGA+AGG | - | chr1.4:7153139-7153158 | MS.gene058448:intron | 45.0% | |
| CACCATTAGAGAAAGAGTGG+GGG | - | chr1.4:7151671-7151690 | MS.gene058448:intron | 45.0% | |
| CACTTACTTTCCTCTCGTGT+TGG | + | chr1.4:7151587-7151606 | None:intergenic | 45.0% | |
| CGAGAGGAAAGTAAGTGTAG+CGG | - | chr1.4:7151590-7151609 | MS.gene058448:intron | 45.0% | |
| CTAGAACAACCATTCCCTGA+CGG | - | chr1.4:7152840-7152859 | MS.gene058448:intron | 45.0% | |
| CTTACCACTTCGCAAGATTG+AGG | + | chr1.4:7153701-7153720 | None:intergenic | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | + | chr1.4:7151475-7151494 | None:intergenic | 45.0% | |
| CTTCTAACAACGGCATCTAC+AGG | + | chr1.4:7151762-7151781 | None:intergenic | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | - | chr1.4:7151795-7151814 | MS.gene058448:CDS | 45.0% | |
| GATCCTTCTCCCATTGTTGT+AGG | + | chr1.4:7153145-7153164 | None:intergenic | 45.0% | |
| GGCCAAAATGGAGCAACAAA+GGG | + | chr1.4:7153640-7153659 | None:intergenic | 45.0% | |
| GGGCCCATAGTACAAAATGA+CGG | - | chr1.4:7151390-7151409 | MS.gene058448:intron | 45.0% | |
| GGTACCTGGCCAAGAAATTT+GGG | - | chr1.4:7152323-7152342 | MS.gene058448:intron | 45.0% | |
| GGTTCTGCTAATCCAGAGTT+CGG | + | chr1.4:7150406-7150425 | None:intergenic | 45.0% | |
| GTACCTGGCCAAGAAATTTG+GGG | - | chr1.4:7152324-7152343 | MS.gene058448:intron | 45.0% | |
| GTCAGATCGGCAATGTTGTA+TGG | - | chr1.4:7151537-7151556 | MS.gene058448:intron | 45.0% | |
| GTCATTGCGTCTATCAATGG+CGG | - | chr1.4:7149899-7149918 | MS.gene058448:intron | 45.0% | |
| TACCCCCACTCTTTCTCTAA+TGG | + | chr1.4:7151676-7151695 | None:intergenic | 45.0% | |
| TGGCCAAAATGGAGCAACAA+AGG | + | chr1.4:7153641-7153660 | None:intergenic | 45.0% | |
| TGGGGTGATCATATGCATCA+TGG | - | chr1.4:7150026-7150045 | MS.gene058448:intron | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | - | chr1.4:7151442-7151461 | MS.gene058448:intron | 45.0% | |
| TTCACCTCAATCTTGCGAAG+TGG | - | chr1.4:7153694-7153713 | MS.gene058448:intron | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | - | chr1.4:7151456-7151475 | MS.gene058448:intron | 45.0% | |
| TTGATGTTGGGTGTGGCATA+GGG | - | chr1.4:7152290-7152309 | MS.gene058448:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1.4:7151928-7151947 | None:intergenic | 45.0% |
| ! | AAGTAAGTGTAGCGGAGATG+AGG | - | chr1.4:7151598-7151617 | MS.gene058448:intron | 45.0% |
| ! | AGTGTAGTTGATGTTGGGTG+TGG | - | chr1.4:7152283-7152302 | MS.gene058448:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1.4:7151929-7151948 | None:intergenic | 45.0% |
| ! | CTCCCTTTGTTGCTCCATTT+TGG | - | chr1.4:7153635-7153654 | MS.gene058448:intron | 45.0% |
| ! | GAAAGAAGCGATGGTGGTAA+TGG | - | chr1.4:7149926-7149945 | MS.gene058448:intron | 45.0% |
| ! | GTTTGTTGGTGAGTTAGCAC+GGG | - | chr1.4:7153049-7153068 | MS.gene058448:intron | 45.0% |
| ! | TAGAGCGTCAGCAACTTGAA+AGG | + | chr1.4:7152823-7152842 | None:intergenic | 45.0% |
| !!! | TCATTATTTAAAATTATTAT+TGG | - | chr1.4:7152677-7152696 | MS.gene058448:intron | 5.0% |
| ACGGCCAGTTTGATCTAGTG+TGG | - | chr1.4:7152859-7152878 | MS.gene058448:intron | 50.0% | |
| ACTAGATCAAACTGGCCGTC+AGG | + | chr1.4:7152858-7152877 | None:intergenic | 50.0% | |
| ATTGCGTCTATCAATGGCGG+CGG | - | chr1.4:7149902-7149921 | MS.gene058448:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1.4:7151927-7151946 | MS.gene058448:intron | 50.0% | |
| CGAAAGCCTGAAAACGCAGA+GGG | - | chr1.4:7154361-7154380 | MS.gene058448:CDS | 50.0% | |
| CGTATCACTGCTGGCCAAAA+TGG | + | chr1.4:7153652-7153671 | None:intergenic | 50.0% | |
| CTAGATCAAACTGGCCGTCA+GGG | + | chr1.4:7152857-7152876 | None:intergenic | 50.0% | |
| CTAGTGTGGTCAATGGAGAG+CGG | - | chr1.4:7152873-7152892 | MS.gene058448:intron | 50.0% | |
| CTTACTGTCTAGCCGAACTC+TGG | - | chr1.4:7150391-7150410 | MS.gene058448:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1.4:7151924-7151943 | None:intergenic | 50.0% | |
| GACGCTCGATATGTGACCAA+AGG | - | chr1.4:7154173-7154192 | MS.gene058448:CDS | 50.0% | |
| GTCTGACTGCAACGTGATAC+TGG | - | chr1.4:7152629-7152648 | MS.gene058448:intron | 50.0% | |
| GTTGATGTTGGGTGTGGCAT+AGG | - | chr1.4:7152289-7152308 | MS.gene058448:intron | 50.0% | |
| TCACTACGGTTGGACTCAAG+TGG | - | chr1.4:7150291-7150310 | MS.gene058448:intron | 50.0% | |
| TCCAACTTTCACCTCGTCGT+GGG | + | chr1.4:7151331-7151350 | None:intergenic | 50.0% | |
| TCGAAAGCCTGAAAACGCAG+AGG | - | chr1.4:7154360-7154379 | MS.gene058448:CDS | 50.0% | |
| TGAGTCTTCGAGTGTGCCTT+TGG | + | chr1.4:7151196-7151215 | None:intergenic | 50.0% | |
| TGATGTTGGGTGTGGCATAG+GGG | - | chr1.4:7152291-7152310 | MS.gene058448:intron | 50.0% | |
| TGTTGTATGGTACGGAGTGC+TGG | - | chr1.4:7151550-7151569 | MS.gene058448:intron | 50.0% | |
| TTGCCCCAAATTTCTTGGCC+AGG | + | chr1.4:7152330-7152349 | None:intergenic | 50.0% | |
| ! | ATGGTATCTCTGTGGTGCTG+AGG | + | chr1.4:7149837-7149856 | None:intergenic | 50.0% |
| ! | CATTGACCCTCTGCGTTTTC+AGG | + | chr1.4:7154370-7154389 | None:intergenic | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1.4:7151930-7151949 | None:intergenic | 50.0% |
| ! | GTTGTATGGTACGGAGTGCT+GGG | - | chr1.4:7151551-7151570 | MS.gene058448:intron | 50.0% |
| AATGCTCTGGCTGCTGCTCA+AGG | - | chr1.4:7152394-7152413 | MS.gene058448:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1.4:7151916-7151935 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1.4:7151915-7151934 | MS.gene058448:intron | 55.0% | |
| CATGGACATTTCCCACGACG+AGG | - | chr1.4:7151317-7151336 | MS.gene058448:CDS | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1.4:7151922-7151941 | MS.gene058448:intron | 55.0% | |
| CGGAGATGAGGATGTTGTGC+TGG | - | chr1.4:7151610-7151629 | MS.gene058448:intron | 55.0% | |
| CGGTTAAGAGCCAACACGAG+AGG | - | chr1.4:7151574-7151593 | MS.gene058448:intron | 55.0% | |
| CTCCAACTTTCACCTCGTCG+TGG | + | chr1.4:7151332-7151351 | None:intergenic | 55.0% | |
| GATGTTGGGTGTGGCATAGG+GGG | - | chr1.4:7152292-7152311 | MS.gene058448:intron | 55.0% | |
| GTAGTTGGGTGGGGGAGTTT+AGG | + | chr1.4:7153940-7153959 | None:intergenic | 55.0% | |
| GTGGCATAGGGGGAAGTTCA+AGG | - | chr1.4:7152302-7152321 | MS.gene058448:intron | 55.0% | |
| TCAAACTGGCCGTCAGGGAA+TGG | + | chr1.4:7152852-7152871 | None:intergenic | 55.0% | |
| TCAGCAGTTGAGCACCACTC+TGG | + | chr1.4:7153200-7153219 | None:intergenic | 55.0% | |
| TCCCACGACGAGGTGAAAGT+TGG | - | chr1.4:7151327-7151346 | MS.gene058448:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1.4:7151916-7151935 | MS.gene058448:intron | 55.0% | |
| ! | AGGGGGAAGTTCAAGGTACC+TGG | - | chr1.4:7152309-7152328 | MS.gene058448:intron | 55.0% |
| ! | TATGTCGGTGCTTCATCGCG+TGG | - | chr1.4:7152744-7152763 | MS.gene058448:intron | 55.0% |
| !! | AGGTTGGCTTGGTAGTTGGG+TGG | + | chr1.4:7153951-7153970 | None:intergenic | 55.0% |
| !! | CGGAAGTGTCAGTGCTGCAT+AGG | + | chr1.4:7152580-7152599 | None:intergenic | 55.0% |
| !! | GGTTGGCTTGGTAGTTGGGT+GGG | + | chr1.4:7153950-7153969 | None:intergenic | 55.0% |
| !! | GTTGGCTTGGTAGTTGGGTG+GGG | + | chr1.4:7153949-7153968 | None:intergenic | 55.0% |
| !! | TTGGCTTGGTAGTTGGGTGG+GGG | + | chr1.4:7153948-7153967 | None:intergenic | 55.0% |
| GGCGGTGAAAGAAGCGATGG+TGG | - | chr1.4:7149920-7149939 | MS.gene058448:intron | 60.0% | |
| GTTAGCACGGGTAGCAGCAC+CGG | - | chr1.4:7153061-7153080 | MS.gene058448:intron | 60.0% | |
| TGGGTGGGGGAGTTTAGGAG+AGG | + | chr1.4:7153935-7153954 | None:intergenic | 60.0% | |
| TTAGCACGGGTAGCAGCACC+GGG | - | chr1.4:7153062-7153081 | MS.gene058448:intron | 60.0% | |
| !! | GTATGGTACGGAGTGCTGGG+CGG | - | chr1.4:7151554-7151573 | MS.gene058448:intron | 60.0% |
| GGCGGCGGTGAAAGAAGCGA+TGG | - | chr1.4:7149917-7149936 | MS.gene058448:intron | 65.0% | |
| ! | GCACGGGTAGCAGCACCGGG+TGG | - | chr1.4:7153065-7153084 | MS.gene058448:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 7149780 | 7154390 | 7149780 | ID=MS.gene058448 |
| chr1.4 | mRNA | 7149780 | 7154390 | 7149780 | ID=MS.gene058448.t1;Parent=MS.gene058448 |
| chr1.4 | exon | 7154024 | 7154390 | 7154024 | ID=MS.gene058448.t1.exon1;Parent=MS.gene058448.t1 |
| chr1.4 | CDS | 7154024 | 7154390 | 7154024 | ID=cds.MS.gene058448.t1;Parent=MS.gene058448.t1 |
| chr1.4 | exon | 7151741 | 7151910 | 7151741 | ID=MS.gene058448.t1.exon2;Parent=MS.gene058448.t1 |
| chr1.4 | CDS | 7151741 | 7151910 | 7151741 | ID=cds.MS.gene058448.t1;Parent=MS.gene058448.t1 |
| chr1.4 | exon | 7151250 | 7151354 | 7151250 | ID=MS.gene058448.t1.exon3;Parent=MS.gene058448.t1 |
| chr1.4 | CDS | 7151250 | 7151354 | 7151250 | ID=cds.MS.gene058448.t1;Parent=MS.gene058448.t1 |
| chr1.4 | exon | 7150917 | 7151120 | 7150917 | ID=MS.gene058448.t1.exon4;Parent=MS.gene058448.t1 |
| chr1.4 | CDS | 7150917 | 7151120 | 7150917 | ID=cds.MS.gene058448.t1;Parent=MS.gene058448.t1 |
| chr1.4 | exon | 7150455 | 7150557 | 7150455 | ID=MS.gene058448.t1.exon5;Parent=MS.gene058448.t1 |
| chr1.4 | CDS | 7150455 | 7150557 | 7150455 | ID=cds.MS.gene058448.t1;Parent=MS.gene058448.t1 |
| chr1.4 | exon | 7149780 | 7149898 | 7149780 | ID=MS.gene058448.t1.exon6;Parent=MS.gene058448.t1 |
| chr1.4 | CDS | 7149780 | 7149898 | 7149780 | ID=cds.MS.gene058448.t1;Parent=MS.gene058448.t1 |
| Gene Sequence |
| Protein sequence |
