Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46445.t1 | KEH41970.1 | 92 | 301 | 6 | 1 | 1 | 283 | 112 | 412 | 2.30E-163 | 584.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46445.t1 | Q9CAX1 | 64.2 | 288 | 85 | 1 | 1 | 270 | 137 | 424 | 1.6e-112 | 407.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46445.t1 | A0A072VV51 | 92.0 | 301 | 6 | 1 | 1 | 283 | 112 | 412 | 1.6e-163 | 584.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054884 | MS.gene46445 | -0.801899 | 7.24E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene46445 | 0.812517 | 4.07E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 74 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTGCGTTCTTCGCTTTC+TGG | 0.066218 | 1.3:+42948954 | None:intergenic |
| GGTTCCTGGTTCCCGATATT+TGG | 0.265711 | 1.3:+42949094 | None:intergenic |
| TACATTGGTATTCTAATAAC+TGG | 0.269659 | 1.3:-42950202 | MS.gene46445:CDS |
| GGAGCATCGGGTGGGGTTCC+TGG | 0.280362 | 1.3:+42949080 | None:intergenic |
| GCACCTTTCTTATCTATTAT+AGG | 0.282563 | 1.3:-42950281 | MS.gene46445:CDS |
| CATTTACCTTCCCACCTTCC+TGG | 0.294788 | 1.3:+42949878 | None:intergenic |
| ACATGACTGTAGAATATTAT+AGG | 0.311467 | 1.3:-42950304 | MS.gene46445:CDS |
| CAACTCCTCTCTAAGAAATA+TGG | 0.312711 | 1.3:-42948993 | MS.gene46445:CDS |
| TTTGAACATCACATATCTTT+CGG | 0.342805 | 1.3:-42949141 | MS.gene46445:CDS |
| GCTATGCCCCTGTTCATTAC+AGG | 0.375757 | 1.3:-42949753 | MS.gene46445:intron |
| TTGCAGGGGTATCTATTTCC+AGG | 0.376397 | 1.3:-42949896 | MS.gene46445:intron |
| TATACTTGCCTGTAATGAAC+AGG | 0.389013 | 1.3:+42949745 | None:intergenic |
| CATGACTGTAGAATATTATA+GGG | 0.397772 | 1.3:-42950303 | MS.gene46445:CDS |
| AATGGACGCATTGTGTTTGC+AGG | 0.402906 | 1.3:-42950469 | MS.gene46445:CDS |
| TACTTTGCATGTTGTCAAAA+GGG | 0.411641 | 1.3:-42950414 | MS.gene46445:CDS |
| TTACTTTGCATGTTGTCAAA+AGG | 0.415390 | 1.3:-42950415 | MS.gene46445:CDS |
| ACGGTCACCCTTCCAAATAT+CGG | 0.418287 | 1.3:-42949106 | MS.gene46445:CDS |
| CCTTACAGACATGGAAATCA+TGG | 0.428443 | 1.3:-42949822 | MS.gene46445:CDS |
| AACCCCACCCGATGCTCCTC+AGG | 0.434501 | 1.3:-42949075 | MS.gene46445:CDS |
| CATATTTCTTAGAGAGGAGT+TGG | 0.437810 | 1.3:+42948994 | None:intergenic |
| ATAAGTTCATTCCACGTGTC+TGG | 0.438600 | 1.3:+42949023 | None:intergenic |
| TCACATATCTTTCGGAATTG+AGG | 0.454039 | 1.3:-42949133 | MS.gene46445:CDS |
| CTACAATCCTGAGGAGCATC+GGG | 0.479635 | 1.3:+42949068 | None:intergenic |
| ATTCCACGTGTCTGGCACTC+CGG | 0.480121 | 1.3:+42949031 | None:intergenic |
| GATATAAATACGTTGTAATA+CGG | 0.481799 | 1.3:+42949209 | None:intergenic |
| CCATGATTTCCATGTCTGTA+AGG | 0.482202 | 1.3:+42949822 | None:intergenic |
| GTTGTAAAAGAGATGCAATA+TGG | 0.488049 | 1.3:-42949182 | MS.gene46445:CDS |
| AAGAGATGCAATATGGAAGC+TGG | 0.489238 | 1.3:-42949175 | MS.gene46445:CDS |
| AAGAAGACGAAACTCCTCAT+AGG | 0.494604 | 1.3:+42949781 | None:intergenic |
| CCTGGTTCCCGATATTTGGA+AGG | 0.494657 | 1.3:+42949098 | None:intergenic |
| CGGTCACCCTTCCAAATATC+GGG | 0.498571 | 1.3:-42949105 | MS.gene46445:CDS |
| CTCCTCAGGATTGTAGCCAC+TGG | 0.511858 | 1.3:-42949061 | MS.gene46445:CDS |
| TTCCACGTGTCTGGCACTCC+GGG | 0.514233 | 1.3:+42949032 | None:intergenic |
| ATATTTCTTAGAGAGGAGTT+GGG | 0.521772 | 1.3:+42948995 | None:intergenic |
| GCTACAATCCTGAGGAGCAT+CGG | 0.523452 | 1.3:+42949067 | None:intergenic |
| TTCAGTGGGCAGAAACCAAT+GGG | 0.529626 | 1.3:-42950443 | MS.gene46445:CDS |
| TGTAGCCACTGGTGTTTACC+CGG | 0.530101 | 1.3:-42949050 | MS.gene46445:CDS |
| TGCAAAGTAATGACTCCCAT+TGG | 0.533961 | 1.3:+42950428 | None:intergenic |
| GGTATCTATTTCCAGGAAGG+TGG | 0.535569 | 1.3:-42949889 | MS.gene46445:CDS |
| AGGAATGGCACATGGAATGA+AGG | 0.537052 | 1.3:-42949290 | MS.gene46445:CDS |
| ATTCAGTGGGCAGAAACCAA+TGG | 0.546878 | 1.3:-42950444 | MS.gene46445:CDS |
| CCTTCCAAATATCGGGAACC+AGG | 0.563273 | 1.3:-42949098 | MS.gene46445:CDS |
| CTGGTTCCCGATATTTGGAA+GGG | 0.564236 | 1.3:+42949099 | None:intergenic |
| ACTTTGCATGTTGTCAAAAG+GGG | 0.566215 | 1.3:-42950413 | MS.gene46445:CDS |
| ATCCTGAGGAGCATCGGGTG+GGG | 0.569446 | 1.3:+42949073 | None:intergenic |
| GTATCTATTTCCAGGAAGGT+GGG | 0.572325 | 1.3:-42949888 | MS.gene46445:CDS |
| CTTTCGGAATTGAGGAAAGA+CGG | 0.573755 | 1.3:-42949125 | MS.gene46445:CDS |
| TGATGCCATATTTCTTAGAG+AGG | 0.576119 | 1.3:+42948988 | None:intergenic |
| GTCCATTGCGACTCCTCTCT+AGG | 0.578072 | 1.3:+42950485 | None:intergenic |
| TGACCTATAATAGATAAGAA+AGG | 0.579713 | 1.3:+42950278 | None:intergenic |
| TTGGTATTCTAATAACTGGA+AGG | 0.580759 | 1.3:-42950198 | MS.gene46445:CDS |
| CTCCTAGAGAGGAGTCGCAA+TGG | 0.581234 | 1.3:-42950487 | MS.gene46445:CDS |
| TGAGTAATCTAAATCCTATG+AGG | 0.582191 | 1.3:-42949795 | MS.gene46445:CDS |
| ACTCCTCTCTAGGAGGTCAC+TGG | 0.585040 | 1.3:+42950495 | None:intergenic |
| GTGTTTGCAGGTGATTCAGT+GGG | 0.590354 | 1.3:-42950457 | MS.gene46445:CDS |
| TGTGTTTGCAGGTGATTCAG+TGG | 0.591622 | 1.3:-42950458 | MS.gene46445:CDS |
| TTAGGAGATCCTTACAGACA+TGG | 0.594474 | 1.3:-42949831 | MS.gene46445:CDS |
| CAATCCTGAGGAGCATCGGG+TGG | 0.595880 | 1.3:+42949071 | None:intergenic |
| AATCCTGAGGAGCATCGGGT+GGG | 0.600124 | 1.3:+42949072 | None:intergenic |
| GAAATTGCAGGAATGGCACA+TGG | 0.608323 | 1.3:-42949298 | MS.gene46445:intron |
| CTATTTCCAGGAAGGTGGGA+AGG | 0.609686 | 1.3:-42949884 | MS.gene46445:CDS |
| TCAGACTTGATGAGTTACAT+TGG | 0.612151 | 1.3:-42950217 | MS.gene46445:CDS |
| TGGTATTCTAATAACTGGAA+GGG | 0.614654 | 1.3:-42950197 | MS.gene46445:CDS |
| AGGGGTATCTATTTCCAGGA+AGG | 0.619562 | 1.3:-42949892 | MS.gene46445:CDS |
| CTTACAGACATGGAAATCAT+GGG | 0.626328 | 1.3:-42949821 | MS.gene46445:CDS |
| ATGCCAGTGACCTCCTAGAG+AGG | 0.628848 | 1.3:-42950498 | MS.gene46445:CDS |
| ATACTTGCCTGTAATGAACA+GGG | 0.637425 | 1.3:+42949746 | None:intergenic |
| TACCCGGAGTGCCAGACACG+TGG | 0.640012 | 1.3:-42949034 | MS.gene46445:CDS |
| GCACTCCGGGTAAACACCAG+TGG | 0.663248 | 1.3:+42949045 | None:intergenic |
| AATGGCACATGGAATGAAGG+AGG | 0.677257 | 1.3:-42949287 | MS.gene46445:CDS |
| CATTGCGACTCCTCTCTAGG+AGG | 0.680185 | 1.3:+42950488 | None:intergenic |
| TACTTGCCTGTAATGAACAG+GGG | 0.685669 | 1.3:+42949747 | None:intergenic |
| AGGAAACTGTGACAAAGACA+AGG | 0.691950 | 1.3:-42949267 | MS.gene46445:CDS |
| CACCAGTGGCTACAATCCTG+AGG | 0.695000 | 1.3:+42949059 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAATTTATGATTATCA+AGG | + | chr1.3:42949754-42949773 | None:intergenic | 15.0% |
| !! | TCAAAAATATATGAAGTTAA+TGG | - | chr1.3:42949077-42949096 | MS.gene46445:CDS | 15.0% |
| !!! | ATTAAAAGCATTAAAATGAA+CGG | - | chr1.3:42949771-42949790 | MS.gene46445:CDS | 15.0% |
| !! | GATATAAATACGTTGTAATA+CGG | + | chr1.3:42950250-42950269 | None:intergenic | 20.0% |
| !!! | AATGTTCTTGTTTTCAATAA+TGG | - | chr1.3:42949286-42949305 | MS.gene46445:CDS | 20.0% |
| !!! | ATGACATACTTTTAGTTTTA+AGG | + | chr1.3:42950067-42950086 | None:intergenic | 20.0% |
| !!! | TAACTTCATATATTTTTGAG+AGG | + | chr1.3:42949076-42949095 | None:intergenic | 20.0% |
| !!! | TATCCAAATATACTTTTGAA+AGG | + | chr1.3:42950124-42950143 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCTAAGAAATGAA+AGG | + | chr1.3:42949403-42949422 | None:intergenic | 20.0% |
| ! | ACATGACTGTAGAATATTAT+AGG | - | chr1.3:42949152-42949171 | MS.gene46445:CDS | 25.0% |
| ! | AGAAATAACACATCTAAACA+AGG | - | chr1.3:42949528-42949547 | MS.gene46445:intron | 25.0% |
| ! | CATGACTGTAGAATATTATA+GGG | - | chr1.3:42949153-42949172 | MS.gene46445:CDS | 25.0% |
| ! | TACATTGGTATTCTAATAAC+TGG | - | chr1.3:42949254-42949273 | MS.gene46445:CDS | 25.0% |
| ! | TGACCTATAATAGATAAGAA+AGG | + | chr1.3:42949181-42949200 | None:intergenic | 25.0% |
| ! | TTTGAAAGGATGACTAAAAT+GGG | + | chr1.3:42950110-42950129 | None:intergenic | 25.0% |
| ! | TTTGAACATCACATATCTTT+CGG | - | chr1.3:42950315-42950334 | MS.gene46445:intron | 25.0% |
| !! | CATCCTTTCAAAAGTATATT+TGG | - | chr1.3:42950118-42950137 | MS.gene46445:intron | 25.0% |
| !! | TTGTTTTCAATAATGGTCAT+TGG | - | chr1.3:42949293-42949312 | MS.gene46445:intron | 25.0% |
| !!! | TACTTTGAGATCATTTCATT+TGG | - | chr1.3:42949367-42949386 | MS.gene46445:intron | 25.0% |
| !!! | TTTTGAAAGGATGACTAAAA+TGG | + | chr1.3:42950111-42950130 | None:intergenic | 25.0% |
| AAAATTGAGCTAAAGTCATG+TGG | - | chr1.3:42949842-42949861 | MS.gene46445:CDS | 30.0% | |
| ATATTTCTTAGAGAGGAGTT+GGG | + | chr1.3:42950464-42950483 | None:intergenic | 30.0% | |
| GCACCTTTCTTATCTATTAT+AGG | - | chr1.3:42949175-42949194 | MS.gene46445:CDS | 30.0% | |
| GTTGTAAAAGAGATGCAATA+TGG | - | chr1.3:42950274-42950293 | MS.gene46445:CDS | 30.0% | |
| GTTTAAACTTCCTCAAATTC+TGG | + | chr1.3:42949820-42949839 | None:intergenic | 30.0% | |
| TACTTTGCATGTTGTCAAAA+GGG | - | chr1.3:42949042-42949061 | MS.gene46445:CDS | 30.0% | |
| TGAGTAATCTAAATCCTATG+AGG | - | chr1.3:42949661-42949680 | MS.gene46445:intron | 30.0% | |
| TGGTATTCTAATAACTGGAA+GGG | - | chr1.3:42949259-42949278 | MS.gene46445:CDS | 30.0% | |
| TTACTTTGCATGTTGTCAAA+AGG | - | chr1.3:42949041-42949060 | MS.gene46445:CDS | 30.0% | |
| TTGGTATTCTAATAACTGGA+AGG | - | chr1.3:42949258-42949277 | MS.gene46445:CDS | 30.0% | |
| ! | GAGCTTCTAAACAAATTTTG+AGG | + | chr1.3:42949441-42949460 | None:intergenic | 30.0% |
| ! | TTTCTAAGAAATGAAAGGCA+AGG | + | chr1.3:42949398-42949417 | None:intergenic | 30.0% |
| ! | TTTTCAATAATGGTCATTGG+TGG | - | chr1.3:42949296-42949315 | MS.gene46445:intron | 30.0% |
| ACTTTGCATGTTGTCAAAAG+GGG | - | chr1.3:42949043-42949062 | MS.gene46445:CDS | 35.0% | |
| ATACTTGCCTGTAATGAACA+GGG | + | chr1.3:42949713-42949732 | None:intergenic | 35.0% | |
| ATTAAAATGAACGGCATGAG+GGG | - | chr1.3:42949780-42949799 | MS.gene46445:CDS | 35.0% | |
| CATATTTCTTAGAGAGGAGT+TGG | + | chr1.3:42950465-42950484 | None:intergenic | 35.0% | |
| CATTAAAATGAACGGCATGA+GGG | - | chr1.3:42949779-42949798 | MS.gene46445:CDS | 35.0% | |
| CTTACAGACATGGAAATCAT+GGG | - | chr1.3:42949635-42949654 | MS.gene46445:intron | 35.0% | |
| GCTACTTAGTGATGAAATTG+AGG | - | chr1.3:42949123-42949142 | MS.gene46445:CDS | 35.0% | |
| TATACTTGCCTGTAATGAAC+AGG | + | chr1.3:42949714-42949733 | None:intergenic | 35.0% | |
| TCACATATCTTTCGGAATTG+AGG | - | chr1.3:42950323-42950342 | MS.gene46445:intron | 35.0% | |
| TCAGACTTGATGAGTTACAT+TGG | - | chr1.3:42949239-42949258 | MS.gene46445:CDS | 35.0% | |
| TGATGCCATATTTCTTAGAG+AGG | + | chr1.3:42950471-42950490 | None:intergenic | 35.0% | |
| ! | AACAAGGTCTATCATTTTGC+AGG | - | chr1.3:42949544-42949563 | MS.gene46445:intron | 35.0% |
| ! | ACAAGGTCTATCATTTTGCA+GGG | - | chr1.3:42949545-42949564 | MS.gene46445:intron | 35.0% |
| ! | ATGTCACTAGATGAGTTTTG+TGG | + | chr1.3:42949208-42949227 | None:intergenic | 35.0% |
| ! | CAACTCCTCTCTAAGAAATA+TGG | - | chr1.3:42950463-42950482 | MS.gene46445:CDS | 35.0% |
| ! | TGACAGTGAAAGAAGCTTTT+AGG | - | chr1.3:42949607-42949626 | MS.gene46445:intron | 35.0% |
| AAGAAGACGAAACTCCTCAT+AGG | + | chr1.3:42949678-42949697 | None:intergenic | 40.0% | |
| AAGAGATGCAATATGGAAGC+TGG | - | chr1.3:42950281-42950300 | MS.gene46445:CDS | 40.0% | |
| AAGTCCCATAAGCAAACACA+AGG | - | chr1.3:42949100-42949119 | MS.gene46445:CDS | 40.0% | |
| AGGAAACTGTGACAAAGACA+AGG | - | chr1.3:42950189-42950208 | MS.gene46445:CDS | 40.0% | |
| AGTCCCATAAGCAAACACAA+GGG | - | chr1.3:42949101-42949120 | MS.gene46445:CDS | 40.0% | |
| AGTCTGTACAGTGAAATTGC+AGG | - | chr1.3:42950146-42950165 | MS.gene46445:CDS | 40.0% | |
| ATAAGTTCATTCCACGTGTC+TGG | + | chr1.3:42950436-42950455 | None:intergenic | 40.0% | |
| CCATGATTTCCATGTCTGTA+AGG | + | chr1.3:42949637-42949656 | None:intergenic | 40.0% | |
| CCTTACAGACATGGAAATCA+TGG | - | chr1.3:42949634-42949653 | MS.gene46445:intron | 40.0% | |
| CTTTCGGAATTGAGGAAAGA+CGG | - | chr1.3:42950331-42950350 | MS.gene46445:intron | 40.0% | |
| GCATTAAAATGAACGGCATG+AGG | - | chr1.3:42949778-42949797 | MS.gene46445:CDS | 40.0% | |
| GTACAGTGAAATTGCAGGAA+TGG | - | chr1.3:42950151-42950170 | MS.gene46445:CDS | 40.0% | |
| GTATCTATTTCCAGGAAGGT+GGG | - | chr1.3:42949568-42949587 | MS.gene46445:intron | 40.0% | |
| TACTTGCCTGTAATGAACAG+GGG | + | chr1.3:42949712-42949731 | None:intergenic | 40.0% | |
| TAGCCCTTGTGTTTGCTTAT+GGG | + | chr1.3:42949107-42949126 | None:intergenic | 40.0% | |
| TGCAAAGTAATGACTCCCAT+TGG | + | chr1.3:42949031-42949050 | None:intergenic | 40.0% | |
| TGTGACTGTTTGAGAGCTTA+TGG | + | chr1.3:42950002-42950021 | None:intergenic | 40.0% | |
| TTAAAATGAACGGCATGAGG+GGG | - | chr1.3:42949781-42949800 | MS.gene46445:CDS | 40.0% | |
| TTAGGAGATCCTTACAGACA+TGG | - | chr1.3:42949625-42949644 | MS.gene46445:intron | 40.0% | |
| ! | AGTTTTGCAGGATCGTTTTC+TGG | + | chr1.3:42950217-42950236 | None:intergenic | 40.0% |
| ! | CAAGGTCTATCATTTTGCAG+GGG | - | chr1.3:42949546-42949565 | MS.gene46445:intron | 40.0% |
| !! | TCACTAGATGAGTTTTGTGG+TGG | + | chr1.3:42949205-42949224 | None:intergenic | 40.0% |
| AATGGACGCATTGTGTTTGC+AGG | - | chr1.3:42948987-42949006 | MS.gene46445:CDS | 45.0% | |
| AATGGCACATGGAATGAAGG+AGG | - | chr1.3:42950169-42950188 | MS.gene46445:CDS | 45.0% | |
| ACGGTCACCCTTCCAAATAT+CGG | - | chr1.3:42950350-42950369 | MS.gene46445:intron | 45.0% | |
| AGGAATGGCACATGGAATGA+AGG | - | chr1.3:42950166-42950185 | MS.gene46445:CDS | 45.0% | |
| ATTCAGTGGGCAGAAACCAA+TGG | - | chr1.3:42949012-42949031 | MS.gene46445:CDS | 45.0% | |
| CTGGTTCCCGATATTTGGAA+GGG | + | chr1.3:42950360-42950379 | None:intergenic | 45.0% | |
| GAAATTGCAGGAATGGCACA+TGG | - | chr1.3:42950158-42950177 | MS.gene46445:CDS | 45.0% | |
| GGGATGCAATCCAGAATTTG+AGG | - | chr1.3:42949807-42949826 | MS.gene46445:CDS | 45.0% | |
| GGTATCTATTTCCAGGAAGG+TGG | - | chr1.3:42949567-42949586 | MS.gene46445:intron | 45.0% | |
| GTAGCCCTTGTGTTTGCTTA+TGG | + | chr1.3:42949108-42949127 | None:intergenic | 45.0% | |
| GTGTTTGCAGGTGATTCAGT+GGG | - | chr1.3:42948999-42949018 | MS.gene46445:CDS | 45.0% | |
| TGTGTTTGCAGGTGATTCAG+TGG | - | chr1.3:42948998-42949017 | MS.gene46445:CDS | 45.0% | |
| TTCAGTGGGCAGAAACCAAT+GGG | - | chr1.3:42949013-42949032 | MS.gene46445:CDS | 45.0% | |
| !! | AGGGGTATCTATTTCCAGGA+AGG | - | chr1.3:42949564-42949583 | MS.gene46445:intron | 45.0% |
| !! | TTGCAGGGGTATCTATTTCC+AGG | - | chr1.3:42949560-42949579 | MS.gene46445:intron | 45.0% |
| CATTTACCTTCCCACCTTCC+TGG | + | chr1.3:42949581-42949600 | None:intergenic | 50.0% | |
| CCTGGTTCCCGATATTTGGA+AGG | + | chr1.3:42950361-42950380 | None:intergenic | 50.0% | |
| CCTTCCAAATATCGGGAACC+AGG | - | chr1.3:42950358-42950377 | MS.gene46445:intron | 50.0% | |
| CGGTCACCCTTCCAAATATC+GGG | - | chr1.3:42950351-42950370 | MS.gene46445:intron | 50.0% | |
| CTATTTCCAGGAAGGTGGGA+AGG | - | chr1.3:42949572-42949591 | MS.gene46445:intron | 50.0% | |
| GCTATGCCCCTGTTCATTAC+AGG | - | chr1.3:42949703-42949722 | MS.gene46445:intron | 50.0% | |
| GGTTCCTGGTTCCCGATATT+TGG | + | chr1.3:42950365-42950384 | None:intergenic | 50.0% | |
| TGTAGCCACTGGTGTTTACC+CGG | - | chr1.3:42950406-42950425 | MS.gene46445:CDS | 50.0% | |
| ! | GCTACAATCCTGAGGAGCAT+CGG | + | chr1.3:42950392-42950411 | None:intergenic | 50.0% |
| !! | CTACAATCCTGAGGAGCATC+GGG | + | chr1.3:42950391-42950410 | None:intergenic | 50.0% |
| !! | GGATCAGCTTCGAGTTTTGC+AGG | + | chr1.3:42950229-42950248 | None:intergenic | 50.0% |
| AAATGAACGGCATGAGGGGG+TGG | - | chr1.3:42949784-42949803 | MS.gene46445:CDS | 55.0% | |
| AATGAACGGCATGAGGGGGT+GGG | - | chr1.3:42949785-42949804 | MS.gene46445:CDS | 55.0% | |
| ATGCCAGTGACCTCCTAGAG+AGG | - | chr1.3:42948958-42948977 | MS.gene46445:CDS | 55.0% | |
| ATTCCACGTGTCTGGCACTC+CGG | + | chr1.3:42950428-42950447 | None:intergenic | 55.0% | |
| CACCAGTGGCTACAATCCTG+AGG | + | chr1.3:42950400-42950419 | None:intergenic | 55.0% | |
| CAGCTGCGTTCTTCGCTTTC+TGG | + | chr1.3:42950505-42950524 | None:intergenic | 55.0% | |
| CATTGCGACTCCTCTCTAGG+AGG | + | chr1.3:42948971-42948990 | None:intergenic | 55.0% | |
| CTCCTAGAGAGGAGTCGCAA+TGG | - | chr1.3:42948969-42948988 | MS.gene46445:CDS | 55.0% | |
| CTCCTCAGGATTGTAGCCAC+TGG | - | chr1.3:42950395-42950414 | MS.gene46445:CDS | 55.0% | |
| GTCCATTGCGACTCCTCTCT+AGG | + | chr1.3:42948974-42948993 | None:intergenic | 55.0% | |
| ! | ACTCCTCTCTAGGAGGTCAC+TGG | + | chr1.3:42948964-42948983 | None:intergenic | 55.0% |
| !! | AATCCTGAGGAGCATCGGGT+GGG | + | chr1.3:42950387-42950406 | None:intergenic | 55.0% |
| ATGAACGGCATGAGGGGGTG+GGG | - | chr1.3:42949786-42949805 | MS.gene46445:CDS | 60.0% | |
| GCACTCCGGGTAAACACCAG+TGG | + | chr1.3:42950414-42950433 | None:intergenic | 60.0% | |
| TTCCACGTGTCTGGCACTCC+GGG | + | chr1.3:42950427-42950446 | None:intergenic | 60.0% | |
| !! | ATCCTGAGGAGCATCGGGTG+GGG | + | chr1.3:42950386-42950405 | None:intergenic | 60.0% |
| !! | CAATCCTGAGGAGCATCGGG+TGG | + | chr1.3:42950388-42950407 | None:intergenic | 60.0% |
| AACCCCACCCGATGCTCCTC+AGG | - | chr1.3:42950381-42950400 | MS.gene46445:intron | 65.0% | |
| TGAACGGCATGAGGGGGTGG+GGG | - | chr1.3:42949787-42949806 | MS.gene46445:CDS | 65.0% | |
| ! | TACCCGGAGTGCCAGACACG+TGG | - | chr1.3:42950422-42950441 | MS.gene46445:CDS | 65.0% |
| !! | GGAGCATCGGGTGGGGTTCC+TGG | + | chr1.3:42950379-42950398 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 42948953 | 42950525 | 42948953 | ID=MS.gene46445 |
| chr1.3 | mRNA | 42948953 | 42950525 | 42948953 | ID=MS.gene46445.t1;Parent=MS.gene46445 |
| chr1.3 | exon | 42950387 | 42950525 | 42950387 | ID=MS.gene46445.t1.exon1;Parent=MS.gene46445.t1 |
| chr1.3 | CDS | 42950387 | 42950525 | 42950387 | ID=cds.MS.gene46445.t1;Parent=MS.gene46445.t1 |
| chr1.3 | exon | 42950137 | 42950333 | 42950137 | ID=MS.gene46445.t1.exon2;Parent=MS.gene46445.t1 |
| chr1.3 | CDS | 42950137 | 42950333 | 42950137 | ID=cds.MS.gene46445.t1;Parent=MS.gene46445.t1 |
| chr1.3 | exon | 42949754 | 42949912 | 42949754 | ID=MS.gene46445.t1.exon3;Parent=MS.gene46445.t1 |
| chr1.3 | CDS | 42949754 | 42949912 | 42949754 | ID=cds.MS.gene46445.t1;Parent=MS.gene46445.t1 |
| chr1.3 | exon | 42948953 | 42949310 | 42948953 | ID=MS.gene46445.t1.exon4;Parent=MS.gene46445.t1 |
| chr1.3 | CDS | 42948953 | 42949310 | 42948953 | ID=cds.MS.gene46445.t1;Parent=MS.gene46445.t1 |
| Gene Sequence |
| Protein sequence |
