AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46653

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46653.t1 MTR_3g030770 94.737 228 12 0 1 228 1 228 1.87e-163 450
MS.gene46653.t1 MTR_1g108510 93.421 228 15 0 1 228 1 228 7.64e-162 446
MS.gene46653.t1 MTR_2g093190 84.211 228 36 0 1 228 1 228 2.22e-144 402
MS.gene46653.t1 MTR_1g108580 81.579 228 42 0 1 228 1 228 1.39e-139 390
MS.gene46653.t1 MTR_1g105920 75.113 221 45 2 1 213 1 219 2.33e-116 332
MS.gene46653.t1 MTR_8g043650 73.611 216 49 1 1 208 1 216 5.90e-112 320
MS.gene46653.t1 MTR_1g105910 67.660 235 58 3 1 227 1 225 8.40e-110 315
MS.gene46653.t1 MTR_2g030740 70.588 221 55 2 1 213 1 219 1.42e-109 315
MS.gene46653.t1 MTR_1g012570 70.136 221 56 2 1 213 1 219 2.86e-109 314
MS.gene46653.t1 MTR_3g052920 69.683 221 57 2 1 213 1 219 1.39e-107 309
MS.gene46653.t1 MTR_1g075600 63.830 235 67 3 1 227 1 225 2.55e-100 291
MS.gene46653.t1 MTR_0121s0080 63.404 235 68 3 1 227 1 225 1.96e-98 286
MS.gene46653.t1 MTR_1g077360 61.702 235 72 3 1 227 1 225 1.91e-97 284
MS.gene46653.t1 MTR_3g052870 67.606 213 56 3 1 213 1 200 1.42e-95 278
MS.gene46653.t1 MTR_1g105905 64.679 218 59 3 18 227 1 208 3.13e-95 278
MS.gene46653.t1 MTR_5g053390 61.277 235 73 3 1 227 1 225 2.51e-94 276
MS.gene46653.t1 MTR_5g045560 60.426 235 75 3 1 227 1 225 2.94e-93 273
MS.gene46653.t1 MTR_5g055100 60.000 235 76 3 1 227 1 225 1.70e-91 269
MS.gene46653.t1 MTR_2g085280 59.149 235 78 3 1 227 1 225 1.78e-90 266
MS.gene46653.t1 MTR_1g106070 71.429 182 44 1 1 174 1 182 1.98e-90 264
MS.gene46653.t1 MTR_2g085250 59.912 227 81 2 1 219 1 225 3.39e-90 265
MS.gene46653.t1 MTR_7g062350 59.729 221 70 4 16 227 27 237 1.42e-79 239
MS.gene46653.t1 MTR_0121s0100 86.364 132 18 0 1 132 1 132 1.44e-78 232
MS.gene46653.t1 MTR_3g030780 69.697 132 40 0 1 132 1 132 1.89e-62 191
MS.gene46653.t1 MTR_3g080940 52.571 175 81 1 9 183 9 181 2.07e-59 186
MS.gene46653.t1 MTR_1g075570 56.180 178 56 2 18 187 1 164 2.73e-53 169
MS.gene46653.t1 MTR_3g067910 61.165 103 40 0 21 123 2 104 2.48e-39 132
MS.gene46653.t1 MTR_8g086290 41.212 165 87 2 5 166 8 165 5.52e-38 130
MS.gene46653.t1 MTR_2g105290 38.182 165 92 2 5 166 8 165 5.14e-35 123
MS.gene46653.t1 MTR_7g028448 40.000 170 90 3 5 174 8 165 1.28e-29 108
MS.gene46653.t1 MTR_4g036915 40.000 170 90 3 5 174 8 165 1.28e-29 108
MS.gene46653.t1 MTR_1g108500 54.867 113 28 2 8 118 94 185 1.37e-29 112
MS.gene46653.t1 MTR_4g127140 36.571 175 91 4 5 166 8 175 2.96e-26 100
MS.gene46653.t1 MTR_3g067875 80.357 56 11 0 18 73 1 56 1.19e-25 95.5
MS.gene46653.t1 MTR_1g063160 44.643 112 57 3 9 118 2 110 1.68e-23 93.2
MS.gene46653.t1 MTR_3g067915 47.872 94 49 0 33 126 3 96 3.71e-23 90.1
MS.gene46653.t1 MTR_4g131030 39.683 126 60 4 9 118 2 127 4.99e-23 93.2
MS.gene46653.t1 MTR_8g079502 56.522 69 30 0 9 77 2 70 4.82e-22 89.7
MS.gene46653.t1 MTR_1g047550 56.522 69 30 0 9 77 2 70 6.30e-22 89.4
MS.gene46653.t1 MTR_1g054265 51.948 77 37 0 9 85 2 78 7.19e-22 89.0
MS.gene46653.t1 MTR_4g094638 44.000 100 55 1 9 107 2 101 3.36e-21 87.4
MS.gene46653.t1 MTR_4g094632 41.584 101 57 1 9 109 2 100 6.24e-21 85.9
MS.gene46653.t1 MTR_3g067870 65.574 61 21 0 16 76 83 143 1.90e-20 84.7
MS.gene46653.t1 MTR_8g051580 55.072 69 31 0 9 77 2 70 2.06e-20 85.1
MS.gene46653.t1 MTR_8g046350 40.650 123 64 4 9 129 2 117 3.35e-20 84.3
MS.gene46653.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 9.87e-20 84.3
MS.gene46653.t1 MTR_4g093970 32.544 169 82 3 10 160 29 183 2.51e-19 83.6
MS.gene46653.t1 MTR_3g452380 38.760 129 76 3 3 129 11 138 1.12e-18 82.0
MS.gene46653.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 1.22e-18 81.6
MS.gene46653.t1 MTR_4g102530 52.239 67 32 0 10 76 3 69 1.37e-18 80.9
MS.gene46653.t1 MTR_3g102570 44.118 102 54 3 9 109 2 101 3.37e-18 82.0
MS.gene46653.t1 MTR_8g033270 48.148 81 38 2 7 85 2 80 4.25e-18 80.5
MS.gene46653.t1 MTR_8g022970 33.537 164 84 4 8 159 17 167 6.51e-18 78.6
MS.gene46653.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 9.37e-18 78.6
MS.gene46653.t1 MTR_1g053070 46.914 81 43 0 9 89 2 82 1.08e-17 79.3
MS.gene46653.t1 MTR_5g032150 33.333 156 73 7 9 157 2 133 1.14e-17 79.0
MS.gene46653.t1 MTR_2g017865 36.134 119 74 2 9 126 17 134 1.21e-17 79.7
MS.gene46653.t1 MTR_5g032520 40.187 107 52 4 9 108 2 103 1.76e-17 78.6
MS.gene46653.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 2.71e-17 77.8
MS.gene46653.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 3.00e-17 77.8
MS.gene46653.t1 MTR_4g109830 47.887 71 34 2 7 76 2 70 3.01e-17 77.8
MS.gene46653.t1 MTR_0003s0590 50.000 68 34 0 9 76 2 69 3.05e-17 78.6
MS.gene46653.t1 MTR_7g075870 49.254 67 34 0 10 76 3 69 3.79e-17 77.4
MS.gene46653.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 4.38e-17 77.8
MS.gene46653.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 4.55e-17 78.2
MS.gene46653.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 1.23e-16 76.3
MS.gene46653.t1 MTR_6g464720 47.826 69 35 1 9 76 2 70 1.25e-16 76.6
MS.gene46653.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 1.27e-16 76.3
MS.gene46653.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 2.29e-16 71.2
MS.gene46653.t1 MTR_6g015975 47.826 69 35 1 9 76 2 70 2.37e-16 75.9
MS.gene46653.t1 MTR_7g016600 49.296 71 33 2 7 76 2 70 2.61e-16 75.9
MS.gene46653.t1 MTR_7g075870 48.529 68 34 1 10 76 3 70 6.77e-16 73.9
MS.gene46653.t1 MTR_1g029670 48.485 66 33 1 9 74 2 66 1.60e-15 72.4
MS.gene46653.t1 MTR_5g046870 46.377 69 36 1 9 76 2 70 1.74e-15 70.5
MS.gene46653.t1 MTR_8g066260 44.928 69 37 1 9 76 2 70 2.09e-15 73.2
MS.gene46653.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 2.18e-15 72.0
MS.gene46653.t1 MTR_5g046790 50.877 57 28 0 9 65 2 58 2.68e-15 72.4
MS.gene46653.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 6.32e-15 72.0
MS.gene46653.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 8.24e-15 71.6
MS.gene46653.t1 MTR_7g016630 42.029 69 39 1 9 76 2 70 8.33e-15 71.6
MS.gene46653.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 8.76e-15 71.2
MS.gene46653.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 9.26e-15 71.2
MS.gene46653.t1 MTR_4g084740 47.222 72 37 1 9 79 2 73 1.18e-14 72.0
MS.gene46653.t1 MTR_8g097090 53.571 56 26 0 9 64 2 57 1.24e-14 70.9
MS.gene46653.t1 MTR_1g041615 37.383 107 58 2 20 125 17 115 1.75e-14 68.2
MS.gene46653.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.88e-14 66.2
MS.gene46653.t1 MTR_3g113030 45.714 70 36 1 9 76 2 71 2.04e-14 70.1
MS.gene46653.t1 MTR_7g075850 54.386 57 26 0 9 65 2 58 2.90e-14 70.1
MS.gene46653.t1 MTR_1g038300 45.714 70 36 1 9 76 2 71 4.40e-14 69.3
MS.gene46653.t1 MTR_4g036050 29.146 199 116 8 9 198 2 184 1.36e-13 67.4
MS.gene46653.t1 MTR_4g036050 30.667 150 87 6 9 157 2 135 2.77e-13 66.2
MS.gene46653.t1 MTR_4g036050 30.667 150 87 6 9 157 2 135 3.18e-13 66.2
MS.gene46653.t1 MTR_4g036050 30.667 150 87 6 9 157 2 135 4.10e-13 65.9
MS.gene46653.t1 MTR_4g093030 29.299 157 76 4 9 135 2 153 1.45e-12 63.9
MS.gene46653.t1 MTR_4g108720 31.008 129 84 4 9 134 2 128 1.74e-12 66.2
MS.gene46653.t1 MTR_3g109930 31.429 140 80 3 27 159 20 150 4.02e-12 62.8
MS.gene46653.t1 MTR_4g051538 30.303 165 98 4 1 163 1 150 1.10e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46653.t1 AT5G60440 54.396 182 76 4 5 179 3 184 1.63e-56 182
MS.gene46653.t1 AT1G01530 43.333 180 96 3 4 179 2 179 1.95e-40 139
MS.gene46653.t1 AT2G24840 47.826 161 73 4 9 163 63 218 4.27e-40 139
MS.gene46653.t1 AT4G36590 45.614 171 83 4 5 167 3 171 1.76e-38 134
MS.gene46653.t1 AT1G65360 42.222 180 97 4 5 179 3 180 4.73e-37 129
MS.gene46653.t1 AT2G34440 36.000 150 94 2 9 158 2 149 1.50e-26 101
MS.gene46653.t1 AT1G72350 33.155 187 85 5 9 188 43 196 1.13e-23 95.1
MS.gene46653.t1 AT3G66656 38.760 129 75 1 9 133 2 130 2.04e-23 93.2
MS.gene46653.t1 AT3G04100 32.911 158 90 4 2 149 7 158 2.33e-23 93.6
MS.gene46653.t1 AT4G09960 39.231 130 69 5 9 131 2 128 1.91e-20 86.3
MS.gene46653.t1 AT4G09960 38.235 136 74 5 9 137 2 134 2.54e-20 86.3
MS.gene46653.t1 AT4G09960 38.235 136 74 5 9 137 3 135 2.59e-20 86.3
MS.gene46653.t1 AT4G09960 38.235 136 74 5 9 137 12 144 3.02e-20 86.3
MS.gene46653.t1 AT4G09960 38.235 136 74 5 9 137 28 160 3.90e-20 86.3
MS.gene46653.t1 AT2G45660 51.471 68 33 0 10 77 3 70 7.39e-20 83.2
MS.gene46653.t1 AT4G09960 39.669 121 67 4 9 126 97 214 9.67e-20 86.3
MS.gene46653.t1 AT2G45660 51.471 68 33 0 10 77 3 70 3.57e-19 82.8
MS.gene46653.t1 AT2G45650 51.471 68 33 0 9 76 2 69 6.06e-19 83.2
MS.gene46653.t1 AT1G28460 30.994 171 109 5 5 169 4 171 7.78e-19 81.3
MS.gene46653.t1 AT4G24540 34.459 148 80 4 9 156 2 132 1.32e-18 81.3
MS.gene46653.t1 AT3G57230 45.588 68 37 0 9 76 2 69 3.03e-18 78.6
MS.gene46653.t1 AT2G22540 50.000 68 34 0 9 76 2 69 3.20e-18 80.9
MS.gene46653.t1 AT2G22540 50.000 68 34 0 9 76 2 69 3.20e-18 80.9
MS.gene46653.t1 AT5G51870 53.731 67 31 0 10 76 3 69 3.97e-18 79.0
MS.gene46653.t1 AT4G18960 40.385 104 50 2 5 108 16 107 4.43e-18 80.5
MS.gene46653.t1 AT5G10140 52.174 69 32 1 9 76 2 70 5.12e-18 78.6
MS.gene46653.t1 AT2G42830 49.333 75 36 1 2 76 12 84 5.32e-18 80.5
MS.gene46653.t1 AT2G42830 49.333 75 36 1 2 76 12 84 5.65e-18 80.1
MS.gene46653.t1 AT5G51870 53.731 67 31 0 10 76 3 69 5.87e-18 79.3
MS.gene46653.t1 AT4G22950 50.746 67 33 0 10 76 3 69 6.35e-18 78.6
MS.gene46653.t1 AT5G51870 51.389 72 35 0 5 76 21 92 7.62e-18 79.0
MS.gene46653.t1 AT3G58780 37.405 131 68 4 2 126 12 134 8.34e-18 79.7
MS.gene46653.t1 AT5G51870 53.731 67 31 0 10 76 3 69 8.56e-18 79.3
MS.gene46653.t1 AT5G10140 52.174 69 32 1 9 76 2 70 8.66e-18 78.6
MS.gene46653.t1 AT4G37940 47.059 68 36 0 9 76 2 69 9.05e-18 79.3
MS.gene46653.t1 AT4G37940 47.059 68 36 0 9 76 2 69 9.12e-18 79.0
MS.gene46653.t1 AT3G58780 37.405 131 68 4 2 126 18 140 9.14e-18 79.7
MS.gene46653.t1 AT5G10140 52.174 69 32 1 9 76 2 70 9.81e-18 78.2
MS.gene46653.t1 AT4G37940 47.059 68 36 0 9 76 2 69 1.01e-17 78.2
MS.gene46653.t1 AT5G51870 53.731 67 31 0 10 76 13 79 1.05e-17 79.3
MS.gene46653.t1 AT5G10140 52.174 69 32 1 9 76 2 70 1.23e-17 78.2
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.31e-17 75.9
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.33e-17 77.4
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.33e-17 77.4
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.33e-17 77.4
MS.gene46653.t1 AT3G58780 37.405 131 68 4 2 126 12 134 1.49e-17 79.7
MS.gene46653.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.49e-17 79.7
MS.gene46653.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.70e-17 79.3
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.39e-17 76.6
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.39e-17 76.6
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.39e-17 76.6
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.39e-17 76.6
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.39e-17 76.6
MS.gene46653.t1 AT3G57230 45.588 68 37 0 9 76 2 69 2.46e-17 78.6
MS.gene46653.t1 AT3G57230 45.588 68 37 0 9 76 2 69 2.46e-17 78.6
MS.gene46653.t1 AT4G22950 50.746 67 33 0 10 76 3 69 2.47e-17 78.2
MS.gene46653.t1 AT4G22950 50.746 67 33 0 10 76 3 69 2.47e-17 78.2
MS.gene46653.t1 AT3G57390 48.529 68 35 0 9 76 2 69 3.67e-17 77.8
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.51e-17 77.0
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.51e-17 77.0
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.51e-17 77.0
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.53e-17 76.6
MS.gene46653.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.53e-17 76.6
MS.gene46653.t1 AT1G29962 26.901 171 119 2 5 169 4 174 5.86e-17 76.3
MS.gene46653.t1 AT5G51860 50.746 67 33 0 10 76 3 69 8.51e-17 76.3
MS.gene46653.t1 AT3G57390 48.529 68 35 0 9 76 2 69 8.93e-17 77.0
MS.gene46653.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.27e-16 75.9
MS.gene46653.t1 AT2G22540 57.143 56 24 0 9 64 2 57 2.45e-16 75.5
MS.gene46653.t1 AT3G30260 44.928 69 37 1 9 76 2 70 2.84e-16 75.9
MS.gene46653.t1 AT3G61120 47.059 68 36 0 9 76 2 69 3.55e-16 75.5
MS.gene46653.t1 AT2G14210 44.928 69 37 1 9 76 2 70 3.60e-16 75.1
MS.gene46653.t1 AT5G65050 47.826 69 35 1 9 76 2 70 4.38e-16 73.6
MS.gene46653.t1 AT2G14210 44.928 69 37 1 9 76 2 70 4.71e-16 74.7
MS.gene46653.t1 AT1G26310 47.887 71 34 2 7 76 2 70 5.29e-16 75.1
MS.gene46653.t1 AT3G58780 37.302 126 68 4 2 126 12 127 5.88e-16 74.7
MS.gene46653.t1 AT5G15800 47.826 69 35 1 9 76 2 70 6.13e-16 74.7
MS.gene46653.t1 AT4G11880 57.143 56 24 0 10 65 3 58 7.05e-16 73.2
MS.gene46653.t1 AT4G11880 57.143 56 24 0 10 65 3 58 7.05e-16 73.2
MS.gene46653.t1 AT5G60910 46.377 69 36 1 9 76 2 70 9.23e-16 74.3
MS.gene46653.t1 AT1G69120 47.887 71 34 2 7 76 2 70 9.45e-16 73.9
MS.gene46653.t1 AT5G65060 47.826 69 35 1 9 76 2 70 9.88e-16 73.2
MS.gene46653.t1 AT3G58780 53.846 65 28 1 2 66 12 74 1.00e-15 74.7
MS.gene46653.t1 AT5G20240 46.575 73 37 1 9 79 2 74 1.13e-15 73.2
MS.gene46653.t1 AT5G20240 46.575 73 37 1 9 79 2 74 1.14e-15 72.0
MS.gene46653.t1 AT5G15800 47.826 69 35 1 9 76 2 70 1.21e-15 74.3
MS.gene46653.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.24e-15 72.8
MS.gene46653.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.24e-15 72.8
MS.gene46653.t1 AT4G11880 57.143 56 24 0 10 65 3 58 1.27e-15 73.6
MS.gene46653.t1 AT4G11880 57.143 56 24 0 10 65 3 58 1.27e-15 73.6
MS.gene46653.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.29e-15 72.4
MS.gene46653.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.47e-15 73.9
MS.gene46653.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.47e-15 73.9
MS.gene46653.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.47e-15 73.9
MS.gene46653.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.47e-15 73.9
MS.gene46653.t1 AT1G77980 50.000 72 35 1 9 79 2 73 1.47e-15 74.7
MS.gene46653.t1 AT5G65060 47.826 69 35 1 9 76 2 70 1.50e-15 72.4
MS.gene46653.t1 AT5G65060 47.826 69 35 1 9 76 2 70 1.67e-15 72.4
MS.gene46653.t1 AT1G22130 38.710 93 56 1 9 100 2 94 1.81e-15 74.7
MS.gene46653.t1 AT2G03710 48.571 70 34 2 9 76 2 71 2.04e-15 72.0
MS.gene46653.t1 AT3G54340 45.205 73 38 1 9 79 2 74 2.29e-15 72.8
MS.gene46653.t1 AT1G69120 47.887 71 34 2 7 76 2 70 2.41e-15 73.2
MS.gene46653.t1 AT3G02310 46.377 69 36 1 9 76 2 70 3.22e-15 72.0
MS.gene46653.t1 AT5G23260 49.333 75 36 1 5 77 14 88 5.25e-15 72.4
MS.gene46653.t1 AT5G23260 49.333 75 36 1 5 77 14 88 5.31e-15 72.4
MS.gene46653.t1 AT1G24260 53.571 56 26 0 9 64 2 57 7.89e-15 71.6
MS.gene46653.t1 AT1G24260 53.571 56 26 0 9 64 2 57 8.19e-15 71.6
MS.gene46653.t1 AT1G24260 53.571 56 26 0 9 64 2 57 8.41e-15 71.6
MS.gene46653.t1 AT5G23260 50.704 71 33 1 9 77 2 72 1.03e-14 71.6
MS.gene46653.t1 AT5G23260 50.704 71 33 1 9 77 2 72 1.05e-14 71.2
MS.gene46653.t1 AT2G03710 48.571 70 34 2 9 76 2 71 1.11e-14 71.6
MS.gene46653.t1 AT2G03710 48.571 70 34 2 9 76 2 71 1.21e-14 71.2
MS.gene46653.t1 AT5G65070 40.580 69 40 1 9 76 2 70 1.38e-14 68.9
MS.gene46653.t1 AT3G02310 53.571 56 26 0 9 64 2 57 1.70e-14 70.9
MS.gene46653.t1 AT1G71692 45.714 70 37 1 9 77 2 71 2.03e-14 70.1
MS.gene46653.t1 AT2G22630 42.647 68 39 0 9 76 2 69 2.06e-14 70.1
MS.gene46653.t1 AT2G22630 42.647 68 39 0 9 76 2 69 2.06e-14 70.1
MS.gene46653.t1 AT5G65070 40.580 69 40 1 9 76 2 70 2.84e-14 69.3
MS.gene46653.t1 AT5G65070 40.580 69 40 1 9 76 2 70 7.30e-14 68.9
MS.gene46653.t1 AT1G17310 50.633 79 37 1 8 86 47 123 7.68e-14 68.6
MS.gene46653.t1 AT5G65070 40.580 69 40 1 9 76 2 70 8.11e-14 68.2
MS.gene46653.t1 AT1G28450 28.834 163 107 5 5 161 4 163 8.66e-14 67.8
MS.gene46653.t1 AT1G17310 50.633 79 37 1 8 86 58 134 1.09e-13 68.2
MS.gene46653.t1 AT5G65070 47.368 57 30 0 9 65 2 58 1.38e-13 68.2
MS.gene46653.t1 AT1G47760 40.299 67 40 0 9 75 2 68 1.85e-13 66.6
MS.gene46653.t1 AT1G18750 41.333 75 42 1 9 81 2 76 3.25e-13 68.2
MS.gene46653.t1 AT1G18750 41.333 75 42 1 9 81 2 76 3.60e-13 68.2
MS.gene46653.t1 AT1G18750 41.333 75 42 1 9 81 2 76 4.04e-13 68.2
MS.gene46653.t1 AT5G65080 40.580 69 40 1 9 76 9 77 1.35e-12 64.7
MS.gene46653.t1 AT5G65080 48.148 54 28 0 9 62 9 62 2.31e-12 64.3
MS.gene46653.t1 AT4G37435 48.214 56 29 0 9 64 2 57 4.15e-12 63.2
MS.gene46653.t1 AT1G77080 49.275 69 34 1 9 76 2 70 1.68e-11 61.2
MS.gene46653.t1 AT2G26320 37.662 77 46 1 5 79 14 90 1.71e-11 59.7
MS.gene46653.t1 AT5G49420 36.170 94 53 2 5 91 3 96 2.01e-11 62.8
MS.gene46653.t1 AT1G77080 49.275 69 34 1 9 76 2 70 2.20e-11 60.8
MS.gene46653.t1 AT1G69540 41.892 74 42 1 9 81 2 75 3.45e-11 62.4
MS.gene46653.t1 AT1G77080 49.275 69 34 1 9 76 2 70 4.04e-11 60.5
MS.gene46653.t1 AT1G69540 40.789 76 44 1 9 83 2 77 4.34e-11 62.0

Find 43 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCAGATTGTTGAGTATT+TGG 0.166839 3.3:+23446406 None:intergenic
TGGTGGGCTTGTCCGGTTAA+TGG 0.250384 3.3:-23446568 MS.gene46653:CDS
TTGCAGCCTCATTTGCTTGA+TGG 0.267791 3.3:-23446346 MS.gene46653:CDS
TCAACTTGAATTATTCAAAA+AGG 0.268977 3.3:-23446533 MS.gene46653:CDS
TCCGGTTAATGGAATGAATA+AGG 0.314669 3.3:-23446557 MS.gene46653:CDS
TCACCATGGCTTCAATAATA+TGG 0.324358 3.3:-23446311 MS.gene46653:CDS
GCTTTGAGAAAGTCACTTGC+AGG 0.373101 3.3:+23446902 None:intergenic
CTCATCGCCAATCTTCTTCT+CGG 0.375394 3.3:+23446627 None:intergenic
TCCTTATTCATTCCATTAAC+CGG 0.377037 3.3:+23446556 None:intergenic
CCTCCGTTTCCTTGAGCAAA+TGG 0.380041 3.3:+23446599 None:intergenic
GTCTATGACCGTATGAAGAT+TGG 0.395944 3.3:+23446771 None:intergenic
GACTCAAATCAACAACATAA+TGG 0.407196 3.3:-23446653 MS.gene46653:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 3.3:-23446853 MS.gene46653:CDS
GCCTTTCTTTCCACTCGACA+TGG 0.467815 3.3:+23446972 None:intergenic
TCTATGACCGTATGAAGATT+GGG 0.472924 3.3:+23446772 None:intergenic
GTTGAGTATTTGGCTGATGA+TGG 0.473248 3.3:+23446416 None:intergenic
ATGGATGCCGAGAAGAAGAT+TGG 0.480508 3.3:-23446634 MS.gene46653:CDS
TGAGGCTGCAATTGCAACAT+AGG 0.486801 3.3:+23446358 None:intergenic
GAACCATTTGCTCAAGGAAA+CGG 0.490715 3.3:-23446602 MS.gene46653:CDS
AGCAGCATCTGCACCACAAA+GGG 0.492573 3.3:+23446840 None:intergenic
ACACCATATTATTGAAGCCA+TGG 0.549763 3.3:+23446308 None:intergenic
ATTGATCCATCAAGCAAATG+AGG 0.560013 3.3:+23446340 None:intergenic
TGGTCACCCCAATCTTCATA+CGG 0.566894 3.3:-23446779 MS.gene46653:CDS
GCCATGTCGAGTGGAAAGAA+AGG 0.571063 3.3:-23446973 MS.gene46653:CDS
CTCGTTGTATTCTCACCTAG+TGG 0.580084 3.3:-23446817 MS.gene46653:CDS
TCGAGTGGAAAGAAAGGCCG+AGG 0.584906 3.3:-23446967 MS.gene46653:CDS
CGGCACCATGCAACTCATTG+AGG 0.589770 3.3:-23446716 MS.gene46653:CDS
ATGAAGATTGGGGTGACCAA+AGG 0.594093 3.3:+23446783 None:intergenic
AGCATTGAGTTCACGAACGT+TGG 0.603238 3.3:+23446681 None:intergenic
TGTATTCTCACCTAGTGGAA+AGG 0.611194 3.3:-23446812 MS.gene46653:CDS
GTGGTACAAGAGAAAGATAG+TGG 0.616578 3.3:+23446749 None:intergenic
TGAGCTGAACCATTTGCTCA+AGG 0.619764 3.3:-23446608 MS.gene46653:CDS
AAGGAAAATACCTTTCCACT+AGG 0.624124 3.3:+23446802 None:intergenic
ACTTTCTCAAAGCGTCGTAG+CGG 0.625617 3.3:-23446892 MS.gene46653:CDS
GAGCAGCATCTGCACCACAA+AGG 0.629318 3.3:+23446839 None:intergenic
GTTCACGAACGTTGGCATTG+CGG 0.638735 3.3:+23446689 None:intergenic
ATATTATTGAAGCCATGGTG+AGG 0.642989 3.3:+23446313 None:intergenic
GTGAGCCTCAATGAGTTGCA+TGG 0.660003 3.3:+23446711 None:intergenic
CCATTTGCTCAAGGAAACGG+AGG 0.672367 3.3:-23446599 MS.gene46653:CDS
TGTGTGTCAGCCATGTCGAG+TGG 0.672629 3.3:-23446982 None:intergenic
CTATGACCGTATGAAGATTG+GGG 0.706113 3.3:+23446773 None:intergenic
CTTGTACCACCACAAAACAA+CGG 0.721002 3.3:-23446736 MS.gene46653:CDS
GGATCAATGATGCCTCACCA+TGG 0.734402 3.3:-23446325 MS.gene46653:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACTTGAATTATTCAAAA+AGG - chr3.3:23446743-23446762 MS.gene46653:CDS 20.0%
! ATTTCAGATTGTTGAGTATT+TGG + chr3.3:23446873-23446892 None:intergenic 25.0%
! TGAATTATTCAAAAAGGCTT+TGG - chr3.3:23446749-23446768 MS.gene46653:CDS 25.0%
!!! GGATTTTGAAAAAAATGTGA+TGG + chr3.3:23446900-23446919 None:intergenic 25.0%
GACTCAAATCAACAACATAA+TGG - chr3.3:23446623-23446642 MS.gene46653:CDS 30.0%
TCCTTATTCATTCCATTAAC+CGG + chr3.3:23446723-23446742 None:intergenic 30.0%
! AAGCATTGCCAACAAAAAAT+GGG + chr3.3:23446821-23446840 None:intergenic 30.0%
! ATTATTCAAAAAGGCTTTGG+AGG - chr3.3:23446752-23446771 MS.gene46653:CDS 30.0%
!! TCTTTTTCATCTCGATCTTT+TGG + chr3.3:23446338-23446357 None:intergenic 30.0%
AAGGAAAATACCTTTCCACT+AGG + chr3.3:23446477-23446496 None:intergenic 35.0%
ACACCATATTATTGAAGCCA+TGG + chr3.3:23446971-23446990 None:intergenic 35.0%
ATATTATTGAAGCCATGGTG+AGG + chr3.3:23446966-23446985 None:intergenic 35.0%
ATTGATCCATCAAGCAAATG+AGG + chr3.3:23446939-23446958 None:intergenic 35.0%
TCACCATGGCTTCAATAATA+TGG - chr3.3:23446965-23446984 MS.gene46653:CDS 35.0%
TCCGGTTAATGGAATGAATA+AGG - chr3.3:23446719-23446738 MS.gene46653:CDS 35.0%
TCTATGACCGTATGAAGATT+GGG + chr3.3:23446507-23446526 None:intergenic 35.0%
!! GAAGCATTGCCAACAAAAAA+TGG + chr3.3:23446822-23446841 None:intergenic 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG - chr3.3:23446477-23446496 MS.gene46653:CDS 35.0%
CTATGACCGTATGAAGATTG+GGG + chr3.3:23446506-23446525 None:intergenic 40.0%
CTTGTACCACCACAAAACAA+CGG - chr3.3:23446540-23446559 MS.gene46653:CDS 40.0%
GAACCATTTGCTCAAGGAAA+CGG - chr3.3:23446674-23446693 MS.gene46653:CDS 40.0%
GTCTATGACCGTATGAAGAT+TGG + chr3.3:23446508-23446527 None:intergenic 40.0%
GTGGTACAAGAGAAAGATAG+TGG + chr3.3:23446530-23446549 None:intergenic 40.0%
GTTGAGTATTTGGCTGATGA+TGG + chr3.3:23446863-23446882 None:intergenic 40.0%
TGTATTCTCACCTAGTGGAA+AGG - chr3.3:23446464-23446483 MS.gene46653:CDS 40.0%
! AGGAAACGGAGGCTAATTTT+TGG - chr3.3:23446688-23446707 MS.gene46653:CDS 40.0%
!! AAACGGAGGCTAATTTTTGG+TGG - chr3.3:23446691-23446710 MS.gene46653:CDS 40.0%
!!! AACGGAGGCTAATTTTTGGT+GGG - chr3.3:23446692-23446711 MS.gene46653:CDS 40.0%
!!! CGAACTCTCCCATTTTTTGT+TGG - chr3.3:23446810-23446829 MS.gene46653:CDS 40.0%
!!! TAATTTTTGGTGGGCTTGTC+CGG - chr3.3:23446701-23446720 MS.gene46653:CDS 40.0%
ATGAAGATTGGGGTGACCAA+AGG + chr3.3:23446496-23446515 None:intergenic 45.0%
ATGGATGCCGAGAAGAAGAT+TGG - chr3.3:23446642-23446661 MS.gene46653:CDS 45.0%
CTCATCGCCAATCTTCTTCT+CGG + chr3.3:23446652-23446671 None:intergenic 45.0%
CTCGTTGTATTCTCACCTAG+TGG - chr3.3:23446459-23446478 MS.gene46653:CDS 45.0%
TGAGCTGAACCATTTGCTCA+AGG - chr3.3:23446668-23446687 MS.gene46653:CDS 45.0%
TGAGGCTGCAATTGCAACAT+AGG + chr3.3:23446921-23446940 None:intergenic 45.0%
TGGTCACCCCAATCTTCATA+CGG - chr3.3:23446497-23446516 MS.gene46653:CDS 45.0%
TTGCAGCCTCATTTGCTTGA+TGG - chr3.3:23446930-23446949 MS.gene46653:CDS 45.0%
! AGCATTGAGTTCACGAACGT+TGG + chr3.3:23446598-23446617 None:intergenic 45.0%
!! ACTTTCTCAAAGCGTCGTAG+CGG - chr3.3:23446384-23446403 MS.gene46653:CDS 45.0%
!! GCTTTGAGAAAGTCACTTGC+AGG + chr3.3:23446377-23446396 None:intergenic 45.0%
AGCAGCATCTGCACCACAAA+GGG + chr3.3:23446439-23446458 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG - chr3.3:23446423-23446442 MS.gene46653:CDS 50.0%
CCATTTGCTCAAGGAAACGG+AGG - chr3.3:23446677-23446696 MS.gene46653:CDS 50.0%
CCTCCGTTTCCTTGAGCAAA+TGG + chr3.3:23446680-23446699 None:intergenic 50.0%
GGATCAATGATGCCTCACCA+TGG - chr3.3:23446951-23446970 MS.gene46653:CDS 50.0%
GTGAGCCTCAATGAGTTGCA+TGG + chr3.3:23446568-23446587 None:intergenic 50.0%
GTTCACGAACGTTGGCATTG+CGG + chr3.3:23446590-23446609 None:intergenic 50.0%
! TCTCGATCTTTTGGCGACCT+CGG + chr3.3:23446329-23446348 None:intergenic 50.0%
!!! ATGGTGCCGTTGTTTTGTGG+TGG + chr3.3:23446549-23446568 None:intergenic 50.0%
!!! TGCATGGTGCCGTTGTTTTG+TGG + chr3.3:23446552-23446571 None:intergenic 50.0%
CGGCACCATGCAACTCATTG+AGG - chr3.3:23446560-23446579 MS.gene46653:CDS 55.0%
GAGCAGCATCTGCACCACAA+AGG + chr3.3:23446440-23446459 None:intergenic 55.0%
TCGAGTGGAAAGAAAGGCCG+AGG - chr3.3:23446309-23446328 MS.gene46653:CDS 55.0%
!! TGGTGGGCTTGTCCGGTTAA+TGG - chr3.3:23446708-23446727 MS.gene46653:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 23446306 23446992 23446306 ID=MS.gene46653
chr3.3 mRNA 23446306 23446992 23446306 ID=MS.gene46653.t1;Parent=MS.gene46653
chr3.3 exon 23446306 23446992 23446306 ID=MS.gene46653.t1.exon1;Parent=MS.gene46653.t1
chr3.3 CDS 23446306 23446992 23446306 ID=cds.MS.gene46653.t1;Parent=MS.gene46653.t1
Gene Sequence

>MS.gene46653

ATGTCGAGTGGAAAGAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTCATACGGTCATAGACCACTATCTTTCTCTTGTACCACCACAAAACAACGGCACCATGCAACTCATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACATAATGGATGCCGAGAAGAAGATTGGCGATGAGCTGAACCATTTGCTCAAGGAAACGGAGGCTAATTTTTGGTGGGCTTGTCCGGTTAATGGAATGAATAAGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGTGCTTAAGAAACTTCTAATTCAACATGCTACAACTCGAACTCTCCCATTTTTTGTTGGCAATGCTTCTTTCTCGAACATTTATCTCCATCATCAGCCAAATACTCAACAATCTGAAATGTTGCCATCACATTTTTTTCAAAATCCTATGTTGCAATTGCAGCCTCATTTGCTTGATGGATCAATGATGCCTCACCATGGCTTCAATAATATGGTGTAA
Protein sequence

>MS.gene46653.t1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLHTVIDHYLSLVPPQNNGTMQLIEAHRNANVRELNAQMTQINNIMDAEKKIGDELNHLLKETEANFWWACPVNGMNKDQLELFKKALEVLKKLLIQHATTRTLPFFVGNASFSNIYLHHQPNTQQSEMLPSHFFQNPMLQLQPHLLDGSMMPHHGFNNMV