AlfalfaGEDB | MS.gene46656

M. sativa cultivar XinJiangDaYe / MS.gene46656

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46656.t1	AES69501.2	94.5	200	11	0	1	200	1	200	2.60E-101	378.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46656.t1	Q9FKK2	53.8	182	77	3	5	179	3	184	8.1e-43	175.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46656.t1	G7IWT8	94.5	200	11	0	1	200	1	200	1.9e-101	378.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene46656.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene46656	MS.gene22094	PPI
MS.gene46656	MS.gene068836	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46656.t1	MTR_3g030770	94.737	228	12	0	1	228	1	228	1.87e-163	450
MS.gene46656.t1	MTR_1g108510	93.421	228	15	0	1	228	1	228	7.64e-162	446
MS.gene46656.t1	MTR_2g093190	84.211	228	36	0	1	228	1	228	2.22e-144	402
MS.gene46656.t1	MTR_1g108580	81.579	228	42	0	1	228	1	228	1.39e-139	390
MS.gene46656.t1	MTR_1g105920	75.113	221	45	2	1	213	1	219	2.33e-116	332
MS.gene46656.t1	MTR_8g043650	73.611	216	49	1	1	208	1	216	5.90e-112	320
MS.gene46656.t1	MTR_1g105910	67.660	235	58	3	1	227	1	225	8.40e-110	315
MS.gene46656.t1	MTR_2g030740	70.588	221	55	2	1	213	1	219	1.42e-109	315
MS.gene46656.t1	MTR_1g012570	70.136	221	56	2	1	213	1	219	2.86e-109	314
MS.gene46656.t1	MTR_3g052920	69.683	221	57	2	1	213	1	219	1.39e-107	309

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46656.t1	AT5G60440	54.396	182	76	4	5	179	3	184	1.63e-56	182
MS.gene46656.t1	AT1G01530	43.333	180	96	3	4	179	2	179	1.95e-40	139
MS.gene46656.t1	AT2G24840	47.826	161	73	4	9	163	63	218	4.27e-40	139
MS.gene46656.t1	AT4G36590	45.614	171	83	4	5	167	3	171	1.76e-38	134
MS.gene46656.t1	AT1G65360	42.222	180	97	4	5	179	3	180	4.73e-37	129
MS.gene46656.t1	AT2G34440	36.000	150	94	2	9	158	2	149	1.50e-26	101
MS.gene46656.t1	AT1G72350	33.155	187	85	5	9	188	43	196	1.13e-23	95.1
MS.gene46656.t1	AT3G66656	38.760	129	75	1	9	133	2	130	2.04e-23	93.2
MS.gene46656.t1	AT3G04100	32.911	158	90	4	2	149	7	158	2.33e-23	93.6
MS.gene46656.t1	AT4G09960	39.231	130	69	5	9	131	2	128	1.91e-20	86.3

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Find 40 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAAATACCTTTCCACT+AGG	0.624124	3.3:+23420483	None:intergenic
ACACCATATTATTGAAGCCA+TGG	0.549763	3.3:+23419989	None:intergenic
ACTTTCTCAAAGCGTCGTAG+CGG	0.625617	3.3:-23420573	MS.gene46656:CDS
AGCAGCATCTGCACCACAAA+GGG	0.492573	3.3:+23420521	None:intergenic
AGCATTGAGTTCACGAACGT+TGG	0.603238	3.3:+23420362	None:intergenic
AGTGAGCTTTGCACCCTTTG+TGG	0.424656	3.3:-23420534	MS.gene46656:CDS
ATATTATTGAAGCCATGGTG+AGG	0.642989	3.3:+23419994	None:intergenic
ATGAAGATTGGGGTGACCAA+AGG	0.594093	3.3:+23420464	None:intergenic
ATGGATGCCGAGAAGAAGAT+TGG	0.480508	3.3:-23420315	MS.gene46656:CDS
ATTGATCCATCAAGCAAATG+AGG	0.560013	3.3:+23420021	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACTCAAATCAACAACATAA+TGG	-	chr3.3:23420304-23420323	MS.gene46656:CDS	30.0%
TCCTTATTCATTCCATTAAC+CGG	+	chr3.3:23420404-23420423	None:intergenic	30.0%
AAGGAAAATACCTTTCCACT+AGG	+	chr3.3:23420158-23420177	None:intergenic	35.0%
ACACCATATTATTGAAGCCA+TGG	+	chr3.3:23420652-23420671	None:intergenic	35.0%
ATATTATTGAAGCCATGGTG+AGG	+	chr3.3:23420647-23420666	None:intergenic	35.0%
ATTGATCCATCAAGCAAATG+AGG	+	chr3.3:23420620-23420639	None:intergenic	35.0%
TCACCATGGCTTCAATAATA+TGG	-	chr3.3:23420646-23420665	MS.gene46656:CDS	35.0%
TCCGGTTAATGGAATGAATA+AGG	-	chr3.3:23420400-23420419	MS.gene46656:CDS	35.0%
TCTATGACCGTATGAAGATT+GGG	+	chr3.3:23420188-23420207	None:intergenic	35.0%
CTATGACCGTATGAAGATTG+GGG	+	chr3.3:23420187-23420206	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	23419987	23420673	23419987	ID=MS.gene46656
chr3.3	mRNA	23419987	23420673	23419987	ID=MS.gene46656.t1;Parent=MS.gene46656
chr3.3	exon	23419987	23420673	23419987	ID=MS.gene46656.t1.exon1;Parent=MS.gene46656.t1
chr3.3	CDS	23419987	23420673	23419987	ID=cds.MS.gene46656.t1;Parent=MS.gene46656.t1

Gene Sequence

>MS.gene46656

ATGTCGAGTGGAAAAAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTCATACGGTCATAGACCACTATCTTTCTCTTGTACCACCACAAAACAACGGCACCATGCAACTCATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACATAATGGATGCCGAGAAGAAGATTGGCGATGAGCTGAACCATTTGCTCAAGGAAACGGAGGCTAATTTTTGGTGGGCTTGTCCGGTTAATGGAATGAATAAGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGTGCTTAAGAAACTTCTAATTCAACATGCTACAACTCGAACTCTCCCATTTTTTGTTGGCAATGCTTCTTTCTCGAACATTTATCTCCATCATCAGCCAAATACTCAACAATCTGAAATGTTGCCATCACATTTTTTTCAAAATCCTATGTTGCAATTGCAGCCTCATTTGCTTGATGGATCAATGATGCCTCACCATGGCTTCAATAATATGGTGTAA

Protein sequence

>MS.gene46656.t1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLHTVIDHYLSLVPPQNNGTMQLIEAHRNANVRELNAQMTQINNIMDAEKKIGDELNHLLKETEANFWWACPVNGMNKDQLELFKKALEVLKKLLIQHATTRTLPFFVGNASFSNIYLHHQPNTQQSEMLPSHFFQNPMLQLQPHLLDGSMMPHHGFNNMV