Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46785.t1 | XP_013459167.1 | 96.4 | 365 | 13 | 0 | 1 | 365 | 1 | 365 | 5.30E-197 | 696.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46785.t1 | A0A072V4V0 | 96.4 | 365 | 13 | 0 | 1 | 365 | 1 | 365 | 3.8e-197 | 696.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene46785 | 0.80655 | 7.79E-50 | -1.69E-46 |
| MS.gene050297 | MS.gene46785 | 0.804099 | 2.54E-49 | -1.69E-46 |
| MS.gene058196 | MS.gene46785 | 0.803584 | 3.25E-49 | -1.69E-46 |
| MS.gene058197 | MS.gene46785 | 0.817957 | 2.52E-52 | -1.69E-46 |
| MS.gene058198 | MS.gene46785 | 0.818483 | 1.91E-52 | -1.69E-46 |
| MS.gene059300 | MS.gene46785 | 0.807816 | 4.20E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46785.t1 | MTR_3g028600 | 96.438 | 365 | 13 | 0 | 1 | 365 | 1 | 365 | 0.0 | 712 |
| MS.gene46785.t1 | MTR_7g092270 | 33.210 | 271 | 139 | 8 | 1 | 246 | 1 | 254 | 1.06e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46785.t1 | AT3G52110 | 43.011 | 372 | 160 | 12 | 1 | 361 | 1 | 331 | 1.41e-71 | 226 |
| MS.gene46785.t1 | AT3G52110 | 40.000 | 400 | 160 | 12 | 1 | 361 | 1 | 359 | 1.03e-67 | 218 |
| MS.gene46785.t1 | AT3G52110 | 41.964 | 336 | 126 | 9 | 1 | 297 | 1 | 306 | 5.02e-62 | 202 |
| MS.gene46785.t1 | AT3G52110 | 43.793 | 290 | 123 | 8 | 1 | 280 | 1 | 260 | 3.50e-57 | 187 |
Find 75 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAACCAAAATCCGAATT+TGG | 0.214237 | 3.3:+21031007 | MS.gene46785:CDS |
| TTGGAGGGGATGTGTGTTAA+AGG | 0.219732 | 3.3:+21031392 | MS.gene46785:CDS |
| CAAAAGCCTTGGACATGTTT+TGG | 0.224647 | 3.3:+21032748 | MS.gene46785:CDS |
| GAGTAACCAAATTCGGATTT+TGG | 0.233277 | 3.3:-21031013 | None:intergenic |
| GATACAAGTACCTTCTAATT+TGG | 0.250372 | 3.3:-21030805 | None:intergenic |
| TGACTTGATCAAAGCCTTCT+TGG | 0.260330 | 3.3:-21031048 | None:intergenic |
| TGAATCTGAATTTATCATCT+TGG | 0.317982 | 3.3:-21030974 | None:intergenic |
| CAGATCACCAAGTCCTTTCA+AGG | 0.337664 | 3.3:+21030348 | MS.gene46785:CDS |
| GAATCTGAATTTATCATCTT+GGG | 0.347711 | 3.3:-21030973 | None:intergenic |
| AATTGAGGAGTAACCAAATT+CGG | 0.348210 | 3.3:-21031020 | None:intergenic |
| TCTTCTTCTTTACCCTCTAC+AGG | 0.352895 | 3.3:-21031263 | None:intergenic |
| TTCTCCAAGTCAAGAGTTAT+AGG | 0.377448 | 3.3:-21032064 | None:intergenic |
| AAGGAAACCACTGCTTGAAA+TGG | 0.384635 | 3.3:+21031355 | MS.gene46785:CDS |
| AGCTTCATCATCATTGTTGT+TGG | 0.398451 | 3.3:-21029843 | None:intergenic |
| AGGTTCCAGATCCCGGCTAA+TGG | 0.435543 | 3.3:+21032186 | MS.gene46785:CDS |
| ACATACCATTAGCCGGGATC+TGG | 0.436592 | 3.3:-21032191 | None:intergenic |
| TCTGTGATTTGATTCAGAAT+AGG | 0.438456 | 3.3:-21031173 | None:intergenic |
| CAAAGAGTTGATTTCAATGA+AGG | 0.444479 | 3.3:-21031125 | None:intergenic |
| AGAGACTGGCGTTAAGAGCT+AGG | 0.446612 | 3.3:+21031213 | MS.gene46785:CDS |
| TGGATAGAAGAGAGAAAGAA+AGG | 0.449130 | 3.3:+21031336 | MS.gene46785:CDS |
| GCCTTCTTGGACTTCAATTG+AGG | 0.456182 | 3.3:-21031035 | None:intergenic |
| TTGAAAACCTTGAAAGGACT+TGG | 0.458556 | 3.3:-21030355 | None:intergenic |
| GGACAAGAAGTCAACAAACT+TGG | 0.464269 | 3.3:-21029807 | None:intergenic |
| TGGAGGGGATGTGTGTTAAA+GGG | 0.467012 | 3.3:+21031393 | MS.gene46785:CDS |
| AGAAAATTTGAACCCTGTAG+AGG | 0.473053 | 3.3:+21031250 | MS.gene46785:CDS |
| CATGCCTATAACTCTTGACT+TGG | 0.473248 | 3.3:+21032060 | MS.gene46785:CDS |
| AACTCTGCCAAAGCGTTCAC+TGG | 0.473825 | 3.3:-21031314 | None:intergenic |
| TGTTGTTGGTGTTATGATTG+AGG | 0.476015 | 3.3:-21029829 | None:intergenic |
| AATGGGTAAGGCTGAAAGGT+TGG | 0.476335 | 3.3:+21031373 | MS.gene46785:CDS |
| GTTGTTGGTGTTATGATTGA+GGG | 0.482834 | 3.3:-21029828 | None:intergenic |
| CCTCAAAAGGTTCCAGATCC+CGG | 0.489613 | 3.3:+21032179 | MS.gene46785:CDS |
| AGGAAACCACTGCTTGAAAT+GGG | 0.490444 | 3.3:+21031356 | MS.gene46785:CDS |
| CAAGTGGTGACCAAATTAGA+AGG | 0.496358 | 3.3:+21030795 | MS.gene46785:CDS |
| CTGCAATGAATTAAAGAGAC+TGG | 0.497634 | 3.3:+21031199 | MS.gene46785:CDS |
| AGTGAACGCTTTGGCAGAGT+TGG | 0.497821 | 3.3:+21031316 | MS.gene46785:CDS |
| CTTCTAATTTGGTCACCACT+TGG | 0.502583 | 3.3:-21030794 | None:intergenic |
| GCCTTACCCATTTCAAGCAG+TGG | 0.503957 | 3.3:-21031362 | None:intergenic |
| GAGACTGGCGTTAAGAGCTA+GGG | 0.505735 | 3.3:+21031214 | MS.gene46785:CDS |
| CTTCTTCTTTACCCTCTACA+GGG | 0.509031 | 3.3:-21031262 | None:intergenic |
| TGGAACCCGCGAAAATCGAT+TGG | 0.518768 | 3.3:+21029729 | MS.gene46785:CDS |
| GACCTCGCCAGTGAACGCTT+TGG | 0.520359 | 3.3:+21031307 | MS.gene46785:CDS |
| TCCTCAATTGAAGTCCAAGA+AGG | 0.523966 | 3.3:+21031034 | MS.gene46785:CDS |
| TTGGGGAGAAGATGATGAAA+GGG | 0.527318 | 3.3:-21030955 | None:intergenic |
| TGGAAGAGAAACAAAAGCCT+TGG | 0.531913 | 3.3:+21032737 | MS.gene46785:CDS |
| ACCACTGCTTGAAATGGGTA+AGG | 0.533049 | 3.3:+21031361 | MS.gene46785:CDS |
| GGGTAAGGCTGAAAGGTTGG+AGG | 0.534211 | 3.3:+21031376 | MS.gene46785:CDS |
| CAAGAATTGAAAACCTTGAA+AGG | 0.537468 | 3.3:-21030361 | None:intergenic |
| AATAACCCTAACCCCTCAAA+AGG | 0.543271 | 3.3:+21032166 | MS.gene46785:CDS |
| ACAACAATGATGATGAAGCT+TGG | 0.550311 | 3.3:+21029846 | MS.gene46785:CDS |
| GAGATGGGAAAATCAAGAGA+AGG | 0.552016 | 3.3:+21030925 | MS.gene46785:intron |
| GGTTGGGACATACCATTAGC+CGG | 0.552393 | 3.3:-21032198 | None:intergenic |
| CTTGGGGAGAAGATGATGAA+AGG | 0.552832 | 3.3:-21030956 | None:intergenic |
| AATCTGAATTTATCATCTTG+GGG | 0.559370 | 3.3:-21030972 | None:intergenic |
| GGAGAATGTAAGACAAAAGA+GGG | 0.568087 | 3.3:+21032081 | MS.gene46785:CDS |
| GAAAATTTGAACCCTGTAGA+GGG | 0.569739 | 3.3:+21031251 | MS.gene46785:CDS |
| TGGAGAATGTAAGACAAAAG+AGG | 0.571613 | 3.3:+21032080 | MS.gene46785:CDS |
| CAGCTTGATAATGTTGTGCA+AGG | 0.574727 | 3.3:-21032780 | None:intergenic |
| GACAAGAAGTCAACAAACTT+GGG | 0.580519 | 3.3:-21029806 | None:intergenic |
| GTTGGGACATACCATTAGCC+GGG | 0.583044 | 3.3:-21032197 | None:intergenic |
| TGTAGAGGGTAAAGAAGAAG+AGG | 0.585762 | 3.3:+21031265 | MS.gene46785:CDS |
| TGCCAAAGCGTTCACTGGCG+AGG | 0.593030 | 3.3:-21031309 | None:intergenic |
| TTGAAATGGGTAAGGCTGAA+AGG | 0.599337 | 3.3:+21031369 | MS.gene46785:CDS |
| CAACAAACTTGGGTGCGTTG+AGG | 0.603580 | 3.3:-21029796 | None:intergenic |
| GGTAAGGCTGAAAGGTTGGA+GGG | 0.606044 | 3.3:+21031377 | MS.gene46785:CDS |
| GCAAAACAAGGAAGTTGCAA+AGG | 0.614584 | 3.3:+21032674 | MS.gene46785:CDS |
| AGATGGGAAAATCAAGAGAA+GGG | 0.615803 | 3.3:+21030926 | MS.gene46785:CDS |
| TGACACATTGCAAAACAGTA+CGG | 0.621210 | 3.3:+21031097 | MS.gene46785:CDS |
| AGGGTTATCATGCAGGAGAG+AGG | 0.624181 | 3.3:+21032633 | MS.gene46785:intron |
| GAAGAACCAAAACATGTCCA+AGG | 0.624877 | 3.3:-21032754 | None:intergenic |
| TTATCAGAAAATCTTCCAAG+TGG | 0.629968 | 3.3:+21030779 | MS.gene46785:CDS |
| GTAAGGCTGAAAGGTTGGAG+GGG | 0.641584 | 3.3:+21031378 | MS.gene46785:CDS |
| TGGGGAGAAGATGATGAAAG+GGG | 0.644916 | 3.3:-21030954 | None:intergenic |
| TAAAGAAGTTGAGCAAAACA+AGG | 0.647922 | 3.3:+21032662 | MS.gene46785:CDS |
| GGAGAAGATGATGAAAGGGG+TGG | 0.706516 | 3.3:-21030951 | None:intergenic |
| CACATTGCAAAACAGTACGG+AGG | 0.716231 | 3.3:+21031100 | MS.gene46785:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTTTGATTTTTATTAA+TGG | + | chr3.3:21030012-21030031 | MS.gene46785:intron | 10.0% |
| !!! | AAGTTTTGATTTTTATTAAT+GGG | + | chr3.3:21030013-21030032 | MS.gene46785:intron | 10.0% |
| !!! | TTTCTATTAATTTTTGTTTT+TGG | + | chr3.3:21030721-21030740 | MS.gene46785:intron | 10.0% |
| !! | GATTAAACTATTCATATTTA+TGG | + | chr3.3:21032226-21032245 | MS.gene46785:intron | 15.0% |
| !! | TATGAATAGTTTAATCTTAT+AGG | - | chr3.3:21032222-21032241 | None:intergenic | 15.0% |
| !!! | AAAGTTTGGATTTTAATTAA+TGG | + | chr3.3:21030249-21030268 | MS.gene46785:intron | 15.0% |
| !!! | AAAGTTTGGTTTTTTATTAA+TGG | + | chr3.3:21030094-21030113 | MS.gene46785:intron | 15.0% |
| !!! | AAGTTTGGATTTTAATTAAT+GGG | + | chr3.3:21030250-21030269 | MS.gene46785:intron | 15.0% |
| !!! | AAGTTTGGTTTTTTATTAAT+GGG | + | chr3.3:21030095-21030114 | MS.gene46785:intron | 15.0% |
| !!! | AGATTTTCTGATAAATAAAA+TGG | - | chr3.3:21030773-21030792 | None:intergenic | 15.0% |
| !!! | TTTAATATTTCTATAGAGAT+GGG | + | chr3.3:21030910-21030929 | MS.gene46785:intron | 15.0% |
| !! | AAAAATATTACAATCTCTGA+TGG | + | chr3.3:21032717-21032736 | MS.gene46785:CDS | 20.0% |
| !! | AAACTATTTAATGTGTCAAT+TGG | + | chr3.3:21032459-21032478 | MS.gene46785:intron | 20.0% |
| !! | AATAGTTTAATCTTATAGGT+TGG | - | chr3.3:21032218-21032237 | None:intergenic | 20.0% |
| !! | AGTAACATAGGAAAAAAATT+AGG | - | chr3.3:21030474-21030493 | None:intergenic | 20.0% |
| !! | AGTGAAACATTACATATATT+CGG | + | chr3.3:21031806-21031825 | MS.gene46785:intron | 20.0% |
| !! | ATAGTTTAATCTTATAGGTT+GGG | - | chr3.3:21032217-21032236 | None:intergenic | 20.0% |
| !! | ATCTATCAATGAATAACTTT+AGG | - | chr3.3:21032324-21032343 | None:intergenic | 20.0% |
| !! | GTAACATAGGAAAAAAATTA+GGG | - | chr3.3:21030473-21030492 | None:intergenic | 20.0% |
| !! | TATACAAAAATGATTAACCA+AGG | - | chr3.3:21032002-21032021 | None:intergenic | 20.0% |
| !!! | AATTTTGCATTTTTCTCAAT+TGG | + | chr3.3:21029930-21029949 | MS.gene46785:intron | 20.0% |
| !!! | AGATTGCATTTTTCTTAATT+GGG | + | chr3.3:21030220-21030239 | MS.gene46785:intron | 20.0% |
| !!! | ATTTTGCATTTTTCTCAATT+GGG | + | chr3.3:21029931-21029950 | MS.gene46785:intron | 20.0% |
| !!! | CTTAGTTATTTTATAGCTTA+TGG | + | chr3.3:21030539-21030558 | MS.gene46785:intron | 20.0% |
| !!! | GAATAACTTGTACAAATTAT+TGG | + | chr3.3:21031834-21031853 | MS.gene46785:intron | 20.0% |
| !!! | GTTTAATATTTCTATAGAGA+TGG | + | chr3.3:21030909-21030928 | MS.gene46785:intron | 20.0% |
| !!! | TAGATTGCATTTTTCTTAAT+TGG | + | chr3.3:21030219-21030238 | MS.gene46785:intron | 20.0% |
| !!! | TTATCTTTTTATAACTTCAG+TGG | + | chr3.3:21031862-21031881 | MS.gene46785:intron | 20.0% |
| ! | AATATATCGCTCTCTTAATA+TGG | - | chr3.3:21032375-21032394 | None:intergenic | 25.0% |
| ! | AATCTGAATTTATCATCTTG+GGG | - | chr3.3:21030975-21030994 | None:intergenic | 25.0% |
| ! | GAATCTGAATTTATCATCTT+GGG | - | chr3.3:21030976-21030995 | None:intergenic | 25.0% |
| ! | TGAATCTGAATTTATCATCT+TGG | - | chr3.3:21030977-21030996 | None:intergenic | 25.0% |
| !! | AGATTGCATTTTTCTCAATT+AGG | + | chr3.3:21029983-21030002 | MS.gene46785:intron | 25.0% |
| !! | AGATTGCATTTTTCTCAATT+GGG | + | chr3.3:21029983-21030002 | MS.gene46785:intron | 25.0% |
| !! | TAGATTGCATTTTTCTCAAT+TGG | + | chr3.3:21029982-21030001 | MS.gene46785:intron | 25.0% |
| !!! | ATAGTTCTGAGCTTTATTTA+TGG | + | chr3.3:21030510-21030529 | MS.gene46785:intron | 25.0% |
| !!! | ATATTTTTGTTGTTTAGTGC+TGG | - | chr3.3:21032705-21032724 | None:intergenic | 25.0% |
| !!! | CAATTAGGTTTGTTAAAGTT+TGG | + | chr3.3:21030080-21030099 | MS.gene46785:intron | 25.0% |
| !!! | TAATTGGGTTTGTTAAAGTT+TGG | + | chr3.3:21030235-21030254 | MS.gene46785:intron | 25.0% |
| !!! | TTTCAAGTTATTCCTCAATT+GGG | + | chr3.3:21029900-21029919 | MS.gene46785:intron | 25.0% |
| !!! | TTTGGTTTTTCCTTTTTTGA+AGG | + | chr3.3:21030739-21030758 | MS.gene46785:intron | 25.0% |
| AATTGAGGAGTAACCAAATT+CGG | - | chr3.3:21031023-21031042 | None:intergenic | 30.0% | |
| ACAGGCATAAAAAGTAACAT+AGG | - | chr3.3:21030486-21030505 | None:intergenic | 30.0% | |
| AGCAAAATCTCAAATTCCTA+TGG | - | chr3.3:21030858-21030877 | None:intergenic | 30.0% | |
| ATAGAAAGCAACATAGAGAA+AGG | - | chr3.3:21030633-21030652 | None:intergenic | 30.0% | |
| ATAGTACAAGAATTGGAGTA+CGG | - | chr3.3:21031977-21031996 | None:intergenic | 30.0% | |
| CAAGAATTGAAAACCTTGAA+AGG | - | chr3.3:21030364-21030383 | None:intergenic | 30.0% | |
| CAAGGAAATAGTACAAGAAT+TGG | - | chr3.3:21031984-21032003 | None:intergenic | 30.0% | |
| CAATTCTTGTACTATTTCCT+TGG | + | chr3.3:21031982-21032001 | MS.gene46785:intron | 30.0% | |
| CTAAATCGTGTTAATTTAGC+TGG | + | chr3.3:21030423-21030442 | MS.gene46785:intron | 30.0% | |
| CTTTGTGATTAGAAAAGACT+TGG | - | chr3.3:21031933-21031952 | None:intergenic | 30.0% | |
| GATACAAGTACCTTCTAATT+TGG | - | chr3.3:21030808-21030827 | None:intergenic | 30.0% | |
| TAAAGAAGTTGAGCAAAACA+AGG | + | chr3.3:21032662-21032681 | MS.gene46785:CDS | 30.0% | |
| TAGAAAGCAACATAGAGAAA+GGG | - | chr3.3:21030632-21030651 | None:intergenic | 30.0% | |
| TCGATTGGAAAAATCTAGAA+TGG | + | chr3.3:21029744-21029763 | MS.gene46785:CDS | 30.0% | |
| TCTCAAATTCCTATGGAAAA+AGG | - | chr3.3:21030851-21030870 | None:intergenic | 30.0% | |
| TCTGTGATTTGATTCAGAAT+AGG | - | chr3.3:21031176-21031195 | None:intergenic | 30.0% | |
| TGAAAACCAAAATCCGAATT+TGG | + | chr3.3:21031007-21031026 | MS.gene46785:CDS | 30.0% | |
| TTATCAGAAAATCTTCCAAG+TGG | + | chr3.3:21030779-21030798 | MS.gene46785:CDS | 30.0% | |
| TTGTTCTCAGTTTCTAACTT+TGG | + | chr3.3:21030664-21030683 | MS.gene46785:intron | 30.0% | |
| TTTAATGTGTCAATTGGAAG+AGG | + | chr3.3:21032465-21032484 | MS.gene46785:intron | 30.0% | |
| ! | ATGGACTATTTACAAGACAA+TGG | + | chr3.3:21032245-21032264 | MS.gene46785:intron | 30.0% |
| ! | CAAAGAGTTGATTTCAATGA+AGG | - | chr3.3:21031128-21031147 | None:intergenic | 30.0% |
| ! | CATTACTACTTCTCTAAAGA+GGG | - | chr3.3:21032590-21032609 | None:intergenic | 30.0% |
| ! | GTTTTATAGGTTGCTAAGTT+AGG | + | chr3.3:21031750-21031769 | MS.gene46785:intron | 30.0% |
| !! | ATTTTTCCAATCGATTTTCG+CGG | - | chr3.3:21029738-21029757 | None:intergenic | 30.0% |
| !! | CTTTCAAGTTATTCCTCAAT+TGG | + | chr3.3:21029899-21029918 | MS.gene46785:intron | 30.0% |
| AAATTTGAGAGACCCAATTG+AGG | - | chr3.3:21029915-21029934 | None:intergenic | 35.0% | |
| AACCTATAAAACACTGACAC+TGG | - | chr3.3:21031742-21031761 | None:intergenic | 35.0% | |
| ACATTGTCAAACCAAAGTGT+CGG | - | chr3.3:21031622-21031641 | None:intergenic | 35.0% | |
| ACCACGTTTAATGTGTCAAT+TGG | + | chr3.3:21032500-21032519 | MS.gene46785:intron | 35.0% | |
| AGAAAATTTGAACCCTGTAG+AGG | + | chr3.3:21031250-21031269 | MS.gene46785:CDS | 35.0% | |
| AGATGGGAAAATCAAGAGAA+GGG | + | chr3.3:21030926-21030945 | MS.gene46785:CDS | 35.0% | |
| AGCTTCATCATCATTGTTGT+TGG | - | chr3.3:21029846-21029865 | None:intergenic | 35.0% | |
| ATAAAACACTGACACTGGTA+TGG | - | chr3.3:21031737-21031756 | None:intergenic | 35.0% | |
| ATTGGAAACGACACTTAAAC+TGG | - | chr3.3:21031712-21031731 | None:intergenic | 35.0% | |
| CTGCAATGAATTAAAGAGAC+TGG | + | chr3.3:21031199-21031218 | MS.gene46785:CDS | 35.0% | |
| GAAAATTTGAACCCTGTAGA+GGG | + | chr3.3:21031251-21031270 | MS.gene46785:CDS | 35.0% | |
| GACAAGAAGTCAACAAACTT+GGG | - | chr3.3:21029809-21029828 | None:intergenic | 35.0% | |
| GGAGAATGTAAGACAAAAGA+GGG | + | chr3.3:21032081-21032100 | MS.gene46785:CDS | 35.0% | |
| TAGTACAAGAATTGGAGTAC+GGG | - | chr3.3:21031976-21031995 | None:intergenic | 35.0% | |
| TCCAATTGACACATTAAACG+TGG | - | chr3.3:21032504-21032523 | None:intergenic | 35.0% | |
| TGACACATTGCAAAACAGTA+CGG | + | chr3.3:21031097-21031116 | MS.gene46785:CDS | 35.0% | |
| TGGAGAATGTAAGACAAAAG+AGG | + | chr3.3:21032080-21032099 | MS.gene46785:CDS | 35.0% | |
| TGGATAGAAGAGAGAAAGAA+AGG | + | chr3.3:21031336-21031355 | MS.gene46785:CDS | 35.0% | |
| TTCTCCAAGTCAAGAGTTAT+AGG | - | chr3.3:21032067-21032086 | None:intergenic | 35.0% | |
| TTGAAAACCTTGAAAGGACT+TGG | - | chr3.3:21030358-21030377 | None:intergenic | 35.0% | |
| TTGCTAAGTTAGGCAATCTA+GGG | + | chr3.3:21031760-21031779 | MS.gene46785:intron | 35.0% | |
| TTGGAAACGACACTTAAACT+GGG | - | chr3.3:21031711-21031730 | None:intergenic | 35.0% | |
| TTTACGATCCAAATCGATGT+AGG | + | chr3.3:21031551-21031570 | MS.gene46785:intron | 35.0% | |
| ! | ACAACAATGATGATGAAGCT+TGG | + | chr3.3:21029846-21029865 | MS.gene46785:CDS | 35.0% |
| ! | ACACACTTTCCTTTTTCCAT+AGG | + | chr3.3:21030839-21030858 | MS.gene46785:intron | 35.0% |
| ! | CCATTACTACTTCTCTAAAG+AGG | - | chr3.3:21032591-21032610 | None:intergenic | 35.0% |
| ! | CCTCTTTAGAGAAGTAGTAA+TGG | + | chr3.3:21032588-21032607 | MS.gene46785:intron | 35.0% |
| ! | GAGTAACCAAATTCGGATTT+TGG | - | chr3.3:21031016-21031035 | None:intergenic | 35.0% |
| ! | GCAAAAAGATCTGATGATGA+GGG | + | chr3.3:21032614-21032633 | MS.gene46785:intron | 35.0% |
| ! | TACCAGTGTCAGTGTTTTAT+AGG | + | chr3.3:21031737-21031756 | MS.gene46785:intron | 35.0% |
| ! | TGCAAAAAGATCTGATGATG+AGG | + | chr3.3:21032613-21032632 | MS.gene46785:intron | 35.0% |
| !! | CGAAGAATTTGTTTTCGAGA+CGG | + | chr3.3:21031150-21031169 | MS.gene46785:CDS | 35.0% |
| !! | CTATGTTGCTTTCTATGCTT+AGG | + | chr3.3:21030637-21030656 | MS.gene46785:intron | 35.0% |
| !! | GTTGTTGGTGTTATGATTGA+GGG | - | chr3.3:21029831-21029850 | None:intergenic | 35.0% |
| !! | TGTTGTTGGTGTTATGATTG+AGG | - | chr3.3:21029832-21029851 | None:intergenic | 35.0% |
| !! | TTTTTCCAATCGATTTTCGC+GGG | - | chr3.3:21029737-21029756 | None:intergenic | 35.0% |
| !!! | AGAAAATCCTCTGCTGTTTT+TGG | - | chr3.3:21030328-21030347 | None:intergenic | 35.0% |
| !!! | GAAAATCCTCTGCTGTTTTT+GGG | - | chr3.3:21030327-21030346 | None:intergenic | 35.0% |
| AAGCTCAGAACTATGAACAC+AGG | - | chr3.3:21030504-21030523 | None:intergenic | 40.0% | |
| AAGGAAACCACTGCTTGAAA+TGG | + | chr3.3:21031355-21031374 | MS.gene46785:CDS | 40.0% | |
| AATAACCCTAACCCCTCAAA+AGG | + | chr3.3:21032166-21032185 | MS.gene46785:CDS | 40.0% | |
| AGAAAGAGAGAAAACTGACC+AGG | - | chr3.3:21029881-21029900 | None:intergenic | 40.0% | |
| AGGAAACCACTGCTTGAAAT+GGG | + | chr3.3:21031356-21031375 | MS.gene46785:CDS | 40.0% | |
| AGTACAAGAATTGGAGTACG+GGG | - | chr3.3:21031975-21031994 | None:intergenic | 40.0% | |
| CAAGTGGTGACCAAATTAGA+AGG | + | chr3.3:21030795-21030814 | MS.gene46785:CDS | 40.0% | |
| CATGCCTATAACTCTTGACT+TGG | + | chr3.3:21032060-21032079 | MS.gene46785:CDS | 40.0% | |
| CCAAATCGATGTAGGACATA+TGG | + | chr3.3:21031559-21031578 | MS.gene46785:intron | 40.0% | |
| CGACACTTAAACTGGGATAA+CGG | - | chr3.3:21031704-21031723 | None:intergenic | 40.0% | |
| CTTCTAATTTGGTCACCACT+TGG | - | chr3.3:21030797-21030816 | None:intergenic | 40.0% | |
| CTTCTTCTTTACCCTCTACA+GGG | - | chr3.3:21031265-21031284 | None:intergenic | 40.0% | |
| GAAGAACCAAAACATGTCCA+AGG | - | chr3.3:21032757-21032776 | None:intergenic | 40.0% | |
| GAGATGGGAAAATCAAGAGA+AGG | + | chr3.3:21030925-21030944 | MS.gene46785:intron | 40.0% | |
| GATTTCACGAGCTGACATTA+AGG | + | chr3.3:21032341-21032360 | MS.gene46785:intron | 40.0% | |
| GCAAAACAAGGAAGTTGCAA+AGG | + | chr3.3:21032674-21032693 | MS.gene46785:CDS | 40.0% | |
| GGACAAGAAGTCAACAAACT+TGG | - | chr3.3:21029810-21029829 | None:intergenic | 40.0% | |
| GGACTTCTTGCCTTCAAAAA+AGG | - | chr3.3:21030752-21030771 | None:intergenic | 40.0% | |
| GTTGCTAAGTTAGGCAATCT+AGG | + | chr3.3:21031759-21031778 | MS.gene46785:intron | 40.0% | |
| TCCTCAATTGAAGTCCAAGA+AGG | + | chr3.3:21031034-21031053 | MS.gene46785:CDS | 40.0% | |
| TCTTCTTCTTTACCCTCTAC+AGG | - | chr3.3:21031266-21031285 | None:intergenic | 40.0% | |
| TGACTTGATCAAAGCCTTCT+TGG | - | chr3.3:21031051-21031070 | None:intergenic | 40.0% | |
| TGGAAGAGAAACAAAAGCCT+TGG | + | chr3.3:21032737-21032756 | MS.gene46785:CDS | 40.0% | |
| TGTAGAGGGTAAAGAAGAAG+AGG | + | chr3.3:21031265-21031284 | MS.gene46785:CDS | 40.0% | |
| TTGAAATGGGTAAGGCTGAA+AGG | + | chr3.3:21031369-21031388 | MS.gene46785:CDS | 40.0% | |
| TTGGGGAGAAGATGATGAAA+GGG | - | chr3.3:21030958-21030977 | None:intergenic | 40.0% | |
| ! | ATTTTGCAGAAGACCTGATG+AGG | + | chr3.3:21032030-21032049 | MS.gene46785:intron | 40.0% |
| ! | CAAAAGCCTTGGACATGTTT+TGG | + | chr3.3:21032748-21032767 | MS.gene46785:CDS | 40.0% |
| ! | CCATATGTCCTACATCGATT+TGG | - | chr3.3:21031562-21031581 | None:intergenic | 40.0% |
| !! | AATCTAGGGTCAAGTTGGAT+GGG | + | chr3.3:21031774-21031793 | MS.gene46785:intron | 40.0% |
| !! | CAGCTTGATAATGTTGTGCA+AGG | - | chr3.3:21032783-21032802 | None:intergenic | 40.0% |
| AATGGGTAAGGCTGAAAGGT+TGG | + | chr3.3:21031373-21031392 | MS.gene46785:CDS | 45.0% | |
| ACCACTGCTTGAAATGGGTA+AGG | + | chr3.3:21031361-21031380 | MS.gene46785:CDS | 45.0% | |
| ACTGACACTGGTATGGACAT+TGG | - | chr3.3:21031730-21031749 | None:intergenic | 45.0% | |
| ATGTCTAACACCGACACATG+CGG | + | chr3.3:21031638-21031657 | MS.gene46785:intron | 45.0% | |
| CAATCACCCAAAAACAGCAG+AGG | + | chr3.3:21030318-21030337 | MS.gene46785:CDS | 45.0% | |
| CACATTGCAAAACAGTACGG+AGG | + | chr3.3:21031100-21031119 | MS.gene46785:CDS | 45.0% | |
| CAGATCACCAAGTCCTTTCA+AGG | + | chr3.3:21030348-21030367 | MS.gene46785:CDS | 45.0% | |
| CTTGGGGAGAAGATGATGAA+AGG | - | chr3.3:21030959-21030978 | None:intergenic | 45.0% | |
| GATGATGAGGGTTATCATGC+AGG | + | chr3.3:21032626-21032645 | MS.gene46785:intron | 45.0% | |
| GCCTTCTTGGACTTCAATTG+AGG | - | chr3.3:21031038-21031057 | None:intergenic | 45.0% | |
| GCTATGTAACACCGACACTT+TGG | + | chr3.3:21031608-21031627 | MS.gene46785:intron | 45.0% | |
| TGGAGGGGATGTGTGTTAAA+GGG | + | chr3.3:21031393-21031412 | MS.gene46785:CDS | 45.0% | |
| TGGGGAGAAGATGATGAAAG+GGG | - | chr3.3:21030957-21030976 | None:intergenic | 45.0% | |
| TTGGAGGGGATGTGTGTTAA+AGG | + | chr3.3:21031392-21031411 | MS.gene46785:CDS | 45.0% | |
| ! | TAGGCAATCTAGGGTCAAGT+TGG | + | chr3.3:21031769-21031788 | MS.gene46785:intron | 45.0% |
| !! | CAATCTAGGGTCAAGTTGGA+TGG | + | chr3.3:21031773-21031792 | MS.gene46785:intron | 45.0% |
| !! | TGGAACCTTTTGAGGGGTTA+GGG | - | chr3.3:21032174-21032193 | None:intergenic | 45.0% |
| !!! | GAAGCTTGGTTTTGCAAACC+TGG | + | chr3.3:21029860-21029879 | MS.gene46785:CDS | 45.0% |
| !!! | ATATTTATAAAATTTTAGTT+AGG | + | chr3.3:21032428-21032447 | MS.gene46785:intron | 5.0% |
| !!! | ATTTTTTTTTTTTTATCAAT+TGG | + | chr3.3:21030164-21030183 | MS.gene46785:intron | 5.0% |
| !!! | TTTTTTTTTTTTTATCAATT+GGG | + | chr3.3:21030165-21030184 | MS.gene46785:intron | 5.0% |
| ACATACCATTAGCCGGGATC+TGG | - | chr3.3:21032194-21032213 | None:intergenic | 50.0% | |
| AGAGACTGGCGTTAAGAGCT+AGG | + | chr3.3:21031213-21031232 | MS.gene46785:CDS | 50.0% | |
| AGCCCAGCAGAAAAACACTG+CGG | - | chr3.3:21032145-21032164 | None:intergenic | 50.0% | |
| AGGGTTATCATGCAGGAGAG+AGG | + | chr3.3:21032633-21032652 | MS.gene46785:intron | 50.0% | |
| AGTGAACGCTTTGGCAGAGT+TGG | + | chr3.3:21031316-21031335 | MS.gene46785:CDS | 50.0% | |
| ATGTAACCACCCGCATGTGT+CGG | - | chr3.3:21031651-21031670 | None:intergenic | 50.0% | |
| CAACAAACTTGGGTGCGTTG+AGG | - | chr3.3:21029799-21029818 | None:intergenic | 50.0% | |
| CCTCAAAAGGTTCCAGATCC+CGG | + | chr3.3:21032179-21032198 | MS.gene46785:CDS | 50.0% | |
| GAAAAACACTGCGGAGAAGG+AGG | - | chr3.3:21032136-21032155 | None:intergenic | 50.0% | |
| GAGACTGGCGTTAAGAGCTA+GGG | + | chr3.3:21031214-21031233 | MS.gene46785:CDS | 50.0% | |
| GCAGAAAAACACTGCGGAGA+AGG | - | chr3.3:21032139-21032158 | None:intergenic | 50.0% | |
| GCCTTACCCATTTCAAGCAG+TGG | - | chr3.3:21031365-21031384 | None:intergenic | 50.0% | |
| GGAGAAGATGATGAAAGGGG+TGG | - | chr3.3:21030954-21030973 | None:intergenic | 50.0% | |
| GGTAAGGCTGAAAGGTTGGA+GGG | + | chr3.3:21031377-21031396 | MS.gene46785:CDS | 50.0% | |
| GGTTGGGACATACCATTAGC+CGG | - | chr3.3:21032201-21032220 | None:intergenic | 50.0% | |
| GTAAGGCTGAAAGGTTGGAG+GGG | + | chr3.3:21031378-21031397 | MS.gene46785:CDS | 50.0% | |
| GTTGGGACATACCATTAGCC+GGG | - | chr3.3:21032200-21032219 | None:intergenic | 50.0% | |
| TGGAACCCGCGAAAATCGAT+TGG | + | chr3.3:21029729-21029748 | MS.gene46785:CDS | 50.0% | |
| TGTCTAACACCGACACATGC+GGG | + | chr3.3:21031639-21031658 | MS.gene46785:intron | 50.0% | |
| ! | AACTCTGCCAAAGCGTTCAC+TGG | - | chr3.3:21031317-21031336 | None:intergenic | 50.0% |
| ! | CTCCGCAGTGTTTTTCTGCT+GGG | + | chr3.3:21032140-21032159 | MS.gene46785:CDS | 50.0% |
| ! | GGCATGTTTTCTGCCTCATC+AGG | - | chr3.3:21032046-21032065 | None:intergenic | 50.0% |
| ! | TCTCCGCAGTGTTTTTCTGC+TGG | + | chr3.3:21032139-21032158 | MS.gene46785:CDS | 50.0% |
| !! | CGGGATCTGGAACCTTTTGA+GGG | - | chr3.3:21032181-21032200 | None:intergenic | 50.0% |
| !! | CTGGAACCTTTTGAGGGGTT+AGG | - | chr3.3:21032175-21032194 | None:intergenic | 50.0% |
| !! | GGGATCTGGAACCTTTTGAG+GGG | - | chr3.3:21032180-21032199 | None:intergenic | 50.0% |
| AGGTTCCAGATCCCGGCTAA+TGG | + | chr3.3:21032186-21032205 | MS.gene46785:CDS | 55.0% | |
| GGGTAAGGCTGAAAGGTTGG+AGG | + | chr3.3:21031376-21031395 | MS.gene46785:CDS | 55.0% | |
| !! | CCGGGATCTGGAACCTTTTG+AGG | - | chr3.3:21032182-21032201 | None:intergenic | 55.0% |
| CTAACACCGACACATGCGGG+TGG | + | chr3.3:21031642-21031661 | MS.gene46785:intron | 60.0% | |
| GACCTCGCCAGTGAACGCTT+TGG | + | chr3.3:21031307-21031326 | MS.gene46785:CDS | 60.0% | |
| ! | TGCCAAAGCGTTCACTGGCG+AGG | - | chr3.3:21031312-21031331 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 21029728 | 21032803 | 21029728 | ID=MS.gene46785 |
| chr3.3 | mRNA | 21029728 | 21032803 | 21029728 | ID=MS.gene46785.t1;Parent=MS.gene46785 |
| chr3.3 | exon | 21029728 | 21029881 | 21029728 | ID=MS.gene46785.t1.exon1;Parent=MS.gene46785.t1 |
| chr3.3 | CDS | 21029728 | 21029881 | 21029728 | ID=cds.MS.gene46785.t1;Parent=MS.gene46785.t1 |
| chr3.3 | exon | 21030314 | 21030369 | 21030314 | ID=MS.gene46785.t1.exon2;Parent=MS.gene46785.t1 |
| chr3.3 | CDS | 21030314 | 21030369 | 21030314 | ID=cds.MS.gene46785.t1;Parent=MS.gene46785.t1 |
| chr3.3 | exon | 21030761 | 21030816 | 21030761 | ID=MS.gene46785.t1.exon3;Parent=MS.gene46785.t1 |
| chr3.3 | CDS | 21030761 | 21030816 | 21030761 | ID=cds.MS.gene46785.t1;Parent=MS.gene46785.t1 |
| chr3.3 | exon | 21030926 | 21031432 | 21030926 | ID=MS.gene46785.t1.exon4;Parent=MS.gene46785.t1 |
| chr3.3 | CDS | 21030926 | 21031432 | 21030926 | ID=cds.MS.gene46785.t1;Parent=MS.gene46785.t1 |
| chr3.3 | exon | 21032039 | 21032207 | 21032039 | ID=MS.gene46785.t1.exon5;Parent=MS.gene46785.t1 |
| chr3.3 | CDS | 21032039 | 21032207 | 21032039 | ID=cds.MS.gene46785.t1;Parent=MS.gene46785.t1 |
| chr3.3 | exon | 21032648 | 21032803 | 21032648 | ID=MS.gene46785.t1.exon6;Parent=MS.gene46785.t1 |
| chr3.3 | CDS | 21032648 | 21032803 | 21032648 | ID=cds.MS.gene46785.t1;Parent=MS.gene46785.t1 |
| Gene Sequence |
| Protein sequence |
