Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46848.t1 | KEH22715.1 | 96.3 | 600 | 22 | 0 | 1 | 600 | 6 | 605 | 0.00E+00 | 1142.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46848.t1 | F4J7S8 | 54.6 | 597 | 238 | 12 | 5 | 595 | 4 | 573 | 5.6e-168 | 592.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46848.t1 | A0A072UA43 | 96.3 | 600 | 22 | 0 | 1 | 600 | 6 | 605 | 0.0e+00 | 1142.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene50746 | MS.gene46848 | PPI |
MS.gene68793 | MS.gene46848 | PPI |
MS.gene063145 | MS.gene46848 | PPI |
MS.gene003698 | MS.gene46848 | PPI |
MS.gene46848 | MS.gene014259 | PPI |
MS.gene46848 | MS.gene68200 | PPI |
MS.gene23312 | MS.gene46848 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46848.t1 | MTR_7g056587 | 96.333 | 600 | 22 | 0 | 1 | 600 | 6 | 605 | 0.0 | 1201 |
MS.gene46848.t1 | MTR_7g056587 | 95.987 | 598 | 24 | 0 | 3 | 600 | 22 | 619 | 0.0 | 1167 |
MS.gene46848.t1 | MTR_7g056587 | 95.593 | 590 | 24 | 1 | 1 | 590 | 6 | 593 | 0.0 | 1139 |
MS.gene46848.t1 | MTR_7g056587 | 95.726 | 585 | 23 | 1 | 6 | 590 | 3 | 585 | 0.0 | 1130 |
MS.gene46848.t1 | MTR_7g056587 | 96.458 | 480 | 17 | 0 | 121 | 600 | 1 | 480 | 0.0 | 967 |
MS.gene46848.t1 | MTR_3g117100 | 43.710 | 620 | 303 | 14 | 7 | 590 | 14 | 623 | 1.17e-165 | 486 |
MS.gene46848.t1 | MTR_1g022480 | 45.695 | 604 | 297 | 11 | 14 | 589 | 20 | 620 | 2.09e-163 | 481 |
MS.gene46848.t1 | MTR_1g022480 | 45.364 | 604 | 297 | 11 | 14 | 589 | 20 | 618 | 3.51e-163 | 480 |
MS.gene46848.t1 | MTR_1g022480 | 44.845 | 611 | 297 | 12 | 14 | 589 | 20 | 625 | 2.64e-160 | 473 |
MS.gene46848.t1 | MTR_3g112150 | 42.881 | 597 | 298 | 11 | 9 | 590 | 4 | 572 | 3.00e-148 | 440 |
MS.gene46848.t1 | MTR_5g021050 | 52.488 | 402 | 170 | 6 | 36 | 436 | 11 | 392 | 1.19e-145 | 430 |
MS.gene46848.t1 | MTR_5g021050 | 52.488 | 402 | 170 | 6 | 36 | 436 | 11 | 392 | 1.35e-145 | 430 |
MS.gene46848.t1 | MTR_4g070810 | 62.623 | 305 | 113 | 1 | 45 | 348 | 48 | 352 | 2.44e-145 | 434 |
MS.gene46848.t1 | MTR_8g076880 | 43.691 | 531 | 241 | 10 | 66 | 572 | 42 | 538 | 1.38e-141 | 422 |
MS.gene46848.t1 | MTR_4g070720 | 42.683 | 574 | 277 | 12 | 14 | 571 | 12 | 549 | 5.21e-139 | 416 |
MS.gene46848.t1 | MTR_1g022480 | 45.972 | 509 | 245 | 9 | 106 | 589 | 31 | 534 | 1.80e-138 | 414 |
MS.gene46848.t1 | MTR_8g071000 | 43.130 | 575 | 283 | 10 | 41 | 582 | 33 | 596 | 2.22e-138 | 416 |
MS.gene46848.t1 | MTR_3g010190 | 59.649 | 342 | 136 | 2 | 7 | 346 | 5 | 346 | 1.18e-137 | 411 |
MS.gene46848.t1 | MTR_3g117090 | 41.506 | 571 | 276 | 13 | 21 | 571 | 18 | 550 | 3.14e-133 | 401 |
MS.gene46848.t1 | MTR_3g117090 | 58.621 | 319 | 129 | 2 | 21 | 339 | 18 | 333 | 1.56e-128 | 388 |
MS.gene46848.t1 | MTR_4g070790 | 52.809 | 267 | 126 | 0 | 80 | 346 | 61 | 327 | 1.51e-102 | 316 |
MS.gene46848.t1 | MTR_6g015645 | 64.851 | 202 | 71 | 0 | 139 | 340 | 8 | 209 | 1.06e-96 | 303 |
MS.gene46848.t1 | MTR_5g012460 | 43.976 | 332 | 176 | 4 | 16 | 344 | 32 | 356 | 2.71e-94 | 296 |
MS.gene46848.t1 | MTR_4g070780 | 47.826 | 276 | 113 | 4 | 66 | 341 | 26 | 270 | 2.19e-81 | 261 |
MS.gene46848.t1 | MTR_4g070730 | 45.139 | 288 | 130 | 4 | 107 | 393 | 55 | 315 | 6.77e-76 | 247 |
MS.gene46848.t1 | MTR_6g034285 | 50.505 | 99 | 49 | 0 | 139 | 237 | 195 | 293 | 1.16e-24 | 107 |
MS.gene46848.t1 | MTR_3g098530 | 29.699 | 266 | 140 | 10 | 67 | 315 | 29 | 264 | 6.48e-21 | 93.6 |
MS.gene46848.t1 | MTR_3g060670 | 28.992 | 238 | 150 | 5 | 98 | 327 | 26 | 252 | 1.08e-17 | 85.5 |
MS.gene46848.t1 | MTR_2g027140 | 29.439 | 214 | 135 | 5 | 103 | 310 | 38 | 241 | 1.12e-17 | 85.1 |
MS.gene46848.t1 | MTR_8g096170 | 31.048 | 248 | 143 | 11 | 71 | 313 | 21 | 245 | 3.79e-14 | 73.2 |
MS.gene46848.t1 | MTR_8g095360 | 27.650 | 217 | 138 | 6 | 104 | 313 | 182 | 386 | 1.11e-13 | 74.3 |
MS.gene46848.t1 | MTR_2g027140 | 28.061 | 196 | 125 | 5 | 121 | 310 | 1 | 186 | 2.02e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46848.t1 | AT3G24840 | 54.348 | 598 | 241 | 11 | 4 | 595 | 3 | 574 | 0.0 | 624 |
MS.gene46848.t1 | AT3G24840 | 54.348 | 598 | 241 | 11 | 4 | 595 | 3 | 574 | 0.0 | 624 |
MS.gene46848.t1 | AT3G24840 | 54.348 | 598 | 241 | 11 | 4 | 595 | 3 | 574 | 0.0 | 624 |
MS.gene46848.t1 | AT3G24840 | 54.515 | 598 | 239 | 12 | 4 | 595 | 3 | 573 | 0.0 | 621 |
MS.gene46848.t1 | AT3G24840 | 54.515 | 598 | 239 | 12 | 4 | 595 | 3 | 573 | 0.0 | 621 |
MS.gene46848.t1 | AT3G24840 | 54.515 | 598 | 239 | 12 | 4 | 595 | 3 | 573 | 0.0 | 621 |
MS.gene46848.t1 | AT3G24840 | 54.515 | 598 | 239 | 12 | 4 | 595 | 3 | 573 | 0.0 | 621 |
MS.gene46848.t1 | AT4G39170 | 43.248 | 585 | 304 | 9 | 7 | 571 | 14 | 590 | 4.61e-159 | 469 |
MS.gene46848.t1 | AT4G39170 | 43.225 | 583 | 305 | 8 | 7 | 571 | 14 | 588 | 1.97e-158 | 468 |
MS.gene46848.t1 | AT2G21520 | 41.013 | 612 | 320 | 11 | 7 | 583 | 14 | 619 | 2.21e-152 | 452 |
MS.gene46848.t1 | AT2G21520 | 41.013 | 612 | 320 | 11 | 7 | 583 | 18 | 623 | 2.22e-152 | 453 |
MS.gene46848.t1 | AT2G21520 | 41.013 | 612 | 320 | 11 | 7 | 583 | 18 | 623 | 2.22e-152 | 453 |
MS.gene46848.t1 | AT4G36490 | 42.254 | 568 | 270 | 11 | 26 | 576 | 5 | 531 | 2.61e-150 | 444 |
MS.gene46848.t1 | AT2G21540 | 42.629 | 563 | 271 | 10 | 15 | 568 | 10 | 529 | 3.94e-149 | 441 |
MS.gene46848.t1 | AT2G21540 | 42.629 | 563 | 271 | 10 | 15 | 568 | 10 | 529 | 3.94e-149 | 441 |
MS.gene46848.t1 | AT2G21540 | 42.629 | 563 | 271 | 10 | 15 | 568 | 10 | 529 | 3.94e-149 | 441 |
MS.gene46848.t1 | AT2G21540 | 42.629 | 563 | 271 | 10 | 15 | 568 | 10 | 529 | 3.94e-149 | 441 |
MS.gene46848.t1 | AT2G21540 | 42.908 | 564 | 262 | 11 | 15 | 568 | 10 | 523 | 6.74e-148 | 438 |
MS.gene46848.t1 | AT2G21540 | 42.908 | 564 | 262 | 11 | 15 | 568 | 10 | 523 | 6.74e-148 | 438 |
MS.gene46848.t1 | AT1G55690 | 43.811 | 614 | 289 | 13 | 16 | 583 | 14 | 617 | 9.32e-148 | 440 |
MS.gene46848.t1 | AT1G55690 | 43.811 | 614 | 289 | 13 | 16 | 583 | 14 | 617 | 1.16e-147 | 440 |
MS.gene46848.t1 | AT1G55690 | 43.811 | 614 | 289 | 13 | 16 | 583 | 14 | 617 | 1.16e-147 | 440 |
MS.gene46848.t1 | AT1G55690 | 43.811 | 614 | 289 | 13 | 16 | 583 | 14 | 617 | 1.16e-147 | 440 |
MS.gene46848.t1 | AT1G55690 | 43.811 | 614 | 289 | 13 | 16 | 583 | 14 | 617 | 1.16e-147 | 440 |
MS.gene46848.t1 | AT2G18180 | 42.068 | 561 | 260 | 12 | 36 | 576 | 19 | 534 | 4.57e-147 | 436 |
MS.gene46848.t1 | AT2G18180 | 42.068 | 561 | 260 | 12 | 36 | 576 | 19 | 534 | 5.82e-147 | 436 |
MS.gene46848.t1 | AT4G39180 | 42.609 | 575 | 284 | 13 | 10 | 576 | 5 | 541 | 1.21e-146 | 435 |
MS.gene46848.t1 | AT4G39180 | 42.609 | 575 | 284 | 13 | 10 | 576 | 5 | 541 | 1.21e-146 | 435 |
MS.gene46848.t1 | AT4G39180 | 42.957 | 575 | 283 | 14 | 10 | 576 | 5 | 542 | 2.05e-146 | 434 |
MS.gene46848.t1 | AT5G56160 | 42.114 | 577 | 303 | 12 | 23 | 585 | 15 | 574 | 5.73e-139 | 416 |
MS.gene46848.t1 | AT5G56160 | 42.114 | 577 | 303 | 12 | 23 | 585 | 15 | 574 | 5.73e-139 | 416 |
MS.gene46848.t1 | AT4G34580 | 41.637 | 562 | 296 | 10 | 21 | 576 | 7 | 542 | 7.48e-139 | 415 |
MS.gene46848.t1 | AT4G34580 | 41.637 | 562 | 296 | 10 | 21 | 576 | 7 | 542 | 7.48e-139 | 415 |
MS.gene46848.t1 | AT1G75370 | 40.580 | 621 | 310 | 12 | 7 | 590 | 14 | 612 | 1.22e-137 | 414 |
MS.gene46848.t1 | AT1G75370 | 40.620 | 613 | 306 | 11 | 7 | 583 | 14 | 604 | 2.38e-135 | 410 |
MS.gene46848.t1 | AT2G18180 | 42.254 | 497 | 227 | 9 | 100 | 576 | 7 | 463 | 1.24e-133 | 399 |
MS.gene46848.t1 | AT2G18180 | 42.254 | 497 | 227 | 9 | 100 | 576 | 7 | 463 | 1.41e-133 | 399 |
MS.gene46848.t1 | AT1G19650 | 38.725 | 612 | 319 | 11 | 14 | 590 | 18 | 608 | 4.38e-133 | 402 |
MS.gene46848.t1 | AT2G16380 | 40.180 | 555 | 303 | 8 | 23 | 576 | 9 | 535 | 1.45e-127 | 386 |
MS.gene46848.t1 | AT2G16380 | 40.180 | 555 | 303 | 8 | 23 | 576 | 9 | 535 | 1.45e-127 | 386 |
MS.gene46848.t1 | AT1G19650 | 55.215 | 326 | 143 | 3 | 14 | 339 | 18 | 340 | 4.81e-126 | 378 |
MS.gene46848.t1 | AT5G56160 | 56.000 | 325 | 139 | 3 | 23 | 345 | 15 | 337 | 9.94e-126 | 379 |
MS.gene46848.t1 | AT2G18180 | 41.387 | 476 | 219 | 9 | 121 | 576 | 1 | 436 | 1.69e-123 | 372 |
MS.gene46848.t1 | AT1G19650 | 39.394 | 528 | 266 | 9 | 98 | 590 | 28 | 536 | 1.09e-119 | 365 |
MS.gene46848.t1 | AT2G16380 | 40.821 | 463 | 244 | 8 | 121 | 582 | 1 | 434 | 3.29e-105 | 325 |
MS.gene46848.t1 | AT5G47510 | 48.649 | 259 | 133 | 0 | 78 | 336 | 26 | 284 | 1.67e-89 | 281 |
MS.gene46848.t1 | AT5G47510 | 48.649 | 259 | 133 | 0 | 78 | 336 | 25 | 283 | 3.09e-89 | 281 |
MS.gene46848.t1 | AT5G47510 | 48.649 | 259 | 133 | 0 | 78 | 336 | 26 | 284 | 3.40e-89 | 281 |
MS.gene46848.t1 | AT5G47510 | 49.115 | 226 | 115 | 0 | 111 | 336 | 2 | 227 | 1.12e-79 | 254 |
MS.gene46848.t1 | AT5G47730 | 30.000 | 210 | 133 | 4 | 106 | 310 | 41 | 241 | 2.83e-18 | 87.0 |
MS.gene46848.t1 | AT5G47730 | 30.000 | 210 | 133 | 4 | 106 | 310 | 41 | 241 | 2.83e-18 | 87.0 |
MS.gene46848.t1 | AT1G55840 | 30.081 | 246 | 149 | 7 | 78 | 310 | 6 | 241 | 9.57e-18 | 85.1 |
MS.gene46848.t1 | AT1G55840 | 29.545 | 220 | 139 | 5 | 98 | 310 | 4 | 214 | 1.16e-16 | 81.6 |
MS.gene46848.t1 | AT1G01630 | 31.280 | 211 | 122 | 8 | 106 | 313 | 55 | 245 | 2.22e-15 | 77.0 |
MS.gene46848.t1 | AT5G47730 | 28.718 | 195 | 125 | 4 | 121 | 310 | 1 | 186 | 1.50e-14 | 75.1 |
MS.gene46848.t1 | AT5G47730 | 28.718 | 195 | 125 | 4 | 121 | 310 | 1 | 186 | 1.50e-14 | 75.1 |
Find 126 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTATCAATGTCAAACTTTC+TGG | 0.107098 | 7.4:+46437618 | None:intergenic |
GAAAGTATATACAATTATTT+TGG | 0.177223 | 7.4:+46433625 | None:intergenic |
GCAACAAAGCCAACGAAATT+TGG | 0.209682 | 7.4:-46433180 | MS.gene46848:CDS |
ACATAGGAAATTAGCTTCTT+TGG | 0.223417 | 7.4:+46429231 | None:intergenic |
CACTCATCCTCAGAGGTTTC+AGG | 0.242229 | 7.4:+46438372 | None:intergenic |
TTGGCAGAGGTTGCGGGATT+TGG | 0.245490 | 7.4:-46429025 | MS.gene46848:CDS |
TCCCGCAACCTCTGCCAAAT+TGG | 0.260370 | 7.4:+46429030 | None:intergenic |
ATCAACATCACCAACTTCTT+TGG | 0.271039 | 7.4:+46431118 | None:intergenic |
AGATGAGAGGAGTAGAAGTT+TGG | 0.288981 | 7.4:-46438397 | MS.gene46848:CDS |
CGGATATAAAGGAGCCAATT+TGG | 0.295504 | 7.4:-46429044 | MS.gene46848:CDS |
TAGCATGGTCACTCATAAAT+TGG | 0.316701 | 7.4:-46433115 | MS.gene46848:intron |
GTTCCAGAGCAGATTGTTAG+AGG | 0.330860 | 7.4:-46433520 | MS.gene46848:CDS |
ATGATGTCATACTTTCAAAA+TGG | 0.332799 | 7.4:+46433307 | None:intergenic |
CAAATTGGCTCCTTTATATC+CGG | 0.334464 | 7.4:+46429045 | None:intergenic |
CCAAGACATCCTCCATCATT+TGG | 0.336385 | 7.4:+46433359 | None:intergenic |
GAGTCGTTGAGTCGTATAAA+AGG | 0.338314 | 7.4:-46428934 | MS.gene46848:CDS |
ATTAACAACCCCGGATATAA+AGG | 0.348145 | 7.4:-46429055 | MS.gene46848:CDS |
GCCAATTTGGCAGAGGTTGC+GGG | 0.352833 | 7.4:-46429031 | MS.gene46848:CDS |
TTCTCACGAGGAATTGTTCT+CGG | 0.353462 | 7.4:+46428973 | None:intergenic |
AATAGGTATACTCATCTTCC+AGG | 0.355517 | 7.4:+46428135 | None:intergenic |
GTTACGGCGACTGATGATTC+TGG | 0.366621 | 7.4:-46438448 | None:intergenic |
ATTCACGGCTTCTTCCTCTT+TGG | 0.367424 | 7.4:+46438212 | None:intergenic |
CTCTATTGGAGAAAGGAGTA+TGG | 0.370264 | 7.4:-46437571 | MS.gene46848:CDS |
TATGTAGGATTTCGTATATA+AGG | 0.388118 | 7.4:-46437299 | MS.gene46848:intron |
CAACTTCCACCCAGAAAATC+AGG | 0.390012 | 7.4:+46433389 | None:intergenic |
GTAGTGGGTTCAAGCTAGTA+TGG | 0.398113 | 7.4:-46433685 | MS.gene46848:CDS |
AGAGCATATCTGCCCACATC+TGG | 0.406835 | 7.4:+46437590 | None:intergenic |
CAGCTCACATTCTCGCTAGA+AGG | 0.408987 | 7.4:+46432903 | None:intergenic |
ATGCCTTCTTGGTTGGTTGT+TGG | 0.409707 | 7.4:+46429116 | None:intergenic |
TGTGGGCAGATATGCTCTAT+TGG | 0.412952 | 7.4:-46437585 | MS.gene46848:CDS |
AGCCAATTTGGCAGAGGTTG+CGG | 0.422478 | 7.4:-46429032 | MS.gene46848:CDS |
AGCTGAGCTTGCTGAGTCAC+TGG | 0.422989 | 7.4:-46428632 | MS.gene46848:CDS |
TTCATTGTCAATGCTGGTAG+TGG | 0.424448 | 7.4:-46433701 | MS.gene46848:CDS |
CAAGACATCCTCCATCATTT+GGG | 0.424664 | 7.4:+46433360 | None:intergenic |
AGTCTCGAGCTAGATCTCTT+AGG | 0.425872 | 7.4:-46438344 | MS.gene46848:CDS |
GTTGCTTCTGATGTTGATCC+AGG | 0.430312 | 7.4:+46432957 | None:intergenic |
CAGCATTGACAATGAACATC+TGG | 0.433020 | 7.4:+46433708 | None:intergenic |
AACAATAATGCCAAAGAAGT+TGG | 0.444155 | 7.4:-46431128 | MS.gene46848:CDS |
GCATTGTGTGATAATTATCA+TGG | 0.445665 | 7.4:+46438145 | None:intergenic |
TGATAATTATCATGGGAATC+TGG | 0.446600 | 7.4:+46438153 | None:intergenic |
AAAGTTTGACATTGATAAAA+CGG | 0.449185 | 7.4:-46437614 | MS.gene46848:CDS |
AGAAGCTAATTTCCTATGTC+AGG | 0.450183 | 7.4:-46429227 | MS.gene46848:CDS |
AAATTGGCTCCTTTATATCC+GGG | 0.459277 | 7.4:+46429046 | None:intergenic |
CTAGTATGGAATACAGCAAA+AGG | 0.461742 | 7.4:-46433671 | MS.gene46848:CDS |
CATTATTGTTTGCCTCAACT+AGG | 0.466176 | 7.4:+46431141 | None:intergenic |
GCAGAGGTTGCGGGATTTGG+AGG | 0.478420 | 7.4:-46429022 | MS.gene46848:CDS |
AACAATTCCTCGTGAGAAAG+AGG | 0.480731 | 7.4:-46428968 | MS.gene46848:CDS |
TGCCAGTCTACACGAATTCA+CGG | 0.481982 | 7.4:+46438197 | None:intergenic |
GAGAGCTGGATTCCACTGGC+TGG | 0.485435 | 7.4:+46429085 | None:intergenic |
CAAGGCTCACTTATAGTCTC+AGG | 0.490076 | 7.4:-46438299 | MS.gene46848:CDS |
TGTTAATTGATTGAGAGAGC+TGG | 0.490138 | 7.4:+46429071 | None:intergenic |
TATGCAGTATTTGCAGCACT+TGG | 0.496661 | 7.4:-46429162 | MS.gene46848:CDS |
GAAGAACTTCCAAATTTCGT+TGG | 0.502786 | 7.4:+46433171 | None:intergenic |
TAACCTCTAACAATCTGCTC+TGG | 0.504827 | 7.4:+46433517 | None:intergenic |
GGTGACATTCATCAACTTGA+TGG | 0.510932 | 7.4:+46437180 | None:intergenic |
GCCTCAACTAGGTTGCAGAT+AGG | 0.516350 | 7.4:+46431152 | None:intergenic |
CACCCAGAAAATCAGGAAGT+TGG | 0.516687 | 7.4:+46433396 | None:intergenic |
ACTGATTGCACAAAGGTTGA+AGG | 0.517097 | 7.4:+46432927 | None:intergenic |
CAGATGTTCATTGTCAATGC+TGG | 0.517230 | 7.4:-46433707 | MS.gene46848:CDS |
CCAAATGATGGAGGATGTCT+TGG | 0.520026 | 7.4:-46433359 | MS.gene46848:CDS |
TTGATAAAACGGTCCAGATG+TGG | 0.520171 | 7.4:-46437603 | MS.gene46848:CDS |
TGTTAGAGGTTATAGACTCA+TGG | 0.523254 | 7.4:-46433506 | MS.gene46848:intron |
AATTTATGAGTGACCATGCT+AGG | 0.523447 | 7.4:+46433117 | None:intergenic |
TTGAGAGAGCTGGATTCCAC+TGG | 0.524978 | 7.4:+46429081 | None:intergenic |
TGTCATACTTTCAAAATGGA+AGG | 0.528732 | 7.4:+46433311 | None:intergenic |
TTGGATCTAACAAGGGACCT+TGG | 0.533848 | 7.4:-46433340 | MS.gene46848:CDS |
CCAGTGTATATTGAGAGACT+TGG | 0.541011 | 7.4:-46437214 | MS.gene46848:CDS |
AGCCGTGAATTCGTGTAGAC+TGG | 0.549622 | 7.4:-46438199 | MS.gene46848:CDS |
CGTATATAAGGAGTTTGAAG+TGG | 0.554986 | 7.4:-46437287 | MS.gene46848:CDS |
TTAATGCTGCAGGTTTCTGA+AGG | 0.556005 | 7.4:-46437641 | MS.gene46848:intron |
AGTTGTTCATGCCCAAATGA+TGG | 0.558876 | 7.4:-46433371 | MS.gene46848:CDS |
GTTCAACGTTATTACCCTCA+TGG | 0.566507 | 7.4:-46437265 | MS.gene46848:CDS |
AGATATGCTCTATTGGAGAA+AGG | 0.568841 | 7.4:-46437578 | MS.gene46848:CDS |
TAAAGGAGCCAATTTGGCAG+AGG | 0.574281 | 7.4:-46429038 | MS.gene46848:CDS |
ATAGGTATACTCATCTTCCA+GGG | 0.575238 | 7.4:+46428136 | None:intergenic |
TAATAGTTCAAGAAGATGAG+AGG | 0.575754 | 7.4:-46438410 | MS.gene46848:CDS |
TTTGCTGCTATAGAACATGC+AGG | 0.579513 | 7.4:+46437094 | None:intergenic |
TTCCTATGTCAGGAGTACAT+TGG | 0.581773 | 7.4:-46429217 | MS.gene46848:CDS |
TGATAAAACGGTCCAGATGT+GGG | 0.584450 | 7.4:-46437602 | MS.gene46848:CDS |
ACCTATCTGCAACCTAGTTG+AGG | 0.587036 | 7.4:-46431153 | MS.gene46848:CDS |
GTCATACTTTCAAAATGGAA+GGG | 0.587968 | 7.4:+46433312 | None:intergenic |
AAAATGGAAGGGTCATTCCA+AGG | 0.592390 | 7.4:+46433323 | None:intergenic |
CATTGTGTGATAATTATCAT+GGG | 0.600169 | 7.4:+46438146 | None:intergenic |
TCATTGTCAATGCTGGTAGT+GGG | 0.602158 | 7.4:-46433700 | MS.gene46848:CDS |
AGCACTGAAATATCTGAACC+TGG | 0.603140 | 7.4:-46432975 | MS.gene46848:CDS |
CTGCCAACAACCAACCAAGA+AGG | 0.607907 | 7.4:-46429119 | MS.gene46848:CDS |
CTGAAACCTCTGAGGATGAG+TGG | 0.608958 | 7.4:-46438371 | MS.gene46848:CDS |
TGCATGGTGTGGACAAAGAG+GGG | 0.609270 | 7.4:-46437240 | MS.gene46848:CDS |
TGACTTGCAAAAGACAAGGA+AGG | 0.610536 | 7.4:-46428902 | MS.gene46848:intron |
TACAGGGGACAAAATCATGT+TGG | 0.611303 | 7.4:-46428179 | MS.gene46848:intron |
ATGCATGGTGTGGACAAAGA+GGG | 0.611322 | 7.4:-46437241 | MS.gene46848:CDS |
TATTACCCTCATGGTATGCA+TGG | 0.611391 | 7.4:-46437256 | MS.gene46848:CDS |
AATTGGCTCCTTTATATCCG+GGG | 0.612008 | 7.4:+46429047 | None:intergenic |
AGGATGTCTTGGATCTAACA+AGG | 0.613016 | 7.4:-46433348 | MS.gene46848:CDS |
ATCCAATGTACTCCTGACAT+AGG | 0.617075 | 7.4:+46429215 | None:intergenic |
CCAAGTCTCTCAATATACAC+TGG | 0.623189 | 7.4:+46437214 | None:intergenic |
GAGCAATGACTGCTTCAACA+AGG | 0.624288 | 7.4:-46438317 | MS.gene46848:CDS |
GTGACATTCATCAACTTGAT+GGG | 0.624480 | 7.4:+46437181 | None:intergenic |
AGATGTTCGGGATGCCAAAG+AGG | 0.626648 | 7.4:-46438226 | MS.gene46848:CDS |
CCCTCATGGTATGCATGGTG+TGG | 0.629363 | 7.4:-46437251 | MS.gene46848:CDS |
CACCGAGTCATATCCTAGCA+TGG | 0.636928 | 7.4:-46433130 | MS.gene46848:CDS |
TATGCATGGTGTGGACAAAG+AGG | 0.640193 | 7.4:-46437242 | MS.gene46848:CDS |
GACCATGCTAGGATATGACT+CGG | 0.641917 | 7.4:+46433128 | None:intergenic |
GCATCAGAAAATCCAGCCAG+TGG | 0.642065 | 7.4:-46429097 | MS.gene46848:CDS |
AGAATATCCTCTTTCTCACG+AGG | 0.648401 | 7.4:+46428961 | None:intergenic |
CTTCCGCCACTCATCCTCAG+AGG | 0.659075 | 7.4:+46438365 | None:intergenic |
TTGCTGCTATAGAACATGCA+GGG | 0.661177 | 7.4:+46437095 | None:intergenic |
ATAATTATCACACAATGCTG+AGG | 0.661865 | 7.4:-46438140 | MS.gene46848:intron |
CCACACCATGCATACCATGA+GGG | 0.664021 | 7.4:+46437251 | None:intergenic |
CTAGGTTGCAGATAGGTGCA+CGG | 0.665393 | 7.4:+46431159 | None:intergenic |
TCTCAATCAATTAACAACCC+CGG | 0.665682 | 7.4:-46429064 | MS.gene46848:CDS |
GGAGGCAGTAGTGACTGAGA+TGG | 0.665960 | 7.4:-46429004 | MS.gene46848:CDS |
CATGTTCTATAGCAGCAAAG+CGG | 0.666814 | 7.4:-46437090 | MS.gene46848:CDS |
ACTACAATAATTGATGTGCA+CGG | 0.666903 | 7.4:-46437052 | MS.gene46848:CDS |
AATTTGACTTGCAAAAGACA+AGG | 0.678812 | 7.4:-46428906 | MS.gene46848:CDS |
AAACCTCTGAGGATGAGTGG+CGG | 0.687461 | 7.4:-46438368 | MS.gene46848:CDS |
TCCACACCATGCATACCATG+AGG | 0.688993 | 7.4:+46437250 | None:intergenic |
AATAATTGATGTGCACGGCG+TGG | 0.689010 | 7.4:-46437047 | MS.gene46848:intron |
GGATGTCTTGGATCTAACAA+GGG | 0.691292 | 7.4:-46433347 | MS.gene46848:CDS |
AGAAGGAACTGATTGCACAA+AGG | 0.692917 | 7.4:+46432920 | None:intergenic |
TTTGGAGCCTGAAACCTCTG+AGG | 0.697641 | 7.4:-46438379 | MS.gene46848:CDS |
ATGGTGTGGACAAAGAGGGG+CGG | 0.702284 | 7.4:-46437237 | MS.gene46848:CDS |
GAAGCGTAATAAGCGAGTAG+CGG | 0.706077 | 7.4:-46438277 | MS.gene46848:CDS |
TAGGTATACTCATCTTCCAG+GGG | 0.708380 | 7.4:+46428137 | None:intergenic |
TGTTCATGCCCAAATGATGG+AGG | 0.726201 | 7.4:-46433368 | MS.gene46848:CDS |
TGATGGCGATAATTACCCTG+AGG | 0.747686 | 7.4:-46436884 | MS.gene46848:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 46428146 | 46438457 | 46428146 | ID=MS.gene46848 |
chr7.4 | mRNA | 46428146 | 46438457 | 46428146 | ID=MS.gene46848.t1;Parent=MS.gene46848 |
chr7.4 | exon | 46438141 | 46438457 | 46438141 | ID=MS.gene46848.t1.exon1;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46438141 | 46438457 | 46438141 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46437552 | 46437651 | 46437552 | ID=MS.gene46848.t1.exon2;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46437552 | 46437651 | 46437552 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46437048 | 46437314 | 46437048 | ID=MS.gene46848.t1.exon3;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46437048 | 46437314 | 46437048 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46436885 | 46436962 | 46436885 | ID=MS.gene46848.t1.exon4;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46436885 | 46436962 | 46436885 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46433637 | 46433738 | 46433637 | ID=MS.gene46848.t1.exon5;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46433637 | 46433738 | 46433637 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46433507 | 46433556 | 46433507 | ID=MS.gene46848.t1.exon6;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46433507 | 46433556 | 46433507 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46433319 | 46433418 | 46433319 | ID=MS.gene46848.t1.exon7;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46433319 | 46433418 | 46433319 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46433116 | 46433220 | 46433116 | ID=MS.gene46848.t1.exon8;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46433116 | 46433220 | 46433116 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46432911 | 46433003 | 46432911 | ID=MS.gene46848.t1.exon9;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46432911 | 46433003 | 46432911 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46431111 | 46431195 | 46431111 | ID=MS.gene46848.t1.exon10;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46431111 | 46431195 | 46431111 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46428903 | 46429282 | 46428903 | ID=MS.gene46848.t1.exon11;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46428903 | 46429282 | 46428903 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46428606 | 46428680 | 46428606 | ID=MS.gene46848.t1.exon12;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46428606 | 46428680 | 46428606 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
chr7.4 | exon | 46428146 | 46428196 | 46428146 | ID=MS.gene46848.t1.exon13;Parent=MS.gene46848.t1 |
chr7.4 | CDS | 46428146 | 46428196 | 46428146 | ID=cds.MS.gene46848.t1;Parent=MS.gene46848.t1 |
Gene Sequence |
Protein sequence |