Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46932.t1 | RHN59531.1 | 43.9 | 164 | 63 | 4 | 135 | 269 | 122 | 285 | 2.20E-22 | 116.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46932.t1 | A0A072UTQ5 | 43.9 | 164 | 63 | 4 | 135 | 269 | 122 | 285 | 1.6e-22 | 116.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060634 | MS.gene46932 | -0.806101 | 9.69E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46932.t1 | MTR_4g032565 | 43.195 | 169 | 67 | 5 | 130 | 269 | 117 | 285 | 1.69e-31 | 118 |
| MS.gene46932.t1 | MTR_4g032585 | 43.195 | 169 | 67 | 5 | 130 | 269 | 117 | 285 | 2.20e-31 | 117 |
| MS.gene46932.t1 | MTR_8g064300 | 38.919 | 185 | 96 | 4 | 99 | 268 | 127 | 309 | 3.36e-29 | 112 |
| MS.gene46932.t1 | MTR_5g093790 | 38.021 | 192 | 102 | 4 | 92 | 268 | 194 | 383 | 3.22e-28 | 111 |
| MS.gene46932.t1 | MTR_7g110100 | 45.946 | 148 | 65 | 4 | 135 | 268 | 378 | 524 | 2.25e-25 | 105 |
| MS.gene46932.t1 | MTR_1g105785 | 40.541 | 148 | 71 | 3 | 138 | 268 | 379 | 526 | 2.68e-23 | 99.4 |
| MS.gene46932.t1 | MTR_3g108500 | 31.169 | 231 | 82 | 5 | 107 | 261 | 25 | 254 | 1.83e-22 | 93.6 |
| MS.gene46932.t1 | MTR_7g051400 | 39.583 | 144 | 70 | 3 | 138 | 264 | 357 | 500 | 7.82e-22 | 94.7 |
| MS.gene46932.t1 | MTR_2g040680 | 38.931 | 131 | 72 | 2 | 138 | 267 | 119 | 242 | 6.83e-20 | 86.3 |
| MS.gene46932.t1 | MTR_1g492690 | 33.333 | 138 | 74 | 3 | 138 | 257 | 173 | 310 | 6.29e-16 | 77.0 |
| MS.gene46932.t1 | MTR_1g115520 | 35.211 | 71 | 46 | 0 | 129 | 199 | 56 | 126 | 1.98e-12 | 63.9 |
| MS.gene46932.t1 | MTR_3g452170 | 40.000 | 120 | 57 | 4 | 163 | 268 | 333 | 451 | 4.04e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATAATATACATGATTT+TGG | 0.178118 | 4.3:+38278181 | None:intergenic |
| TGGGAAACAAATGTTGTTTA+AGG | 0.242210 | 4.3:-38277720 | MS.gene46932:CDS |
| GAAAGGCTTGCTGCAACTTT+AGG | 0.274755 | 4.3:-38279665 | MS.gene46932:CDS |
| TTCCCAACCACTTTGCTACT+TGG | 0.290059 | 4.3:+38277266 | None:intergenic |
| TGTGACTGTCCACAAAATTA+AGG | 0.297574 | 4.3:-38277609 | MS.gene46932:intron |
| ATGGGAACTTAAAGCATAAT+TGG | 0.316343 | 4.3:-38277685 | MS.gene46932:CDS |
| TAATCTCCATTCATCTCATT+TGG | 0.330111 | 4.3:-38279856 | MS.gene46932:intron |
| ATAGCACAGATGAGAATAGA+TGG | 0.415065 | 4.3:+38278543 | None:intergenic |
| TGTTTAATTGTGCAGGGAAC+CGG | 0.424669 | 4.3:-38277779 | MS.gene46932:intron |
| GTGTAGATCCGGCTGTTCTC+AGG | 0.427894 | 4.3:+38279925 | None:intergenic |
| AACGCTAGGTTTGAGGAATT+AGG | 0.434175 | 4.3:-38279885 | MS.gene46932:CDS |
| ATGTCCTACCATTGTTTGAC+AGG | 0.437862 | 4.3:-38278495 | MS.gene46932:intron |
| GTTGTTTAAGGTGGAATTCA+CGG | 0.447146 | 4.3:-38277708 | MS.gene46932:CDS |
| ATATCCTGAGATGTTGGTTA+TGG | 0.455803 | 4.3:-38277467 | MS.gene46932:CDS |
| GCTGATGAACGCTAGGTTTG+AGG | 0.467581 | 4.3:-38279892 | MS.gene46932:CDS |
| CGAGGTTGCAAGTGTAGATC+CGG | 0.469365 | 4.3:+38279914 | None:intergenic |
| ATCTATTCTCATCTGTGCTA+TGG | 0.472920 | 4.3:-38278541 | MS.gene46932:CDS |
| TTGCGAGTATCCAATTGATC+TGG | 0.475496 | 4.3:-38277753 | MS.gene46932:CDS |
| TTTAATAATTGCAGTTCCGT+TGG | 0.476199 | 4.3:-38278822 | MS.gene46932:intron |
| GAAACAAATGTTGTTTAAGG+TGG | 0.479313 | 4.3:-38277717 | MS.gene46932:CDS |
| TTGACGCAATGAACTTTGAC+AGG | 0.484199 | 4.3:+38277176 | None:intergenic |
| GAGATTGTTGCAGAGAAGAA+AGG | 0.502375 | 4.3:-38279682 | MS.gene46932:CDS |
| GACATACCAAATGAGATGAA+TGG | 0.509003 | 4.3:+38279850 | None:intergenic |
| CACCAAGTAGCAAAGTGGTT+GGG | 0.514111 | 4.3:-38277268 | MS.gene46932:CDS |
| CCCTCTTGAACATGCTCCAA+CGG | 0.524368 | 4.3:+38278806 | None:intergenic |
| CAACCTCGCTGATGAACGCT+AGG | 0.533506 | 4.3:-38279899 | MS.gene46932:CDS |
| ATTGCCATAACCAACATCTC+AGG | 0.534276 | 4.3:+38277463 | None:intergenic |
| ACTTTCTCTAGATTGGGTGT+TGG | 0.538747 | 4.3:-38279707 | MS.gene46932:intron |
| ATGAGAGACCTGAGAACAGC+CGG | 0.541466 | 4.3:-38279933 | MS.gene46932:CDS |
| TAGAACACTTGCAGCTAACA+AGG | 0.541533 | 4.3:-38278744 | MS.gene46932:intron |
| GTGGTTGGGAAAAGATTAGC+TGG | 0.541972 | 4.3:-38277254 | MS.gene46932:CDS |
| TTTAAGGTGGAATTCACGGA+TGG | 0.557502 | 4.3:-38277704 | MS.gene46932:CDS |
| TCATTGCGTCAAAGTTGAGA+AGG | 0.566953 | 4.3:-38277165 | MS.gene46932:CDS |
| TCCGTTGGAGCATGTTCAAG+AGG | 0.576223 | 4.3:-38278807 | MS.gene46932:CDS |
| AAAAGATTAGCTGGCAGCGT+GGG | 0.580966 | 4.3:-38277245 | MS.gene46932:CDS |
| ACACCAAGTAGCAAAGTGGT+TGG | 0.586766 | 4.3:-38277269 | MS.gene46932:CDS |
| AATTGGATACTCGCAACTAC+CGG | 0.587687 | 4.3:+38277760 | None:intergenic |
| CTCAGGTCTCTCATCGACAT+CGG | 0.590904 | 4.3:+38279942 | None:intergenic |
| TTAAGGTGGAATTCACGGAT+GGG | 0.591193 | 4.3:-38277703 | MS.gene46932:CDS |
| AACGTGGAAGAAACTGAAGT+TGG | 0.595322 | 4.3:-38277218 | MS.gene46932:CDS |
| ATAGATGGGCTACACATGCA+TGG | 0.596394 | 4.3:+38278558 | None:intergenic |
| TTGATTTATTAGGTGCTACA+CGG | 0.596474 | 4.3:-38278108 | MS.gene46932:intron |
| AATGGTAGGACATCAATGCT+TGG | 0.600102 | 4.3:+38278505 | None:intergenic |
| CGATGACAACATACATCAAG+TGG | 0.602815 | 4.3:+38277433 | None:intergenic |
| AACTTTAGGAACATTAATTG+CGG | 0.604320 | 4.3:-38279651 | MS.gene46932:CDS |
| AGCTTCTCTTGATAGCATAG+TGG | 0.608989 | 4.3:+38277660 | None:intergenic |
| CCGTTGGAGCATGTTCAAGA+GGG | 0.612238 | 4.3:-38278806 | MS.gene46932:CDS |
| TTTAGGAACATTAATTGCGG+TGG | 0.612421 | 4.3:-38279648 | MS.gene46932:intron |
| TATACCTGTCAAACAATGGT+AGG | 0.612513 | 4.3:+38278491 | None:intergenic |
| TTGCATATATCCTGAGATGT+TGG | 0.613483 | 4.3:-38277473 | MS.gene46932:CDS |
| TAGCACAGATGAGAATAGAT+GGG | 0.620099 | 4.3:+38278544 | None:intergenic |
| GGTTTATACCTGTCAAACAA+TGG | 0.623394 | 4.3:+38278487 | None:intergenic |
| TGCTGACAAGATTTGCAACA+AGG | 0.629992 | 4.3:-38277509 | MS.gene46932:intron |
| AAATACACCAAGTAGCAAAG+TGG | 0.642147 | 4.3:-38277273 | MS.gene46932:CDS |
| TGGCAGCGTGGGTTCGAACG+TGG | 0.648721 | 4.3:-38277234 | MS.gene46932:CDS |
| AACTGAGAGCAAATCAAACG+AGG | 0.670294 | 4.3:-38277300 | MS.gene46932:intron |
| GAAAAGATTAGCTGGCAGCG+TGG | 0.680628 | 4.3:-38277246 | MS.gene46932:CDS |
| AAACCTAGCGTTCATCAGCG+AGG | 0.714258 | 4.3:+38279896 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTATATTACTTTTTTT+CGG | - | chr4.3:38277679-38277698 | MS.gene46932:CDS | 10.0% |
| !! | AATATAATTCATAGATCAAA+AGG | + | chr4.3:38277670-38277689 | None:intergenic | 15.0% |
| !! | TTTATATAATCATAGATAGA+AGG | + | chr4.3:38278498-38278517 | None:intergenic | 15.0% |
| !!! | GTTAATATTACTGATTTTTA+AGG | + | chr4.3:38279045-38279064 | None:intergenic | 15.0% |
| !!! | TATTTTTCATCTATTGATAA+TGG | - | chr4.3:38278111-38278130 | MS.gene46932:intron | 15.0% |
| !!! | TCAAAATTATAATAATGGAA+AGG | + | chr4.3:38278673-38278692 | None:intergenic | 15.0% |
| !!! | TGTAAGCTTTAAATAATTAT+GGG | - | chr4.3:38279097-38279116 | MS.gene46932:intron | 15.0% |
| !!! | TTGTAAGCTTTAAATAATTA+TGG | - | chr4.3:38279096-38279115 | MS.gene46932:intron | 15.0% |
| !! | AAAATACACAGACATTTAAT+TGG | + | chr4.3:38278448-38278467 | None:intergenic | 20.0% |
| !! | AAACATGATAAAAGAATAGA+AGG | + | chr4.3:38277295-38277314 | None:intergenic | 20.0% |
| !! | AACATGATAAAAGAATAGAA+GGG | + | chr4.3:38277294-38277313 | None:intergenic | 20.0% |
| !! | ATAGAAATAAACACAAAGAA+TGG | + | chr4.3:38277622-38277641 | None:intergenic | 20.0% |
| !! | ATATTAGAAAGAGTTAAGTT+TGG | + | chr4.3:38278239-38278258 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAACGTCAAATT+AGG | + | chr4.3:38278862-38278881 | None:intergenic | 20.0% |
| !! | TAACTCACTATAATTTACTT+TGG | - | chr4.3:38278195-38278214 | MS.gene46932:CDS | 20.0% |
| !! | TTATATTTGCATCATATCAA+AGG | + | chr4.3:38278178-38278197 | None:intergenic | 20.0% |
| !! | TTATTTACTTTCTCTAGATT+GGG | - | chr4.3:38277386-38277405 | MS.gene46932:intron | 20.0% |
| !! | TTGAATTTAGAAAACAAAGA+AGG | - | chr4.3:38279274-38279293 | MS.gene46932:intron | 20.0% |
| !!! | AATTTCTTTTGATTAAGTCA+TGG | - | chr4.3:38277931-38277950 | MS.gene46932:intron | 20.0% |
| !!! | AGTGATAATATACATGATTT+TGG | + | chr4.3:38278921-38278940 | None:intergenic | 20.0% |
| !!! | ATTTGGTTACAATCATTTTA+CGG | - | chr4.3:38278827-38278846 | MS.gene46932:intron | 20.0% |
| !!! | CATCTATCTTTTGATTTATT+AGG | - | chr4.3:38278981-38279000 | MS.gene46932:intron | 20.0% |
| !!! | TTGTTTTCTAAATTCAAATG+TGG | + | chr4.3:38279271-38279290 | None:intergenic | 20.0% |
| !!! | TTTATTCCTAATTTTCTAGA+AGG | - | chr4.3:38277312-38277331 | MS.gene46932:intron | 20.0% |
| ! | AATCAAAAGATAGATGAGTT+AGG | + | chr4.3:38278977-38278996 | None:intergenic | 25.0% |
| ! | GTTATTTACTTTCTCTAGAT+TGG | - | chr4.3:38277385-38277404 | MS.gene46932:intron | 25.0% |
| ! | TATAATCATAGATAGAAGGA+TGG | + | chr4.3:38278494-38278513 | None:intergenic | 25.0% |
| !! | AAAACTCCTTCTAGAAAATT+AGG | + | chr4.3:38277321-38277340 | None:intergenic | 25.0% |
| !! | AACTTTAGGAACATTAATTG+CGG | - | chr4.3:38277448-38277467 | MS.gene46932:CDS | 25.0% |
| !! | TAGTTGTACAAGATTTTGTT+CGG | - | chr4.3:38279513-38279532 | MS.gene46932:intron | 25.0% |
| !! | TTTTATGCAGTGATGATTTA+TGG | - | chr4.3:38277338-38277357 | MS.gene46932:intron | 25.0% |
| !!! | AATTGTTGTTTAATTGTGCA+GGG | - | chr4.3:38279314-38279333 | MS.gene46932:intron | 25.0% |
| !!! | CGAGGTTTTAAGTTTTTAAT+TGG | - | chr4.3:38279716-38279735 | MS.gene46932:intron | 25.0% |
| !!! | TAATTGTTGTTTAATTGTGC+AGG | - | chr4.3:38279313-38279332 | MS.gene46932:intron | 25.0% |
| !!! | TATATTACTTTTTTTCGGCT+AGG | - | chr4.3:38277684-38277703 | MS.gene46932:CDS | 25.0% |
| AAAATGGTTTCATCATAACG+TGG | + | chr4.3:38277837-38277856 | None:intergenic | 30.0% | |
| AAACTGATTGATGAGAAGTA+TGG | + | chr4.3:38278636-38278655 | None:intergenic | 30.0% | |
| AACAACAATTATTGCCACTA+TGG | + | chr4.3:38279304-38279323 | None:intergenic | 30.0% | |
| AATCTAATCTAACTCGGATA+CGG | + | chr4.3:38278733-38278752 | None:intergenic | 30.0% | |
| ACAAAAACATCCAGATCAAT+TGG | + | chr4.3:38279359-38279378 | None:intergenic | 30.0% | |
| AGAAGTTCCTCAATGATTTA+AGG | - | chr4.3:38277997-38278016 | MS.gene46932:intron | 30.0% | |
| ATGAAGTCTCTCTAAGTAAT+AGG | + | chr4.3:38277805-38277824 | None:intergenic | 30.0% | |
| ATGGGAACTTAAAGCATAAT+TGG | - | chr4.3:38279414-38279433 | MS.gene46932:intron | 30.0% | |
| ATTCGCAATCTAATCTAACT+CGG | + | chr4.3:38278739-38278758 | None:intergenic | 30.0% | |
| GAAAACGTAACATATACTTG+TGG | + | chr4.3:38279694-38279713 | None:intergenic | 30.0% | |
| GATTCAATGAAGAACAATCA+GGG | + | chr4.3:38278414-38278433 | None:intergenic | 30.0% | |
| GCAAAACACTGATATTCAAT+TGG | + | chr4.3:38278386-38278405 | None:intergenic | 30.0% | |
| TAATCTCCATTCATCTCATT+TGG | - | chr4.3:38277243-38277262 | MS.gene46932:CDS | 30.0% | |
| TGAAGTCTCTCTAAGTAATA+GGG | + | chr4.3:38277804-38277823 | None:intergenic | 30.0% | |
| TGATTCAATGAAGAACAATC+AGG | + | chr4.3:38278415-38278434 | None:intergenic | 30.0% | |
| TTTAATAATTGCAGTTCCGT+TGG | - | chr4.3:38278277-38278296 | MS.gene46932:intron | 30.0% | |
| ! | GAAACAAATGTTGTTTAAGG+TGG | - | chr4.3:38279382-38279401 | MS.gene46932:intron | 30.0% |
| ! | GTACAACTACCTTAATTTTG+TGG | + | chr4.3:38279502-38279521 | None:intergenic | 30.0% |
| ! | TATATGTTACGTTTTCAACG+AGG | - | chr4.3:38279698-38279717 | MS.gene46932:CDS | 30.0% |
| ! | TGGGAAACAAATGTTGTTTA+AGG | - | chr4.3:38279379-38279398 | MS.gene46932:intron | 30.0% |
| ! | TTGATTTATTAGGTGCTACA+CGG | - | chr4.3:38278991-38279010 | MS.gene46932:intron | 30.0% |
| !! | ATTGATCTGGATGTTTTTGT+TGG | - | chr4.3:38279359-38279378 | MS.gene46932:intron | 30.0% |
| !! | TTGATCTGGATGTTTTTGTT+GGG | - | chr4.3:38279360-38279379 | MS.gene46932:intron | 30.0% |
| !!! | AAACCATTTTTAGTTATGCC+AGG | - | chr4.3:38277847-38277866 | MS.gene46932:intron | 30.0% |
| !!! | ACACAATCAGGTAGTTTTAT+GGG | - | chr4.3:38279220-38279239 | MS.gene46932:intron | 30.0% |
| !!! | TTTGTTTGTTTTAGCACCAT+TGG | - | chr4.3:38278698-38278717 | MS.gene46932:intron | 30.0% |
| AAATACACCAAGTAGCAAAG+TGG | - | chr4.3:38279826-38279845 | MS.gene46932:intron | 35.0% | |
| AATTCACACGTTGAAGATGA+CGG | - | chr4.3:38277711-38277730 | MS.gene46932:CDS | 35.0% | |
| AGTCCTGGCATAACTAAAAA+TGG | + | chr4.3:38277853-38277872 | None:intergenic | 35.0% | |
| ATAGCACAGATGAGAATAGA+TGG | + | chr4.3:38278559-38278578 | None:intergenic | 35.0% | |
| ATAGGGAAAAGTGAAATACG+TGG | + | chr4.3:38277787-38277806 | None:intergenic | 35.0% | |
| ATCTAATCTAACTCGGATAC+GGG | + | chr4.3:38278732-38278751 | None:intergenic | 35.0% | |
| ATCTATTCTCATCTGTGCTA+TGG | - | chr4.3:38278558-38278577 | MS.gene46932:CDS | 35.0% | |
| CAACGTTTGTTTGTATGACA+GGG | - | chr4.3:38278882-38278901 | MS.gene46932:intron | 35.0% | |
| CAATGTTCAAATTGAAGTCC+TGG | + | chr4.3:38277868-38277887 | None:intergenic | 35.0% | |
| GAACTTGATGTTGAATACGT+AGG | - | chr4.3:38278792-38278811 | MS.gene46932:CDS | 35.0% | |
| GACATACCAAATGAGATGAA+TGG | + | chr4.3:38277252-38277271 | None:intergenic | 35.0% | |
| GGTTTATACCTGTCAAACAA+TGG | + | chr4.3:38278615-38278634 | None:intergenic | 35.0% | |
| TAGCACAGATGAGAATAGAT+GGG | + | chr4.3:38278558-38278577 | None:intergenic | 35.0% | |
| TATACCTGTCAAACAATGGT+AGG | + | chr4.3:38278611-38278630 | None:intergenic | 35.0% | |
| TCACTTGCCTTAAATCATTG+AGG | + | chr4.3:38278007-38278026 | None:intergenic | 35.0% | |
| TGTGACTGTCCACAAAATTA+AGG | - | chr4.3:38279490-38279509 | MS.gene46932:intron | 35.0% | |
| TTCGCATCTAATCATGTAGA+TGG | - | chr4.3:38278065-38278084 | MS.gene46932:intron | 35.0% | |
| TTGCATATATCCTGAGATGT+TGG | - | chr4.3:38279626-38279645 | MS.gene46932:intron | 35.0% | |
| TTTAGGAACATTAATTGCGG+TGG | - | chr4.3:38277451-38277470 | MS.gene46932:CDS | 35.0% | |
| ! | ATATCCTGAGATGTTGGTTA+TGG | - | chr4.3:38279632-38279651 | MS.gene46932:intron | 35.0% |
| ! | GTAGGTTATTGCTGCTTATT+TGG | - | chr4.3:38278810-38278829 | MS.gene46932:CDS | 35.0% |
| ! | GTTGTTTAAGGTGGAATTCA+CGG | - | chr4.3:38279391-38279410 | MS.gene46932:intron | 35.0% |
| !! | CACACAATCAGGTAGTTTTA+TGG | - | chr4.3:38279219-38279238 | MS.gene46932:intron | 35.0% |
| !! | CATGGTTGAATTACTGATTC+AGG | - | chr4.3:38277949-38277968 | MS.gene46932:intron | 35.0% |
| !! | GTGGTTGATGAAACTTATGT+GGG | - | chr4.3:38277363-38277382 | MS.gene46932:intron | 35.0% |
| !! | TCATGTAGATGGTTGATAGT+TGG | - | chr4.3:38278076-38278095 | MS.gene46932:intron | 35.0% |
| !! | TGTGGTTGATGAAACTTATG+TGG | - | chr4.3:38277362-38277381 | MS.gene46932:intron | 35.0% |
| !!! | TGATTTGCTCTCAGTTTTAG+TGG | + | chr4.3:38279795-38279814 | None:intergenic | 35.0% |
| AACGCTAGGTTTGAGGAATT+AGG | - | chr4.3:38277214-38277233 | MS.gene46932:CDS | 40.0% | |
| AACGTGGAAGAAACTGAAGT+TGG | - | chr4.3:38279881-38279900 | MS.gene46932:CDS | 40.0% | |
| AACTGAGAGCAAATCAAACG+AGG | - | chr4.3:38279799-38279818 | MS.gene46932:intron | 40.0% | |
| AATGGTAGGACATCAATGCT+TGG | + | chr4.3:38278597-38278616 | None:intergenic | 40.0% | |
| AATTGGATACTCGCAACTAC+CGG | + | chr4.3:38279342-38279361 | None:intergenic | 40.0% | |
| ACTTTCTCTAGATTGGGTGT+TGG | - | chr4.3:38277392-38277411 | MS.gene46932:intron | 40.0% | |
| ATGTCCTACCATTGTTTGAC+AGG | - | chr4.3:38278604-38278623 | MS.gene46932:intron | 40.0% | |
| ATTAGGATTCAAGCCATTGC+AGG | + | chr4.3:38277524-38277543 | None:intergenic | 40.0% | |
| ATTGCCATAACCAACATCTC+AGG | + | chr4.3:38279639-38279658 | None:intergenic | 40.0% | |
| CATCAAGTACAGGACATATG+TGG | - | chr4.3:38278767-38278786 | MS.gene46932:CDS | 40.0% | |
| CGATGACAACATACATCAAG+TGG | + | chr4.3:38279669-38279688 | None:intergenic | 40.0% | |
| GAAAAGTGAAATACGTGGAG+GGG | + | chr4.3:38277782-38277801 | None:intergenic | 40.0% | |
| GAGAGCGAGAAACAAACATT+AGG | + | chr4.3:38277541-38277560 | None:intergenic | 40.0% | |
| GAGATTGTTGCAGAGAAGAA+AGG | - | chr4.3:38277417-38277436 | MS.gene46932:intron | 40.0% | |
| GCAACGTTTGTTTGTATGAC+AGG | - | chr4.3:38278881-38278900 | MS.gene46932:intron | 40.0% | |
| GCAGTGATGATTTATGGTTG+TGG | - | chr4.3:38277344-38277363 | MS.gene46932:intron | 40.0% | |
| GGAAAAGTGAAATACGTGGA+GGG | + | chr4.3:38277783-38277802 | None:intergenic | 40.0% | |
| GGCAAGTGAAGAAGAAATGA+TGG | - | chr4.3:38278018-38278037 | MS.gene46932:intron | 40.0% | |
| TACACTTGAGTCACACAATC+AGG | - | chr4.3:38279208-38279227 | MS.gene46932:intron | 40.0% | |
| TAGAACACTTGCAGCTAACA+AGG | - | chr4.3:38278355-38278374 | MS.gene46932:intron | 40.0% | |
| TAGAAGCTTATGCACGAAGA+AGG | - | chr4.3:38278142-38278161 | MS.gene46932:intron | 40.0% | |
| TCATTGCGTCAAAGTTGAGA+AGG | - | chr4.3:38279934-38279953 | MS.gene46932:CDS | 40.0% | |
| TCTAATCTAACTCGGATACG+GGG | + | chr4.3:38278731-38278750 | None:intergenic | 40.0% | |
| TGCTGACAAGATTTGCAACA+AGG | - | chr4.3:38279590-38279609 | MS.gene46932:intron | 40.0% | |
| TGGAATCACCACTCAAGTAA+TGG | + | chr4.3:38279775-38279794 | None:intergenic | 40.0% | |
| TGTAGAAGCCATTACTTGAG+TGG | - | chr4.3:38279764-38279783 | MS.gene46932:intron | 40.0% | |
| TGTTTAATTGTGCAGGGAAC+CGG | - | chr4.3:38279320-38279339 | MS.gene46932:intron | 40.0% | |
| TTAAGGTGGAATTCACGGAT+GGG | - | chr4.3:38279396-38279415 | MS.gene46932:intron | 40.0% | |
| TTGACGCAATGAACTTTGAC+AGG | + | chr4.3:38279926-38279945 | None:intergenic | 40.0% | |
| TTGCGAGTATCCAATTGATC+TGG | - | chr4.3:38279346-38279365 | MS.gene46932:intron | 40.0% | |
| ! | AGCTTCTCTTGATAGCATAG+TGG | + | chr4.3:38279442-38279461 | None:intergenic | 40.0% |
| ! | TCTGTGTATTTTCCCATGCA+AGG | - | chr4.3:38278456-38278475 | MS.gene46932:intron | 40.0% |
| ! | TTTAAGGTGGAATTCACGGA+TGG | - | chr4.3:38279395-38279414 | MS.gene46932:intron | 40.0% |
| !!! | GCGGTGGTATTTTTTTGTAG+CGG | - | chr4.3:38277467-38277486 | MS.gene46932:CDS | 40.0% |
| ACACCAAGTAGCAAAGTGGT+TGG | - | chr4.3:38279830-38279849 | MS.gene46932:intron | 45.0% | |
| ATGAGTTGCGCATCAAGTAC+AGG | - | chr4.3:38278757-38278776 | MS.gene46932:CDS | 45.0% | |
| CAAGTACAGGACATATGTGG+TGG | - | chr4.3:38278770-38278789 | MS.gene46932:CDS | 45.0% | |
| CACCAAGTAGCAAAGTGGTT+GGG | - | chr4.3:38279831-38279850 | MS.gene46932:intron | 45.0% | |
| GGGAAAAGTGAAATACGTGG+AGG | + | chr4.3:38277784-38277803 | None:intergenic | 45.0% | |
| GTGGTTGGGAAAAGATTAGC+TGG | - | chr4.3:38279845-38279864 | MS.gene46932:intron | 45.0% | |
| TCATACCTACAGCCTTGCAT+GGG | + | chr4.3:38278471-38278490 | None:intergenic | 45.0% | |
| TTCCCAACCACTTTGCTACT+TGG | + | chr4.3:38279836-38279855 | None:intergenic | 45.0% | |
| ! | AAAAGATTAGCTGGCAGCGT+GGG | - | chr4.3:38279854-38279873 | MS.gene46932:intron | 45.0% |
| ! | ATGGTGGTGATTTCCTGCAA+TGG | - | chr4.3:38277508-38277527 | MS.gene46932:intron | 45.0% |
| ! | ATTTTCCCATGCAAGGCTGT+AGG | - | chr4.3:38278463-38278482 | MS.gene46932:intron | 45.0% |
| ! | TGCACGAAGAAGGTTTTCGA+AGG | - | chr4.3:38278152-38278171 | MS.gene46932:intron | 45.0% |
| !! | ACAAAGAAGGCGTTCCATAG+TGG | - | chr4.3:38279287-38279306 | MS.gene46932:intron | 45.0% |
| !! | ATAGATGGGCTACACATGCA+TGG | + | chr4.3:38278544-38278563 | None:intergenic | 45.0% |
| !! | GAAAGGCTTGCTGCAACTTT+AGG | - | chr4.3:38277434-38277453 | MS.gene46932:intron | 45.0% |
| !! | AAAAATCAAAATTATAATAA+TGG | + | chr4.3:38278678-38278697 | None:intergenic | 5.0% |
| AAACCTAGCGTTCATCAGCG+AGG | + | chr4.3:38277206-38277225 | None:intergenic | 50.0% | |
| ATGAGAGACCTGAGAACAGC+CGG | - | chr4.3:38277166-38277185 | MS.gene46932:CDS | 50.0% | |
| CCCTCTTGAACATGCTCCAA+CGG | + | chr4.3:38278296-38278315 | None:intergenic | 50.0% | |
| CCGTTGGAGCATGTTCAAGA+GGG | - | chr4.3:38278293-38278312 | MS.gene46932:intron | 50.0% | |
| CGAGGTTGCAAGTGTAGATC+CGG | + | chr4.3:38277188-38277207 | None:intergenic | 50.0% | |
| CGATGAATATCAGACGCGCT+AGG | - | chr4.3:38279138-38279157 | MS.gene46932:intron | 50.0% | |
| GCTGATGAACGCTAGGTTTG+AGG | - | chr4.3:38277207-38277226 | MS.gene46932:CDS | 50.0% | |
| GTCATACCTACAGCCTTGCA+TGG | + | chr4.3:38278472-38278491 | None:intergenic | 50.0% | |
| TCCGTTGGAGCATGTTCAAG+AGG | - | chr4.3:38278292-38278311 | MS.gene46932:intron | 50.0% | |
| TCTAACTCGGATACGGGGTT+CGG | + | chr4.3:38278726-38278745 | None:intergenic | 50.0% | |
| ! | GAAAAGATTAGCTGGCAGCG+TGG | - | chr4.3:38279853-38279872 | MS.gene46932:intron | 50.0% |
| !!! | CACGCTGATGGTTTTGATGG+TGG | - | chr4.3:38277492-38277511 | MS.gene46932:CDS | 50.0% |
| !!! | GCTCACGCTGATGGTTTTGA+TGG | - | chr4.3:38277489-38277508 | MS.gene46932:CDS | 50.0% |
| CAACCTCGCTGATGAACGCT+AGG | - | chr4.3:38277200-38277219 | MS.gene46932:CDS | 55.0% | |
| GATACGGGGTTCGGATCCAA+TGG | + | chr4.3:38278717-38278736 | None:intergenic | 55.0% | |
| GTGTAGATCCGGCTGTTCTC+AGG | + | chr4.3:38277177-38277196 | None:intergenic | 55.0% | |
| TTTGTAGCGGCTCACGCTGA+TGG | - | chr4.3:38277480-38277499 | MS.gene46932:CDS | 55.0% | |
| TGGCAGCGTGGGTTCGAACG+TGG | - | chr4.3:38279865-38279884 | MS.gene46932:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 38277160 | 38279961 | 38277160 | ID=MS.gene46932 |
| chr4.3 | mRNA | 38277160 | 38279961 | 38277160 | ID=MS.gene46932.t1;Parent=MS.gene46932 |
| chr4.3 | exon | 38279857 | 38279961 | 38279857 | ID=MS.gene46932.t1.exon1;Parent=MS.gene46932.t1 |
| chr4.3 | CDS | 38279857 | 38279961 | 38279857 | ID=cds.MS.gene46932.t1;Parent=MS.gene46932.t1 |
| chr4.3 | exon | 38279649 | 38279718 | 38279649 | ID=MS.gene46932.t1.exon2;Parent=MS.gene46932.t1 |
| chr4.3 | CDS | 38279649 | 38279718 | 38279649 | ID=cds.MS.gene46932.t1;Parent=MS.gene46932.t1 |
| chr4.3 | exon | 38278745 | 38278830 | 38278745 | ID=MS.gene46932.t1.exon3;Parent=MS.gene46932.t1 |
| chr4.3 | CDS | 38278745 | 38278830 | 38278745 | ID=cds.MS.gene46932.t1;Parent=MS.gene46932.t1 |
| chr4.3 | exon | 38278496 | 38278586 | 38278496 | ID=MS.gene46932.t1.exon4;Parent=MS.gene46932.t1 |
| chr4.3 | CDS | 38278496 | 38278586 | 38278496 | ID=cds.MS.gene46932.t1;Parent=MS.gene46932.t1 |
| chr4.3 | exon | 38278194 | 38278218 | 38278194 | ID=MS.gene46932.t1.exon5;Parent=MS.gene46932.t1 |
| chr4.3 | CDS | 38278194 | 38278218 | 38278194 | ID=cds.MS.gene46932.t1;Parent=MS.gene46932.t1 |
| chr4.3 | exon | 38278094 | 38278118 | 38278094 | ID=MS.gene46932.t1.exon6;Parent=MS.gene46932.t1 |
| chr4.3 | CDS | 38278094 | 38278118 | 38278094 | ID=cds.MS.gene46932.t1;Parent=MS.gene46932.t1 |
| chr4.3 | exon | 38277610 | 38277786 | 38277610 | ID=MS.gene46932.t1.exon7;Parent=MS.gene46932.t1 |
| chr4.3 | CDS | 38277610 | 38277786 | 38277610 | ID=cds.MS.gene46932.t1;Parent=MS.gene46932.t1 |
| chr4.3 | exon | 38277447 | 38277521 | 38277447 | ID=MS.gene46932.t1.exon8;Parent=MS.gene46932.t1 |
| chr4.3 | CDS | 38277447 | 38277521 | 38277447 | ID=cds.MS.gene46932.t1;Parent=MS.gene46932.t1 |
| chr4.3 | exon | 38277160 | 38277315 | 38277160 | ID=MS.gene46932.t1.exon9;Parent=MS.gene46932.t1 |
| chr4.3 | CDS | 38277160 | 38277315 | 38277160 | ID=cds.MS.gene46932.t1;Parent=MS.gene46932.t1 |
| Gene Sequence |
| Protein sequence |
