AlfalfaGEDB | MS.gene47004

M. sativa cultivar XinJiangDaYe / MS.gene47004

KEGG: -
GO: GO:0003674 GO:0003824 GO:0009055 GO:0016491
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47004.t1	XP_003617202.1	98.4	127	2	0	1	127	70	196	2.30E-66	261.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47004.t1	G7KCU0	98.4	127	2	0	1	127	70	196	1.7e-66	261.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051852	MS.gene47004	0.803553	3.30E-49	-1.69E-46

Showing 1 to 1 of 1 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 33 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAACTGCCACTGTTAC+TGG	0.264232	5.2:-75489049	None:intergenic
AAGACAAGGACACAATCCAA+TGG	0.682396	5.2:+75488993	MS.gene47004:CDS
ACGGATCAACTGATGACCAT+TGG	0.511597	5.2:-75489009	None:intergenic
AGCCGGAGACGGAGAATCTT+CGG	0.389032	5.2:-75489197	None:intergenic
AGTTCCTTTACTGAAAGAAG+GGG	0.634152	5.2:+75489063	MS.gene47004:CDS
ATAAATGTGACTCATGGACA+AGG	0.658209	5.2:+75489148	MS.gene47004:CDS
ATAATCACATTGTTTGTATG+TGG	0.560805	5.2:-75488960	None:intergenic
ATCCGAAGATTCTCCGTCTC+CGG	0.529783	5.2:+75489195	MS.gene47004:CDS
ATTGGATTGTGTCCTTGTCT+TGG	0.414041	5.2:-75488991	None:intergenic
CAGTTCCTTTACTGAAAGAA+GGG	0.524215	5.2:+75489062	MS.gene47004:CDS

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TATATGTTTGAACAAGAGAG+TGG	-	chr5.2:75488934-75488953	None:intergenic	30.0%
AGAATCCTATTGGATGATCA+AGG	+	chr5.2:75489684-75489703	MS.gene47004:intron	35.0%
AGTTCCTTTACTGAAAGAAG+GGG	+	chr5.2:75489063-75489082	MS.gene47004:CDS	35.0%
ATAAATGTGACTCATGGACA+AGG	+	chr5.2:75489148-75489167	MS.gene47004:CDS	35.0%
CAGTTCCTTTACTGAAAGAA+GGG	+	chr5.2:75489062-75489081	MS.gene47004:CDS	35.0%
CTTTAACATCGAAACAGAAC+TGG	-	chr5.2:75489344-75489363	None:intergenic	35.0%
GATGGTGAACAATGCAAAAA+TGG	+	chr5.2:75489112-75489131	MS.gene47004:CDS	35.0%
TACTGGATGTATATCAGTGT+TGG	-	chr5.2:75489035-75489054	None:intergenic	35.0%
TCATCCAATAGGATTCTCAA+AGG	-	chr5.2:75489681-75489700	None:intergenic	35.0%
TGATATACATCCAGTAACAG+TGG	+	chr5.2:75489039-75489058	MS.gene47004:CDS	35.0%

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	75488912	75489833	75488912	ID=MS.gene47004
chr5.2	mRNA	75488912	75489833	75488912	ID=MS.gene47004.t1;Parent=MS.gene47004
chr5.2	exon	75488912	75489362	75488912	ID=MS.gene47004.t1.exon1;Parent=MS.gene47004.t1
chr5.2	CDS	75488912	75489362	75488912	ID=cds.MS.gene47004.t1;Parent=MS.gene47004.t1
chr5.2	exon	75489830	75489833	75489830	ID=MS.gene47004.t1.exon2;Parent=MS.gene47004.t1
chr5.2	CDS	75489830	75489833	75489830	ID=cds.MS.gene47004.t1;Parent=MS.gene47004.t1

Gene Sequence

>MS.gene47004

TTTTCAACACAGACAATAACCACTCTCTTGTTCAAACATATAATTTCACCACATACAAACAATGTGATTATGATGATGCCCAAGACAAGGACACAATCCAATGGTCATCAGTTGATCCGTCCAACACTGATATACATCCAGTAACAGTGGCAGTTCCTTTACTGAAAGAAGGGGCAACATACTTTTTCTCTAGTGATTATGATGGTGAACAATGCAAAAATGGACAACATTTCAAAATAAATGTGACTCATGGACAAGGTTTGCCGAAGAGTCTTCAAAAGCCATCCGAAGATTCTCCGTCTCCGGCTAGTCCAATTTCCGGTGACGATGAGTCTGCGCCAGACACAAATATTCCTTCCAATTTCAACCATCCTAAGGAAGACAGTGACGATGAAAAAACTAGTGACAAAGATAAAGATAAAGAGGAATCCAGTTCTGTTTCGATGTTAAAGTATGCAAAATTTCACAACATGTTATATGGATGCCTTGTTTTATTAGGGACATTTTTCTTTTTTTAGTCTGTGTAAGATACCTTTTATTTATTTTATAATAATTTATTATAGATTTTATTATCTTCTCAATTTAATTTTGTTGACGTGAGATGTGAGCTAGGGTATACCATCTATGTTATTGTTGTATAAAACTTCACATTATATTTATTGTGTAAATTTCAATTAATATATTGAGAAAGAACAAGAGTTCAAGAAATAGTCCCGTTGTTTTTTTTTTTTGAAAGACAACAGTCCTGTATTTGATTTGTTCAATTCCTTTGAGAATCCTATTGGATGATCAAGGATCGTGTTTATTTATAGTTGTATCAAAATTTTGTTTTAATATTTGCAACGAAATTGCTTGTGCTACAAGATATATGGTTTTTTTTGAATTATGAATACGTAGATATGGTGATTGATATCTCAGATGA

Protein sequence

>MS.gene47004.t1

FSTQTITTLLFKHIISPHTNNVIMMMPKTRTQSNGHQLIRPTLIYIQUQWQFLYUKKGQHTFSLVIMMVNNAKMDNISKUMULMDKVCRRVFKSHPKILRLRLVQFPVTMSLRQTQIFLPISTILRKTVTMKKLVTKIKIKRNPVLFRCUN