AlfalfaGEDB | MS.gene47131

M. sativa cultivar XinJiangDaYe / MS.gene47131

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47131.t1	XP_024642415.1	57.8	533	10	1	69	386	238	770	7.00E-107	397.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47131.t1	Q8LFN2	43.3	180	96	4	203	376	576	755	2.6e-33	144.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47131.t1	A0A396HI69	57.8	533	10	1	69	386	238	770	5.1e-107	397.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051719	MS.gene47131	0.809411	1.92E-50	-1.69E-46
MS.gene051720	MS.gene47131	0.802994	4.31E-49	-1.69E-46
MS.gene053144	MS.gene47131	0.811946	5.43E-51	-1.69E-46
MS.gene060519	MS.gene47131	0.808569	2.90E-50	-1.69E-46

Showing 1 to 4 of 4 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47131.t1	MTR_6g023390	97.462	197	5	0	1	197	170	366	1.86e-127	385
MS.gene47131.t1	MTR_6g023390	91.005	189	16	1	198	386	582	769	6.28e-116	355
MS.gene47131.t1	MTR_7g031470	75.127	197	49	0	1	197	165	361	3.37e-91	290
MS.gene47131.t1	MTR_7g031470	64.574	223	70	4	163	382	548	764	1.06e-90	289
MS.gene47131.t1	MTR_3g088930	52.551	196	91	2	181	376	559	752	7.58e-58	201
MS.gene47131.t1	MTR_3g088930	52.821	195	92	0	1	195	164	358	4.28e-57	199
MS.gene47131.t1	MTR_6g027720	41.237	194	114	0	4	197	157	350	1.29e-38	147
MS.gene47131.t1	MTR_6g027720	35.000	200	103	3	203	385	579	768	6.39e-31	125
MS.gene47131.t1	MTR_8g044230	43.814	194	107	1	4	197	157	348	4.40e-37	143
MS.gene47131.t1	MTR_8g044230	38.830	188	108	3	196	376	630	817	2.71e-33	132

Showing 1 to 10 of 1,585 entries

Previous1 2 3 4 5…159Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47131.t1	AT5G14210	71.739	184	51	1	203	386	590	772	2.79e-82	267
MS.gene47131.t1	AT5G14210	60.204	196	78	0	1	196	164	359	1.93e-69	233
MS.gene47131.t1	AT5G14210	71.739	184	51	1	203	386	621	803	3.91e-82	267
MS.gene47131.t1	AT5G14210	60.204	196	78	0	1	196	164	359	3.11e-69	233
MS.gene47131.t1	AT5G14210	60.204	196	78	0	1	196	164	359	3.76e-69	232
MS.gene47131.t1	AT5G14210	68.696	115	35	1	203	317	590	703	2.13e-42	158
MS.gene47131.t1	AT5G63410	46.522	230	98	4	162	383	467	679	6.08e-60	206
MS.gene47131.t1	AT5G63410	36.932	176	102	4	22	191	90	262	3.92e-16	80.5
MS.gene47131.t1	AT3G03770	43.333	180	96	4	203	376	576	755	1.14e-39	150
MS.gene47131.t1	AT3G03770	45.026	191	104	1	1	190	152	342	1.14e-33	133

Showing 1 to 10 of 1,208 entries

Previous1 2 3 4 5…121Next

Find 54 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGTGACCACAAATTT+CGG	0.364035	6.3:-16668537	None:intergenic
AAACCATAGTCACTTAGTTT+TGG	0.293940	6.3:-16669420	None:intergenic
AAAGAGAACAATGCCAACGG+CGG	0.709449	6.3:-16668660	None:intergenic
AACAAAGAATCAAACCAATT+AGG	0.442771	6.3:-16668315	None:intergenic
AATGGTAGAGTTGTTCGATA+TGG	0.385048	6.3:+16668831	MS.gene47131:CDS
ACCACAAATTTCGGAAGAAC+CGG	0.460375	6.3:-16668528	None:intergenic
ACCGGTTCTTCCGAAATTTG+TGG	0.454533	6.3:+16668527	MS.gene47131:CDS
AGAGGATATCGAAAAGTTTG+AGG	0.524229	6.3:+16669455	MS.gene47131:CDS
AGAGTCTTGAGCTATACATT+TGG	0.475732	6.3:-16671316	None:intergenic
AGATATTCTTTGTCTTTAGT+TGG	0.409867	6.3:-16669377	None:intergenic

Showing 1 to 10 of 54 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACACACTTTCATAGTGAAA+CGG	+	chr6.3:16671076-16671095	MS.gene47131:intron	30.0%
AATCAATACATGGACAAAGA+CGG	-	chr6.3:16670015-16670034	None:intergenic	30.0%
ACAACAAAAACCAGAGAAAA+CGG	-	chr6.3:16669182-16669201	None:intergenic	30.0%
ACTGTATCTTTGTGCATTTA+AGG	+	chr6.3:16669949-16669968	MS.gene47131:intron	30.0%
ACTTCAAACCTCTTAGTAAA+GGG	-	chr6.3:16670715-16670734	None:intergenic	30.0%
AGTATCATCCATACACAAAA+TGG	+	chr6.3:16670559-16670578	MS.gene47131:intron	30.0%
ATAAAGGTGAATTGGATGAT+CGG	-	chr6.3:16670204-16670223	None:intergenic	30.0%
ATATTGTTGGAATCACTTGT+TGG	+	chr6.3:16670839-16670858	MS.gene47131:CDS	30.0%
ATTCCAAAACTAAGTGACTA+TGG	+	chr6.3:16669417-16669436	MS.gene47131:CDS	30.0%
CATAGAACATCTTCAAAAGA+AGG	-	chr6.3:16671351-16671370	None:intergenic	30.0%

Showing 1 to 10 of 162 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	16668261	16671431	16668261	ID=MS.gene47131
chr6.3	mRNA	16668261	16671431	16668261	ID=MS.gene47131.t1;Parent=MS.gene47131
chr6.3	exon	16668261	16668852	16668261	ID=MS.gene47131.t1.exon1;Parent=MS.gene47131.t1
chr6.3	CDS	16668261	16668852	16668261	ID=cds.MS.gene47131.t1;Parent=MS.gene47131.t1
chr6.3	exon	16669265	16669476	16669265	ID=MS.gene47131.t1.exon2;Parent=MS.gene47131.t1
chr6.3	CDS	16669265	16669476	16669265	ID=cds.MS.gene47131.t1;Parent=MS.gene47131.t1
chr6.3	exon	16669568	16669596	16669568	ID=MS.gene47131.t1.exon3;Parent=MS.gene47131.t1
chr6.3	CDS	16669568	16669596	16669568	ID=cds.MS.gene47131.t1;Parent=MS.gene47131.t1
chr6.3	exon	16670796	16670907	16670796	ID=MS.gene47131.t1.exon4;Parent=MS.gene47131.t1
chr6.3	CDS	16670796	16670907	16670796	ID=cds.MS.gene47131.t1;Parent=MS.gene47131.t1
chr6.3	exon	16671216	16671431	16671216	ID=MS.gene47131.t1.exon5;Parent=MS.gene47131.t1
chr6.3	CDS	16671216	16671431	16671216	ID=cds.MS.gene47131.t1;Parent=MS.gene47131.t1

Gene Sequence

>MS.gene47131

ATGGTAAAGCTTCAATCACTAACACTTGATGAGAATTATTTCAATACCACTATGCCTAATTGGTTTGATTCTTTGTTTAACTTAAGTATCTTGAGTTTGAAGAAAAATCACTTAAAGGGTTCATTTCCAATTTCACTATGCAAAATCAAGACACTTAAAGTTATTTCCTTGTCACAAAATGAACTCTCTGGTGAATTGCCTAGTCTCACTACTCTCAATGGTTTACATGTTTTGGATTTGAGAGAAAATCGTTTCGAATTTGAACTACCGGTTCTTCCGAAATTTGTGGTCACCGTTTTGTTAAGCAATAACTCGTTCTCCGGAGAGATACCGAAGAAGTTCGGCGAATTGAATCATCTTCAACATTTAGATCTTTCGTCGAATCATCTGAAGGGCACGCCGCCGTTGGCATTGTTCTCTTTGTCAAATTTAAGTTATCTGAATCTTGCAAACAATGTGCTAAGTGGAGAATTTTCTGATAAACTTCATTGTGGTGGAAAACTCGGTTATGTTGATATTTCTAGCAACAAGTTAAGTGGTTTACTTCCTTCTTGTTTGGCGAATAGTTCTAATGGTAGAGTTGTTCGATATGGTAGAGTTTGGCATTAGCATTATAGTATGCATAATATTGAGTGCATAACATTTATTTTGAGTTAACATTGATTTGTTCTCTAAATGTGCGAGTCGATGTCACTATAATCTCTGAATGTATCAAAATTACTAAAATATCCTTGTGTGTATCTTCTTTAGTAATCTGATAAATGAAACTGACTAAACGAAGACACGTTCGATGACCAAACTAACTAAAGAAAAATACATTTGAGGACCAAACTAACTAACAAGGGACAAATTCGAAAAATCTTTGTAATTTTGGTACTCTATAGCCGTAGCACCGGACACTTTCACAAACCAAAATGACCGTTTTCTCTGGTTTTTGTTGTACAACATAGCTTTGTTATTAAAGGCTTCAATTTTCTAATCTTGCTTCATTAAAAAAATTGCAGAATATTCTGCAGTGAAAGCACTTAAGTGGCCTGATAGACTAGCAATTTTGATTGGAGTTGCAAAGGCAGTGCATTTCTTACATACTGGTGTTATACCAGGATGTTTTAGCAACCAACTAAAGACAAAGAATATCTTACTTGATGAACACTGCATTCCAAAACTAAGTGACTATGGTTTGTCCATCATCAAAGAGGATATCGAAAAGTTTGAGGTATGTTTAATTAATCCAATGTAGCTGTTTTATCATGATCTAATATGGTTTTGATCATTTAGTGACTATTTCTTTCTATGTTTACGTACAGACAAAGAGCGAGAAGAAATCAAAATCATGGTATGTACTATAACTTAAATTTCTATGTTTGACTCGATAAGCAACTTTTTTTTTTCTTCAACTAAATGATGAATTATATCACAAAACAAAAATAATCTGAAGTATCAGCAACTATAAACATATCCATAAACCAAAACCATGTTATTTGTCTCGAACGAAACAAAAGGTGAAAGGAACTCCCTTCCATTCCACCATCATATCAATGTGCACAAAAGCAGTTTCAACTTCTGGAAGTTGTTCTAGATTCTCTTGAAGTGTTTCACCAATGTTGTTTGCTTGGTTTAGAAGCATGACTTCTGGCCAAACAATGTCAACTTCCACAAAGTAATGTGTACCAAAAGTGTATGCTCTAACTGTATCTTTGTGCATTTAAGGTAACTTAACTTTGCAAACAGTGACCAAACATTCTTAATCACCGTCTTTGTCCATGTATTGATTGTATACAATGCAATAACAATAGCTCCTGTTGGATCAATCCACTATTGGAACTTTACAGCTAGAACAGCAGCAGCTGAACCGACGGAATTAGTAAAGACATCAAAAAGATGATCTTCGACAGTTGACCATAAGAATGAACTTCACTACAGTCACGAATACCATAATCCCGATCATCCAATTCACCTTTATAGATCCACTTCTGGCTTAGCCTTTGCAATAATTTGCCGACCAGACTCAATCAAAATCGGCAAGCCCAAGGTTGTCATTAGTGATGCAAAAACAATGATACCCTCTGGTTGCATGCGTTTCTTTGCAATCGGATAGTGATGTCGGTTTGGCTTAAGATAAACACCTTTTAGAAAACAAAAATTGGCCATAAATTGTCCAAAAATCGGATTAGTAATGTTGGTTTACTAGATATGTTTTTTTTTTCCTTTCAAATGTACCCCCTTATTAATACTACTAAATCGTTTTGAAAGATGAAAAGTCAACGTTATCCACATCTATGCACAAAAGGGTGTTTTAGTATCATCCATACACAAAATGGTCACATTAAATATATGTGAAAAGAAGCTTATAACATGGACACAACCATTGCTTTGTTTTCAATCCTATGACAATTTGTATTTACTTTTTTCAGATTTAGTATTTGTTTCCTAGAATCTACTTCAATTTTACCCTTTACTAAGAGGTTTGAAGTCCTTTTTTATGCTTCAATGAATTTGTGTATCCTTAACAAATTAATTATTTTAATCTTGTAGTCCAAAGACAAAGATGGATAATGATGTTTACAATTTTGGATTCATATTGTTGGAATCACTTGTTGGACCCATTACACGTGACAAAGGTGAAACATTTTTCATTAATGAAAAGGTTAGTAAAAACTTGCAGAATAATATACTTACTATATGAAATTTGATGATGATTTTTCAGTGTCAATTTTTTCTTCATTCTTATTCATTTTGATTGTTCTTATTATATTTTTATTATTTTTTATTTAATTTAAAATATTTTTTTTGACACCGTAGAAGAACGGTTCTTAACACACTTTCATAGTGAAACGGGAAAGAACCGTTCTTATCTCTAAGAGTTCATTTACGAACTCGACTATAGATACGTTGTTATGATTAAATTTAATTTTTTTCTTAAGTAATGACTTGAAAACATGTTGTGAACCATAGGCATCATTTGGAAGTCAAGATGGAAGAAGAAAGATTGTGGATCCAATAGTGTTAACAACTTGCTCTCAAGAATCATTATCAATTGCAATATCTATAACAACCAAATGTATAGCTCAAGACTCTTCAACTCGTCCTTCTTTTGAAGATGTTCTATGGAACTTACAATATGCAGCTCAAGTTCAAGCCACAGCAGATGCAGATCAAAAATCAGATTAA

Protein sequence

>MS.gene47131.t1

MVKLQSLTLDENYFNTTMPNWFDSLFNLSILSLKKNHLKGSFPISLCKIKTLKVISLSQNELSGELPSLTTLNGLHVLDLRENRFEFELPVLPKFVVTVLLSNNSFSGEIPKKFGELNHLQHLDLSSNHLKGTPPLALFSLSNLSYLNLANNVLSGEFSDKLHCGGKLGYVDISSNKLSGLLPSCLANSSNGRVVRYEYSAVKALKWPDRLAILIGVAKAVHFLHTGVIPGCFSNQLKTKNILLDEHCIPKLSDYGLSIIKEDIEKFETKSEKKSKSCPKTKMDNDVYNFGFILLESLVGPITRDKGETFFINEKASFGSQDGRRKIVDPIVLTTCSQESLSIAISITTKCIAQDSSTRPSFEDVLWNLQYAAQVQATADADQKSD