AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47145

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47145.t1 MTR_6g023910 88.519 270 31 0 1 270 1 270 6.13e-178 491
MS.gene47145.t1 MTR_6g023610 83.271 269 45 0 1 269 1 269 8.12e-164 455
MS.gene47145.t1 MTR_6g023590 71.321 265 76 0 1 265 1 265 1.51e-139 393
MS.gene47145.t1 MTR_6g023990 71.429 266 75 1 1 265 1 266 1.25e-136 386
MS.gene47145.t1 MTR_6g023600 72.453 265 73 0 1 265 1 265 9.23e-136 384
MS.gene47145.t1 MTR_6g023950 72.031 261 73 0 1 261 1 261 2.50e-129 367
MS.gene47145.t1 MTR_6g023600 70.566 265 72 1 1 265 1 259 1.06e-128 365
MS.gene47145.t1 MTR_2g090165 49.600 250 124 2 12 261 5 252 3.97e-77 235
MS.gene47145.t1 MTR_7g110130 48.000 250 129 1 12 261 5 253 1.49e-76 233
MS.gene47145.t1 MTR_7g110140 46.429 252 133 2 10 261 3 252 7.79e-72 221
MS.gene47145.t1 MTR_6g023940 57.009 214 30 2 1 214 1 152 1.67e-69 211
MS.gene47145.t1 MTR_7g110160 46.000 250 115 2 12 261 5 234 1.64e-67 210
MS.gene47145.t1 MTR_7g105460 42.366 262 147 3 1 261 1 259 2.29e-67 210
MS.gene47145.t1 MTR_4g052300 44.706 255 130 4 8 259 3 249 6.16e-66 206
MS.gene47145.t1 MTR_4g052340 44.048 252 130 4 12 260 13 256 3.43e-64 202
MS.gene47145.t1 MTR_4g052320 43.307 254 140 3 8 261 3 252 3.68e-63 199
MS.gene47145.t1 MTR_6g035395 45.600 250 121 3 12 261 4 238 1.07e-62 197
MS.gene47145.t1 MTR_7g071680 42.599 277 131 8 12 266 28 298 4.24e-62 197
MS.gene47145.t1 MTR_4g052350 43.411 258 135 4 12 266 13 262 4.34e-62 197
MS.gene47145.t1 MTR_4g078630 42.481 266 142 3 12 270 18 279 6.57e-61 194
MS.gene47145.t1 MTR_7g083870 38.314 261 152 5 12 266 34 291 2.35e-55 180
MS.gene47145.t1 MTR_7g107670 36.604 265 160 4 7 266 27 288 3.12e-52 172
MS.gene47145.t1 MTR_7g105590 42.857 189 106 2 12 200 7 193 3.98e-48 158
MS.gene47145.t1 MTR_4g084800 51.429 140 67 1 1 140 1 139 5.34e-45 149
MS.gene47145.t1 MTR_3g020670 37.354 257 152 4 12 261 15 269 1.08e-44 152
MS.gene47145.t1 MTR_7g105580 36.400 250 139 3 12 261 7 236 3.01e-43 148
MS.gene47145.t1 MTR_3g113870 41.081 185 102 4 21 203 29 208 1.02e-41 143
MS.gene47145.t1 MTR_7g105570 39.444 180 108 1 82 261 38 216 3.72e-36 129
MS.gene47145.t1 MTR_1g082760 31.939 263 156 8 12 262 39 290 8.77e-27 105
MS.gene47145.t1 MTR_4g132850 30.588 255 164 6 12 263 6 250 1.36e-25 102
MS.gene47145.t1 MTR_7g113650 30.712 267 154 9 12 262 39 290 1.62e-25 102
MS.gene47145.t1 MTR_7g094510 29.730 259 170 5 10 262 3 255 3.09e-25 100
MS.gene47145.t1 MTR_3g085740 29.630 270 168 9 1 262 64 319 2.03e-24 100
MS.gene47145.t1 MTR_4g064887 31.698 265 167 10 1 259 1 257 7.62e-22 92.0
MS.gene47145.t1 MTR_7g094520 30.588 255 167 6 13 262 11 260 8.98e-22 91.7
MS.gene47145.t1 MTR_4g131740 27.715 267 165 7 8 259 35 288 8.45e-20 87.0
MS.gene47145.t1 MTR_7g063260 27.652 264 183 6 4 263 7 266 1.02e-18 83.6
MS.gene47145.t1 MTR_4g064887 32.212 208 132 6 1 203 1 204 1.63e-18 82.0
MS.gene47145.t1 MTR_7g063270 27.170 265 182 7 4 263 7 265 4.11e-18 82.0
MS.gene47145.t1 MTR_4g058810 28.346 254 157 8 13 252 11 253 9.51e-18 80.9
MS.gene47145.t1 MTR_1196s0010 30.435 253 155 8 16 262 277 514 2.41e-17 81.6
MS.gene47145.t1 MTR_4g058840 28.016 257 154 9 13 252 11 253 2.67e-17 79.7
MS.gene47145.t1 MTR_4g058820 28.016 257 154 9 13 252 11 253 2.67e-17 79.7
MS.gene47145.t1 MTR_1g051165 25.581 258 178 6 12 258 13 267 2.04e-16 77.4
MS.gene47145.t1 MTR_1g068955 28.185 259 167 7 11 259 12 261 1.02e-15 75.5
MS.gene47145.t1 MTR_7g063320 28.897 263 175 7 6 262 8 264 1.25e-15 75.1
MS.gene47145.t1 MTR_7g105560 58.209 67 27 1 1 67 1 66 1.28e-15 72.8
MS.gene47145.t1 MTR_3g068085 29.572 257 161 11 13 261 15 259 3.01e-15 73.9
MS.gene47145.t1 MTR_7g063360 28.102 274 174 9 1 261 1 264 4.77e-15 73.6
MS.gene47145.t1 MTR_3g068155 29.762 252 163 8 13 259 19 261 6.59e-15 73.2
MS.gene47145.t1 MTR_7g063330 26.415 265 182 8 5 263 7 264 1.18e-14 72.4
MS.gene47145.t1 MTR_3g068175 27.600 250 171 6 13 259 17 259 8.50e-14 70.1
MS.gene47145.t1 MTR_4g086400 28.436 211 127 6 14 207 5 208 8.92e-14 71.2
MS.gene47145.t1 MTR_3g068175 27.165 254 171 7 13 259 17 263 1.11e-13 69.7
MS.gene47145.t1 MTR_4g086410 29.384 211 125 6 14 207 5 208 1.36e-13 70.9
MS.gene47145.t1 MTR_7g063390 26.545 275 177 9 1 261 1 264 1.69e-13 68.9
MS.gene47145.t1 MTR_8g096620 26.818 220 145 7 4 216 39 249 1.97e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47145.t1 AT2G47140 49.200 250 125 2 12 261 5 252 1.14e-77 236
MS.gene47145.t1 AT2G47130 46.693 257 126 5 9 261 2 251 8.00e-70 216
MS.gene47145.t1 AT3G29250 44.706 255 139 2 7 261 36 288 4.19e-68 213
MS.gene47145.t1 AT3G29250 44.664 253 138 2 9 261 2 252 4.29e-68 212
MS.gene47145.t1 AT2G47120 45.059 253 135 4 9 261 2 250 6.09e-68 211
MS.gene47145.t1 AT3G29260 46.400 250 131 3 12 261 5 251 9.59e-68 211
MS.gene47145.t1 AT2G47120 45.200 250 133 4 12 261 6 251 2.81e-67 209
MS.gene47145.t1 AT3G29250 44.358 257 139 3 7 261 36 290 3.89e-66 208
MS.gene47145.t1 AT3G51680 40.493 284 147 5 1 266 20 299 9.91e-60 192
MS.gene47145.t1 AT3G26760 38.290 269 155 6 6 266 29 294 5.86e-55 179
MS.gene47145.t1 AT3G26770 37.308 260 154 5 12 265 40 296 2.59e-53 175
MS.gene47145.t1 AT4G03140 36.923 260 156 4 12 266 77 333 7.52e-50 167
MS.gene47145.t1 AT1G52340 39.464 261 144 6 12 261 17 274 1.94e-47 159
MS.gene47145.t1 AT3G42960 39.051 274 153 6 6 270 1 269 3.76e-47 158
MS.gene47145.t1 AT1G54870 32.338 201 122 4 12 203 81 276 1.45e-25 103
MS.gene47145.t1 AT1G54870 32.338 201 122 4 12 203 83 278 1.52e-25 103
MS.gene47145.t1 AT3G05260 28.571 273 171 8 4 262 24 286 9.20e-25 100
MS.gene47145.t1 AT3G03980 29.670 273 171 6 4 262 5 270 2.94e-24 98.6
MS.gene47145.t1 AT5G18210 28.897 263 164 6 13 262 8 260 4.96e-23 95.1
MS.gene47145.t1 AT4G13180 28.409 264 173 8 7 262 7 262 9.61e-21 89.0
MS.gene47145.t1 AT5G18210 30.081 246 149 6 13 245 8 243 1.06e-20 89.4
MS.gene47145.t1 AT1G24360 26.423 246 166 6 19 259 80 315 2.80e-20 89.0
MS.gene47145.t1 AT4G05530 29.885 261 158 7 12 263 8 252 3.66e-20 87.4
MS.gene47145.t1 AT3G04000 27.941 272 176 5 2 259 3 268 5.02e-20 87.4
MS.gene47145.t1 AT2G29340 30.233 258 164 8 8 259 2 249 6.82e-20 86.7
MS.gene47145.t1 AT2G29340 30.233 258 164 8 8 259 2 249 9.52e-20 87.0
MS.gene47145.t1 AT2G29150 30.741 270 156 10 3 259 6 257 2.22e-19 85.5
MS.gene47145.t1 AT5G06060 28.413 271 158 9 7 261 3 253 6.16e-18 81.6
MS.gene47145.t1 AT2G29310 29.615 260 167 10 8 261 2 251 1.13e-17 80.9
MS.gene47145.t1 AT1G63380 27.481 262 162 9 13 258 19 268 3.42e-17 79.7
MS.gene47145.t1 AT2G29340 30.693 202 129 6 8 204 2 197 3.51e-17 78.2
MS.gene47145.t1 AT2G29340 30.693 202 129 6 8 204 2 197 3.51e-17 78.2
MS.gene47145.t1 AT1G63380 27.481 262 162 9 13 258 15 264 4.01e-17 79.3
MS.gene47145.t1 AT1G63380 27.481 262 162 9 13 258 22 271 4.25e-17 79.7
MS.gene47145.t1 AT1G63380 27.481 262 162 9 13 258 17 266 4.46e-17 79.3
MS.gene47145.t1 AT2G29330 28.906 256 170 8 8 259 2 249 4.99e-17 79.0
MS.gene47145.t1 AT2G30670 26.562 256 176 6 8 259 2 249 1.79e-16 77.4
MS.gene47145.t1 AT1G62610 26.275 255 162 8 13 252 13 256 5.81e-16 76.3
MS.gene47145.t1 AT1G62610 26.275 255 162 8 13 252 14 257 6.00e-16 76.3
MS.gene47145.t1 AT1G62610 26.275 255 162 8 13 252 15 258 6.38e-16 76.3
MS.gene47145.t1 AT1G62610 26.437 261 166 8 13 258 19 268 7.45e-16 75.9
MS.gene47145.t1 AT2G29350 28.517 263 161 10 8 259 10 256 8.32e-16 75.5
MS.gene47145.t1 AT2G29360 28.077 260 161 7 13 261 16 260 1.43e-15 75.1
MS.gene47145.t1 AT3G46170 25.385 260 171 7 12 258 25 274 1.65e-15 75.1
MS.gene47145.t1 AT3G55290 25.869 259 171 7 12 258 17 266 2.16e-15 74.7
MS.gene47145.t1 AT3G55290 28.000 200 135 4 12 204 16 213 2.50e-15 74.3
MS.gene47145.t1 AT2G29300 29.811 265 157 12 8 259 2 250 4.59e-15 73.6
MS.gene47145.t1 AT1G07440 28.516 256 170 7 8 259 7 253 4.62e-15 73.6
MS.gene47145.t1 AT2G29300 29.811 265 157 12 8 259 2 250 7.34e-15 73.2
MS.gene47145.t1 AT2G29320 29.845 258 156 10 13 259 13 256 7.69e-15 72.8
MS.gene47145.t1 AT3G55310 28.846 208 129 6 12 207 16 216 9.23e-15 72.8
MS.gene47145.t1 AT2G29370 27.132 258 166 8 13 261 16 260 2.50e-14 71.6
MS.gene47145.t1 AT1G49670 28.502 207 124 6 14 203 5 204 1.70e-12 67.4
MS.gene47145.t1 AT1G49670 28.713 202 130 5 14 203 5 204 1.89e-12 67.4

Find 66 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCGAAGCACACAATAAT+AGG 0.203487 6.3:-16860240 MS.gene47145:CDS
CATTCACTAACAACAATCTT+AGG 0.241211 6.3:-16861005 MS.gene47145:CDS
GTGGATGGTAGCTATGTTTC+TGG 0.306811 6.3:-16859973 MS.gene47145:CDS
GGCAGATGTTGTGTTGTTCT+TGG 0.310168 6.3:-16860037 MS.gene47145:CDS
GATATTATGTTTAGTAATGC+TGG 0.328463 6.3:-16860465 MS.gene47145:CDS
CAATCGACGGTCAATACTTA+TGG 0.349892 6.3:-16860772 MS.gene47145:CDS
GTGCTTCGACATTATGTAAT+CGG 0.363259 6.3:+16860251 None:intergenic
GCCAATGCCGCTGGCACCTC+CGG 0.364087 6.3:+16860957 None:intergenic
ACTGTCTTTGCACCTGCATC+TGG 0.367733 6.3:+16860120 None:intergenic
TACCATGCGTGCACCTTGTT+CGG 0.374809 6.3:+16860912 None:intergenic
CGTCTCTTTGCCAATGCCGC+TGG 0.405832 6.3:+16860948 None:intergenic
ACCGGAGGTGCCAGCGGCAT+TGG 0.425693 6.3:-16860958 MS.gene47145:CDS
CTTGATTGCCCAACTCGACT+TGG 0.440529 6.3:+16860875 None:intergenic
AACTTGCAAAGCATGGGATA+AGG 0.445636 6.3:-16860194 MS.gene47145:CDS
AACAACAATCTTAGGTTAGC+AGG 0.450218 6.3:-16860997 MS.gene47145:CDS
TTGTTCTCAGTTAACATTCG+AGG 0.461567 6.3:-16860384 MS.gene47145:CDS
CGCTGACATCCAAGTCGAGT+TGG 0.467554 6.3:-16860884 MS.gene47145:CDS
TGTCGAAGCACACAATAATA+GGG 0.467991 6.3:-16860239 MS.gene47145:CDS
GTGTGCACGGCTAGCGTCGC+CGG 0.471191 6.3:-16860297 MS.gene47145:CDS
CAATGGTGGACGGGTGCGTG+AGG 0.474303 6.3:-16860329 MS.gene47145:CDS
GAATGTTAACTGAGAACAAA+TGG 0.474911 6.3:+16860388 None:intergenic
GTGAATTGTGTATCACCAAA+TGG 0.474979 6.3:-16860171 MS.gene47145:CDS
GGAGAATACAAGAGGTTGGA+AGG 0.477377 6.3:-16860084 MS.gene47145:CDS
GGCAAAACAGCCATCGTCAC+CGG 0.479207 6.3:-16860976 MS.gene47145:CDS
CTCAGTTAACATTCGAGGAA+TGG 0.485569 6.3:-16860379 MS.gene47145:CDS
AATGAATGTAGGTGCACCTA+TGG 0.488237 6.3:+16860833 None:intergenic
TCCAACACAGTTTGATCAGA+TGG 0.488434 6.3:+16860432 None:intergenic
ACTTGCAAAGCATGGGATAA+GGG 0.492055 6.3:-16860193 MS.gene47145:CDS
AATGGTGTTGCTAATCCATT+TGG 0.497446 6.3:+16860156 None:intergenic
ATGGTGGACGGGTGCGTGAG+GGG 0.498110 6.3:-16860327 MS.gene47145:CDS
GGCCTTGATCTTCGTGTGGA+TGG 0.499300 6.3:-16859988 MS.gene47145:CDS
AATGGTGGACGGGTGCGTGA+GGG 0.501756 6.3:-16860328 MS.gene47145:CDS
GCTGACATCCAAGTCGAGTT+GGG 0.504241 6.3:-16860883 MS.gene47145:CDS
AATAATAGGGTTGATGCGTT+CGG 0.506821 6.3:-16860226 MS.gene47145:CDS
ATATTATGTTTAGTAATGCT+GGG 0.508057 6.3:-16860464 MS.gene47145:CDS
GAGGGGTAGCATTGTGTGCA+CGG 0.524508 6.3:-16860310 MS.gene47145:CDS
CTGCATCCATTGACGGCCAT+AGG 0.530361 6.3:-16860849 MS.gene47145:CDS
CAAGTGGCTGCATCCATTGA+CGG 0.531905 6.3:-16860856 MS.gene47145:CDS
CGGCACGTGCAATGGTGGAC+GGG 0.533157 6.3:-16860338 MS.gene47145:CDS
AATGAATCTGACTTTGTCAC+TGG 0.533236 6.3:-16860009 MS.gene47145:CDS
AGTGTGCAACTTGCAAAGCA+TGG 0.534452 6.3:-16860201 MS.gene47145:CDS
GTGCATGTCTTTGCCGAACA+AGG 0.540817 6.3:-16860925 MS.gene47145:CDS
CTTCACGCCACCATGGCTAC+CGG 0.543196 6.3:+16860278 None:intergenic
GGTGCACCTATGGCCGTCAA+TGG 0.549417 6.3:+16860843 None:intergenic
TCCATCTGATCAAACTGTGT+TGG 0.550969 6.3:-16860433 MS.gene47145:CDS
GCTGGCACCTCCGGTGACGA+TGG 0.551983 6.3:+16860966 None:intergenic
CAGCGGCATTGGCAAAGAGA+CGG 0.557214 6.3:-16860947 MS.gene47145:CDS
GCTAGCGTCGCCGGTAGCCA+TGG 0.557609 6.3:-16860288 MS.gene47145:CDS
TACCATCCACACGAAGATCA+AGG 0.559297 6.3:+16859986 None:intergenic
ACATGTAAATTGCCAGATGC+AGG 0.559452 6.3:-16860132 MS.gene47145:CDS
CACTGGCCTTGATCTTCGTG+TGG 0.560496 6.3:-16859992 MS.gene47145:CDS
GCGGCACGTGCAATGGTGGA+CGG 0.561685 6.3:-16860339 MS.gene47145:CDS
ATACAAGAGGTTGGAAGGAG+TGG 0.561860 6.3:-16860079 MS.gene47145:CDS
TGCCGAACAAGGTGCACGCA+TGG 0.572240 6.3:-16860914 MS.gene47145:CDS
ACATGCGGCACGTGCAATGG+TGG 0.572277 6.3:-16860343 MS.gene47145:CDS
GTGTGCAACTTGCAAAGCAT+GGG 0.574953 6.3:-16860200 MS.gene47145:CDS
GAAACATGCGGCACGTGCAA+TGG 0.575721 6.3:-16860346 MS.gene47145:CDS
ATCGTCACCGGAGGTGCCAG+CGG 0.590387 6.3:-16860964 MS.gene47145:CDS
TCTGGCAATTTACATGTCAA+TGG 0.594870 6.3:+16860138 None:intergenic
TGCTACGTCACAATGAATGT+AGG 0.604954 6.3:+16860822 None:intergenic
AGTCGAGTTGGGCAATCAAG+TGG 0.612217 6.3:-16860872 MS.gene47145:CDS
AGCGTCGCCGGTAGCCATGG+TGG 0.632739 6.3:-16860285 MS.gene47145:CDS
CGGTTAACTTCACGCCACCA+TGG 0.654241 6.3:+16860271 None:intergenic
AAAACAGCCATCGTCACCGG+AGG 0.659068 6.3:-16860973 MS.gene47145:CDS
GGCATTGTGCGTGAAACATG+CGG 0.685563 6.3:-16860358 MS.gene47145:CDS
GGTTCTCAACACTAAACATG+TGG 0.686817 6.3:-16860058 MS.gene47145:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATGTTTAGTAATGCT+GGG - chr6.3:16860505-16860524 MS.gene47145:intron 20.0%
! CACAAATGATTCATGATATT+AGG - chr6.3:16860337-16860356 MS.gene47145:CDS 25.0%
! GATATTATGTTTAGTAATGC+TGG - chr6.3:16860504-16860523 MS.gene47145:intron 25.0%
!!! AAGACAGTTGATTTGATTTT+TGG - chr6.3:16860864-16860883 MS.gene47145:CDS 25.0%
CATTCACTAACAACAATCTT+AGG - chr6.3:16859964-16859983 MS.gene47145:CDS 30.0%
GAATGTTAACTGAGAACAAA+TGG + chr6.3:16860584-16860603 None:intergenic 30.0%
!! TGATTTTTGGAGAATACAAG+AGG - chr6.3:16860877-16860896 MS.gene47145:CDS 30.0%
AACAACAATCTTAGGTTAGC+AGG - chr6.3:16859972-16859991 MS.gene47145:CDS 35.0%
AATGAATCTGACTTTGTCAC+TGG - chr6.3:16860960-16860979 MS.gene47145:CDS 35.0%
ATGTCGAAGCACACAATAAT+AGG - chr6.3:16860729-16860748 MS.gene47145:intron 35.0%
CAAAAATCTCGTTCAATCGA+CGG - chr6.3:16860184-16860203 MS.gene47145:CDS 35.0%
GTGAATTGTGTATCACCAAA+TGG - chr6.3:16860798-16860817 MS.gene47145:CDS 35.0%
GTGCTTCGACATTATGTAAT+CGG + chr6.3:16860721-16860740 None:intergenic 35.0%
TCTGGCAATTTACATGTCAA+TGG + chr6.3:16860834-16860853 None:intergenic 35.0%
TGTCGAAGCACACAATAATA+GGG - chr6.3:16860730-16860749 MS.gene47145:intron 35.0%
TTGTTCTCAGTTAACATTCG+AGG - chr6.3:16860585-16860604 MS.gene47145:intron 35.0%
! ACTTCTTTCTTTTCTGCAAC+AGG - chr6.3:16860479-16860498 MS.gene47145:intron 35.0%
!! AATAATAGGGTTGATGCGTT+CGG - chr6.3:16860743-16860762 MS.gene47145:intron 35.0%
!! AATGGTGTTGCTAATCCATT+TGG + chr6.3:16860816-16860835 None:intergenic 35.0%
!! TTTTGGAGAATACAAGAGGT+TGG - chr6.3:16860881-16860900 MS.gene47145:CDS 35.0%
AACTTGCAAAGCATGGGATA+AGG - chr6.3:16860775-16860794 MS.gene47145:CDS 40.0%
AATGAATGTAGGTGCACCTA+TGG + chr6.3:16860139-16860158 None:intergenic 40.0%
ACATGTAAATTGCCAGATGC+AGG - chr6.3:16860837-16860856 MS.gene47145:CDS 40.0%
ACTTGCAAAGCATGGGATAA+GGG - chr6.3:16860776-16860795 MS.gene47145:CDS 40.0%
CAATCGACGGTCAATACTTA+TGG - chr6.3:16860197-16860216 MS.gene47145:CDS 40.0%
CTCAGTTAACATTCGAGGAA+TGG - chr6.3:16860590-16860609 MS.gene47145:intron 40.0%
GGTTCTCAACACTAAACATG+TGG - chr6.3:16860911-16860930 MS.gene47145:CDS 40.0%
TCCAACACAGTTTGATCAGA+TGG + chr6.3:16860540-16860559 None:intergenic 40.0%
TCCATCTGATCAAACTGTGT+TGG - chr6.3:16860536-16860555 MS.gene47145:intron 40.0%
TGCTACGTCACAATGAATGT+AGG + chr6.3:16860150-16860169 None:intergenic 40.0%
AGTGTGCAACTTGCAAAGCA+TGG - chr6.3:16860768-16860787 MS.gene47145:CDS 45.0%
ATACAAGAGGTTGGAAGGAG+TGG - chr6.3:16860890-16860909 MS.gene47145:CDS 45.0%
GGAGAATACAAGAGGTTGGA+AGG - chr6.3:16860885-16860904 MS.gene47145:CDS 45.0%
GTGGATGGTAGCTATGTTTC+TGG - chr6.3:16860996-16861015 MS.gene47145:CDS 45.0%
GTGTGCAACTTGCAAAGCAT+GGG - chr6.3:16860769-16860788 MS.gene47145:CDS 45.0%
TACCATCCACACGAAGATCA+AGG + chr6.3:16860986-16861005 None:intergenic 45.0%
! GGCAGATGTTGTGTTGTTCT+TGG - chr6.3:16860932-16860951 MS.gene47145:CDS 45.0%
!!! ATTAACTAATTTTAAATATT+AGG - chr6.3:16860230-16860249 MS.gene47145:CDS 5.0%
ACTGTCTTTGCACCTGCATC+TGG + chr6.3:16860852-16860871 None:intergenic 50.0%
CAAGTGGCTGCATCCATTGA+CGG - chr6.3:16860113-16860132 MS.gene47145:CDS 50.0%
CTTGATTGCCCAACTCGACT+TGG + chr6.3:16860097-16860116 None:intergenic 50.0%
GCTGACATCCAAGTCGAGTT+GGG - chr6.3:16860086-16860105 MS.gene47145:CDS 50.0%
GGCATTGTGCGTGAAACATG+CGG - chr6.3:16860611-16860630 MS.gene47145:intron 50.0%
GTGCATGTCTTTGCCGAACA+AGG - chr6.3:16860044-16860063 MS.gene47145:CDS 50.0%
TACCATGCGTGCACCTTGTT+CGG + chr6.3:16860060-16860079 None:intergenic 50.0%
!! AGTCGAGTTGGGCAATCAAG+TGG - chr6.3:16860097-16860116 MS.gene47145:CDS 50.0%
AAAACAGCCATCGTCACCGG+AGG - chr6.3:16859996-16860015 MS.gene47145:CDS 55.0%
CGCTGACATCCAAGTCGAGT+TGG - chr6.3:16860085-16860104 MS.gene47145:CDS 55.0%
CGGTTAACTTCACGCCACCA+TGG + chr6.3:16860701-16860720 None:intergenic 55.0%
CTGCATCCATTGACGGCCAT+AGG - chr6.3:16860120-16860139 MS.gene47145:CDS 55.0%
GAAACATGCGGCACGTGCAA+TGG - chr6.3:16860623-16860642 MS.gene47145:intron 55.0%
GAGGGGTAGCATTGTGTGCA+CGG - chr6.3:16860659-16860678 MS.gene47145:intron 55.0%
GGCAAAACAGCCATCGTCAC+CGG - chr6.3:16859993-16860012 MS.gene47145:CDS 55.0%
GGCCTTGATCTTCGTGTGGA+TGG - chr6.3:16860981-16861000 MS.gene47145:CDS 55.0%
!! CACTGGCCTTGATCTTCGTG+TGG - chr6.3:16860977-16860996 MS.gene47145:CDS 55.0%
!! CAGCGGCATTGGCAAAGAGA+CGG - chr6.3:16860022-16860041 MS.gene47145:CDS 55.0%
ACATGCGGCACGTGCAATGG+TGG - chr6.3:16860626-16860645 MS.gene47145:intron 60.0%
CGTCTCTTTGCCAATGCCGC+TGG + chr6.3:16860024-16860043 None:intergenic 60.0%
CTTCACGCCACCATGGCTAC+CGG + chr6.3:16860694-16860713 None:intergenic 60.0%
GGTGCACCTATGGCCGTCAA+TGG + chr6.3:16860129-16860148 None:intergenic 60.0%
TGCCGAACAAGGTGCACGCA+TGG - chr6.3:16860055-16860074 MS.gene47145:CDS 60.0%
!! AATGGTGGACGGGTGCGTGA+GGG - chr6.3:16860641-16860660 MS.gene47145:intron 60.0%
! GCGGCACGTGCAATGGTGGA+CGG - chr6.3:16860630-16860649 MS.gene47145:intron 65.0%
!! ATCGTCACCGGAGGTGCCAG+CGG - chr6.3:16860005-16860024 MS.gene47145:CDS 65.0%
!! ATGGTGGACGGGTGCGTGAG+GGG - chr6.3:16860642-16860661 MS.gene47145:intron 65.0%
!! CAATGGTGGACGGGTGCGTG+AGG - chr6.3:16860640-16860659 MS.gene47145:intron 65.0%
!! CGGCACGTGCAATGGTGGAC+GGG - chr6.3:16860631-16860650 MS.gene47145:intron 65.0%
AGCGTCGCCGGTAGCCATGG+TGG - chr6.3:16860684-16860703 MS.gene47145:intron 70.0%
GCCAATGCCGCTGGCACCTC+CGG + chr6.3:16860015-16860034 None:intergenic 70.0%
GCTAGCGTCGCCGGTAGCCA+TGG - chr6.3:16860681-16860700 MS.gene47145:intron 70.0%
GCTGGCACCTCCGGTGACGA+TGG + chr6.3:16860006-16860025 None:intergenic 70.0%
GTGTGCACGGCTAGCGTCGC+CGG - chr6.3:16860672-16860691 MS.gene47145:intron 70.0%
!! ACCGGAGGTGCCAGCGGCAT+TGG - chr6.3:16860011-16860030 MS.gene47145:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 16859951 16861040 16859951 ID=MS.gene47145
chr6.3 mRNA 16859951 16861040 16859951 ID=MS.gene47145.t1;Parent=MS.gene47145
chr6.3 exon 16860768 16861040 16860768 ID=MS.gene47145.t1.exon1;Parent=MS.gene47145.t1
chr6.3 CDS 16860768 16861040 16860768 ID=cds.MS.gene47145.t1;Parent=MS.gene47145.t1
chr6.3 exon 16859951 16860490 16859951 ID=MS.gene47145.t1.exon2;Parent=MS.gene47145.t1
chr6.3 CDS 16859951 16860490 16859951 ID=cds.MS.gene47145.t1;Parent=MS.gene47145.t1
Gene Sequence

>MS.gene47145

ATGGCAGAAGCTTCATTCACTAACAACAATCTTAGGTTAGCAGGCAAAACAGCCATCGTCACCGGAGGTGCCAGCGGCATTGGCAAAGAGACGGTGCATGTCTTTGCCGAACAAGGTGCACGCATGGTAGTGATCGCTGACATCCAAGTCGAGTTGGGCAATCAAGTGGCTGCATCCATTGACGGCCATAGGTGCACCTACATTCATTGTGACGTAGCAAATAAAGATCAAGTCAAAAATCTCGTTCAATCGACGGTCAATACTTATGGACAAGTAAATATTAACTAATTTTAAATATTAGGTTAACGATGTTTCAAGATTTAATTTTCTCTTTTCGTCTCTATACAAAAACAAAACTTTTTAATTTTTCGAAATATCTTTGTTTGCACAAATGATTCATGATATTAGGTTAACGATGTTTCAAGATTTAAATTTTTCAATGAATTTTTATAGTTATATATCTTTAAAACATTACAAAAATTTCATAAGAGATAGATATGTTGTGTGATATTTTATTTAAAAACAATAACTTCTTTCTTTTCTGCAACAGGTAGATATTATGTTTAGTAATGCTGGGATTGCAAGTCCATCTGATCAAACTGTGTTGGAACTCGACATTTCTCAAGCTGACCATTTGTTCTCAGTTAACATTCGAGGAATGGCATTGTGCGTGAAACATGCGGCACGTGCAATGGTGGACGGGTGCGTGAGGGGTAGCATTGTGTGCACGGCTAGCGTCGCCGGTAGCCATGGTGGCGTGAAGTTAACCGATTACATAATGTCGAAGCACACAATAATAGGGTTGATGCGTTCGGCTAGTGTGCAACTTGCAAAGCATGGGATAAGGGTGAATTGTGTATCACCAAATGGATTAGCAACACCATTGACATGTAAATTGCCAGATGCAGGTGCAAAGACAGTTGATTTGATTTTTGGAGAATACAAGAGGTTGGAAGGAGTGGTTCTCAACACTAAACATGTGGCAGATGTTGTGTTGTTCTTGGTATCTAATGAATCTGACTTTGTCACTGGCCTTGATCTTCGTGTGGATGGTAGCTATGTTTCTGGCAAATCTGAATTAATATTTTAA
Protein sequence

>MS.gene47145.t1

MAEASFTNNNLRLAGKTAIVTGGASGIGKETVHVFAEQGARMVVIADIQVELGNQVAASIDGHRCTYIHCDVANKDQVKNLVQSTVNTYGQVDIMFSNAGIASPSDQTVLELDISQADHLFSVNIRGMALCVKHAARAMVDGCVRGSIVCTASVAGSHGGVKLTDYIMSKHTIIGLMRSASVQLAKHGIRVNCVSPNGLATPLTCKLPDAGAKTVDLIFGEYKRLEGVVLNTKHVADVVLFLVSNESDFVTGLDLRVDGSYVSGKSELIF