AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47440.t1 MTR_1g062940 91.935 186 14 1 5 190 34 218 4.20e-126 354
MS.gene47440.t1 MTR_2g096380 59.091 88 36 0 2 89 12 99 8.20e-37 127
MS.gene47440.t1 MTR_2g096380 60.465 86 34 0 4 89 33 118 5.15e-36 125
MS.gene47440.t1 MTR_4g063100 64.935 77 27 0 4 80 34 110 3.20e-34 122
MS.gene47440.t1 MTR_4g063100 64.935 77 27 0 4 80 5 81 6.55e-34 120
MS.gene47440.t1 MTR_7g035075 62.821 78 29 0 5 82 42 119 1.94e-32 115
MS.gene47440.t1 MTR_1g073170 67.105 76 25 0 5 80 48 123 5.39e-32 116
MS.gene47440.t1 MTR_1g086530 62.821 78 29 0 5 82 61 138 1.20e-31 115
MS.gene47440.t1 MTR_6g006030 61.538 78 30 0 5 82 42 119 2.09e-31 113
MS.gene47440.t1 MTR_1g045610 62.821 78 29 0 5 82 49 126 2.62e-31 114
MS.gene47440.t1 MTR_7g115650 67.568 74 24 0 9 82 44 117 3.62e-31 112
MS.gene47440.t1 MTR_7g076740 53.922 102 46 1 9 109 45 146 3.73e-31 115
MS.gene47440.t1 MTR_1g110460 60.759 79 31 0 4 82 53 131 4.46e-31 115
MS.gene47440.t1 MTR_8g031360 67.123 73 24 0 9 81 46 118 8.00e-31 114
MS.gene47440.t1 MTR_0251s0050 66.234 77 26 0 9 85 45 121 9.25e-31 113
MS.gene47440.t1 MTR_4g091490 69.863 73 22 0 9 81 45 117 1.09e-30 115
MS.gene47440.t1 MTR_1g086510 64.103 78 28 0 5 82 49 126 1.66e-30 112
MS.gene47440.t1 MTR_2g011660 69.863 73 22 0 9 81 45 117 1.95e-30 114
MS.gene47440.t1 MTR_2g089620 69.863 73 22 0 9 81 44 116 2.14e-30 113
MS.gene47440.t1 MTR_4g125520 58.763 97 37 2 9 102 44 140 2.62e-30 113
MS.gene47440.t1 MTR_1g100653 66.250 80 26 1 9 88 44 122 2.88e-30 112
MS.gene47440.t1 MTR_0063s0090 55.435 92 41 0 9 100 44 135 3.71e-30 110
MS.gene47440.t1 MTR_1g100667 43.382 136 65 2 5 128 41 176 5.05e-30 111
MS.gene47440.t1 MTR_4g100720 54.369 103 46 1 9 110 45 147 5.37e-30 108
MS.gene47440.t1 MTR_7g011170 68.493 73 23 0 9 81 44 116 7.38e-30 112
MS.gene47440.t1 MTR_1g017000 63.014 73 27 0 9 81 45 117 1.30e-29 110
MS.gene47440.t1 MTR_7g096930 64.935 77 27 0 9 85 44 120 2.02e-29 110
MS.gene47440.t1 MTR_8g095390 65.753 73 25 0 9 81 44 116 2.48e-29 110
MS.gene47440.t1 MTR_4g057635 63.636 77 28 0 9 85 45 121 2.76e-29 110
MS.gene47440.t1 MTR_0008s0390 65.753 73 25 0 9 81 45 117 3.10e-29 109
MS.gene47440.t1 MTR_0008s0280 53.535 99 45 1 8 106 43 140 3.22e-29 108
MS.gene47440.t1 MTR_0008s0470 49.074 108 41 2 9 113 45 141 3.32e-29 109
MS.gene47440.t1 MTR_1g085640 56.863 102 36 2 9 104 44 143 3.36e-29 111
MS.gene47440.t1 MTR_4g102380 65.753 73 25 0 9 81 44 116 3.37e-29 109
MS.gene47440.t1 MTR_5g007370 45.600 125 59 3 9 131 44 161 3.95e-29 109
MS.gene47440.t1 MTR_4g073420 67.123 73 24 0 9 81 44 116 4.19e-29 109
MS.gene47440.t1 MTR_8g027345 64.103 78 28 0 9 86 44 121 4.92e-29 109
MS.gene47440.t1 MTR_1g043080 63.014 73 27 0 9 81 44 116 5.28e-29 108
MS.gene47440.t1 MTR_3g052430 59.770 87 32 1 9 95 73 156 6.89e-29 112
MS.gene47440.t1 MTR_2g097910 62.162 74 28 0 9 82 52 125 7.07e-29 109
MS.gene47440.t1 MTR_5g029840 67.123 73 24 0 9 81 44 116 9.28e-29 109
MS.gene47440.t1 MTR_1g076150 64.384 73 26 0 9 81 44 116 1.09e-28 107
MS.gene47440.t1 MTR_3g052450 58.065 93 33 2 10 102 73 159 1.19e-28 111
MS.gene47440.t1 MTR_7g117730 61.250 80 31 0 9 88 44 123 1.21e-28 107
MS.gene47440.t1 MTR_4g065017 60.256 78 31 0 5 82 45 122 1.35e-28 108
MS.gene47440.t1 MTR_1g112760 58.750 80 33 0 5 84 41 120 1.36e-28 106
MS.gene47440.t1 MTR_3g097450 65.753 73 25 0 9 81 44 116 1.72e-28 108
MS.gene47440.t1 MTR_8g020490 60.000 80 32 0 5 84 36 115 2.03e-28 107
MS.gene47440.t1 MTR_1g043050 63.014 73 27 0 9 81 44 116 2.08e-28 107
MS.gene47440.t1 MTR_3g028740 63.514 74 27 0 9 82 54 127 2.17e-28 108
MS.gene47440.t1 MTR_3g074520 65.753 73 25 0 9 81 44 116 2.30e-28 108
MS.gene47440.t1 MTR_4g082290 65.753 73 25 0 9 81 44 116 2.39e-28 109
MS.gene47440.t1 MTR_4g485530 62.162 74 28 0 8 81 43 116 2.81e-28 104
MS.gene47440.t1 MTR_3g077110 44.444 117 60 1 5 116 40 156 3.65e-28 108
MS.gene47440.t1 MTR_8g042410 53.000 100 44 1 9 108 69 165 3.66e-28 110
MS.gene47440.t1 MTR_6g055910 59.740 77 31 0 4 80 12 88 3.76e-28 106
MS.gene47440.t1 MTR_4g478180 65.753 73 25 0 9 81 45 117 4.12e-28 108
MS.gene47440.t1 MTR_5g079670 61.644 73 28 0 9 81 43 115 4.94e-28 104
MS.gene47440.t1 MTR_4g082230 65.753 73 25 0 9 81 44 116 5.35e-28 108
MS.gene47440.t1 MTR_6g012690 64.384 73 26 0 9 81 44 116 5.48e-28 107
MS.gene47440.t1 MTR_6g055910 65.278 72 25 0 9 80 46 117 5.82e-28 106
MS.gene47440.t1 MTR_5g078140 60.256 78 31 0 5 82 40 117 6.21e-28 107
MS.gene47440.t1 MTR_2g067420 70.588 68 20 0 9 76 46 113 7.19e-28 107
MS.gene47440.t1 MTR_3g065440 60.256 78 31 0 5 82 40 117 7.30e-28 106
MS.gene47440.t1 MTR_1g085040 63.514 74 27 0 9 82 44 117 1.02e-27 107
MS.gene47440.t1 MTR_7g110830 56.383 94 33 2 9 96 44 135 1.03e-27 107
MS.gene47440.t1 MTR_2g089420 63.889 72 26 0 9 80 43 114 1.39e-27 107
MS.gene47440.t1 MTR_4g105130 60.526 76 30 0 9 84 44 119 1.89e-27 106
MS.gene47440.t1 MTR_5g014990 60.759 79 31 0 10 88 46 124 2.09e-27 105
MS.gene47440.t1 MTR_2g095520 70.149 67 20 0 9 75 45 111 2.34e-27 105
MS.gene47440.t1 MTR_3g083540 64.384 73 26 0 9 81 73 145 2.53e-27 105
MS.gene47440.t1 MTR_2g089450 61.644 73 28 0 9 81 44 116 3.04e-27 103
MS.gene47440.t1 MTR_3g461490 63.014 73 27 0 9 81 44 116 3.81e-27 105
MS.gene47440.t1 MTR_6g009430 60.759 79 31 0 3 81 38 116 4.38e-27 105
MS.gene47440.t1 MTR_2g064160 56.579 76 33 0 9 84 43 118 4.61e-27 104
MS.gene47440.t1 MTR_3g011610 60.000 75 30 0 9 83 69 143 4.75e-27 107
MS.gene47440.t1 MTR_1g017140 65.278 72 25 0 10 81 46 117 7.22e-27 104
MS.gene47440.t1 MTR_3g103570 51.351 111 44 3 10 110 46 156 1.20e-26 103
MS.gene47440.t1 MTR_7g010210 56.962 79 34 0 9 87 44 122 1.34e-26 103
MS.gene47440.t1 MTR_1g021230 42.188 128 66 3 8 131 88 211 1.52e-26 105
MS.gene47440.t1 MTR_7g010210 56.962 79 34 0 9 87 44 122 1.87e-26 102
MS.gene47440.t1 MTR_8g006470 63.889 72 24 2 11 81 44 114 1.92e-26 102
MS.gene47440.t1 MTR_2g099740 57.534 73 31 0 9 81 44 116 2.17e-26 104
MS.gene47440.t1 MTR_8g017540 58.904 73 30 0 9 81 90 162 2.21e-26 103
MS.gene47440.t1 MTR_0197s0010 61.039 77 30 0 5 81 29 105 2.42e-26 100
MS.gene47440.t1 MTR_8g017440 57.534 73 31 0 9 81 44 116 3.08e-26 102
MS.gene47440.t1 MTR_8g017390 58.904 73 30 0 9 81 45 117 3.29e-26 104
MS.gene47440.t1 MTR_8g098860 58.108 74 31 0 9 82 44 117 3.55e-26 102
MS.gene47440.t1 MTR_8g017340 57.534 73 31 0 9 81 45 117 4.17e-26 104
MS.gene47440.t1 MTR_7g102110 58.904 73 30 0 9 81 45 117 4.43e-26 101
MS.gene47440.t1 MTR_3g039990 55.294 85 37 1 5 88 41 125 5.35e-26 101
MS.gene47440.t1 MTR_8g017350 56.164 73 32 0 9 81 45 117 9.20e-26 103
MS.gene47440.t1 MTR_2g034790 57.692 78 33 0 4 81 39 116 1.17e-25 101
MS.gene47440.t1 MTR_8g017500 56.757 74 32 0 9 82 44 117 1.66e-25 100
MS.gene47440.t1 MTR_6g090405 61.111 72 28 0 9 80 45 116 2.13e-25 99.0
MS.gene47440.t1 MTR_2g033170 62.821 78 29 0 5 82 52 129 3.11e-25 100
MS.gene47440.t1 MTR_5g010020 64.179 67 24 0 9 75 44 110 3.77e-25 100
MS.gene47440.t1 MTR_4g121460 60.274 73 29 0 9 81 44 116 4.59e-25 99.8
MS.gene47440.t1 MTR_0140s0030 57.143 77 33 0 9 85 45 121 1.05e-24 98.6
MS.gene47440.t1 MTR_0489s0020 57.143 77 33 0 9 85 45 121 1.05e-24 98.6
MS.gene47440.t1 MTR_4g097570 67.692 65 21 0 9 73 46 110 1.06e-24 97.8
MS.gene47440.t1 MTR_7g087130 60.274 73 29 0 9 81 44 116 1.19e-24 98.6
MS.gene47440.t1 MTR_4g097570 68.750 64 20 0 10 73 46 109 1.38e-24 97.8
MS.gene47440.t1 MTR_4g128670 66.667 66 22 0 10 75 46 111 1.41e-24 98.6
MS.gene47440.t1 MTR_7g111290 64.615 65 23 0 9 73 2 66 2.49e-24 97.8
MS.gene47440.t1 MTR_7g111290 66.154 65 22 0 9 73 44 108 2.64e-24 98.2
MS.gene47440.t1 MTR_7g017260 51.648 91 43 1 9 98 59 149 3.76e-24 96.3
MS.gene47440.t1 MTR_4g123040 67.606 71 23 0 9 79 56 126 4.34e-24 96.7
MS.gene47440.t1 MTR_5g042030 58.904 73 30 0 9 81 39 111 1.26e-23 95.1
MS.gene47440.t1 MTR_2g088170 54.945 91 38 1 4 94 56 143 2.17e-23 96.3
MS.gene47440.t1 MTR_5g079290 57.534 73 31 0 9 81 49 121 2.62e-23 93.6
MS.gene47440.t1 MTR_5g078950 60.000 75 30 0 4 78 34 108 2.90e-23 93.6
MS.gene47440.t1 MTR_5g078910 57.534 73 31 0 9 81 39 111 3.06e-23 94.4
MS.gene47440.t1 MTR_4g029540 60.274 73 27 2 11 82 44 115 9.58e-23 92.8
MS.gene47440.t1 MTR_0001s0360 58.904 73 30 0 9 81 39 111 1.15e-22 91.7
MS.gene47440.t1 MTR_5g079220 56.164 73 32 0 9 81 53 125 1.68e-22 91.7
MS.gene47440.t1 MTR_6g012180 58.824 68 28 0 9 76 44 111 2.64e-22 92.0
MS.gene47440.t1 MTR_8g060940 60.870 69 27 0 9 77 39 107 2.66e-22 90.5
MS.gene47440.t1 MTR_4g019370 60.294 68 27 0 13 80 71 138 2.73e-22 92.4
MS.gene47440.t1 MTR_3g101290 53.623 69 32 0 13 81 70 138 5.28e-22 89.4
MS.gene47440.t1 MTR_5g062790 34.940 166 86 3 5 169 37 181 8.07e-22 90.5
MS.gene47440.t1 MTR_5g088610 55.263 76 33 1 5 79 37 112 9.94e-22 90.9
MS.gene47440.t1 MTR_7g109320 61.644 73 28 0 9 81 44 116 1.63e-21 90.5
MS.gene47440.t1 MTR_5g078800 54.795 73 33 0 9 81 39 111 4.67e-21 87.8
MS.gene47440.t1 MTR_5g078860 56.164 73 32 0 9 81 39 111 5.12e-21 88.2
MS.gene47440.t1 MTR_4g128190 51.852 81 35 2 5 81 26 106 5.88e-21 87.0
MS.gene47440.t1 MTR_5g079120 53.425 73 34 0 9 81 93 165 7.65e-21 87.8
MS.gene47440.t1 MTR_1g083630 50.562 89 41 1 11 99 46 131 8.67e-21 89.4
MS.gene47440.t1 MTR_4g094982 54.412 68 31 0 13 80 38 105 8.90e-21 87.0
MS.gene47440.t1 MTR_5g088080 51.316 76 36 1 5 79 40 115 3.82e-20 85.5
MS.gene47440.t1 MTR_5g088150 51.316 76 36 1 5 79 40 115 3.82e-20 85.5
MS.gene47440.t1 MTR_5g488210 51.316 76 36 1 5 79 40 115 3.82e-20 85.5
MS.gene47440.t1 MTR_2g096380 64.706 51 18 0 39 89 5 55 3.90e-20 83.2
MS.gene47440.t1 MTR_5g088640 51.316 76 36 1 5 79 40 115 4.16e-20 85.5
MS.gene47440.t1 MTR_5g488170 32.759 174 102 3 5 174 40 202 4.77e-20 84.7
MS.gene47440.t1 MTR_0247s0040 55.714 70 31 0 9 78 39 108 5.07e-20 83.2
MS.gene47440.t1 MTR_5g082910 55.385 65 29 0 13 77 52 116 9.46e-20 84.7
MS.gene47440.t1 MTR_5g016510 52.941 68 32 0 13 80 38 105 1.62e-19 84.3
MS.gene47440.t1 MTR_5g078930 52.778 72 34 0 9 80 41 112 2.49e-19 82.4
MS.gene47440.t1 MTR_0193s0090 45.263 95 49 1 9 100 39 133 2.79e-19 81.6
MS.gene47440.t1 MTR_5g049190 54.098 61 28 0 13 73 52 112 1.91e-18 80.5
MS.gene47440.t1 MTR_3g045430 47.500 80 42 0 2 81 38 117 3.32e-18 80.5
MS.gene47440.t1 MTR_6g074860 39.450 109 63 1 13 121 37 142 4.13e-18 79.3
MS.gene47440.t1 MTR_5g041570 48.611 72 37 0 13 84 167 238 7.91e-18 80.5
MS.gene47440.t1 MTR_6g015455 50.000 68 34 0 13 80 38 105 9.49e-18 80.9
MS.gene47440.t1 MTR_4g082040 46.667 75 40 0 13 87 138 212 9.68e-18 80.5
MS.gene47440.t1 MTR_4g063100 69.767 43 13 0 38 80 4 46 1.29e-17 77.0
MS.gene47440.t1 MTR_6g027360 40.698 86 46 1 13 93 111 196 1.37e-17 79.0
MS.gene47440.t1 MTR_6g027340 39.535 86 47 1 13 93 49 134 1.38e-17 77.4
MS.gene47440.t1 MTR_4g105660 52.459 61 29 0 13 73 213 273 7.52e-17 77.8
MS.gene47440.t1 MTR_7g450950 46.032 63 34 0 13 75 190 252 8.33e-17 77.0
MS.gene47440.t1 MTR_3g463400 50.820 61 30 0 13 73 166 226 1.37e-16 77.0
MS.gene47440.t1 MTR_7g061330 47.826 69 36 0 13 81 146 214 3.70e-16 75.9
MS.gene47440.t1 MTR_7g461410 47.826 69 36 0 13 81 146 214 3.70e-16 75.9
MS.gene47440.t1 MTR_7g061330 47.826 69 36 0 13 81 110 178 5.96e-16 75.5
MS.gene47440.t1 MTR_7g086960 39.344 122 57 4 13 123 122 237 7.10e-16 74.7
MS.gene47440.t1 MTR_1g057980 49.206 63 32 0 13 75 113 175 8.91e-16 73.9
MS.gene47440.t1 MTR_5g070020 49.180 61 31 0 13 73 155 215 8.95e-16 74.3
MS.gene47440.t1 MTR_7g037260 34.437 151 81 5 13 159 178 314 9.36e-16 74.3
MS.gene47440.t1 MTR_7g451170 50.820 61 30 0 13 73 224 284 9.56e-16 74.7
MS.gene47440.t1 MTR_3g077650 49.180 61 31 0 13 73 214 274 1.04e-15 74.7
MS.gene47440.t1 MTR_1g026870 33.333 105 70 0 13 117 118 222 1.33e-15 74.7
MS.gene47440.t1 MTR_3g089045 47.297 74 39 0 13 86 49 122 1.39e-15 73.2
MS.gene47440.t1 MTR_7g061550 38.462 104 51 2 11 114 41 131 6.56e-15 72.0
MS.gene47440.t1 MTR_3g110028 35.714 84 54 0 13 96 118 201 6.92e-15 72.4
MS.gene47440.t1 MTR_5g010650 54.098 61 28 0 13 73 143 203 1.09e-14 71.6
MS.gene47440.t1 MTR_4g088015 45.833 72 35 1 13 80 254 325 1.31e-14 71.2
MS.gene47440.t1 MTR_7g035350 49.206 63 32 0 13 75 258 320 1.44e-14 71.2
MS.gene47440.t1 MTR_6g027370 45.588 68 37 0 13 80 132 199 1.45e-14 70.9
MS.gene47440.t1 MTR_1g085880 50.000 76 37 1 5 79 40 115 5.40e-14 67.4
MS.gene47440.t1 MTR_1g085770 50.000 76 37 1 5 79 40 115 1.08e-13 68.2
MS.gene47440.t1 MTR_5g038910 33.566 143 74 6 13 154 59 181 4.21e-13 67.0
MS.gene47440.t1 MTR_5g038910 32.168 143 76 5 13 154 59 181 4.51e-13 67.0
MS.gene47440.t1 MTR_7g037130 32.450 151 84 5 13 159 178 314 9.59e-13 65.9
MS.gene47440.t1 MTR_6g055910 64.286 42 15 0 39 80 6 47 1.61e-12 63.9
MS.gene47440.t1 MTR_5g007300 62.222 45 17 0 9 53 96 140 6.38e-12 60.8
MS.gene47440.t1 MTR_8g468380 39.706 68 41 0 13 80 55 122 4.86e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47440.t1 AT3G53200 44.076 211 86 8 4 189 2 205 5.74e-42 140
MS.gene47440.t1 AT3G53200 43.750 208 86 7 5 188 37 237 1.41e-41 140
MS.gene47440.t1 AT5G59780 65.823 79 27 0 4 82 35 113 1.37e-34 122
MS.gene47440.t1 AT3G46130 64.557 79 28 0 4 82 36 114 3.08e-34 122
MS.gene47440.t1 AT3G46130 63.291 79 29 0 7 85 7 85 1.50e-33 119
MS.gene47440.t1 AT5G59780 65.789 76 26 0 10 85 20 95 4.92e-33 117
MS.gene47440.t1 AT3G46130 65.789 76 26 0 10 85 20 95 7.32e-33 117
MS.gene47440.t1 AT3G30210 68.831 77 24 0 3 79 53 129 1.44e-32 118
MS.gene47440.t1 AT3G01530 59.756 82 33 0 5 86 53 134 5.59e-32 114
MS.gene47440.t1 AT1G16490 69.863 73 22 0 9 81 46 118 7.56e-32 116
MS.gene47440.t1 AT1G68320 62.821 78 29 0 5 82 47 124 9.85e-32 116
MS.gene47440.t1 AT1G79180 43.671 158 81 3 3 153 73 229 1.02e-31 117
MS.gene47440.t1 AT3G27810 60.256 78 31 0 5 82 48 125 1.56e-31 114
MS.gene47440.t1 AT3G24310 64.103 78 28 0 5 82 46 123 2.33e-31 115
MS.gene47440.t1 AT3G27810 63.014 73 27 0 10 82 4 76 2.34e-31 112
MS.gene47440.t1 AT4G13480 64.103 78 28 0 5 82 34 111 2.66e-31 114
MS.gene47440.t1 AT5G40350 61.039 77 30 0 5 81 45 121 7.73e-31 112
MS.gene47440.t1 AT3G61250 65.753 73 25 0 9 81 44 116 9.58e-31 114
MS.gene47440.t1 AT4G05100 69.863 73 22 0 9 81 45 117 1.33e-30 114
MS.gene47440.t1 AT1G79180 44.737 152 76 3 9 153 46 196 1.80e-30 113
MS.gene47440.t1 AT5G14750 47.321 112 52 2 5 110 44 154 1.87e-30 110
MS.gene47440.t1 AT4G28110 68.493 73 23 0 9 81 44 116 1.92e-30 112
MS.gene47440.t1 AT3G23250 50.893 112 53 1 9 120 44 153 2.22e-30 112
MS.gene47440.t1 AT5G40350 63.889 72 26 0 10 81 5 76 2.35e-30 109
MS.gene47440.t1 AT1G48000 62.667 75 28 0 9 83 64 138 4.17e-30 110
MS.gene47440.t1 AT4G22680 51.923 104 43 1 9 112 44 140 4.19e-30 111
MS.gene47440.t1 AT3G01140 49.123 114 48 2 9 122 44 147 4.24e-30 113
MS.gene47440.t1 AT5G61420 65.789 76 26 0 9 84 44 119 5.64e-30 113
MS.gene47440.t1 AT2G47190 60.256 78 31 0 5 82 48 125 6.14e-30 111
MS.gene47440.t1 AT4G12350 48.276 116 50 2 9 121 44 152 6.34e-30 111
MS.gene47440.t1 AT3G01140 49.123 114 48 2 9 122 87 190 7.18e-30 113
MS.gene47440.t1 AT1G18570 68.493 73 23 0 9 81 45 117 7.20e-30 112
MS.gene47440.t1 AT4G34990 67.123 73 24 0 9 81 44 116 1.05e-29 110
MS.gene47440.t1 AT3G12820 60.920 87 34 0 9 95 46 132 1.12e-29 109
MS.gene47440.t1 AT5G07700 65.753 73 25 0 9 81 44 116 1.18e-29 112
MS.gene47440.t1 AT5G07700 65.753 73 25 0 9 81 44 116 1.18e-29 112
MS.gene47440.t1 AT4G21440 67.123 73 24 0 9 81 44 116 1.21e-29 112
MS.gene47440.t1 AT2G31180 48.305 118 49 2 9 125 44 150 1.26e-29 110
MS.gene47440.t1 AT5G15310 67.123 73 24 0 9 81 44 116 1.54e-29 111
MS.gene47440.t1 AT1G06180 62.821 78 29 0 9 86 44 121 1.64e-29 109
MS.gene47440.t1 AT5G15310 67.123 73 24 0 9 81 44 116 1.64e-29 111
MS.gene47440.t1 AT1G22640 67.123 73 24 0 9 81 44 116 1.79e-29 109
MS.gene47440.t1 AT5G54230 65.753 73 25 0 9 81 44 116 1.83e-29 111
MS.gene47440.t1 AT5G15310 67.123 73 24 0 9 81 44 116 2.07e-29 109
MS.gene47440.t1 AT1G25340 56.962 79 34 0 4 82 45 123 2.39e-29 110
MS.gene47440.t1 AT4G38620 67.123 73 24 0 9 81 44 116 2.83e-29 109
MS.gene47440.t1 AT5G07690 58.065 93 37 1 9 101 44 134 3.18e-29 110
MS.gene47440.t1 AT4G09460 64.384 73 26 0 9 81 44 116 7.34e-29 107
MS.gene47440.t1 AT5G14750 49.038 104 46 2 13 110 18 120 7.39e-29 105
MS.gene47440.t1 AT2G16720 65.753 73 25 0 9 81 44 116 7.42e-29 108
MS.gene47440.t1 AT1G35515 45.000 120 61 1 9 123 44 163 1.02e-28 106
MS.gene47440.t1 AT5G23000 67.123 73 24 0 9 81 45 117 1.17e-28 109
MS.gene47440.t1 AT5G65790 62.500 80 30 0 10 89 46 125 1.23e-28 109
MS.gene47440.t1 AT4G26930 60.714 84 30 1 11 94 53 133 1.29e-28 110
MS.gene47440.t1 AT1G09540 62.821 78 29 0 5 82 40 117 1.47e-28 109
MS.gene47440.t1 AT5G65230 64.865 74 26 0 8 81 43 116 1.51e-28 108
MS.gene47440.t1 AT3G02940 65.753 73 25 0 9 81 44 116 1.51e-28 108
MS.gene47440.t1 AT5G16770 67.123 73 24 0 9 81 44 116 2.10e-28 108
MS.gene47440.t1 AT5G16770 67.123 73 24 0 9 81 44 116 2.10e-28 108
MS.gene47440.t1 AT3G02940 65.753 73 25 0 9 81 44 116 2.25e-28 108
MS.gene47440.t1 AT3G02940 65.753 73 25 0 9 81 44 116 2.25e-28 108
MS.gene47440.t1 AT5G26660 63.514 74 27 0 9 82 44 117 2.28e-28 108
MS.gene47440.t1 AT5G12870 60.256 78 31 0 5 82 46 123 2.47e-28 107
MS.gene47440.t1 AT3G12820 69.565 69 21 0 13 81 2 70 2.49e-28 105
MS.gene47440.t1 AT5G40330 45.045 111 58 1 9 119 44 151 2.56e-28 105
MS.gene47440.t1 AT5G26660 63.014 73 27 0 10 82 14 86 2.63e-28 108
MS.gene47440.t1 AT5G62320 64.384 73 26 0 9 81 52 124 2.92e-28 106
MS.gene47440.t1 AT5G16770 67.123 73 24 0 9 81 44 116 3.10e-28 108
MS.gene47440.t1 AT5G16770 67.123 73 24 0 9 81 44 116 3.10e-28 108
MS.gene47440.t1 AT3G12720 56.250 80 35 0 5 84 50 129 3.53e-28 107
MS.gene47440.t1 AT1G56160 67.123 73 24 0 9 81 46 118 3.88e-28 107
MS.gene47440.t1 AT3G13540 63.158 76 28 0 9 84 55 130 4.02e-28 105
MS.gene47440.t1 AT5G10280 63.514 74 27 0 8 81 43 116 4.32e-28 107
MS.gene47440.t1 AT3G49690 61.250 80 31 0 10 89 46 125 4.69e-28 107
MS.gene47440.t1 AT1G57560 51.546 97 47 0 9 105 44 140 4.75e-28 106
MS.gene47440.t1 AT4G17785 65.753 73 25 0 9 81 45 117 4.75e-28 107
MS.gene47440.t1 AT5G55020 64.865 74 26 0 9 82 58 131 5.38e-28 109
MS.gene47440.t1 AT1G57560 64.384 73 26 0 9 81 44 116 5.46e-28 107
MS.gene47440.t1 AT3G27920 60.274 73 29 0 9 81 46 118 5.61e-28 105
MS.gene47440.t1 AT4G17785 65.753 73 25 0 9 81 45 117 5.69e-28 107
MS.gene47440.t1 AT5G52260 65.385 78 27 0 3 80 38 115 6.86e-28 105
MS.gene47440.t1 AT3G08500 64.865 74 26 0 9 82 62 135 9.08e-28 107
MS.gene47440.t1 AT4G37780 60.000 80 32 0 10 89 46 125 1.16e-27 105
MS.gene47440.t1 AT5G57620 62.338 77 29 0 10 86 46 122 1.34e-27 106
MS.gene47440.t1 AT5G52600 57.692 78 33 0 9 86 44 121 1.47e-27 103
MS.gene47440.t1 AT4G01680 60.526 76 30 0 9 84 44 119 1.58e-27 104
MS.gene47440.t1 AT2G32460 50.505 99 41 2 9 107 50 140 1.58e-27 108
MS.gene47440.t1 AT4G25560 61.538 78 30 0 3 80 36 113 1.59e-27 105
MS.gene47440.t1 AT2G32460 50.505 99 41 2 9 107 38 128 1.63e-27 108
MS.gene47440.t1 AT5G35550 48.515 101 48 1 2 102 42 138 1.95e-27 104
MS.gene47440.t1 AT5G60890 62.162 74 28 0 9 82 44 117 2.16e-27 105
MS.gene47440.t1 AT3G48920 59.740 77 31 0 9 85 50 126 2.91e-27 103
MS.gene47440.t1 AT3G11440 56.977 86 34 1 9 94 73 155 3.26e-27 107
MS.gene47440.t1 AT1G66230 60.811 74 29 0 9 82 44 117 3.99e-27 104
MS.gene47440.t1 AT4G01680 60.526 76 30 0 9 84 44 119 4.22e-27 105
MS.gene47440.t1 AT3G11440 58.333 84 32 1 11 94 75 155 5.19e-27 107
MS.gene47440.t1 AT3G11440 58.333 84 32 1 11 94 75 155 5.19e-27 107
MS.gene47440.t1 AT3G11440 58.333 84 32 1 11 94 75 155 5.19e-27 107
MS.gene47440.t1 AT5G35550 53.191 94 40 1 9 102 46 135 5.33e-27 103
MS.gene47440.t1 AT1G25340 60.563 71 28 0 12 82 48 118 5.81e-27 103
MS.gene47440.t1 AT3G47600 54.118 85 36 1 1 82 27 111 6.51e-27 104
MS.gene47440.t1 AT5G56110 63.014 73 27 0 9 81 44 116 7.11e-27 104
MS.gene47440.t1 AT5G06100 56.977 86 34 1 9 94 64 146 7.69e-27 105
MS.gene47440.t1 AT3G13890 57.534 73 31 0 9 81 44 116 9.31e-27 104
MS.gene47440.t1 AT1G25340 60.563 71 28 0 12 82 48 118 1.25e-26 103
MS.gene47440.t1 AT5G06100 56.977 86 34 1 9 94 64 146 1.27e-26 105
MS.gene47440.t1 AT5G06100 56.977 86 34 1 9 94 64 146 1.27e-26 105
MS.gene47440.t1 AT5G06100 56.977 86 34 1 9 94 64 146 1.27e-26 105
MS.gene47440.t1 AT5G06100 56.977 86 34 1 9 94 64 146 1.27e-26 105
MS.gene47440.t1 AT5G16600 60.811 74 29 0 9 82 44 117 1.45e-26 103
MS.gene47440.t1 AT1G74080 63.380 71 26 0 9 79 44 114 1.75e-26 103
MS.gene47440.t1 AT3G06490 66.667 75 25 0 8 82 50 124 1.79e-26 103
MS.gene47440.t1 AT2G47460 62.162 74 28 0 9 82 44 117 2.08e-26 103
MS.gene47440.t1 AT4G01680 60.000 75 30 0 10 84 57 131 2.30e-26 103
MS.gene47440.t1 AT1G63910 59.459 74 30 0 9 82 44 117 3.24e-26 103
MS.gene47440.t1 AT1G34670 63.014 73 27 0 9 81 44 116 4.45e-26 102
MS.gene47440.t1 AT5G62470 58.025 81 33 1 9 88 44 124 7.12e-26 102
MS.gene47440.t1 AT2G36890 63.014 73 27 0 9 81 45 117 7.95e-26 101
MS.gene47440.t1 AT3G47600 59.459 74 30 0 9 82 44 117 8.89e-26 101
MS.gene47440.t1 AT3G28470 62.687 67 25 0 9 75 44 110 9.16e-26 101
MS.gene47440.t1 AT5G49330 61.644 73 28 0 9 81 44 116 9.59e-26 101
MS.gene47440.t1 AT3G62610 59.459 74 30 0 9 82 44 117 1.06e-25 101
MS.gene47440.t1 AT5G49620 62.821 78 29 0 5 82 54 131 1.20e-25 100
MS.gene47440.t1 AT2G36890 63.014 73 27 0 9 81 86 158 1.36e-25 101
MS.gene47440.t1 AT1G74650 52.688 93 42 1 9 99 44 136 1.93e-25 100
MS.gene47440.t1 AT5G14340 60.811 74 29 0 9 82 56 129 2.30e-25 99.4
MS.gene47440.t1 AT3G13890 55.556 72 32 0 11 82 55 126 3.93e-25 100
MS.gene47440.t1 AT1G08810 58.442 77 32 0 5 81 40 116 9.42e-25 97.8
MS.gene47440.t1 AT3G28910 60.274 73 29 0 9 81 44 116 1.14e-24 98.6
MS.gene47440.t1 AT2G26960 50.538 93 43 1 9 101 52 141 1.37e-24 99.8
MS.gene47440.t1 AT1G74430 56.164 73 32 0 9 81 44 116 3.30e-24 96.3
MS.gene47440.t1 AT3G60460 59.722 72 27 2 11 81 45 115 5.96e-24 96.3
MS.gene47440.t1 AT5G62470 58.025 81 32 2 9 88 44 123 1.07e-23 96.3
MS.gene47440.t1 AT2G26950 47.826 92 45 1 3 94 42 130 3.46e-23 95.1
MS.gene47440.t1 AT1G18710 53.425 73 34 0 9 81 44 116 5.59e-23 92.8
MS.gene47440.t1 AT1G66370 56.944 72 31 0 9 80 40 111 9.22e-23 92.0
MS.gene47440.t1 AT5G49620 53.261 92 29 1 5 82 54 145 4.70e-22 91.3
MS.gene47440.t1 AT1G66380 58.333 72 30 0 9 80 7 78 1.13e-21 85.5
MS.gene47440.t1 AT1G66380 59.722 72 29 0 9 80 40 111 1.37e-21 86.3
MS.gene47440.t1 AT5G14750 48.052 77 34 1 23 93 1 77 2.42e-21 85.5
MS.gene47440.t1 AT5G14750 48.052 77 34 1 23 93 1 77 2.42e-21 85.5
MS.gene47440.t1 AT3G23250 38.571 140 80 3 23 161 1 135 3.62e-21 87.4
MS.gene47440.t1 AT2G39880 58.333 72 30 0 13 84 83 154 3.85e-21 89.4
MS.gene47440.t1 AT3G50060 55.882 68 30 0 13 80 39 106 5.08e-21 88.2
MS.gene47440.t1 AT5G67300 54.412 68 31 0 13 80 39 106 1.32e-20 87.4
MS.gene47440.t1 AT1G56650 58.333 72 30 0 9 80 40 111 1.50e-20 86.3
MS.gene47440.t1 AT1G22640 62.712 59 22 0 23 81 1 59 1.61e-20 85.1
MS.gene47440.t1 AT3G55730 39.259 135 73 4 13 146 89 215 3.08e-20 87.4
MS.gene47440.t1 AT1G66390 58.333 72 30 0 9 80 40 111 3.59e-20 85.1
MS.gene47440.t1 AT1G17950 36.641 131 74 2 13 143 38 159 5.40e-19 82.0
MS.gene47440.t1 AT4G37260 50.000 72 36 0 13 84 46 117 6.36e-19 82.8
MS.gene47440.t1 AT5G59780 71.111 45 13 0 38 82 4 48 7.64e-19 79.7
MS.gene47440.t1 AT3G46130 71.111 45 13 0 38 82 4 48 9.72e-19 80.1
MS.gene47440.t1 AT2G23290 52.941 68 32 0 13 80 46 113 1.93e-18 81.3
MS.gene47440.t1 AT3G09230 54.412 68 31 0 13 80 88 155 3.77e-18 81.3
MS.gene47440.t1 AT1G69560 48.611 72 37 0 13 84 140 211 5.22e-18 80.5
MS.gene47440.t1 AT5G40360 28.070 171 101 2 13 183 191 339 5.75e-18 80.5
MS.gene47440.t1 AT1G69560 48.611 72 37 0 13 84 156 227 5.78e-18 80.5
MS.gene47440.t1 AT5G02320 34.000 150 77 5 13 161 160 288 1.68e-17 80.1
MS.gene47440.t1 AT5G02320 34.000 150 77 5 13 161 160 288 1.68e-17 80.1
MS.gene47440.t1 AT5G02320 34.000 150 77 5 13 161 100 228 1.87e-17 79.7
MS.gene47440.t1 AT4G33450 50.000 68 34 0 13 80 52 119 2.24e-17 77.8
MS.gene47440.t1 AT3G29020 40.449 89 52 1 13 101 98 185 2.35e-17 77.4
MS.gene47440.t1 AT1G26780 50.000 68 34 0 13 80 131 198 2.68e-17 79.0
MS.gene47440.t1 AT1G26780 50.000 68 34 0 13 80 131 198 2.84e-17 77.8
MS.gene47440.t1 AT3G29020 40.449 89 52 1 13 101 100 187 3.06e-17 78.2
MS.gene47440.t1 AT4G18770 52.459 61 29 0 13 73 250 310 3.88e-17 78.6
MS.gene47440.t1 AT2G25230 45.333 75 40 1 13 87 59 132 5.30e-17 76.3
MS.gene47440.t1 AT5G17800 46.667 75 40 0 11 85 124 198 5.35e-17 77.8
MS.gene47440.t1 AT1G71030 50.000 66 33 0 16 81 5 70 8.97e-17 74.7
MS.gene47440.t1 AT4G00540 50.000 70 35 0 13 82 139 208 9.13e-17 77.4
MS.gene47440.t1 AT1G71030 50.000 66 33 0 16 81 19 84 1.20e-16 74.7
MS.gene47440.t1 AT4G00540 50.000 70 35 0 13 82 137 206 1.34e-16 77.0
MS.gene47440.t1 AT5G58850 52.459 61 29 0 13 73 138 198 2.45e-16 76.3
MS.gene47440.t1 AT1G73410 50.000 70 35 0 13 82 39 108 2.76e-16 74.7
MS.gene47440.t1 AT1G73410 50.000 70 35 0 13 82 39 108 3.64e-16 73.6
MS.gene47440.t1 AT5G11050 52.459 61 29 0 13 73 138 198 9.07e-16 74.7
MS.gene47440.t1 AT3G27785 49.180 61 31 0 13 73 222 282 1.36e-15 74.3
MS.gene47440.t1 AT3G09370 47.059 68 36 0 13 80 168 235 2.28e-15 73.9
MS.gene47440.t1 AT3G09370 47.059 68 36 0 13 80 163 230 2.41e-15 73.6
MS.gene47440.t1 AT3G09370 47.059 68 36 0 13 80 176 243 2.78e-15 73.6
MS.gene47440.t1 AT1G18960 43.056 72 39 1 10 81 40 109 4.90e-15 72.0
MS.gene47440.t1 AT2G37630 43.421 76 43 0 11 86 38 113 6.64e-15 72.0
MS.gene47440.t1 AT5G11510 42.029 69 40 0 13 81 114 182 2.54e-14 70.9
MS.gene47440.t1 AT5G11510 42.029 69 40 0 13 81 114 182 2.58e-14 70.9
MS.gene47440.t1 AT5G11510 42.029 69 40 0 13 81 114 182 2.58e-14 70.9
MS.gene47440.t1 AT5G11510 42.029 69 40 0 13 81 114 182 2.58e-14 70.9
MS.gene47440.t1 AT5G11510 42.029 69 40 0 13 81 114 182 2.78e-14 70.9
MS.gene47440.t1 AT4G32730 42.029 69 40 0 13 81 120 188 2.91e-14 70.9
MS.gene47440.t1 AT4G32730 42.029 69 40 0 13 81 120 188 2.91e-14 70.9
MS.gene47440.t1 AT4G32730 42.029 69 40 0 13 81 120 188 2.91e-14 70.9
MS.gene47440.t1 AT4G32730 42.029 69 40 0 13 81 120 188 2.91e-14 70.9
MS.gene47440.t1 AT4G32730 42.029 69 40 0 13 81 120 188 2.99e-14 70.5
MS.gene47440.t1 AT5G40430 31.818 110 73 2 13 122 86 193 3.50e-13 66.2
MS.gene47440.t1 AT4G25560 58.696 46 19 0 35 80 2 47 4.95e-13 65.5
MS.gene47440.t1 AT2G02820 40.000 70 42 0 13 82 63 132 2.20e-12 64.7
MS.gene47440.t1 AT2G02820 40.000 70 42 0 13 82 63 132 2.78e-12 64.7
MS.gene47440.t1 AT1G14350 40.000 70 42 0 13 82 58 127 3.21e-12 64.7
MS.gene47440.t1 AT1G14350 40.000 70 42 0 13 82 58 127 3.21e-12 64.7
MS.gene47440.t1 AT2G02820 40.000 70 42 0 13 82 63 132 3.82e-12 64.3
MS.gene47440.t1 AT5G61420 69.231 39 12 0 46 84 2 40 2.43e-11 61.6
MS.gene47440.t1 AT5G39700 36.364 77 49 0 13 89 89 165 5.89e-11 59.3
MS.gene47440.t1 AT1G14350 37.975 79 47 1 4 82 8 84 6.51e-11 60.8
MS.gene47440.t1 AT1G14350 37.975 79 47 1 4 82 8 84 6.51e-11 60.8
MS.gene47440.t1 AT1G74650 48.333 60 29 1 42 99 1 60 9.66e-11 59.7

Find 40 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCTCTTCAACATTAAA+AGG 0.180903 1.4:+51784344 None:intergenic
TATGATACTTGGGATTATTC+AGG 0.272070 1.4:-51783084 MS.gene47440:CDS
ATTTCATTGTCTGTTCTTCC+TGG 0.279245 1.4:+51783539 None:intergenic
GGTGACAAGGAAAATGAATT+AGG 0.281462 1.4:-51783162 MS.gene47440:CDS
ACAATGAAATCAAGAATTAT+TGG 0.301012 1.4:-51783526 MS.gene47440:CDS
AAAGGGCCATGTTTGAGATT+TGG 0.303849 1.4:+51784362 None:intergenic
TGGATAGAAGAATTGCAAAA+TGG 0.332850 1.4:-51783189 MS.gene47440:CDS
AAGATTGCTCGTAGGCTTCC+AGG 0.337137 1.4:-51783557 MS.gene47440:CDS
GAAGAATTGCAAAATGGATT+TGG 0.337908 1.4:-51783183 MS.gene47440:CDS
TTTGCTATTGTGCAGGGCTT+AGG 0.355465 1.4:-51784430 MS.gene47440:CDS
CTCAAGAAGAATATGATACT+TGG 0.373687 1.4:-51783095 MS.gene47440:CDS
ACATTTGTTTGCTATTGTGC+AGG 0.396509 1.4:-51784437 MS.gene47440:CDS
CAGTTGTCCCTTATCAGATT+GGG 0.398944 1.4:-51783253 MS.gene47440:CDS
TCTCATTCCCCAATCTGATA+AGG 0.405428 1.4:+51783245 None:intergenic
CTTTGTCTCGCCCTCACTGT+TGG 0.413090 1.4:+51783290 None:intergenic
TGGAAGCCTACGAGCAATCT+TGG 0.418838 1.4:+51783559 None:intergenic
CTCATTCCCCAATCTGATAA+GGG 0.425206 1.4:+51783246 None:intergenic
GATATTCTACTTTCATGATA+AGG 0.428909 1.4:+51783216 None:intergenic
GTGGTAAAAGCTGTAGGTTA+AGG 0.437445 1.4:-51784403 MS.gene47440:CDS
AGTTCAACTTCAGCAGCAAT+GGG 0.438061 1.4:-51784315 MS.gene47440:CDS
ACAGTTGTCCCTTATCAGAT+TGG 0.441459 1.4:-51783254 MS.gene47440:CDS
TAGTTCAACTTCAGCAGCAA+TGG 0.486089 1.4:-51784316 MS.gene47440:CDS
CATTTGTTTGCTATTGTGCA+GGG 0.502874 1.4:-51784436 MS.gene47440:CDS
TGTTGTTGGAATCATGTGCT+AGG 0.515250 1.4:+51783331 None:intergenic
TCTCCTCTTCAACATTAAAA+GGG 0.538793 1.4:+51784345 None:intergenic
ATGAAAGTAGAATATCAGAT+TGG 0.543464 1.4:-51783209 MS.gene47440:CDS
CAAGTATCATATTCTTCTTG+AGG 0.550007 1.4:+51783096 None:intergenic
TCAAGAAGAATATGATACTT+GGG 0.556375 1.4:-51783094 MS.gene47440:CDS
CAACAGTGAGGGCGAGACAA+AGG 0.573104 1.4:-51783289 MS.gene47440:CDS
GTAAAAGCTGTAGGTTAAGG+TGG 0.582682 1.4:-51784400 MS.gene47440:CDS
GGAGAAGTGGTAAAAGCTGT+AGG 0.586752 1.4:-51784409 MS.gene47440:CDS
AGAGTACAAGTTCAACAAGA+AGG 0.589009 1.4:-51783485 MS.gene47440:intron
TGTGCAGGGCTTAGGAGAAG+TGG 0.594454 1.4:-51784422 MS.gene47440:CDS
GATGTGATTTCCAACAGTGA+GGG 0.606719 1.4:-51783300 MS.gene47440:CDS
CTTCGTCCAAATCTCAAACA+TGG 0.606795 1.4:-51784368 MS.gene47440:CDS
AGTTGTCCCTTATCAGATTG+GGG 0.608510 1.4:-51783252 MS.gene47440:CDS
GCAAAATGGATTTGGTGACA+AGG 0.627552 1.4:-51783175 MS.gene47440:CDS
TGATGTGATTTCCAACAGTG+AGG 0.650894 1.4:-51783301 MS.gene47440:CDS
GGTGGTCCAAGATTGCTCGT+AGG 0.699809 1.4:-51783565 MS.gene47440:CDS
GTTCAACTTCAGCAGCAATG+GGG 0.741229 1.4:-51784314 MS.gene47440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAAATATAAATATACA+CGG + chr1.4:51783747-51783766 None:intergenic 10.0%
!! AAATTATCCTTATTAACTAT+TGG - chr1.4:51783482-51783501 MS.gene47440:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr1.4:51783483-51783502 None:intergenic 15.0%
!!! ATTTTTTCAAAGAATATTGA+CGG - chr1.4:51783758-51783777 MS.gene47440:intron 15.0%
!!! CAAGATTTTAATAGTATAAA+TGG - chr1.4:51784370-51784389 MS.gene47440:CDS 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr1.4:51783609-51783628 MS.gene47440:intron 15.0%
!!! TACATTTTTTTTTTATTCTC+AGG - chr1.4:51784130-51784149 MS.gene47440:intron 15.0%
!!! TTATATTTTTTCAACTTCAT+AGG + chr1.4:51783276-51783295 None:intergenic 15.0%
!! AAACTAACCAATAGTTAATA+AGG + chr1.4:51783492-51783511 None:intergenic 20.0%
!! ACAATGAAATCAAGAATTAT+TGG - chr1.4:51783982-51784001 MS.gene47440:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr1.4:51783569-51783588 MS.gene47440:intron 20.0%
!! ATGATATTAATAGCACAAAT+AGG + chr1.4:51784052-51784071 None:intergenic 20.0%
!! GTAACAATAACAATGAAAAT+AGG - chr1.4:51783922-51783941 MS.gene47440:intron 20.0%
!!! TAGTTTTCAAAGTAATACTT+TGG - chr1.4:51783506-51783525 MS.gene47440:CDS 20.0%
! AAGTGTGTGTGAATTAAAAA+AGG + chr1.4:51784111-51784130 None:intergenic 25.0%
! AATCTATAGCAATCTATACT+AGG + chr1.4:51783856-51783875 None:intergenic 25.0%
! ACAATAACAATGAAAATAGG+TGG - chr1.4:51783925-51783944 MS.gene47440:intron 25.0%
! ATGAAAGTAGAATATCAGAT+TGG - chr1.4:51784299-51784318 MS.gene47440:intron 25.0%
! GATATTCTACTTTCATGATA+AGG + chr1.4:51784295-51784314 None:intergenic 25.0%
! TCAAGAAGAATATGATACTT+GGG - chr1.4:51784414-51784433 MS.gene47440:CDS 25.0%
! TGTAAGAACTAATGTTACAA+AGG - chr1.4:51783675-51783694 MS.gene47440:intron 25.0%
! TTACTAGTTACTACTAACAT+GGG + chr1.4:51783237-51783256 None:intergenic 25.0%
CAAGTATCATATTCTTCTTG+AGG + chr1.4:51784415-51784434 None:intergenic 30.0%
CTCAAGAAGAATATGATACT+TGG - chr1.4:51784413-51784432 MS.gene47440:CDS 30.0%
GTTACTAGTTACTACTAACA+TGG + chr1.4:51783238-51783257 None:intergenic 30.0%
TATGATACTTGGGATTATTC+AGG - chr1.4:51784424-51784443 MS.gene47440:CDS 30.0%
TCTCCTCTTCAACATTAAAA+GGG + chr1.4:51783166-51783185 None:intergenic 30.0%
TGGATAGAAGAATTGCAAAA+TGG - chr1.4:51784319-51784338 MS.gene47440:CDS 30.0%
! GAAGAATTGCAAAATGGATT+TGG - chr1.4:51784325-51784344 MS.gene47440:CDS 30.0%
! TCATAGGCTTAGACATTTTA+TGG + chr1.4:51783260-51783279 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr1.4:51783400-51783419 None:intergenic 30.0%
!! GGATTATTCAGGTTTTCTAT+GGG - chr1.4:51784435-51784454 MS.gene47440:CDS 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr1.4:51783401-51783420 MS.gene47440:intron 30.0%
AGAGTACAAGTTCAACAAGA+AGG - chr1.4:51784023-51784042 MS.gene47440:intron 35.0%
ATTTCATTGTCTGTTCTTCC+TGG + chr1.4:51783972-51783991 None:intergenic 35.0%
CTCTCCTCTTCAACATTAAA+AGG + chr1.4:51783167-51783186 None:intergenic 35.0%
GGTGACAAGGAAAATGAATT+AGG - chr1.4:51784346-51784365 MS.gene47440:CDS 35.0%
GTAGTGTGCTGAGTATTAAT+TGG - chr1.4:51783531-51783550 MS.gene47440:CDS 35.0%
TGTGCTGAGTATTAATTGGA+GGG - chr1.4:51783535-51783554 MS.gene47440:CDS 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr1.4:51783635-51783654 MS.gene47440:intron 35.0%
!! ACATTTGTTTGCTATTGTGC+AGG - chr1.4:51783071-51783090 MS.gene47440:CDS 35.0%
!! CACATCAATGCTTTTGTTGT+TGG + chr1.4:51784194-51784213 None:intergenic 35.0%
!! CATTTGTTTGCTATTGTGCA+GGG - chr1.4:51783072-51783091 MS.gene47440:CDS 35.0%
!! GGGATTATTCAGGTTTTCTA+TGG - chr1.4:51784434-51784453 MS.gene47440:CDS 35.0%
ACAGTTGTCCCTTATCAGAT+TGG - chr1.4:51784254-51784273 MS.gene47440:intron 40.0%
AGTTCAACTTCAGCAGCAAT+GGG - chr1.4:51783193-51783212 MS.gene47440:CDS 40.0%
AGTTGTCCCTTATCAGATTG+GGG - chr1.4:51784256-51784275 MS.gene47440:intron 40.0%
CAGTTGTCCCTTATCAGATT+GGG - chr1.4:51784255-51784274 MS.gene47440:intron 40.0%
CTCATTCCCCAATCTGATAA+GGG + chr1.4:51784265-51784284 None:intergenic 40.0%
CTTCGTCCAAATCTCAAACA+TGG - chr1.4:51783140-51783159 MS.gene47440:CDS 40.0%
GATGTGATTTCCAACAGTGA+GGG - chr1.4:51784208-51784227 MS.gene47440:intron 40.0%
GTAAAAGCTGTAGGTTAAGG+TGG - chr1.4:51783108-51783127 MS.gene47440:CDS 40.0%
GTGGTAAAAGCTGTAGGTTA+AGG - chr1.4:51783105-51783124 MS.gene47440:CDS 40.0%
GTGTGCTGAGTATTAATTGG+AGG - chr1.4:51783534-51783553 MS.gene47440:CDS 40.0%
TAGTTCAACTTCAGCAGCAA+TGG - chr1.4:51783192-51783211 MS.gene47440:CDS 40.0%
TCTCATTCCCCAATCTGATA+AGG + chr1.4:51784266-51784285 None:intergenic 40.0%
TGATGTGATTTCCAACAGTG+AGG - chr1.4:51784207-51784226 MS.gene47440:intron 40.0%
TGTTGTTGGAATCATGTGCT+AGG + chr1.4:51784180-51784199 None:intergenic 40.0%
! AAAGGGCCATGTTTGAGATT+TGG + chr1.4:51783149-51783168 None:intergenic 40.0%
! TGGCCCTTTTAATGTTGAAG+AGG - chr1.4:51783160-51783179 MS.gene47440:CDS 40.0%
!! GCAAAATGGATTTGGTGACA+AGG - chr1.4:51784333-51784352 MS.gene47440:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+TGG - chr1.4:51783639-51783658 MS.gene47440:intron 40.0%
!!! GACACTCATTTTGAAACGGA+TGG + chr1.4:51783658-51783639 None:intergenic 40.0%
GGAGAAGTGGTAAAAGCTGT+AGG - chr1.4:51783099-51783118 MS.gene47440:CDS 45.0%
GTTCAACTTCAGCAGCAATG+GGG - chr1.4:51783194-51783213 MS.gene47440:CDS 45.0%
!! TTTGCTATTGTGCAGGGCTT+AGG - chr1.4:51783078-51783097 MS.gene47440:CDS 45.0%
AAGATTGCTCGTAGGCTTCC+AGG - chr1.4:51783951-51783970 MS.gene47440:intron 50.0%
TGGAAGCCTACGAGCAATCT+TGG + chr1.4:51783952-51783971 None:intergenic 50.0%
CAACAGTGAGGGCGAGACAA+AGG - chr1.4:51784219-51784238 MS.gene47440:intron 55.0%
CTTTGTCTCGCCCTCACTGT+TGG + chr1.4:51784221-51784240 None:intergenic 55.0%
GGTGGTCCAAGATTGCTCGT+AGG - chr1.4:51783943-51783962 MS.gene47440:intron 55.0%
TGTGCAGGGCTTAGGAGAAG+TGG - chr1.4:51783086-51783105 MS.gene47440:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 51783065 51784465 51783065 ID=MS.gene47440
chr1.4 mRNA 51783065 51784465 51783065 ID=MS.gene47440.t1;Parent=MS.gene47440
chr1.4 exon 51784308 51784465 51784308 ID=MS.gene47440.t1.exon1;Parent=MS.gene47440.t1
chr1.4 CDS 51784308 51784465 51784308 ID=cds.MS.gene47440.t1;Parent=MS.gene47440.t1
chr1.4 exon 51783486 51783586 51783486 ID=MS.gene47440.t1.exon2;Parent=MS.gene47440.t1
chr1.4 CDS 51783486 51783586 51783486 ID=cds.MS.gene47440.t1;Parent=MS.gene47440.t1
chr1.4 exon 51783065 51783378 51783065 ID=MS.gene47440.t1.exon3;Parent=MS.gene47440.t1
chr1.4 CDS 51783065 51783378 51783065 ID=cds.MS.gene47440.t1;Parent=MS.gene47440.t1
Gene Sequence

>MS.gene47440

ATGGTAACATTTGTTTGCTATTGTGCAGGGCTTAGGAGAAGTGGTAAAAGCTGTAGGTTAAGGTGGTTGAACTATCTTCGTCCAAATCTCAAACATGGCCCTTTTAATGTTGAAGAGGAGAGACTTATAGTTCAACTTCAGCAGCAATGGGGTAACAAGTGAGTTTCTTCCCATGTTAGTAGTAACTAGTAACCATAAAATGTCTAAGCCTATGAAGTTGAAAAAATATAATATAGTATATAGTTGAATTTAATTAGTATGCATTGTCAATGTAAAAAAGAGAAAATTATACATACATCTAATTATATCTCATCACGTAAATAATACTCCATCCGTTTCAAAATGAGTGTCGTTTTAGGTGTTTACACACATATTAAGAAATACAATGATTAAAAGAAAGAGAATGATTATTTTACCAAATTATCCTTATTAACTATTGGTTAGTTTTCAAAGTAATACTTTGGAAGTAGTGTGCTGAGTATTAATTGGAGGGTACAATTGAAAAGAAAAAGTTATTATTGCATTGGAAACTGAAAGCGACATTCATTTTGAAACAAATTTTTTTGGCTAAAGCGACACTCATTTTGAAACGGATGGAGTACTAAGATATTGTAAGAACTAATGTTACAAAGGAATATAATGAGATATGATTCGATGCATGCAAAAAAAGTTACATTAACCGTGTATATTTATATTTTTTCAAAGAATATTGACGGTGCATATAAATTAAATATTAAATATGTGTAACATAATGAAATATATACTTTGTGTTTACAATGCTATGTGCTCCTAGTATAGATTGCTATAGATTATAATCTTTAATTATTTTTTGTCAATAAAAAAAAATTGTTAAATTTGTAACAATAACAATGAAAATAGGTGGTCCAAGATTGCTCGTAGGCTTCCAGGAAGAACAGACAATGAAATCAAGAATTATTGGAGAACTCATTTACAAAAGAGAGTACAAGTTCAACAAGAAGGTGACCTATTTGTGCTATTAATATCATATACATAATTGCTTGTGAAAATATTGCACATATTTTCCTTTTTTAATTCACACACACTTACATTTTTTTTTTATTCTCAGGTGAGTTCATGTATGAAGTAGAAAACCTAGCACATGATTCCAACAACAAAAGCATTGATGTGATTTCCAACAGTGAGGGCGAGACAAAGGAAAGCTCTGTAGACAGTTGTCCCTTATCAGATTGGGGAATGAGAAACTCACCTTATCATGAAAGTAGAATATCAGATTGGATAGAAGAATTGCAAAATGGATTTGGTGACAAGGAAAATGAATTAGGACAAGATTTTAATAGTATAAATGGATCAACGTATGAATATAATCCTCAAGAAGAATATGATACTTGGGATTATTCAGGTTTTCTATGGGACTTGTGA
Protein sequence

>MS.gene47440.t1

MVTFVCYCAGLRRSGKSCRLRWLNYLRPNLKHGPFNVEEERLIVQLQQQWGNKWSKIARRLPGRTDNEIKNYWRTHLQKRVQVQQEGEFMYEVENLAHDSNNKSIDVISNSEGETKESSVDSCPLSDWGMRNSPYHESRISDWIEELQNGFGDKENELGQDFNSINGSTYEYNPQEEYDTWDYSGFLWDL