Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47510.t1 | XP_003608058.1 | 95.6 | 273 | 10 | 2 | 45 | 317 | 49 | 319 | 2.80E-146 | 528.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47510.t1 | Q922M5 | 44.1 | 102 | 55 | 1 | 170 | 269 | 330 | 431 | 5.4e-21 | 103.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47510.t1 | G7JNK7 | 95.6 | 273 | 10 | 2 | 45 | 317 | 49 | 319 | 2.0e-146 | 528.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene47510 | 0.809489 | 1.85E-50 | -1.69E-46 |
| MS.gene051263 | MS.gene47510 | 0.80974 | 1.63E-50 | -1.69E-46 |
| MS.gene051629 | MS.gene47510 | 0.820092 | 8.23E-53 | -1.69E-46 |
| MS.gene055957 | MS.gene47510 | 0.801201 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47510.t1 | MTR_4g087240 | 92.384 | 302 | 20 | 3 | 17 | 317 | 20 | 319 | 0.0 | 556 |
| MS.gene47510.t1 | MTR_5g018400 | 50.617 | 243 | 108 | 3 | 43 | 280 | 29 | 264 | 3.29e-78 | 243 |
| MS.gene47510.t1 | MTR_5g018470 | 50.000 | 240 | 107 | 2 | 43 | 276 | 30 | 262 | 2.97e-69 | 221 |
| MS.gene47510.t1 | MTR_0024s0330 | 36.066 | 122 | 67 | 3 | 169 | 284 | 34 | 150 | 1.43e-16 | 80.9 |
| MS.gene47510.t1 | MTR_6g017265 | 33.088 | 136 | 74 | 4 | 169 | 292 | 43 | 173 | 6.54e-15 | 75.9 |
| MS.gene47510.t1 | MTR_6g070950 | 28.195 | 266 | 136 | 10 | 41 | 251 | 7 | 272 | 4.31e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47510.t1 | AT2G23530 | 49.796 | 245 | 97 | 5 | 43 | 275 | 29 | 259 | 1.06e-71 | 231 |
| MS.gene47510.t1 | AT4G37110 | 45.385 | 260 | 115 | 5 | 43 | 280 | 29 | 283 | 9.53e-69 | 220 |
| MS.gene47510.t1 | AT4G37110 | 47.773 | 247 | 115 | 5 | 43 | 280 | 29 | 270 | 4.52e-68 | 218 |
| MS.gene47510.t1 | AT4G37110 | 51.099 | 182 | 83 | 3 | 100 | 280 | 12 | 188 | 4.42e-61 | 197 |
| MS.gene47510.t1 | AT4G37110 | 51.099 | 182 | 83 | 3 | 100 | 280 | 12 | 188 | 4.42e-61 | 197 |
| MS.gene47510.t1 | AT1G67780 | 34.307 | 137 | 71 | 3 | 169 | 299 | 23 | 146 | 1.09e-16 | 80.9 |
| MS.gene47510.t1 | AT1G67780 | 34.307 | 137 | 71 | 3 | 169 | 299 | 23 | 146 | 1.09e-16 | 80.9 |
| MS.gene47510.t1 | AT5G38690 | 37.624 | 101 | 60 | 1 | 172 | 269 | 23 | 123 | 4.93e-14 | 73.2 |
| MS.gene47510.t1 | AT5G38690 | 37.624 | 101 | 60 | 1 | 172 | 269 | 23 | 123 | 4.93e-14 | 73.2 |
| MS.gene47510.t1 | AT1G67270 | 36.538 | 104 | 63 | 1 | 169 | 269 | 15 | 118 | 1.29e-13 | 71.6 |
Find 78 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTTGTTAAAGCTTTC+TGG | 0.081932 | 4.3:-25893465 | MS.gene47510:CDS |
| GGCGAAGGTGTTGTCGTTTC+AGG | 0.158440 | 4.3:-25893555 | MS.gene47510:CDS |
| CTGAAAGACGTTCTTCTTCT+AGG | 0.197268 | 4.3:-25893374 | MS.gene47510:intron |
| CTTTCTTGACGCTCTGCTTT+AGG | 0.267050 | 4.3:+25892467 | None:intergenic |
| ACTTCAGGGTTTGTGCCTTC+TGG | 0.274892 | 4.3:+25892404 | None:intergenic |
| TGCTCTTCAGTGTAAACTTC+AGG | 0.282121 | 4.3:+25892389 | None:intergenic |
| AGAGATCTCTGGTATTTCTT+TGG | 0.321827 | 4.3:+25890860 | None:intergenic |
| TGTTTGTAAGGTGACGAAAT+TGG | 0.331250 | 4.3:-25890967 | MS.gene47510:intron |
| TGACATTTCTCTCCCTTGAT+TGG | 0.343032 | 4.3:+25892284 | None:intergenic |
| ATCTCCACAAAGCCGTCCTT+GGG | 0.359404 | 4.3:+25891530 | None:intergenic |
| TACTGGTAATATATACAATA+AGG | 0.364939 | 4.3:-25891191 | MS.gene47510:intron |
| CCTTGATTGGATCATATATA+TGG | 0.370088 | 4.3:+25892297 | None:intergenic |
| GATTGGGAATTGTATGTAGA+TGG | 0.394321 | 4.3:-25892338 | MS.gene47510:CDS |
| GAATGGGAACTCGTCGTAGA+AGG | 0.402667 | 4.3:-25893653 | MS.gene47510:CDS |
| TAGGAGATTGTGAGACTGAT+TGG | 0.407394 | 4.3:-25892355 | MS.gene47510:CDS |
| GTCCTAGTCAGTGTTGAATC+TGG | 0.411891 | 4.3:+25890837 | None:intergenic |
| CGCTTGTCACAATAGTTAAC+TGG | 0.416480 | 4.3:+25892491 | None:intergenic |
| TTGACGGAGGGGCGCGGTGT+TGG | 0.424322 | 4.3:+25893426 | None:intergenic |
| AATCTCCACAAAGCCGTCCT+TGG | 0.429942 | 4.3:+25891529 | None:intergenic |
| CATCGCATTACGAACAGATT+CGG | 0.430803 | 4.3:-25893527 | MS.gene47510:CDS |
| AGAGCCCTTCTCGTCCGAAT+TGG | 0.433546 | 4.3:+25890804 | None:intergenic |
| GCTCTTCAGTGTAAACTTCA+GGG | 0.440452 | 4.3:+25892390 | None:intergenic |
| TAATTCACATTTGTTGCAAT+CGG | 0.441018 | 4.3:+25891554 | None:intergenic |
| ATCGCATTACGAACAGATTC+GGG | 0.446329 | 4.3:-25893526 | MS.gene47510:CDS |
| AGTCCACTTGGGATTGATGC+TGG | 0.452136 | 4.3:+25891276 | None:intergenic |
| CGCCACCACCGAAACCAAAA+CGG | 0.463153 | 4.3:-25893592 | MS.gene47510:CDS |
| AGAACGTCTTTCAGATTCGT+TGG | 0.472148 | 4.3:+25893383 | None:intergenic |
| AAAGTTCATCAAGTAAGAAA+AGG | 0.473277 | 4.3:-25892448 | MS.gene47510:CDS |
| GGACACTGAGTAGGCCAATT+CGG | 0.474533 | 4.3:-25890818 | MS.gene47510:CDS |
| CATGCTTTCCTCAGAGCGAC+GGG | 0.474902 | 4.3:+25890911 | None:intergenic |
| GAAGAATCAGCTTCTGAAGA+TGG | 0.476470 | 4.3:-25893618 | MS.gene47510:CDS |
| TTACCCCAAGGACGGCTTTG+TGG | 0.478556 | 4.3:-25891534 | MS.gene47510:CDS |
| GAGGAAAGCATGGAAGGATC+AGG | 0.480538 | 4.3:-25890900 | MS.gene47510:CDS |
| CGTCTTTCAGATTCGTTGGA+TGG | 0.488192 | 4.3:+25893387 | None:intergenic |
| CCATGCTTTCCTCAGAGCGA+CGG | 0.490576 | 4.3:+25890910 | None:intergenic |
| ACAAGAAGGGCAAGTCCACT+TGG | 0.490962 | 4.3:+25891264 | None:intergenic |
| GTTTGTAAGGTGACGAAATT+GGG | 0.490978 | 4.3:-25890966 | MS.gene47510:intron |
| GTTGAATCTGGAGAGATCTC+TGG | 0.493207 | 4.3:+25890849 | None:intergenic |
| TTGCAAATTTCTCGACAAGA+AGG | 0.509937 | 4.3:+25891250 | None:intergenic |
| CGCTCTGAGGAAAGCATGGA+AGG | 0.514423 | 4.3:-25890906 | MS.gene47510:CDS |
| AAGTAAGAAAAGGAAGGAAG+TGG | 0.520203 | 4.3:-25892438 | MS.gene47510:CDS |
| CCATATATATGATCCAATCA+AGG | 0.520783 | 4.3:-25892297 | MS.gene47510:CDS |
| TGCAAATTTCTCGACAAGAA+GGG | 0.527573 | 4.3:+25891251 | None:intergenic |
| GCTGAGAGAATGCATAAGCT+TGG | 0.545658 | 4.3:-25893483 | MS.gene47510:CDS |
| TAGATGGATATGATGAGGAT+GGG | 0.547781 | 4.3:-25892322 | MS.gene47510:CDS |
| GTAGATGGATATGATGAGGA+TGG | 0.552923 | 4.3:-25892323 | MS.gene47510:CDS |
| GTAGGCCAATTCGGACGAGA+AGG | 0.559902 | 4.3:-25890809 | MS.gene47510:CDS |
| AGGAGATTGTGAGACTGATT+GGG | 0.560044 | 4.3:-25892354 | MS.gene47510:CDS |
| GAGAGAAATGTCATCAATGC+GGG | 0.565621 | 4.3:-25892274 | MS.gene47510:intron |
| CACAATAGTTAACTGGTGGT+AGG | 0.567871 | 4.3:+25892498 | None:intergenic |
| CCGTCGCTCTGAGGAAAGCA+TGG | 0.568211 | 4.3:-25890910 | MS.gene47510:CDS |
| CTCCAGATTCAACACTGACT+AGG | 0.570452 | 4.3:-25890839 | MS.gene47510:CDS |
| ACAATAGTTAACTGGTGGTA+GGG | 0.571951 | 4.3:+25892499 | None:intergenic |
| GAAGAGCATGAGAAGCTGCT+AGG | 0.582500 | 4.3:-25892374 | MS.gene47510:CDS |
| TTCATCAAGTAAGAAAAGGA+AGG | 0.585443 | 4.3:-25892444 | MS.gene47510:CDS |
| ACCAAAACGGCGAAAACTGA+CGG | 0.586728 | 4.3:-25893579 | MS.gene47510:CDS |
| AATAATGTTACCTTGTGTAG+AGG | 0.592456 | 4.3:+25891505 | None:intergenic |
| TAGGCCAATTCGGACGAGAA+GGG | 0.596764 | 4.3:-25890808 | MS.gene47510:CDS |
| GCGAAAACTGACGGTGGCGA+AGG | 0.600024 | 4.3:-25893570 | MS.gene47510:CDS |
| ACGAACAGATTCGGGAACAA+AGG | 0.601062 | 4.3:-25893518 | MS.gene47510:CDS |
| GTGGAGATTGCCTCTACACA+AGG | 0.601803 | 4.3:-25891515 | MS.gene47510:intron |
| GTGGAAATTCATATACCAGA+AGG | 0.609129 | 4.3:-25892419 | MS.gene47510:CDS |
| CATATATATGATCCAATCAA+GGG | 0.618648 | 4.3:-25892296 | MS.gene47510:CDS |
| CAAGAAGGGCAAGTCCACTT+GGG | 0.625978 | 4.3:+25891265 | None:intergenic |
| AGATTCGTTGGATGGTAACG+AGG | 0.637828 | 4.3:+25893395 | None:intergenic |
| GATTAAGACCCGTCGCTCTG+AGG | 0.643030 | 4.3:-25890919 | MS.gene47510:CDS |
| GCAACTGCAATAGCTGCCGT+AGG | 0.655636 | 4.3:-25891231 | MS.gene47510:CDS |
| AGATGGATATGATGAGGATG+GGG | 0.664541 | 4.3:-25892321 | MS.gene47510:CDS |
| AATGTGAATTACCCCAAGGA+CGG | 0.664710 | 4.3:-25891542 | MS.gene47510:CDS |
| AAGCCAGCATCAATCCCAAG+TGG | 0.668388 | 4.3:-25891279 | MS.gene47510:CDS |
| GAATCAGCTTCTGAAGATGG+CGG | 0.676548 | 4.3:-25893615 | MS.gene47510:CDS |
| AACAAATGTGAATTACCCCA+AGG | 0.685873 | 4.3:-25891546 | MS.gene47510:CDS |
| TTGTCACAATAGTTAACTGG+TGG | 0.697560 | 4.3:+25892494 | None:intergenic |
| TCTCCACAAAGCCGTCCTTG+GGG | 0.703752 | 4.3:+25891531 | None:intergenic |
| GGAGAGAAATGTCATCAATG+CGG | 0.712891 | 4.3:-25892275 | MS.gene47510:CDS |
| CACTGACTAGGACACTGAGT+AGG | 0.718098 | 4.3:-25890827 | MS.gene47510:CDS |
| AAAACGGCGAAAACTGACGG+TGG | 0.727491 | 4.3:-25893576 | MS.gene47510:CDS |
| GTATGTAGATGGATATGATG+AGG | 0.739576 | 4.3:-25892327 | MS.gene47510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTATGTTTGAT+TGG | - | chr4.3:25891908-25891927 | MS.gene47510:intron | 10.0% |
| !!! | GTAAATTTTATGTATTAATT+AGG | - | chr4.3:25891271-25891290 | MS.gene47510:CDS | 10.0% |
| !! | AAATTCAATATAAAACATCA+TGG | - | chr4.3:25892484-25892503 | MS.gene47510:CDS | 15.0% |
| !! | ATATTCTATTTAACTAAACA+TGG | - | chr4.3:25892399-25892418 | MS.gene47510:CDS | 15.0% |
| !! | TATTCTATTTAACTAAACAT+GGG | - | chr4.3:25892400-25892419 | MS.gene47510:CDS | 15.0% |
| !!! | AAAATCATTTGTTTTCTTTT+AGG | - | chr4.3:25892846-25892865 | MS.gene47510:intron | 15.0% |
| !!! | ATGATGTTTTATATTGAATT+TGG | + | chr4.3:25892485-25892504 | None:intergenic | 15.0% |
| !!! | GTTTATCTATTTATTGATTA+TGG | - | chr4.3:25891249-25891268 | MS.gene47510:CDS | 15.0% |
| !! | CCAATAATAGTTAGAAAAAA+TGG | + | chr4.3:25891659-25891678 | None:intergenic | 20.0% |
| !! | CTATCAATTGAAAATCATAT+CGG | + | chr4.3:25891515-25891534 | None:intergenic | 20.0% |
| !! | CTATGATATATATATATGGT+TGG | - | chr4.3:25891865-25891884 | MS.gene47510:intron | 20.0% |
| !! | TACTGGTAATATATACAATA+AGG | - | chr4.3:25893254-25893273 | MS.gene47510:intron | 20.0% |
| !! | TATACTTGTCATGTATTAAA+TGG | + | chr4.3:25893062-25893081 | None:intergenic | 20.0% |
| !! | TATGATATGATAGAACATTA+CGG | - | chr4.3:25891778-25891797 | MS.gene47510:intron | 20.0% |
| !! | TCAACTAATAAACATATGTT+TGG | + | chr4.3:25891440-25891459 | None:intergenic | 20.0% |
| !! | TGAGCTATGATATATATATA+TGG | - | chr4.3:25891861-25891880 | MS.gene47510:intron | 20.0% |
| !! | TTCTATCATATCATATACTA+AGG | + | chr4.3:25891773-25891792 | None:intergenic | 20.0% |
| !!! | AAACTTCATTATGTAGTTTT+CGG | + | chr4.3:25891361-25891380 | None:intergenic | 20.0% |
| !!! | AAGTTGTAATAACTTGTAAT+GGG | - | chr4.3:25892530-25892549 | MS.gene47510:intron | 20.0% |
| !!! | CCATTTTTTCTAACTATTAT+TGG | - | chr4.3:25891656-25891675 | MS.gene47510:intron | 20.0% |
| !!! | TAAGTTGTAATAACTTGTAA+TGG | - | chr4.3:25892529-25892548 | MS.gene47510:intron | 20.0% |
| ! | AAAGTTCATCAAGTAAGAAA+AGG | - | chr4.3:25891997-25892016 | MS.gene47510:intron | 25.0% |
| ! | CAAAGAAAAATGAAGGAAAA+AGG | + | chr4.3:25893392-25893411 | None:intergenic | 25.0% |
| ! | CATATATATGATCCAATCAA+GGG | - | chr4.3:25892149-25892168 | MS.gene47510:intron | 25.0% |
| ! | TCCCATTAAAAAATTGGTTA+TGG | + | chr4.3:25892595-25892614 | None:intergenic | 25.0% |
| ! | TTTAGATTCAGATTGAGAAA+AGG | - | chr4.3:25892967-25892986 | MS.gene47510:intron | 25.0% |
| !! | AGTTGTAATAACTTGTAATG+GGG | - | chr4.3:25892531-25892550 | MS.gene47510:intron | 25.0% |
| !! | ATTTTCTACTTCTGTATTCT+AGG | - | chr4.3:25893124-25893143 | MS.gene47510:intron | 25.0% |
| !! | CGATATGATTTTCAATTGAT+AGG | - | chr4.3:25891513-25891532 | MS.gene47510:intron | 25.0% |
| !! | TAATTCACATTTGTTGCAAT+CGG | + | chr4.3:25892894-25892913 | None:intergenic | 25.0% |
| !! | TTCGGATAACCAAAATTTTA+GGG | + | chr4.3:25891343-25891362 | None:intergenic | 25.0% |
| !! | TTTCGGATAACCAAAATTTT+AGG | + | chr4.3:25891344-25891363 | None:intergenic | 25.0% |
| !! | TTTGGAAAACCCTAAAATTT+TGG | - | chr4.3:25891331-25891350 | MS.gene47510:intron | 25.0% |
| !! | TTTTTCTTTGTCATGTGATT+TGG | - | chr4.3:25893402-25893421 | MS.gene47510:CDS | 25.0% |
| !!! | GCCATAACCAATTTTTTAAT+GGG | - | chr4.3:25892591-25892610 | MS.gene47510:intron | 25.0% |
| !!! | TGCCATAACCAATTTTTTAA+TGG | - | chr4.3:25892590-25892609 | MS.gene47510:intron | 25.0% |
| AAACATGTTACCATTAAGTG+TGG | + | chr4.3:25891827-25891846 | None:intergenic | 30.0% | |
| AATAATGTTACCTTGTGTAG+AGG | + | chr4.3:25892943-25892962 | None:intergenic | 30.0% | |
| ACAAATCTGATGAAATTGTG+CGG | - | chr4.3:25891467-25891486 | MS.gene47510:intron | 30.0% | |
| AGAAGATAGAACTGAATAGA+AGG | + | chr4.3:25893313-25893332 | None:intergenic | 30.0% | |
| ATCTCGTTAATGCATAAAGT+TGG | - | chr4.3:25892769-25892788 | MS.gene47510:intron | 30.0% | |
| CACATGACAAAGAAAAATGA+AGG | + | chr4.3:25893399-25893418 | None:intergenic | 30.0% | |
| CCATATATATGATCCAATCA+AGG | - | chr4.3:25892148-25892167 | MS.gene47510:intron | 30.0% | |
| CCTTGATTGGATCATATATA+TGG | + | chr4.3:25892151-25892170 | None:intergenic | 30.0% | |
| CTAAAAACCCTTCAATTCAT+AGG | + | chr4.3:25892258-25892277 | None:intergenic | 30.0% | |
| GAAGATAGAACTGAATAGAA+GGG | + | chr4.3:25893312-25893331 | None:intergenic | 30.0% | |
| TAGCACTATTTATTGCTTGT+TGG | - | chr4.3:25891148-25891167 | MS.gene47510:intron | 30.0% | |
| TCACATACACTTCAGATTAA+AGG | + | chr4.3:25891207-25891226 | None:intergenic | 30.0% | |
| TCAGAGAAACAAGTAACATA+TGG | + | chr4.3:25892808-25892827 | None:intergenic | 30.0% | |
| TGACATGTTTGTGTTATGTT+TGG | - | chr4.3:25891682-25891701 | MS.gene47510:intron | 30.0% | |
| TTCATCAAGTAAGAAAAGGA+AGG | - | chr4.3:25892001-25892020 | MS.gene47510:intron | 30.0% | |
| TTTCGCTTCACATTCTTTAA+AGG | - | chr4.3:25893364-25893383 | MS.gene47510:intron | 30.0% | |
| ! | GTTGTAATAACTTGTAATGG+GGG | - | chr4.3:25892532-25892551 | MS.gene47510:intron | 30.0% |
| ! | TACCTTAGTAGAACAGTTTT+AGG | - | chr4.3:25892719-25892738 | MS.gene47510:intron | 30.0% |
| ! | TATACAATAAGGTTAGTCAC+AGG | - | chr4.3:25893265-25893284 | MS.gene47510:intron | 30.0% |
| ! | TGTTTCAGAATAAAGTGTCA+TGG | + | chr4.3:25892293-25892312 | None:intergenic | 30.0% |
| ! | TTACTAGTTTGCCAAAAGAA+AGG | - | chr4.3:25892365-25892384 | MS.gene47510:CDS | 30.0% |
| !! | TGACACTTTATTCTGAAACA+AGG | - | chr4.3:25892293-25892312 | MS.gene47510:CDS | 30.0% |
| !!! | TTGGTTCTATGCTTTTTAAG+TGG | - | chr4.3:25892693-25892712 | MS.gene47510:intron | 30.0% |
| AAAAATGGTTGGATGCATAC+TGG | - | chr4.3:25893237-25893256 | MS.gene47510:intron | 35.0% | |
| AACAAATGTGAATTACCCCA+AGG | - | chr4.3:25892899-25892918 | MS.gene47510:intron | 35.0% | |
| AAGTAAGAAAAGGAAGGAAG+TGG | - | chr4.3:25892007-25892026 | MS.gene47510:intron | 35.0% | |
| ACAATAGTTAACTGGTGGTA+GGG | + | chr4.3:25891949-25891968 | None:intergenic | 35.0% | |
| AGAGATCTCTGGTATTTCTT+TGG | + | chr4.3:25893588-25893607 | None:intergenic | 35.0% | |
| ATGGGTGATATAAGATGCAA+CGG | - | chr4.3:25892418-25892437 | MS.gene47510:CDS | 35.0% | |
| ATGTTACCATTAAGTGTGGT+CGG | + | chr4.3:25891823-25891842 | None:intergenic | 35.0% | |
| CAAATCTGATGAAATTGTGC+GGG | - | chr4.3:25891468-25891487 | MS.gene47510:intron | 35.0% | |
| CATAGAACCAATGTTGTCTA+TGG | + | chr4.3:25892684-25892703 | None:intergenic | 35.0% | |
| CCTTACAAACACAGATGAAA+AGG | + | chr4.3:25893469-25893488 | None:intergenic | 35.0% | |
| CTACTTCTGTATTCTAGGTA+TGG | - | chr4.3:25893129-25893148 | MS.gene47510:intron | 35.0% | |
| GATTGGGAATTGTATGTAGA+TGG | - | chr4.3:25892107-25892126 | MS.gene47510:intron | 35.0% | |
| GTATGTAGATGGATATGATG+AGG | - | chr4.3:25892118-25892137 | MS.gene47510:intron | 35.0% | |
| GTCTGATGAAATCATGTGTT+TGG | - | chr4.3:25891313-25891332 | MS.gene47510:intron | 35.0% | |
| GTGGAAATTCATATACCAGA+AGG | - | chr4.3:25892026-25892045 | MS.gene47510:intron | 35.0% | |
| GTTTGCCAAAAGAAAGGAAA+AGG | - | chr4.3:25892371-25892390 | MS.gene47510:CDS | 35.0% | |
| GTTTGTAAGGTGACGAAATT+GGG | - | chr4.3:25893479-25893498 | MS.gene47510:CDS | 35.0% | |
| TAAATGGAGTTAACTCATCG+AGG | + | chr4.3:25893046-25893065 | None:intergenic | 35.0% | |
| TAGATGGATATGATGAGGAT+GGG | - | chr4.3:25892123-25892142 | MS.gene47510:intron | 35.0% | |
| TGCAAATTTCTCGACAAGAA+GGG | + | chr4.3:25893197-25893216 | None:intergenic | 35.0% | |
| TGCCTAAAACTGTTCTACTA+AGG | + | chr4.3:25892724-25892743 | None:intergenic | 35.0% | |
| TGTTTGTAAGGTGACGAAAT+TGG | - | chr4.3:25893478-25893497 | MS.gene47510:CDS | 35.0% | |
| TTGCAAATTTCTCGACAAGA+AGG | + | chr4.3:25893198-25893217 | None:intergenic | 35.0% | |
| TTGTCACAATAGTTAACTGG+TGG | + | chr4.3:25891954-25891973 | None:intergenic | 35.0% | |
| ! | CCTTTTCATCTGTGTTTGTA+AGG | - | chr4.3:25893466-25893485 | MS.gene47510:CDS | 35.0% |
| ! | CTTTGTCATGTGATTTGGAA+TGG | - | chr4.3:25893407-25893426 | MS.gene47510:CDS | 35.0% |
| ! | GCTTTCCTTTTCCTTTCTTT+TGG | + | chr4.3:25892379-25892398 | None:intergenic | 35.0% |
| ! | TAACGAGGAGTTTTTCTTGA+CGG | + | chr4.3:25891038-25891057 | None:intergenic | 35.0% |
| !! | CTTGGTTTGTTAAAGCTTTC+TGG | - | chr4.3:25890980-25890999 | MS.gene47510:intron | 35.0% |
| AAACCATATAAGCACACCAG+TGG | + | chr4.3:25892641-25892660 | None:intergenic | 40.0% | |
| AACCCTTCAATTCATAGGAG+AGG | + | chr4.3:25892253-25892272 | None:intergenic | 40.0% | |
| AATAGCTGCCGTAGGAAAAA+TGG | - | chr4.3:25893222-25893241 | MS.gene47510:intron | 40.0% | |
| AATGATTGAATGTAGCCACG+TGG | + | chr4.3:25891636-25891655 | None:intergenic | 40.0% | |
| AATGTGAATTACCCCAAGGA+CGG | - | chr4.3:25892903-25892922 | MS.gene47510:intron | 40.0% | |
| ACCCTTCAATTCATAGGAGA+GGG | + | chr4.3:25892252-25892271 | None:intergenic | 40.0% | |
| AGAACCAATGTTGTCTATGG+TGG | + | chr4.3:25892681-25892700 | None:intergenic | 40.0% | |
| AGAACGTCTTTCAGATTCGT+TGG | + | chr4.3:25891065-25891084 | None:intergenic | 40.0% | |
| AGATGGATATGATGAGGATG+GGG | - | chr4.3:25892124-25892143 | MS.gene47510:intron | 40.0% | |
| AGGAGATTGTGAGACTGATT+GGG | - | chr4.3:25892091-25892110 | MS.gene47510:intron | 40.0% | |
| ATCGCATTACGAACAGATTC+GGG | - | chr4.3:25890919-25890938 | MS.gene47510:CDS | 40.0% | |
| ATGATTGAATGTAGCCACGT+GGG | + | chr4.3:25891635-25891654 | None:intergenic | 40.0% | |
| CACAATAGTTAACTGGTGGT+AGG | + | chr4.3:25891950-25891969 | None:intergenic | 40.0% | |
| CAGTTCTATCTTCTTCAGTG+TGG | - | chr4.3:25893319-25893338 | MS.gene47510:intron | 40.0% | |
| CATCGCATTACGAACAGATT+CGG | - | chr4.3:25890918-25890937 | MS.gene47510:CDS | 40.0% | |
| CGCTTGTCACAATAGTTAAC+TGG | + | chr4.3:25891957-25891976 | None:intergenic | 40.0% | |
| CGGGCATCCCATTAAAAAAT+TGG | + | chr4.3:25892601-25892620 | None:intergenic | 40.0% | |
| CTGAAAGACGTTCTTCTTCT+AGG | - | chr4.3:25891071-25891090 | MS.gene47510:intron | 40.0% | |
| GAGAGAAATGTCATCAATGC+GGG | - | chr4.3:25892171-25892190 | MS.gene47510:intron | 40.0% | |
| GCTCTTCAGTGTAAACTTCA+GGG | + | chr4.3:25892058-25892077 | None:intergenic | 40.0% | |
| GGAGAGAAATGTCATCAATG+CGG | - | chr4.3:25892170-25892189 | MS.gene47510:intron | 40.0% | |
| GTAGATGGATATGATGAGGA+TGG | - | chr4.3:25892122-25892141 | MS.gene47510:intron | 40.0% | |
| TAGGAGATTGTGAGACTGAT+TGG | - | chr4.3:25892090-25892109 | MS.gene47510:intron | 40.0% | |
| TCGGTCTCACTAAATGTATG+AGG | + | chr4.3:25891496-25891515 | None:intergenic | 40.0% | |
| TGACATTTCTCTCCCTTGAT+TGG | + | chr4.3:25892164-25892183 | None:intergenic | 40.0% | |
| TGCTCTTCAGTGTAAACTTC+AGG | + | chr4.3:25892059-25892078 | None:intergenic | 40.0% | |
| TGGAATGGAAGGCTAAGATA+TGG | - | chr4.3:25893422-25893441 | MS.gene47510:CDS | 40.0% | |
| TGGGTGATATAAGATGCAAC+GGG | - | chr4.3:25892419-25892438 | MS.gene47510:CDS | 40.0% | |
| TGTCATCAATGCGGGTATTA+TGG | - | chr4.3:25892179-25892198 | MS.gene47510:intron | 40.0% | |
| ! | GAAGAATCAGCTTCTGAAGA+TGG | - | chr4.3:25890827-25890846 | MS.gene47510:CDS | 40.0% |
| ! | GTCATGTGATTTGGAATGGA+AGG | - | chr4.3:25893411-25893430 | MS.gene47510:CDS | 40.0% |
| ! | GTGAAGTGTCAGTACTATCA+GGG | + | chr4.3:25891576-25891595 | None:intergenic | 40.0% |
| ! | TCTTTTAGGCGCTTAACTGT+TGG | - | chr4.3:25892860-25892879 | MS.gene47510:intron | 40.0% |
| ! | TGTGAAGTGTCAGTACTATC+AGG | + | chr4.3:25891577-25891596 | None:intergenic | 40.0% |
| !! | GCATCCAACCATTTTTCCTA+CGG | + | chr4.3:25893233-25893252 | None:intergenic | 40.0% |
| !!! | AGTTTTCGCCGTTTTGGTTT+CGG | + | chr4.3:25890864-25890883 | None:intergenic | 40.0% |
| !!! | ATGGCTTGGTGGATTTTAAG+AGG | - | chr4.3:25892453-25892472 | MS.gene47510:CDS | 40.0% |
| !!! | TGGTGGATTTTAAGAGGAGA+TGG | - | chr4.3:25892459-25892478 | MS.gene47510:CDS | 40.0% |
| ACCAAAACGGCGAAAACTGA+CGG | - | chr4.3:25890866-25890885 | MS.gene47510:CDS | 45.0% | |
| ACGAACAGATTCGGGAACAA+AGG | - | chr4.3:25890927-25890946 | MS.gene47510:CDS | 45.0% | |
| ATGTAGCCGACCACACTTAA+TGG | - | chr4.3:25891814-25891833 | MS.gene47510:intron | 45.0% | |
| CCTTCCACCATAGACAACAT+TGG | - | chr4.3:25892674-25892693 | MS.gene47510:intron | 45.0% | |
| CGTCTTTCAGATTCGTTGGA+TGG | + | chr4.3:25891061-25891080 | None:intergenic | 45.0% | |
| CTTTCTTGACGCTCTGCTTT+AGG | + | chr4.3:25891981-25892000 | None:intergenic | 45.0% | |
| GCCCTCTCCTATGAATTGAA+GGG | - | chr4.3:25892248-25892267 | MS.gene47510:intron | 45.0% | |
| GCTGAGAGAATGCATAAGCT+TGG | - | chr4.3:25890962-25890981 | MS.gene47510:intron | 45.0% | |
| GGGTGATATAAGATGCAACG+GGG | - | chr4.3:25892420-25892439 | MS.gene47510:CDS | 45.0% | |
| GGTGATATAAGATGCAACGG+GGG | - | chr4.3:25892421-25892440 | MS.gene47510:CDS | 45.0% | |
| GTTGAATCTGGAGAGATCTC+TGG | + | chr4.3:25893599-25893618 | None:intergenic | 45.0% | |
| TGCCCTCTCCTATGAATTGA+AGG | - | chr4.3:25892247-25892266 | MS.gene47510:intron | 45.0% | |
| ! | AGATTCGTTGGATGGTAACG+AGG | + | chr4.3:25891053-25891072 | None:intergenic | 45.0% |
| ! | AGGAGTTTTTCTTGACGGAG+GGG | + | chr4.3:25891033-25891052 | None:intergenic | 45.0% |
| ! | CCAATGTTGTCTATGGTGGA+AGG | + | chr4.3:25892677-25892696 | None:intergenic | 45.0% |
| ! | CTCCAGATTCAACACTGACT+AGG | - | chr4.3:25893606-25893625 | MS.gene47510:CDS | 45.0% |
| ! | GAATCAGCTTCTGAAGATGG+CGG | - | chr4.3:25890830-25890849 | MS.gene47510:CDS | 45.0% |
| ! | GAGGAGTTTTTCTTGACGGA+GGG | + | chr4.3:25891034-25891053 | None:intergenic | 45.0% |
| ! | GTCCTAGTCAGTGTTGAATC+TGG | + | chr4.3:25893611-25893630 | None:intergenic | 45.0% |
| AAAACGGCGAAAACTGACGG+TGG | - | chr4.3:25890869-25890888 | MS.gene47510:CDS | 50.0% | |
| AAGCCAGCATCAATCCCAAG+TGG | - | chr4.3:25893166-25893185 | MS.gene47510:intron | 50.0% | |
| AATCTCCACAAAGCCGTCCT+TGG | + | chr4.3:25892919-25892938 | None:intergenic | 50.0% | |
| ACAAGAAGGGCAAGTCCACT+TGG | + | chr4.3:25893184-25893203 | None:intergenic | 50.0% | |
| ACTTCAGGGTTTGTGCCTTC+TGG | + | chr4.3:25892044-25892063 | None:intergenic | 50.0% | |
| AGTCCACTTGGGATTGATGC+TGG | + | chr4.3:25893172-25893191 | None:intergenic | 50.0% | |
| ATCTCCACAAAGCCGTCCTT+GGG | + | chr4.3:25892918-25892937 | None:intergenic | 50.0% | |
| CAAGAAGGGCAAGTCCACTT+GGG | + | chr4.3:25893183-25893202 | None:intergenic | 50.0% | |
| CCACCACTGGTGTGCTTATA+TGG | - | chr4.3:25892635-25892654 | MS.gene47510:intron | 50.0% | |
| CCATATAAGCACACCAGTGG+TGG | + | chr4.3:25892638-25892657 | None:intergenic | 50.0% | |
| GCTGCCGTAGGAAAAATGGT+TGG | - | chr4.3:25893226-25893245 | MS.gene47510:intron | 50.0% | |
| GGACACTGAGTAGGCCAATT+CGG | - | chr4.3:25893627-25893646 | MS.gene47510:CDS | 50.0% | |
| GTGGAGATTGCCTCTACACA+AGG | - | chr4.3:25892930-25892949 | MS.gene47510:intron | 50.0% | |
| TAGGCCAATTCGGACGAGAA+GGG | - | chr4.3:25893637-25893656 | MS.gene47510:CDS | 50.0% | |
| TTGAATGTAGCCACGTGGGT+TGG | + | chr4.3:25891631-25891650 | None:intergenic | 50.0% | |
| ! | ACCGTCAGTTTTCGCCGTTT+TGG | + | chr4.3:25890870-25890889 | None:intergenic | 50.0% |
| ! | CACTGACTAGGACACTGAGT+AGG | - | chr4.3:25893618-25893637 | MS.gene47510:CDS | 50.0% |
| ! | CGAGGAGTTTTTCTTGACGG+AGG | + | chr4.3:25891035-25891054 | None:intergenic | 50.0% |
| ! | GAAGAGCATGAGAAGCTGCT+AGG | - | chr4.3:25892071-25892090 | MS.gene47510:intron | 50.0% |
| ! | GAGGAAAGCATGGAAGGATC+AGG | - | chr4.3:25893545-25893564 | MS.gene47510:CDS | 50.0% |
| ! | GTAATGGGGGCATGACAGAA+TGG | - | chr4.3:25892545-25892564 | MS.gene47510:intron | 50.0% |
| !!! | GCGGTGTTGGTGTTTTCTTG+AGG | + | chr4.3:25891009-25891028 | None:intergenic | 50.0% |
| !!! | TTTCGCCGTTTTGGTTTCGG+TGG | + | chr4.3:25890861-25890880 | None:intergenic | 50.0% |
| AGAGCCCTTCTCGTCCGAAT+TGG | + | chr4.3:25893644-25893663 | None:intergenic | 55.0% | |
| CATGCTTTCCTCAGAGCGAC+GGG | + | chr4.3:25893537-25893556 | None:intergenic | 55.0% | |
| CCATGCTTTCCTCAGAGCGA+CGG | + | chr4.3:25893538-25893557 | None:intergenic | 55.0% | |
| CGCCACCACCGAAACCAAAA+CGG | - | chr4.3:25890853-25890872 | MS.gene47510:CDS | 55.0% | |
| GACATTGACACCAACCCACG+TGG | - | chr4.3:25891618-25891637 | MS.gene47510:intron | 55.0% | |
| GATTAAGACCCGTCGCTCTG+AGG | - | chr4.3:25893526-25893545 | MS.gene47510:CDS | 55.0% | |
| GCAACTGCAATAGCTGCCGT+AGG | - | chr4.3:25893214-25893233 | MS.gene47510:intron | 55.0% | |
| GTAGGCCAATTCGGACGAGA+AGG | - | chr4.3:25893636-25893655 | MS.gene47510:CDS | 55.0% | |
| TCTCCACAAAGCCGTCCTTG+GGG | + | chr4.3:25892917-25892936 | None:intergenic | 55.0% | |
| TTACCCCAAGGACGGCTTTG+TGG | - | chr4.3:25892911-25892930 | MS.gene47510:intron | 55.0% | |
| ! | GGCATGACAGAATGGCTTGG+TGG | - | chr4.3:25892442-25892461 | MS.gene47510:CDS | 55.0% |
| ! | TTTTTCTTGACGGAGGGGCG+CGG | + | chr4.3:25891028-25891047 | None:intergenic | 55.0% |
| !! | CGCTCTGAGGAAAGCATGGA+AGG | - | chr4.3:25893539-25893558 | MS.gene47510:CDS | 55.0% |
| !! | GGCGAAGGTGTTGTCGTTTC+AGG | - | chr4.3:25890890-25890909 | MS.gene47510:CDS | 55.0% |
| GCGAAAACTGACGGTGGCGA+AGG | - | chr4.3:25890875-25890894 | MS.gene47510:CDS | 60.0% | |
| TAATGGGATGCCCGCCGTCA+TGG | - | chr4.3:25892607-25892626 | MS.gene47510:intron | 60.0% | |
| ! | GCAACGGGGGCATGACAGAA+TGG | - | chr4.3:25892434-25892453 | MS.gene47510:CDS | 60.0% |
| ! | GGGGGCATGACAGAATGGCT+TGG | - | chr4.3:25892439-25892458 | MS.gene47510:CDS | 60.0% |
| !! | CCGTCGCTCTGAGGAAAGCA+TGG | - | chr4.3:25893535-25893554 | MS.gene47510:CDS | 60.0% |
| !!! | CGCCGTTTTGGTTTCGGTGG+TGG | + | chr4.3:25890858-25890877 | None:intergenic | 60.0% |
| !! | CAGTGGTGGTGCCGCCATGA+CGG | + | chr4.3:25892624-25892643 | None:intergenic | 65.0% |
| CGTCATGGCGGCACCACCAC+TGG | - | chr4.3:25892622-25892641 | MS.gene47510:intron | 70.0% | |
| TGGGATGCCCGCCGTCATGG+CGG | - | chr4.3:25892610-25892629 | MS.gene47510:intron | 70.0% | |
| ! | TTGACGGAGGGGCGCGGTGT+TGG | + | chr4.3:25891022-25891041 | None:intergenic | 70.0% |
| !! | TGGTGGTGCCGCCATGACGG+CGG | + | chr4.3:25892621-25892640 | None:intergenic | 70.0% |
| !! | GGTGGTGCCGCCATGACGGC+GGG | + | chr4.3:25892620-25892639 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 25890794 | 25893673 | 25890794 | ID=MS.gene47510 |
| chr4.3 | mRNA | 25890794 | 25893673 | 25890794 | ID=MS.gene47510.t1;Parent=MS.gene47510 |
| chr4.3 | exon | 25893375 | 25893673 | 25893375 | ID=MS.gene47510.t1.exon1;Parent=MS.gene47510.t1 |
| chr4.3 | CDS | 25893375 | 25893673 | 25893375 | ID=cds.MS.gene47510.t1;Parent=MS.gene47510.t1 |
| chr4.3 | exon | 25892275 | 25892529 | 25892275 | ID=MS.gene47510.t1.exon2;Parent=MS.gene47510.t1 |
| chr4.3 | CDS | 25892275 | 25892529 | 25892275 | ID=cds.MS.gene47510.t1;Parent=MS.gene47510.t1 |
| chr4.3 | exon | 25891516 | 25891599 | 25891516 | ID=MS.gene47510.t1.exon3;Parent=MS.gene47510.t1 |
| chr4.3 | CDS | 25891516 | 25891599 | 25891516 | ID=cds.MS.gene47510.t1;Parent=MS.gene47510.t1 |
| chr4.3 | exon | 25891192 | 25891321 | 25891192 | ID=MS.gene47510.t1.exon4;Parent=MS.gene47510.t1 |
| chr4.3 | CDS | 25891192 | 25891321 | 25891192 | ID=cds.MS.gene47510.t1;Parent=MS.gene47510.t1 |
| chr4.3 | exon | 25890794 | 25890979 | 25890794 | ID=MS.gene47510.t1.exon5;Parent=MS.gene47510.t1 |
| chr4.3 | CDS | 25890794 | 25890979 | 25890794 | ID=cds.MS.gene47510.t1;Parent=MS.gene47510.t1 |
| Gene Sequence |
| Protein sequence |
