Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47600.t1 | XP_013460953.1 | 97.7 | 129 | 3 | 0 | 1 | 129 | 383 | 511 | 4.40E-45 | 190.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47600.t1 | Q9STM4 | 61.3 | 62 | 23 | 1 | 2 | 62 | 326 | 387 | 2.3e-18 | 93.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47600.t1 | G8A2H7 | 97.7 | 129 | 3 | 0 | 1 | 129 | 383 | 511 | 3.1e-45 | 190.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene47600.t1 | TF | C3H |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052610 | MS.gene47600 | 0.825663 | 4.14E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47600.t1 | MTR_3g075190 | 96.899 | 129 | 4 | 0 | 1 | 129 | 383 | 511 | 9.07e-90 | 269 |
MS.gene47600.t1 | MTR_3g075190 | 34.951 | 103 | 63 | 1 | 7 | 109 | 207 | 305 | 1.31e-16 | 75.1 |
MS.gene47600.t1 | MTR_3g075190 | 39.130 | 92 | 55 | 1 | 2 | 92 | 155 | 246 | 8.63e-16 | 72.8 |
MS.gene47600.t1 | MTR_4g104260 | 71.538 | 130 | 35 | 2 | 1 | 129 | 441 | 569 | 2.46e-61 | 197 |
MS.gene47600.t1 | MTR_4g104260 | 37.500 | 112 | 65 | 2 | 9 | 120 | 271 | 377 | 3.28e-16 | 73.9 |
MS.gene47600.t1 | MTR_4g104260 | 41.860 | 86 | 47 | 2 | 17 | 99 | 230 | 315 | 1.00e-14 | 69.7 |
MS.gene47600.t1 | MTR_7g079840 | 45.833 | 120 | 57 | 1 | 18 | 129 | 265 | 384 | 1.63e-33 | 120 |
MS.gene47600.t1 | MTR_7g079840 | 51.948 | 77 | 37 | 0 | 17 | 93 | 61 | 137 | 5.85e-22 | 89.7 |
MS.gene47600.t1 | MTR_7g079840 | 42.105 | 76 | 43 | 1 | 18 | 93 | 17 | 91 | 7.47e-17 | 75.5 |
MS.gene47600.t1 | MTR_7g079840 | 45.833 | 120 | 57 | 1 | 18 | 129 | 275 | 394 | 1.75e-33 | 120 |
MS.gene47600.t1 | MTR_7g079840 | 51.948 | 77 | 37 | 0 | 17 | 93 | 71 | 147 | 6.14e-22 | 89.7 |
MS.gene47600.t1 | MTR_7g079840 | 46.753 | 77 | 38 | 2 | 18 | 93 | 27 | 101 | 7.66e-17 | 75.5 |
MS.gene47600.t1 | MTR_5g085200 | 48.352 | 91 | 38 | 2 | 18 | 101 | 270 | 358 | 1.04e-26 | 102 |
MS.gene47600.t1 | MTR_5g085200 | 48.913 | 92 | 42 | 2 | 6 | 93 | 70 | 160 | 1.51e-21 | 88.6 |
MS.gene47600.t1 | MTR_5g085200 | 42.105 | 76 | 40 | 1 | 18 | 93 | 44 | 115 | 4.47e-16 | 73.6 |
MS.gene47600.t1 | MTR_4g119280 | 55.696 | 79 | 33 | 1 | 17 | 95 | 329 | 405 | 2.76e-24 | 96.7 |
MS.gene47600.t1 | MTR_4g119280 | 46.753 | 77 | 41 | 0 | 17 | 93 | 87 | 163 | 8.99e-21 | 87.0 |
MS.gene47600.t1 | MTR_4g119280 | 43.590 | 78 | 43 | 1 | 16 | 93 | 41 | 117 | 1.81e-17 | 77.4 |
MS.gene47600.t1 | MTR_1g088875 | 41.880 | 117 | 63 | 2 | 17 | 129 | 90 | 205 | 8.11e-23 | 91.7 |
MS.gene47600.t1 | MTR_1g088875 | 54.902 | 51 | 21 | 1 | 18 | 68 | 295 | 343 | 1.73e-13 | 65.9 |
MS.gene47600.t1 | MTR_1g088875 | 38.272 | 81 | 49 | 1 | 15 | 95 | 43 | 122 | 2.30e-13 | 65.5 |
MS.gene47600.t1 | MTR_1g088875 | 41.880 | 117 | 63 | 2 | 17 | 129 | 90 | 205 | 9.88e-23 | 91.3 |
MS.gene47600.t1 | MTR_1g088875 | 54.902 | 51 | 21 | 1 | 18 | 68 | 295 | 343 | 1.93e-13 | 65.9 |
MS.gene47600.t1 | MTR_1g088875 | 38.272 | 81 | 49 | 1 | 15 | 95 | 43 | 122 | 2.45e-13 | 65.5 |
MS.gene47600.t1 | MTR_1g088875 | 41.880 | 117 | 63 | 2 | 17 | 129 | 90 | 205 | 1.06e-22 | 91.3 |
MS.gene47600.t1 | MTR_1g088875 | 53.704 | 54 | 23 | 1 | 18 | 71 | 295 | 346 | 9.39e-14 | 66.6 |
MS.gene47600.t1 | MTR_1g088875 | 38.272 | 81 | 49 | 1 | 15 | 95 | 43 | 122 | 2.62e-13 | 65.5 |
MS.gene47600.t1 | MTR_2g019740 | 46.914 | 81 | 42 | 1 | 15 | 94 | 87 | 167 | 1.33e-21 | 89.0 |
MS.gene47600.t1 | MTR_2g019740 | 45.570 | 79 | 43 | 0 | 16 | 94 | 301 | 379 | 1.23e-17 | 77.8 |
MS.gene47600.t1 | MTR_2g019740 | 42.308 | 78 | 45 | 0 | 16 | 93 | 42 | 119 | 3.33e-17 | 76.6 |
MS.gene47600.t1 | MTR_4g119280 | 46.753 | 77 | 41 | 0 | 17 | 93 | 87 | 163 | 8.62e-21 | 86.3 |
MS.gene47600.t1 | MTR_4g119280 | 43.590 | 78 | 43 | 1 | 16 | 93 | 41 | 117 | 2.00e-17 | 77.0 |
MS.gene47600.t1 | MTR_4g119280 | 54.717 | 53 | 22 | 1 | 17 | 69 | 329 | 379 | 4.88e-12 | 62.0 |
MS.gene47600.t1 | MTR_8g446930 | 39.252 | 107 | 54 | 2 | 18 | 120 | 245 | 344 | 1.13e-20 | 85.9 |
MS.gene47600.t1 | MTR_8g446930 | 41.525 | 118 | 62 | 2 | 4 | 119 | 26 | 138 | 1.50e-20 | 85.5 |
MS.gene47600.t1 | MTR_8g446930 | 39.252 | 107 | 54 | 2 | 18 | 120 | 395 | 494 | 1.77e-20 | 85.9 |
MS.gene47600.t1 | MTR_8g446930 | 43.119 | 109 | 55 | 2 | 13 | 119 | 185 | 288 | 1.04e-19 | 84.0 |
MS.gene47600.t1 | MTR_8g446930 | 38.372 | 86 | 46 | 2 | 18 | 97 | 138 | 222 | 6.69e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene47600.t1 | AT3G48440 | 64.000 | 100 | 35 | 1 | 2 | 100 | 326 | 425 | 3.08e-43 | 147 |
MS.gene47600.t1 | AT3G48440 | 42.466 | 73 | 38 | 2 | 23 | 93 | 160 | 230 | 9.21e-14 | 67.0 |
MS.gene47600.t1 | AT5G63260 | 51.181 | 127 | 54 | 2 | 2 | 128 | 315 | 433 | 8.41e-40 | 138 |
MS.gene47600.t1 | AT5G63260 | 39.080 | 87 | 53 | 0 | 7 | 93 | 134 | 220 | 2.92e-14 | 68.2 |
MS.gene47600.t1 | AT5G63260 | 51.181 | 127 | 54 | 2 | 2 | 128 | 331 | 449 | 8.61e-40 | 138 |
MS.gene47600.t1 | AT5G63260 | 39.773 | 88 | 53 | 0 | 6 | 93 | 149 | 236 | 3.63e-15 | 70.9 |
MS.gene47600.t1 | AT1G48195 | 64.935 | 77 | 27 | 0 | 16 | 92 | 4 | 80 | 9.92e-35 | 115 |
MS.gene47600.t1 | AT5G16540 | 65.823 | 79 | 27 | 0 | 18 | 96 | 219 | 297 | 1.20e-34 | 123 |
MS.gene47600.t1 | AT5G16540 | 49.351 | 77 | 39 | 0 | 17 | 93 | 62 | 138 | 2.44e-21 | 87.8 |
MS.gene47600.t1 | AT5G16540 | 46.835 | 79 | 39 | 2 | 18 | 95 | 18 | 94 | 1.15e-15 | 72.0 |
MS.gene47600.t1 | AT5G16540 | 65.823 | 79 | 27 | 0 | 18 | 96 | 240 | 318 | 1.28e-34 | 123 |
MS.gene47600.t1 | AT5G16540 | 49.351 | 77 | 39 | 0 | 17 | 93 | 83 | 159 | 2.19e-21 | 87.8 |
MS.gene47600.t1 | AT5G16540 | 46.835 | 79 | 39 | 2 | 18 | 95 | 39 | 115 | 1.03e-15 | 72.4 |
MS.gene47600.t1 | AT3G02830 | 64.557 | 79 | 28 | 0 | 18 | 96 | 271 | 349 | 6.20e-34 | 122 |
MS.gene47600.t1 | AT3G02830 | 45.545 | 101 | 54 | 1 | 17 | 116 | 81 | 181 | 6.45e-21 | 87.0 |
MS.gene47600.t1 | AT3G02830 | 44.872 | 78 | 42 | 1 | 18 | 95 | 37 | 113 | 2.89e-18 | 79.3 |
MS.gene47600.t1 | AT3G02830 | 64.557 | 79 | 28 | 0 | 18 | 96 | 251 | 329 | 6.44e-34 | 121 |
MS.gene47600.t1 | AT3G02830 | 45.545 | 101 | 54 | 1 | 17 | 116 | 61 | 161 | 6.32e-21 | 86.7 |
MS.gene47600.t1 | AT3G02830 | 44.872 | 78 | 42 | 1 | 18 | 95 | 17 | 93 | 3.00e-18 | 79.3 |
MS.gene47600.t1 | AT2G47850 | 60.000 | 80 | 32 | 0 | 16 | 95 | 162 | 241 | 1.99e-30 | 111 |
MS.gene47600.t1 | AT2G47850 | 60.000 | 80 | 32 | 0 | 16 | 95 | 258 | 337 | 7.33e-30 | 111 |
MS.gene47600.t1 | AT2G47850 | 36.250 | 80 | 50 | 1 | 16 | 95 | 40 | 118 | 5.36e-15 | 70.5 |
MS.gene47600.t1 | AT2G47850 | 52.941 | 51 | 24 | 0 | 17 | 67 | 86 | 136 | 2.75e-11 | 59.7 |
MS.gene47600.t1 | AT2G47850 | 60.000 | 80 | 32 | 0 | 16 | 95 | 284 | 363 | 1.57e-29 | 110 |
MS.gene47600.t1 | AT2G47850 | 49.425 | 87 | 40 | 1 | 17 | 99 | 86 | 172 | 2.43e-21 | 88.6 |
MS.gene47600.t1 | AT2G47850 | 60.000 | 80 | 32 | 0 | 16 | 95 | 284 | 363 | 1.57e-29 | 110 |
MS.gene47600.t1 | AT2G47850 | 49.425 | 87 | 40 | 1 | 17 | 99 | 86 | 172 | 2.43e-21 | 88.6 |
MS.gene47600.t1 | AT5G16540 | 58.228 | 79 | 26 | 1 | 18 | 96 | 240 | 311 | 1.59e-27 | 104 |
MS.gene47600.t1 | AT5G16540 | 49.351 | 77 | 39 | 0 | 17 | 93 | 83 | 159 | 1.82e-21 | 88.2 |
MS.gene47600.t1 | AT5G16540 | 46.835 | 79 | 39 | 2 | 18 | 95 | 39 | 115 | 8.97e-16 | 72.4 |
MS.gene47600.t1 | AT3G06410 | 48.958 | 96 | 44 | 1 | 2 | 92 | 283 | 378 | 1.86e-27 | 105 |
MS.gene47600.t1 | AT3G06410 | 46.914 | 81 | 41 | 1 | 18 | 96 | 97 | 177 | 9.99e-20 | 84.0 |
MS.gene47600.t1 | AT3G06410 | 46.154 | 78 | 42 | 0 | 16 | 93 | 49 | 126 | 2.15e-19 | 82.8 |
MS.gene47600.t1 | AT5G18550 | 55.844 | 77 | 33 | 1 | 16 | 92 | 263 | 338 | 2.01e-25 | 99.4 |
MS.gene47600.t1 | AT5G18550 | 46.429 | 84 | 43 | 1 | 13 | 94 | 57 | 140 | 3.52e-21 | 87.8 |
MS.gene47600.t1 | AT5G18550 | 50.000 | 78 | 39 | 0 | 16 | 93 | 14 | 91 | 6.09e-21 | 87.0 |
MS.gene47600.t1 | AT5G18550 | 55.844 | 77 | 33 | 1 | 16 | 92 | 295 | 370 | 2.03e-25 | 99.8 |
MS.gene47600.t1 | AT5G18550 | 46.429 | 84 | 43 | 1 | 13 | 94 | 89 | 172 | 2.61e-21 | 88.2 |
MS.gene47600.t1 | AT5G18550 | 50.000 | 78 | 39 | 0 | 16 | 93 | 46 | 123 | 5.10e-21 | 87.4 |
MS.gene47600.t1 | AT5G18550 | 55.844 | 77 | 33 | 1 | 16 | 92 | 295 | 370 | 2.30e-25 | 99.8 |
MS.gene47600.t1 | AT5G18550 | 46.429 | 84 | 43 | 1 | 13 | 94 | 89 | 172 | 3.17e-21 | 88.2 |
MS.gene47600.t1 | AT5G18550 | 50.000 | 78 | 39 | 0 | 16 | 93 | 46 | 123 | 6.03e-21 | 87.4 |
MS.gene47600.t1 | AT5G16540 | 49.351 | 77 | 39 | 0 | 17 | 93 | 62 | 138 | 1.34e-21 | 87.0 |
MS.gene47600.t1 | AT5G16540 | 68.627 | 51 | 16 | 0 | 18 | 68 | 219 | 269 | 9.96e-19 | 79.7 |
MS.gene47600.t1 | AT5G16540 | 46.250 | 80 | 40 | 2 | 17 | 95 | 17 | 94 | 9.69e-16 | 71.6 |
MS.gene47600.t1 | AT5G18550 | 46.429 | 84 | 43 | 1 | 13 | 94 | 89 | 172 | 2.63e-21 | 88.2 |
MS.gene47600.t1 | AT5G18550 | 50.000 | 78 | 39 | 0 | 16 | 93 | 46 | 123 | 5.20e-21 | 87.4 |
MS.gene47600.t1 | AT5G18550 | 45.455 | 77 | 28 | 1 | 16 | 92 | 295 | 357 | 1.06e-18 | 80.9 |
MS.gene47600.t1 | AT1G04990 | 48.780 | 82 | 41 | 1 | 20 | 101 | 179 | 259 | 4.69e-21 | 86.7 |
MS.gene47600.t1 | AT1G04990 | 49.231 | 65 | 32 | 1 | 29 | 93 | 17 | 80 | 3.03e-14 | 67.8 |
MS.gene47600.t1 | AT1G04990 | 48.780 | 82 | 41 | 1 | 20 | 101 | 260 | 340 | 9.45e-21 | 86.7 |
MS.gene47600.t1 | AT1G04990 | 51.282 | 78 | 37 | 1 | 16 | 93 | 85 | 161 | 1.18e-20 | 86.3 |
MS.gene47600.t1 | AT1G04990 | 44.186 | 86 | 40 | 3 | 12 | 93 | 35 | 116 | 1.69e-14 | 68.9 |
MS.gene47600.t1 | AT1G04990 | 48.780 | 82 | 41 | 1 | 20 | 101 | 260 | 340 | 9.45e-21 | 86.7 |
MS.gene47600.t1 | AT1G04990 | 51.282 | 78 | 37 | 1 | 16 | 93 | 85 | 161 | 1.18e-20 | 86.3 |
MS.gene47600.t1 | AT1G04990 | 44.186 | 86 | 40 | 3 | 12 | 93 | 35 | 116 | 1.69e-14 | 68.9 |
MS.gene47600.t1 | AT1G04990 | 48.780 | 82 | 41 | 1 | 20 | 101 | 260 | 340 | 9.45e-21 | 86.7 |
MS.gene47600.t1 | AT1G04990 | 51.282 | 78 | 37 | 1 | 16 | 93 | 85 | 161 | 1.18e-20 | 86.3 |
MS.gene47600.t1 | AT1G04990 | 44.186 | 86 | 40 | 3 | 12 | 93 | 35 | 116 | 1.69e-14 | 68.9 |
MS.gene47600.t1 | AT1G04990 | 51.282 | 78 | 37 | 1 | 16 | 93 | 85 | 161 | 1.01e-20 | 86.3 |
MS.gene47600.t1 | AT1G04990 | 44.706 | 85 | 39 | 3 | 13 | 93 | 36 | 116 | 1.25e-14 | 69.3 |
MS.gene47600.t1 | AT1G04990 | 39.024 | 82 | 29 | 2 | 20 | 101 | 260 | 320 | 3.29e-12 | 62.4 |
MS.gene47600.t1 | AT3G12680 | 44.578 | 83 | 39 | 1 | 18 | 93 | 417 | 499 | 2.09e-20 | 85.9 |
MS.gene47600.t1 | AT3G12680 | 43.182 | 88 | 47 | 1 | 13 | 100 | 217 | 301 | 6.37e-19 | 81.6 |
MS.gene47600.t1 | AT3G12680 | 37.500 | 104 | 39 | 1 | 16 | 93 | 263 | 366 | 3.26e-17 | 76.6 |
MS.gene47600.t1 | AT2G32930 | 47.436 | 78 | 40 | 1 | 16 | 93 | 83 | 159 | 1.20e-19 | 83.6 |
MS.gene47600.t1 | AT2G32930 | 49.315 | 73 | 37 | 0 | 26 | 98 | 270 | 342 | 4.95e-19 | 82.0 |
MS.gene47600.t1 | AT2G32930 | 44.156 | 77 | 39 | 2 | 18 | 93 | 41 | 114 | 2.10e-15 | 71.6 |
MS.gene47600.t1 | AT2G32930 | 47.436 | 78 | 40 | 1 | 16 | 93 | 56 | 132 | 1.30e-19 | 83.6 |
MS.gene47600.t1 | AT2G32930 | 49.315 | 73 | 37 | 0 | 26 | 98 | 243 | 315 | 6.21e-19 | 81.6 |
MS.gene47600.t1 | AT2G32930 | 44.156 | 77 | 39 | 2 | 18 | 93 | 14 | 87 | 2.70e-15 | 71.2 |
MS.gene47600.t1 | AT2G32930 | 49.315 | 73 | 37 | 0 | 26 | 98 | 266 | 338 | 4.40e-19 | 82.0 |
MS.gene47600.t1 | AT2G32930 | 43.590 | 78 | 39 | 2 | 16 | 93 | 83 | 155 | 3.60e-15 | 70.9 |
MS.gene47600.t1 | AT2G32930 | 44.156 | 77 | 35 | 3 | 18 | 93 | 41 | 110 | 5.00e-13 | 64.7 |
MS.gene47600.t1 | AT1G04990 | 49.231 | 65 | 32 | 1 | 29 | 93 | 17 | 80 | 2.64e-14 | 67.8 |
MS.gene47600.t1 | AT1G04990 | 39.024 | 82 | 29 | 2 | 20 | 101 | 179 | 239 | 2.74e-12 | 62.4 |
Find 34 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGATATGGAATTTGCAAATT+TGG | 0.116818 | 3.3:-64923396 | MS.gene47600:CDS |
TCAGGTTCACCAGGTCTTTC+TGG | 0.127881 | 3.3:+64923661 | None:intergenic |
TGTAATGAGTGCACACATTC+TGG | 0.330211 | 3.3:+64923421 | None:intergenic |
TTTAAGAAGAAACTGCATTC+AGG | 0.330498 | 3.3:+64923643 | None:intergenic |
TGCACTCATTACAACCGATA+TGG | 0.357948 | 3.3:-64923411 | MS.gene47600:CDS |
CAAATTTGCAAATTCCATAT+CGG | 0.369456 | 3.3:+64923397 | None:intergenic |
GATAACGTCCAGGCATAGTT+GGG | 0.405460 | 3.3:+64923334 | None:intergenic |
CTTTCTGGAAACTCTTCAAC+TGG | 0.426995 | 3.3:+64923676 | None:intergenic |
AATTTCATCATCCAAAGAAC+CGG | 0.447322 | 3.3:-64923588 | MS.gene47600:CDS |
AAGGCAGACCCTTGTCACTT+AGG | 0.458239 | 3.3:+64923542 | None:intergenic |
CCCTTGTCACTTAGGTTGCA+TGG | 0.470112 | 3.3:+64923550 | None:intergenic |
AGTATTGAGGAGGCTGGAAG+TGG | 0.494418 | 3.3:-64923285 | MS.gene47600:CDS |
GGATTTAAATTTGCAATCCC+CGG | 0.510053 | 3.3:+64923618 | None:intergenic |
TGATAACGTCCAGGCATAGT+TGG | 0.516040 | 3.3:+64923333 | None:intergenic |
CACAAACTCGGCTAGTATTG+AGG | 0.521153 | 3.3:-64923298 | MS.gene47600:CDS |
TGGATGATGAAATTTGCAAT+GGG | 0.532458 | 3.3:+64923597 | None:intergenic |
TCGGCTAGTATTGAGGAGGC+TGG | 0.532916 | 3.3:-64923291 | MS.gene47600:CDS |
TTGGATGATGAAATTTGCAA+TGG | 0.544786 | 3.3:+64923596 | None:intergenic |
GGGGCGGTAGGTTTATCGGG+TGG | 0.565245 | 3.3:+64923355 | None:intergenic |
ATTGAGGAGGCTGGAAGTGG+AGG | 0.565408 | 3.3:-64923282 | MS.gene47600:CDS |
ACAATCCTCTCACACAAACT+CGG | 0.577005 | 3.3:-64923310 | MS.gene47600:CDS |
ACTAGCCGAGTTTGTGTGAG+AGG | 0.582786 | 3.3:+64923305 | None:intergenic |
AAATAACTTACAGGTCTCAA+AGG | 0.588071 | 3.3:+64923523 | None:intergenic |
AAACTGCATTCAGGTTCACC+AGG | 0.589001 | 3.3:+64923652 | None:intergenic |
GAGGATTGTTGATAACGTCC+AGG | 0.597566 | 3.3:+64923324 | None:intergenic |
GGGTGGTCATACTTACAAGC+TGG | 0.604093 | 3.3:+64923372 | None:intergenic |
ATAACGTCCAGGCATAGTTG+GGG | 0.618044 | 3.3:+64923335 | None:intergenic |
TCCATGCAACCTAAGTGACA+AGG | 0.634773 | 3.3:-64923551 | MS.gene47600:CDS |
CAACTGGTGTATGCTTATGA+CGG | 0.648143 | 3.3:+64923692 | None:intergenic |
TAACGTCCAGGCATAGTTGG+GGG | 0.648794 | 3.3:+64923336 | None:intergenic |
GAAGAGTTTCCAGAAAGACC+TGG | 0.657339 | 3.3:-64923670 | MS.gene47600:CDS |
CCATGCAACCTAAGTGACAA+GGG | 0.676957 | 3.3:-64923550 | MS.gene47600:CDS |
AAACTCGGCTAGTATTGAGG+AGG | 0.710931 | 3.3:-64923295 | MS.gene47600:CDS |
TTGTCACTTAGGTTGCATGG+AGG | 0.747188 | 3.3:+64923553 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAATGTTAGATCAAAGAAAC+TGG | + | chr3.3:64923513-64923532 | None:intergenic | 25.0% |
! | ATCAGAGTAAAATAACTTAC+AGG | + | chr3.3:64923464-64923483 | None:intergenic | 25.0% |
! | CAAATTTGCAAATTCCATAT+CGG | + | chr3.3:64923581-64923600 | None:intergenic | 25.0% |
! | TTAATATCTCGTGAAATTCA+GGG | - | chr3.3:64923531-64923550 | MS.gene47600:intron | 25.0% |
! | TTTAATATCTCGTGAAATTC+AGG | - | chr3.3:64923530-64923549 | MS.gene47600:intron | 25.0% |
AAATAACTTACAGGTCTCAA+AGG | + | chr3.3:64923455-64923474 | None:intergenic | 30.0% | |
AATTTCATCATCCAAAGAAC+CGG | - | chr3.3:64923387-64923406 | MS.gene47600:CDS | 30.0% | |
CGATATGGAATTTGCAAATT+TGG | - | chr3.3:64923579-64923598 | MS.gene47600:CDS | 30.0% | |
TGCAGTTTCTTCTTAAAAAC+CGG | - | chr3.3:64923338-64923357 | MS.gene47600:CDS | 30.0% | |
TGGATGATGAAATTTGCAAT+GGG | + | chr3.3:64923381-64923400 | None:intergenic | 30.0% | |
TTGGATGATGAAATTTGCAA+TGG | + | chr3.3:64923382-64923401 | None:intergenic | 30.0% | |
TTTAAGAAGAAACTGCATTC+AGG | + | chr3.3:64923335-64923354 | None:intergenic | 30.0% | |
! | AATTTTGTAATCCGGTTCTT+TGG | + | chr3.3:64923401-64923420 | None:intergenic | 30.0% |
! | ATGGAGGTAATTTTGTAATC+CGG | + | chr3.3:64923409-64923428 | None:intergenic | 30.0% |
CAGTTTCTTCTTAAAAACCG+GGG | - | chr3.3:64923340-64923359 | MS.gene47600:CDS | 35.0% | |
GCAGTTTCTTCTTAAAAACC+GGG | - | chr3.3:64923339-64923358 | MS.gene47600:CDS | 35.0% | |
GGATTTAAATTTGCAATCCC+CGG | + | chr3.3:64923360-64923379 | None:intergenic | 35.0% | |
ACAATCCTCTCACACAAACT+CGG | - | chr3.3:64923665-64923684 | MS.gene47600:CDS | 40.0% | |
CAACTGGTGTATGCTTATGA+CGG | + | chr3.3:64923286-64923305 | None:intergenic | 40.0% | |
TGCACTCATTACAACCGATA+TGG | - | chr3.3:64923564-64923583 | MS.gene47600:CDS | 40.0% | |
TGTAATGAGTGCACACATTC+TGG | + | chr3.3:64923557-64923576 | None:intergenic | 40.0% | |
! | AAACTGGTGACGTGTACATT+AGG | + | chr3.3:64923497-64923516 | None:intergenic | 40.0% |
! | AACTGGTGACGTGTACATTA+GGG | + | chr3.3:64923496-64923515 | None:intergenic | 40.0% |
! | CTTTCTGGAAACTCTTCAAC+TGG | + | chr3.3:64923302-64923321 | None:intergenic | 40.0% |
ATAACGTCCAGGCATAGTTG+GGG | + | chr3.3:64923643-64923662 | None:intergenic | 45.0% | |
CACAAACTCGGCTAGTATTG+AGG | - | chr3.3:64923677-64923696 | MS.gene47600:CDS | 45.0% | |
CCATGCAACCTAAGTGACAA+GGG | - | chr3.3:64923425-64923444 | MS.gene47600:CDS | 45.0% | |
GAAGAGTTTCCAGAAAGACC+TGG | - | chr3.3:64923305-64923324 | MS.gene47600:CDS | 45.0% | |
GATAACGTCCAGGCATAGTT+GGG | + | chr3.3:64923644-64923663 | None:intergenic | 45.0% | |
TCCATGCAACCTAAGTGACA+AGG | - | chr3.3:64923424-64923443 | MS.gene47600:CDS | 45.0% | |
! | AAACTCGGCTAGTATTGAGG+AGG | - | chr3.3:64923680-64923699 | MS.gene47600:CDS | 45.0% |
! | AAACTGCATTCAGGTTCACC+AGG | + | chr3.3:64923326-64923345 | None:intergenic | 45.0% |
! | TGATAACGTCCAGGCATAGT+TGG | + | chr3.3:64923645-64923664 | None:intergenic | 45.0% |
! | TTGTCACTTAGGTTGCATGG+AGG | + | chr3.3:64923425-64923444 | None:intergenic | 45.0% |
!! | GAGGATTGTTGATAACGTCC+AGG | + | chr3.3:64923654-64923673 | None:intergenic | 45.0% |
ACTAGCCGAGTTTGTGTGAG+AGG | + | chr3.3:64923673-64923692 | None:intergenic | 50.0% | |
GGGTGGTCATACTTACAAGC+TGG | + | chr3.3:64923606-64923625 | None:intergenic | 50.0% | |
TAACGTCCAGGCATAGTTGG+GGG | + | chr3.3:64923642-64923661 | None:intergenic | 50.0% | |
TCAGGTTCACCAGGTCTTTC+TGG | + | chr3.3:64923317-64923336 | None:intergenic | 50.0% | |
! | AAGGCAGACCCTTGTCACTT+AGG | + | chr3.3:64923436-64923455 | None:intergenic | 50.0% |
! | AGTATTGAGGAGGCTGGAAG+TGG | - | chr3.3:64923690-64923709 | MS.gene47600:CDS | 50.0% |
! | CCCTTGTCACTTAGGTTGCA+TGG | + | chr3.3:64923428-64923447 | None:intergenic | 50.0% |
ATTGAGGAGGCTGGAAGTGG+AGG | - | chr3.3:64923693-64923712 | MS.gene47600:CDS | 55.0% | |
GTTGGGGGCGGTAGGTTTAT+CGG | + | chr3.3:64923627-64923646 | None:intergenic | 55.0% | |
TTGGGGGCGGTAGGTTTATC+GGG | + | chr3.3:64923626-64923645 | None:intergenic | 55.0% | |
! | TCGGCTAGTATTGAGGAGGC+TGG | - | chr3.3:64923684-64923703 | MS.gene47600:CDS | 55.0% |
CAGGCATAGTTGGGGGCGGT+AGG | + | chr3.3:64923635-64923654 | None:intergenic | 65.0% | |
CGTCCAGGCATAGTTGGGGG+CGG | + | chr3.3:64923639-64923658 | None:intergenic | 65.0% | |
CTACCGCCCCCAACTATGCC+TGG | - | chr3.3:64923633-64923652 | MS.gene47600:CDS | 65.0% | |
GGGGCGGTAGGTTTATCGGG+TGG | + | chr3.3:64923623-64923642 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 64923260 | 64923737 | 64923260 | ID=MS.gene47600 |
chr3.3 | mRNA | 64923260 | 64923737 | 64923260 | ID=MS.gene47600.t1;Parent=MS.gene47600 |
chr3.3 | exon | 64923534 | 64923737 | 64923534 | ID=MS.gene47600.t1.exon1;Parent=MS.gene47600.t1 |
chr3.3 | CDS | 64923534 | 64923737 | 64923534 | ID=cds.MS.gene47600.t1;Parent=MS.gene47600.t1 |
chr3.3 | exon | 64923260 | 64923445 | 64923260 | ID=MS.gene47600.t1.exon2;Parent=MS.gene47600.t1 |
chr3.3 | CDS | 64923260 | 64923445 | 64923260 | ID=cds.MS.gene47600.t1;Parent=MS.gene47600.t1 |
Gene Sequence |
Protein sequence |