AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052610.t1 MTR_3g075190 92.982 513 31 4 1 510 1 511 0.0 971
MS.gene052610.t1 MTR_4g104260 52.355 552 198 13 17 510 25 569 0.0 531
MS.gene052610.t1 MTR_7g079840 35.849 371 205 7 170 510 17 384 9.31e-72 234
MS.gene052610.t1 MTR_7g079840 35.849 371 205 7 170 510 27 394 9.48e-72 234
MS.gene052610.t1 MTR_5g085200 37.910 335 166 12 170 482 44 358 2.05e-63 213
MS.gene052610.t1 MTR_4g119280 34.197 386 156 9 168 476 41 405 5.84e-59 203
MS.gene052610.t1 MTR_2g019740 34.593 344 183 9 168 475 42 379 2.13e-51 182
MS.gene052610.t1 MTR_1g088875 33.333 321 170 8 163 452 39 346 1.90e-48 171
MS.gene052610.t1 MTR_1g088875 41.880 117 63 2 398 510 90 205 3.82e-20 92.4
MS.gene052610.t1 MTR_1g088875 33.542 319 166 9 163 449 39 343 2.30e-48 171
MS.gene052610.t1 MTR_1g088875 41.880 117 63 2 398 510 90 205 3.64e-20 92.0
MS.gene052610.t1 MTR_1g088875 33.542 319 166 9 163 449 39 343 3.47e-48 170
MS.gene052610.t1 MTR_1g088875 41.880 117 63 2 398 510 90 205 3.97e-20 92.0
MS.gene052610.t1 MTR_4g119280 32.500 360 145 9 168 450 41 379 2.57e-47 169
MS.gene052610.t1 MTR_8g446930 30.481 374 155 9 167 501 37 344 2.22e-45 163
MS.gene052610.t1 MTR_8g446930 44.792 96 48 1 382 477 23 113 7.85e-18 85.5
MS.gene052610.t1 MTR_8g446930 30.864 405 166 13 136 501 165 494 1.92e-44 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052610.t1 AT3G48440 54.848 330 141 6 157 478 93 422 6.11e-124 370
MS.gene052610.t1 AT5G63260 55.263 342 141 5 170 507 98 431 8.94e-122 364
MS.gene052610.t1 AT5G63260 42.683 82 42 2 167 246 328 406 7.02e-14 73.9
MS.gene052610.t1 AT5G63260 52.793 358 141 6 170 507 98 447 1.99e-117 353
MS.gene052610.t1 AT5G63260 42.683 82 42 2 167 246 344 422 9.00e-14 73.9
MS.gene052610.t1 AT3G02830 39.875 321 172 6 170 477 37 349 3.39e-71 232
MS.gene052610.t1 AT3G02830 45.545 101 54 1 398 497 81 181 2.90e-18 87.4
MS.gene052610.t1 AT3G02830 42.529 87 43 2 170 253 271 353 4.86e-12 68.2
MS.gene052610.t1 AT3G02830 39.875 321 172 6 170 477 17 329 3.44e-71 231
MS.gene052610.t1 AT3G02830 45.545 101 54 1 398 497 61 161 2.94e-18 87.0
MS.gene052610.t1 AT3G02830 42.529 87 43 2 170 253 251 333 6.20e-12 67.8
MS.gene052610.t1 AT5G16540 40.453 309 154 7 170 477 39 318 1.33e-68 225
MS.gene052610.t1 AT5G16540 33.158 190 58 6 169 292 83 269 5.86e-17 83.2
MS.gene052610.t1 AT5G16540 43.529 85 41 2 170 251 240 320 5.22e-12 67.8
MS.gene052610.t1 AT5G16540 40.453 309 154 7 170 477 18 297 1.95e-68 224
MS.gene052610.t1 AT5G16540 33.158 190 58 6 169 292 62 248 7.19e-17 82.4
MS.gene052610.t1 AT5G16540 43.529 85 41 2 170 251 219 299 5.84e-12 67.8
MS.gene052610.t1 AT2G47850 37.079 356 187 10 148 476 18 363 1.00e-66 223
MS.gene052610.t1 AT2G47850 40.000 90 39 2 168 250 284 365 1.90e-12 69.7
MS.gene052610.t1 AT2G47850 37.079 356 187 10 148 476 18 363 1.00e-66 223
MS.gene052610.t1 AT2G47850 40.000 90 39 2 168 250 284 365 1.90e-12 69.7
MS.gene052610.t1 AT3G06410 39.466 337 166 9 168 473 49 378 1.34e-66 222
MS.gene052610.t1 AT3G06410 46.914 81 41 1 399 477 97 177 1.18e-17 85.9
MS.gene052610.t1 AT3G06410 46.154 78 42 0 397 474 49 126 8.56e-17 83.2
MS.gene052610.t1 AT3G06410 34.884 86 49 2 163 245 297 378 1.88e-11 66.6
MS.gene052610.t1 AT5G18550 38.485 330 174 8 168 473 46 370 2.64e-65 219
MS.gene052610.t1 AT5G18550 50.000 78 39 0 397 474 46 123 1.54e-18 88.6
MS.gene052610.t1 AT5G18550 38.485 330 174 8 168 473 14 338 2.94e-65 218
MS.gene052610.t1 AT5G18550 50.000 78 39 0 397 474 14 91 2.38e-18 87.8
MS.gene052610.t1 AT5G18550 38.485 330 174 8 168 473 46 370 3.35e-65 218
MS.gene052610.t1 AT5G18550 50.000 78 39 0 397 474 46 123 1.92e-18 88.2
MS.gene052610.t1 AT1G04990 37.243 341 188 10 147 482 21 340 2.08e-63 212
MS.gene052610.t1 AT1G04990 37.243 341 188 10 147 482 21 340 2.08e-63 212
MS.gene052610.t1 AT1G04990 37.243 341 188 10 147 482 21 340 2.08e-63 212
MS.gene052610.t1 AT5G16540 38.511 309 153 8 170 477 39 311 3.29e-61 205
MS.gene052610.t1 AT5G16540 33.158 190 58 6 169 292 83 269 6.50e-17 82.8
MS.gene052610.t1 AT5G16540 43.902 82 38 1 170 251 240 313 1.29e-12 69.7
MS.gene052610.t1 AT2G32930 35.277 343 192 10 148 479 19 342 4.63e-58 199
MS.gene052610.t1 AT5G18550 36.061 330 169 8 168 473 46 357 4.98e-58 199
MS.gene052610.t1 AT5G18550 50.000 78 39 0 397 474 46 123 1.52e-18 88.6
MS.gene052610.t1 AT2G32930 35.542 332 184 10 159 479 3 315 8.28e-57 195
MS.gene052610.t1 AT2G32930 34.985 343 189 11 148 479 19 338 1.64e-54 190
MS.gene052610.t1 AT1G04990 34.897 341 176 11 147 482 21 320 3.31e-54 187
MS.gene052610.t1 AT5G16540 38.434 281 143 7 170 449 18 269 2.41e-52 179
MS.gene052610.t1 AT5G16540 49.351 77 39 0 398 474 62 138 8.37e-19 87.0
MS.gene052610.t1 AT5G16540 33.158 190 58 6 169 292 62 248 5.17e-17 81.6
MS.gene052610.t1 AT5G16540 46.835 79 39 2 399 476 18 94 4.59e-14 72.8
MS.gene052610.t1 AT2G47850 32.931 331 209 5 148 476 18 337 2.02e-49 176
MS.gene052610.t1 AT2G47850 40.000 90 39 2 168 250 258 339 1.11e-12 70.5
MS.gene052610.t1 AT1G04990 36.604 265 146 9 223 482 12 259 3.96e-45 161
MS.gene052610.t1 AT1G04990 42.105 76 44 0 217 292 177 252 1.26e-12 69.3
MS.gene052610.t1 AT3G12680 30.081 369 196 9 149 474 150 499 1.09e-44 165
MS.gene052610.t1 AT3G12680 31.118 331 161 10 136 428 198 499 4.47e-36 140
MS.gene052610.t1 AT3G12680 36.095 169 64 3 171 297 338 504 1.16e-24 107
MS.gene052610.t1 AT3G12680 45.977 87 42 2 394 478 217 300 1.28e-16 83.2
MS.gene052610.t1 AT2G47850 38.618 246 118 8 256 476 4 241 3.39e-42 154
MS.gene052610.t1 AT2G47850 41.935 93 44 1 200 292 157 239 8.85e-17 82.0
MS.gene052610.t1 AT2G47850 40.000 90 39 2 168 250 162 243 4.30e-13 70.9
MS.gene052610.t1 AT1G04990 33.955 268 129 11 223 482 12 239 3.11e-36 137
MS.gene052610.t1 AT1G48195 64.935 77 27 0 397 473 4 80 4.94e-32 118
MS.gene052610.t1 AT1G48195 37.662 77 48 0 215 291 4 80 2.58e-12 63.2
MS.gene052610.t1 AT1G48195 41.250 80 42 2 168 245 4 80 9.56e-11 58.5

Find 132 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATATGGAATTTGCAAATT+TGG 0.116818 3.1:-61797861 MS.gene052610:CDS
TCAGGTTCACCAGGTCTTTC+TGG 0.127881 3.1:+61798126 None:intergenic
AAGACTGGAACTTGCAAATT+TGG 0.144169 3.1:-61800538 MS.gene052610:CDS
GAACCGGTGCACATGTAATA+AGG 0.277127 3.1:+61799235 None:intergenic
AAAATACCTTGCATTCTATC+TGG 0.302106 3.1:+61800202 None:intergenic
GGCAGGAGAAAGAGATGAAT+TGG 0.309939 3.1:-61800238 MS.gene052610:CDS
TCCATTCCAGTCAGAACTTC+GGG 0.313058 3.1:+61799003 None:intergenic
GGAGGGTATGACTCCACTTT+AGG 0.326168 3.1:-61799160 MS.gene052610:CDS
TGTAATGAGTGCACACATTC+TGG 0.330211 3.1:+61797886 None:intergenic
TTTAAGAAGAAACTGCATTC+AGG 0.330498 3.1:+61798108 None:intergenic
ACCTGGTTTCTTCTCCAAAC+AGG 0.348538 3.1:+61800493 None:intergenic
TGCACTCATTACAACCGATA+TGG 0.357948 3.1:-61797876 MS.gene052610:CDS
AAAGAACAGTCTTCAGCTTC+AGG 0.362830 3.1:+61800568 None:intergenic
TAAGCATTCGTTTCCATAGC+TGG 0.369326 3.1:+61798186 None:intergenic
CAAATTTGCAAATTCCATAT+CGG 0.369456 3.1:+61797862 None:intergenic
TCAACAATCTCAATCACATT+TGG 0.369732 3.1:-61801076 MS.gene052610:CDS
TGACAGTATTATTCAAGATC+TGG 0.369833 3.1:-61799500 MS.gene052610:intron
TGCACCGGTTCTTGTAAGTT+TGG 0.370387 3.1:-61799223 MS.gene052610:CDS
GCAAGTTTAATCACCCTGTT+TGG 0.377149 3.1:-61800507 MS.gene052610:CDS
TATGACTCCACTTTAGGATA+TGG 0.386430 3.1:-61799154 MS.gene052610:CDS
TTCTGACTGGAATGGATATC+AGG 0.390808 3.1:-61798996 MS.gene052610:intron
GAGGATGGAATTGAGGAAAA+AGG 0.391224 3.1:-61800934 MS.gene052610:CDS
TGCTCCAAACTTACAAGAAC+CGG 0.396802 3.1:+61799219 None:intergenic
CCTTGGCCTACCTATTCGTT+TGG 0.402338 3.1:-61799396 MS.gene052610:intron
GATAACGTCCAGGCATAGTT+GGG 0.405460 3.1:+61797799 None:intergenic
TGCTGTTCTAGAATTTGATA+AGG 0.409379 3.1:-61800884 MS.gene052610:CDS
TGATTGAGATATGAGGGTTC+AGG 0.415836 3.1:+61801006 None:intergenic
TGAGGGTTCAGGATGATGAT+TGG 0.419375 3.1:+61801017 None:intergenic
TCAGGATGATGATTGGAAAC+AGG 0.426300 3.1:+61801024 None:intergenic
CTTTCTGGAAACTCTTCAAC+TGG 0.426995 3.1:+61798141 None:intergenic
GCTGGATTGTTCACGGCATA+TGG 0.429292 3.1:+61798204 None:intergenic
TTCCATAGCTGGATTGTTCA+CGG 0.431515 3.1:+61798197 None:intergenic
AAAGCTTATACCAAACGAAT+AGG 0.433676 3.1:+61799386 None:intergenic
AAAGGTTCAAACTTTGAAGT+TGG 0.439652 3.1:-61800916 MS.gene052610:CDS
ATCTGCTGAAAACTTTCCTC+TGG 0.440653 3.1:+61799439 None:intergenic
GGTCAATTGATTGAGATATG+AGG 0.446208 3.1:+61800999 None:intergenic
AATTTCATCATCCAAAGAAC+CGG 0.447322 3.1:-61798053 MS.gene052610:CDS
ATGATAATGTGGTGAGTGAT+TGG 0.454378 3.1:-61800663 MS.gene052610:CDS
GTGAGTGGAATTGATGATAA+AGG 0.457463 3.1:-61800799 MS.gene052610:CDS
AAGGCAGACCCTTGTCACTT+AGG 0.458239 3.1:+61798007 None:intergenic
ATCATAATTTCACCGACTCC+AGG 0.458700 3.1:-61799034 MS.gene052610:CDS
TCTTCAGCTTCAGGCCTCAA+TGG 0.459779 3.1:+61800577 None:intergenic
GAAAGATGAGGATGGAATTG+AGG 0.460065 3.1:-61800941 MS.gene052610:CDS
GAAATTATGATTGGCGCAAA+AGG 0.463542 3.1:+61799046 None:intergenic
GCTGTTCTAGAATTTGATAA+GGG 0.467346 3.1:-61800883 MS.gene052610:CDS
CCCTTGTCACTTAGGTTGCA+TGG 0.470112 3.1:+61798015 None:intergenic
GACAGTATTATTCAAGATCT+GGG 0.475323 3.1:-61799499 MS.gene052610:intron
CATCAAGTTCATGATGATGA+TGG 0.477201 3.1:-61800715 MS.gene052610:CDS
GAACTTCGGGGAGAAGCCCC+TGG 0.478122 3.1:+61799016 None:intergenic
TCTGAAGCTCATCATCAAGT+TGG 0.490964 3.1:+61800977 None:intergenic
CCCGATCCTACATCTGTTGG+AGG 0.492082 3.1:-61799178 MS.gene052610:CDS
CTGAAGCTCATCATCAAGTT+GGG 0.493894 3.1:+61800978 None:intergenic
AGTATTGAGGAGGCTGGAAG+TGG 0.494418 3.1:-61797750 MS.gene052610:CDS
CATCCCGATCCTACATCTGT+TGG 0.500007 3.1:-61799181 MS.gene052610:CDS
ATCCATTCCAGTCAGAACTT+CGG 0.504723 3.1:+61799002 None:intergenic
CCCTGTTTGGAGAAGAAACC+AGG 0.508022 3.1:-61800494 MS.gene052610:intron
GGATTTAAATTTGCAATCCC+CGG 0.510053 3.1:+61798083 None:intergenic
GTCAATTGATTGAGATATGA+GGG 0.510110 3.1:+61801000 None:intergenic
AACCGGTGCACATGTAATAA+GGG 0.510825 3.1:+61799236 None:intergenic
TGATAACGTCCAGGCATAGT+TGG 0.516040 3.1:+61797798 None:intergenic
CACAAACTCGGCTAGTATTG+AGG 0.521153 3.1:-61797763 MS.gene052610:CDS
CTTCTCCCCGAAGTTCTGAC+TGG 0.521361 3.1:-61799009 MS.gene052610:CDS
CCCTCCAACAGATGTAGGAT+CGG 0.524928 3.1:+61799177 None:intergenic
TCCATTACCATATCCTAAAG+TGG 0.526454 3.1:+61799147 None:intergenic
TAGATGATTGTGACACGTCT+TGG 0.526550 3.1:+61799110 None:intergenic
TGATGAGCTTCAGAACAAGT+TGG 0.527576 3.1:-61800968 MS.gene052610:CDS
GGAGTCGGTGAAATTATGAT+TGG 0.532435 3.1:+61799037 None:intergenic
TGGATGATGAAATTTGCAAT+GGG 0.532458 3.1:+61798062 None:intergenic
TCGGCTAGTATTGAGGAGGC+TGG 0.532916 3.1:-61797756 MS.gene052610:CDS
AGGAGAAAGAGATGAATTGG+AGG 0.535415 3.1:-61800235 MS.gene052610:CDS
TTGGATTTGAAAGATGAGGA+TGG 0.538154 3.1:-61800949 MS.gene052610:CDS
CCTCCAACAGATGTAGGATC+GGG 0.539485 3.1:+61799178 None:intergenic
TCATAATTTCACCGACTCCA+GGG 0.539855 3.1:-61799033 MS.gene052610:CDS
CAAGTTGGATTTGAAAGATG+AGG 0.539987 3.1:-61800953 MS.gene052610:CDS
TGCCCTTATTACATGTGCAC+CGG 0.541076 3.1:-61799238 MS.gene052610:CDS
TTGGATGATGAAATTTGCAA+TGG 0.544786 3.1:+61798061 None:intergenic
CGGGGAGAAGCCCCTGGAGT+CGG 0.550896 3.1:+61799022 None:intergenic
CAGGATGATGATTGGAAACA+GGG 0.550924 3.1:+61801025 None:intergenic
TGCCGTGAACAATCCAGCTA+TGG 0.554540 3.1:-61798199 MS.gene052610:CDS
GGTTGGAGTGGTGATTATGA+TGG 0.555762 3.1:-61800694 MS.gene052610:CDS
TCATACCCTCCAACAGATGT+AGG 0.560380 3.1:+61799172 None:intergenic
CCCCGAAGTTCTGACTGGAA+TGG 0.564246 3.1:-61799004 MS.gene052610:CDS
ATCAAGCCAGATAGAATGCA+AGG 0.564984 3.1:-61800208 MS.gene052610:intron
GGGGCGGTAGGTTTATCGGG+TGG 0.565245 3.1:+61797820 None:intergenic
ATTGAGGAGGCTGGAAGTGG+AGG 0.565408 3.1:-61797747 MS.gene052610:CDS
GGAGTGGTGATTATGATGGT+TGG 0.569129 3.1:-61800690 MS.gene052610:CDS
TCCACTTTAGGATATGGTAA+TGG 0.572990 3.1:-61799148 MS.gene052610:CDS
ACAATCCTCTCACACAAACT+CGG 0.577005 3.1:-61797775 MS.gene052610:CDS
CTTATACCAAACGAATAGGT+AGG 0.578718 3.1:+61799390 None:intergenic
ATCTGCCACAGTATGTGAGA+AGG 0.580537 3.1:-61800749 MS.gene052610:CDS
CCTGGTTTCTTCTCCAAACA+GGG 0.582322 3.1:+61800494 None:intergenic
GATTGTTGAGACGGTTCCAT+TGG 0.582618 3.1:+61801090 None:intergenic
ACTAGCCGAGTTTGTGTGAG+AGG 0.582786 3.1:+61797770 None:intergenic
CATAATTTCACCGACTCCAG+GGG 0.587604 3.1:-61799032 MS.gene052610:CDS
AAATAACTTACAGGTCTCAA+AGG 0.588071 3.1:+61797988 None:intergenic
AAACTGCATTCAGGTTCACC+AGG 0.589001 3.1:+61798117 None:intergenic
GAGTGATTGGATTGAGAATG+AGG 0.592997 3.1:-61800650 MS.gene052610:CDS
GAGGATTGTTGATAACGTCC+AGG 0.597566 3.1:+61797789 None:intergenic
TGTGATTGAGATTGTTGAGA+CGG 0.598910 3.1:+61801081 None:intergenic
ACAGTATGTGAGAAGGGACA+AGG 0.601001 3.1:-61800742 MS.gene052610:CDS
GGGTGGTCATACTTACAAGC+TGG 0.604093 3.1:+61797837 None:intergenic
ACAGTATTATTCAAGATCTG+GGG 0.604261 3.1:-61799498 MS.gene052610:intron
TCTGCCACAGTATGTGAGAA+GGG 0.604844 3.1:-61800748 MS.gene052610:CDS
CAGTATTATTCAAGATCTGG+GGG 0.613736 3.1:-61799497 MS.gene052610:CDS
CCAAACGAATAGGTAGGCCA+AGG 0.617276 3.1:+61799396 None:intergenic
ATAACGTCCAGGCATAGTTG+GGG 0.618044 3.1:+61797800 None:intergenic
TATGTTGATGAAAGAAGCAA+TGG 0.625149 3.1:-61800616 MS.gene052610:CDS
AAGTTCATGATGATGATGGT+TGG 0.628126 3.1:-61800711 MS.gene052610:CDS
ATTGAGAATGAGGTGGTGAG+TGG 0.632045 3.1:-61800640 MS.gene052610:CDS
TGTAAATTTGATCACACCAG+AGG 0.632238 3.1:-61799455 MS.gene052610:CDS
TTCACGGCATATGGTGAAGG+TGG 0.632618 3.1:+61798213 None:intergenic
TCCATGCAACCTAAGTGACA+AGG 0.634773 3.1:-61798016 MS.gene052610:CDS
GTTGATGAAAGAAGCAATGG+TGG 0.638205 3.1:-61800613 MS.gene052610:CDS
CCGATCCTACATCTGTTGGA+GGG 0.641989 3.1:-61799177 MS.gene052610:CDS
CAACTGGTGTATGCTTATGA+CGG 0.648143 3.1:+61798157 None:intergenic
TAACGTCCAGGCATAGTTGG+GGG 0.648794 3.1:+61797801 None:intergenic
TTGTTCACGGCATATGGTGA+AGG 0.648890 3.1:+61798210 None:intergenic
TTGTCCCTTCTCACATACTG+TGG 0.652329 3.1:+61800744 None:intergenic
GAAGAGTTTCCAGAAAGACC+TGG 0.657339 3.1:-61798135 MS.gene052610:CDS
ACTGATGTTGATGAAGTGAG+TGG 0.661166 3.1:-61800814 MS.gene052610:CDS
TGGTTGGAATGATGATAATG+TGG 0.669541 3.1:-61800674 MS.gene052610:CDS
TGATGAGAATGTGAATGAGA+AGG 0.672400 3.1:-61800842 MS.gene052610:CDS
CCATGCAACCTAAGTGACAA+GGG 0.676957 3.1:-61798015 MS.gene052610:CDS
CATGATGATGATGGTTGGAG+TGG 0.678716 3.1:-61800706 MS.gene052610:CDS
CAGTATGTGAGAAGGGACAA+GGG 0.679158 3.1:-61800741 MS.gene052610:CDS
GAGCTGAACAGTATCCATTG+AGG 0.685815 3.1:-61800591 MS.gene052610:CDS
AGGATGATGATTGGAAACAG+GGG 0.702661 3.1:+61801026 None:intergenic
AAACTCGGCTAGTATTGAGG+AGG 0.710931 3.1:-61797760 MS.gene052610:CDS
TTGTCACTTAGGTTGCATGG+AGG 0.747188 3.1:+61798018 None:intergenic
CCATTCCAGTCAGAACTTCG+GGG 0.756262 3.1:+61799004 None:intergenic
TGATTGGATTGAGAATGAGG+TGG 0.762353 3.1:-61800647 MS.gene052610:CDS
TTTCTGGTAGAAGACCATGG+GGG 0.864818 3.1:+61799085 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACTCATTATTATTATTTG+TGG - chr3.1:61798376-61798395 MS.gene052610:intron 15.0%
!!! AAACTTTTAAAACTAAATGA+AGG - chr3.1:61798538-61798557 MS.gene052610:intron 15.0%
!!! TGTACATTTTTTTATATCAT+CGG - chr3.1:61799877-61799896 MS.gene052610:intron 15.0%
!! AAATGCAAGTAATATACTTA+AGG - chr3.1:61800325-61800344 MS.gene052610:intron 20.0%
!! GTTATAATCTAAATAATAGC+AGG + chr3.1:61799260-61799279 None:intergenic 20.0%
!! TCATAAGAATAATTAACTGA+CGG + chr3.1:61800487-61800506 None:intergenic 20.0%
!! TGCATTCATTTATGTATATT+AGG - chr3.1:61798422-61798441 MS.gene052610:intron 20.0%
!!! AAACTTTTTTCTCTCTTTTT+AGG - chr3.1:61800078-61800097 MS.gene052610:intron 20.0%
!!! TTTGCTATATTGAAAAATGT+TGG - chr3.1:61799150-61799169 MS.gene052610:CDS 20.0%
!!! TTTTTCTGACATAATTTACT+CGG + chr3.1:61799043-61799062 None:intergenic 20.0%
! AAATGTTAGATCAAAGAAAC+TGG + chr3.1:61800885-61800904 None:intergenic 25.0%
! AATAGAATGGATGTATATAC+TGG + chr3.1:61800117-61800136 None:intergenic 25.0%
! ATCAGAGTAAAATAACTTAC+AGG + chr3.1:61800836-61800855 None:intergenic 25.0%
! CAAATTTGCAAATTCCATAT+CGG + chr3.1:61800953-61800972 None:intergenic 25.0%
! GACATTGTATGATAGAAAAT+TGG + chr3.1:61799925-61799944 None:intergenic 25.0%
! GTATAGTTAATACTGAGTTA+TGG - chr3.1:61800002-61800021 MS.gene052610:intron 25.0%
! GTCAGTTAATTATTCTTATG+AGG - chr3.1:61800486-61800505 MS.gene052610:intron 25.0%
! TACTGTCATATCATAACATT+AGG + chr3.1:61799300-61799319 None:intergenic 25.0%
! TCTTATATGTTATAGCATAG+CGG - chr3.1:61798866-61798885 MS.gene052610:intron 25.0%
! TGCCTATACAAAATACAAAT+TGG + chr3.1:61800549-61800568 None:intergenic 25.0%
! TTAATATCTCGTGAAATTCA+GGG - chr3.1:61800903-61800922 MS.gene052610:CDS 25.0%
! TTTAATATCTCGTGAAATTC+AGG - chr3.1:61800902-61800921 MS.gene052610:CDS 25.0%
!! GACCAATTTGTATTTTGTAT+AGG - chr3.1:61800544-61800563 MS.gene052610:CDS 25.0%
!! TGTTCTTTTTATCTTAAGAC+TGG - chr3.1:61798259-61798278 MS.gene052610:intron 25.0%
!!! TTTTTCAATATAGCAAAGCT+AGG + chr3.1:61799147-61799166 None:intergenic 25.0%
AAAATACCTTGCATTCTATC+TGG + chr3.1:61798613-61798632 None:intergenic 30.0%
AAAGCTTATACCAAACGAAT+AGG + chr3.1:61799429-61799448 None:intergenic 30.0%
AAATAACTTACAGGTCTCAA+AGG + chr3.1:61800827-61800846 None:intergenic 30.0%
AATTTCATCATCCAAAGAAC+CGG - chr3.1:61800759-61800778 MS.gene052610:CDS 30.0%
ACAGTATTATTCAAGATCTG+GGG - chr3.1:61799314-61799333 MS.gene052610:intron 30.0%
AGAATAATTAACTGACGGAA+AGG + chr3.1:61800482-61800501 None:intergenic 30.0%
ATACAAATTGGTCAAATTGC+TGG + chr3.1:61800537-61800556 None:intergenic 30.0%
ATCAATTATGAATATGCTGC+TGG - chr3.1:61799086-61799105 MS.gene052610:CDS 30.0%
CAAAACAACGAATAATAGAG+AGG + chr3.1:61800426-61800445 None:intergenic 30.0%
CATTTCAGATTAAGTACCTT+TGG - chr3.1:61800149-61800168 MS.gene052610:intron 30.0%
CGATATGGAATTTGCAAATT+TGG - chr3.1:61800951-61800970 MS.gene052610:CDS 30.0%
GACAGTATTATTCAAGATCT+GGG - chr3.1:61799313-61799332 MS.gene052610:intron 30.0%
GTCAATTGATTGAGATATGA+GGG + chr3.1:61797815-61797834 None:intergenic 30.0%
GTTAATTATTCTTATGAGGC+AGG - chr3.1:61800490-61800509 MS.gene052610:intron 30.0%
TACAAATTGGTCAAATTGCT+GGG + chr3.1:61800536-61800555 None:intergenic 30.0%
TCAACAATCTCAATCACATT+TGG - chr3.1:61797736-61797755 MS.gene052610:CDS 30.0%
TGACAGTATTATTCAAGATC+TGG - chr3.1:61799312-61799331 MS.gene052610:intron 30.0%
TGCAGTTTCTTCTTAAAAAC+CGG - chr3.1:61800710-61800729 MS.gene052610:CDS 30.0%
TGGATGATGAAATTTGCAAT+GGG + chr3.1:61800753-61800772 None:intergenic 30.0%
TGTTGTCAAATAGACTATAG+CGG - chr3.1:61798936-61798955 MS.gene052610:intron 30.0%
TTGGATGATGAAATTTGCAA+TGG + chr3.1:61800754-61800773 None:intergenic 30.0%
TTTAAGAAGAAACTGCATTC+AGG + chr3.1:61800707-61800726 None:intergenic 30.0%
TTTGTTAGTAATTGCCCTTA+GGG - chr3.1:61800209-61800228 MS.gene052610:CDS 30.0%
! AATTTTGTAATCCGGTTCTT+TGG + chr3.1:61800773-61800792 None:intergenic 30.0%
! AGCAGTTTCATTGAATTTTC+TGG + chr3.1:61799746-61799765 None:intergenic 30.0%
! ATGGAGGTAATTTTGTAATC+CGG + chr3.1:61800781-61800800 None:intergenic 30.0%
! ATTTGTTAGTAATTGCCCTT+AGG - chr3.1:61800208-61800227 MS.gene052610:intron 30.0%
! GTACTTAATCTGAAATGATG+TGG + chr3.1:61800146-61800165 None:intergenic 30.0%
! TATGTTGATGAAAGAAGCAA+TGG - chr3.1:61798196-61798215 MS.gene052610:CDS 30.0%
! TTTTATGAATGCCTTGACTA+TGG - chr3.1:61798682-61798701 MS.gene052610:intron 30.0%
!! AAAGGTTCAAACTTTGAAGT+TGG - chr3.1:61797896-61797915 MS.gene052610:intron 30.0%
!! AAATGAAGGTTTTTAGAGAG+AGG - chr3.1:61798552-61798571 MS.gene052610:intron 30.0%
!! AATGAAGGTTTTTAGAGAGA+GGG - chr3.1:61798553-61798572 MS.gene052610:intron 30.0%
!! GCTGTTCTAGAATTTGATAA+GGG - chr3.1:61797929-61797948 MS.gene052610:intron 30.0%
!! TGACTTTTAAGTAACTGATG+TGG + chr3.1:61800059-61800078 None:intergenic 30.0%
!! TGCTGTTCTAGAATTTGATA+AGG - chr3.1:61797928-61797947 MS.gene052610:intron 30.0%
AAACTTTCGTTGTTGTATCC+TGG - chr3.1:61799121-61799140 MS.gene052610:CDS 35.0%
AAGACTGGAACTTGCAAATT+TGG - chr3.1:61798274-61798293 MS.gene052610:intron 35.0%
ACAAGTTTAAGAAATGGCTC+AGG + chr3.1:61799237-61799256 None:intergenic 35.0%
AGCAGGACAAGTTTAAGAAA+TGG + chr3.1:61799243-61799262 None:intergenic 35.0%
AGCTCAGTATTGTCAAATAG+CGG - chr3.1:61798832-61798851 MS.gene052610:intron 35.0%
ATAGGTAGTGTTGTCAATCA+CGG + chr3.1:61799008-61799027 None:intergenic 35.0%
ATTATTGACAACTGTGGACT+AGG + chr3.1:61799962-61799981 None:intergenic 35.0%
ATTGTCAAATAGCGGCTATA+GGG - chr3.1:61798840-61798859 MS.gene052610:intron 35.0%
CAGTATTATTCAAGATCTGG+GGG - chr3.1:61799315-61799334 MS.gene052610:intron 35.0%
CAGTTTCTTCTTAAAAACCG+GGG - chr3.1:61800712-61800731 MS.gene052610:CDS 35.0%
CTCCTCTCAGAAAAATAGAA+AGG + chr3.1:61800572-61800591 None:intergenic 35.0%
CTTATACCAAACGAATAGGT+AGG + chr3.1:61799425-61799444 None:intergenic 35.0%
GAAATTATGATTGGCGCAAA+AGG + chr3.1:61799769-61799788 None:intergenic 35.0%
GAACATAAGAAAGTGATACC+TGG + chr3.1:61798339-61798358 None:intergenic 35.0%
GAATATGCTGCTGGAATAAT+GGG - chr3.1:61799095-61799114 MS.gene052610:CDS 35.0%
GATTGTGTAAGGTTAACTCT+AGG - chr3.1:61798771-61798790 MS.gene052610:intron 35.0%
GCAGTTTCTTCTTAAAAACC+GGG - chr3.1:61800711-61800730 MS.gene052610:CDS 35.0%
GGATTTAAATTTGCAATCCC+CGG + chr3.1:61800732-61800751 None:intergenic 35.0%
GGTCAATTGATTGAGATATG+AGG + chr3.1:61797816-61797835 None:intergenic 35.0%
TACAATGTCAATGTTTCCTG+TGG - chr3.1:61799936-61799955 MS.gene052610:intron 35.0%
TATTGTCAAATAGCGGCTAT+AGG - chr3.1:61798839-61798858 MS.gene052610:intron 35.0%
TCCATTACCATATCCTAAAG+TGG + chr3.1:61799668-61799687 None:intergenic 35.0%
TGAATATGCTGCTGGAATAA+TGG - chr3.1:61799094-61799113 MS.gene052610:CDS 35.0%
TGATGAGAATGTGAATGAGA+AGG - chr3.1:61797970-61797989 MS.gene052610:intron 35.0%
TGTAAATTTGATCACACCAG+AGG - chr3.1:61799357-61799376 MS.gene052610:intron 35.0%
TGTGATTGAGATTGTTGAGA+CGG + chr3.1:61797734-61797753 None:intergenic 35.0%
TTACACGTCAAACTATCACT+TGG + chr3.1:61800367-61800386 None:intergenic 35.0%
TTGGATTTGAAAGATGAGGA+TGG - chr3.1:61797863-61797882 MS.gene052610:CDS 35.0%
TTGTCAATCACGGAAAATAG+TGG + chr3.1:61798998-61799017 None:intergenic 35.0%
! AACGAATAATAGAGAGGTGT+AGG + chr3.1:61800420-61800439 None:intergenic 35.0%
! AGTAAGAGTGTACTAGAAAG+AGG + chr3.1:61798361-61798380 None:intergenic 35.0%
! ATGATAATGTGGTGAGTGAT+TGG - chr3.1:61798149-61798168 MS.gene052610:CDS 35.0%
! CAAGTTGGATTTGAAAGATG+AGG - chr3.1:61797859-61797878 MS.gene052610:CDS 35.0%
! CATCAAGTTCATGATGATGA+TGG - chr3.1:61798097-61798116 MS.gene052610:CDS 35.0%
! GTGAGTGGAATTGATGATAA+AGG - chr3.1:61798013-61798032 MS.gene052610:CDS 35.0%
! GTTTTACAGCTTAACTTCCT+TGG - chr3.1:61799399-61799418 MS.gene052610:CDS 35.0%
! TGGTTGGAATGATGATAATG+TGG - chr3.1:61798138-61798157 MS.gene052610:CDS 35.0%
!! AAGTTCATGATGATGATGGT+TGG - chr3.1:61798101-61798120 MS.gene052610:CDS 35.0%
!! AATTTTCTGGTAGAAGACCA+TGG + chr3.1:61799733-61799752 None:intergenic 35.0%
!! ATTTTCTGGTAGAAGACCAT+GGG + chr3.1:61799732-61799751 None:intergenic 35.0%
!! CACCTTTCTATTTTTCTGAG+AGG - chr3.1:61800567-61800586 MS.gene052610:CDS 35.0%
!! TATGACTCCACTTTAGGATA+TGG - chr3.1:61799658-61799677 MS.gene052610:intron 35.0%
!! TCCACTTTAGGATATGGTAA+TGG - chr3.1:61799664-61799683 MS.gene052610:intron 35.0%
AAAGAACAGTCTTCAGCTTC+AGG + chr3.1:61798247-61798266 None:intergenic 40.0%
AAATTGCTGGGAAAATGGCA+AGG + chr3.1:61800524-61800543 None:intergenic 40.0%
AACAACGCGGCTAAAATTTC+AGG + chr3.1:61799531-61799550 None:intergenic 40.0%
AACCGGTGCACATGTAATAA+GGG + chr3.1:61799579-61799598 None:intergenic 40.0%
ACAATCCTCTCACACAAACT+CGG - chr3.1:61801037-61801056 MS.gene052610:CDS 40.0%
AGGAGAAAGAGATGAATTGG+AGG - chr3.1:61798577-61798596 MS.gene052610:intron 40.0%
AGGATGATGATTGGAAACAG+GGG + chr3.1:61797789-61797808 None:intergenic 40.0%
ATCAAGCCAGATAGAATGCA+AGG - chr3.1:61798604-61798623 MS.gene052610:intron 40.0%
ATCCATTCCAGTCAGAACTT+CGG + chr3.1:61799813-61799832 None:intergenic 40.0%
ATCTGCTGAAAACTTTCCTC+TGG + chr3.1:61799376-61799395 None:intergenic 40.0%
CAACTGGTGTATGCTTATGA+CGG + chr3.1:61800658-61800677 None:intergenic 40.0%
CAGGATGATGATTGGAAACA+GGG + chr3.1:61797790-61797809 None:intergenic 40.0%
CCCTATCATGAAAAACAACG+CGG + chr3.1:61799544-61799563 None:intergenic 40.0%
CTGAAGCTCATCATCAAGTT+GGG + chr3.1:61797837-61797856 None:intergenic 40.0%
CTGAGCATTATTGACAACTG+TGG + chr3.1:61799968-61799987 None:intergenic 40.0%
GAAAGATGAGGATGGAATTG+AGG - chr3.1:61797871-61797890 MS.gene052610:CDS 40.0%
GAGGATGGAATTGAGGAAAA+AGG - chr3.1:61797878-61797897 MS.gene052610:CDS 40.0%
GAGTGATTGGATTGAGAATG+AGG - chr3.1:61798162-61798181 MS.gene052610:CDS 40.0%
GAGTTATGGCATGATCTGTA+AGG - chr3.1:61800016-61800035 MS.gene052610:intron 40.0%
GATGTGGTTGTGCAATAGAA+TGG + chr3.1:61800130-61800149 None:intergenic 40.0%
GCAAGTTTAATCACCCTGTT+TGG - chr3.1:61798305-61798324 MS.gene052610:intron 40.0%
GGAGTCGGTGAAATTATGAT+TGG + chr3.1:61799778-61799797 None:intergenic 40.0%
GTGGTGAAGGAAACAACAAT+TGG - chr3.1:61800234-61800253 MS.gene052610:CDS 40.0%
TAACCTTACACAATCTCCCA+TGG + chr3.1:61798766-61798785 None:intergenic 40.0%
TAAGCATTCGTTTCCATAGC+TGG + chr3.1:61800629-61800648 None:intergenic 40.0%
TAGATGATTGTGACACGTCT+TGG + chr3.1:61799705-61799724 None:intergenic 40.0%
TCAGGATGATGATTGGAAAC+AGG + chr3.1:61797791-61797810 None:intergenic 40.0%
TGATGAGCTTCAGAACAAGT+TGG - chr3.1:61797844-61797863 MS.gene052610:CDS 40.0%
TGATTGAGATATGAGGGTTC+AGG + chr3.1:61797809-61797828 None:intergenic 40.0%
TGATTGGATTGAGAATGAGG+TGG - chr3.1:61798165-61798184 MS.gene052610:CDS 40.0%
TGCACTCATTACAACCGATA+TGG - chr3.1:61800936-61800955 MS.gene052610:CDS 40.0%
TGCTCCAAACTTACAAGAAC+CGG + chr3.1:61799596-61799615 None:intergenic 40.0%
TGGTCAAATTGCTGGGAAAA+TGG + chr3.1:61800529-61800548 None:intergenic 40.0%
TGTAATGAGTGCACACATTC+TGG + chr3.1:61800929-61800948 None:intergenic 40.0%
TGTGTAAGGTTAACTCTAGG+AGG - chr3.1:61798774-61798793 MS.gene052610:intron 40.0%
TGTTGCATGCCATTCTTATG+AGG - chr3.1:61800444-61800463 MS.gene052610:intron 40.0%
TTCCATAGCTGGATTGTTCA+CGG + chr3.1:61800618-61800637 None:intergenic 40.0%
TTCTGACTGGAATGGATATC+AGG - chr3.1:61799816-61799835 MS.gene052610:intron 40.0%
TTGTCAAATAGCGGCTATAG+GGG - chr3.1:61798841-61798860 MS.gene052610:intron 40.0%
TTTCCATGGGAGATTGTGTA+AGG - chr3.1:61798760-61798779 MS.gene052610:intron 40.0%
! AAACTGGTGACGTGTACATT+AGG + chr3.1:61800869-61800888 None:intergenic 40.0%
! AACTGGTGACGTGTACATTA+GGG + chr3.1:61800868-61800887 None:intergenic 40.0%
! ACTGATGTTGATGAAGTGAG+TGG - chr3.1:61797998-61798017 MS.gene052610:intron 40.0%
! CAGCTATCTTTTTCTGCTGT+CGG - chr3.1:61799496-61799515 MS.gene052610:CDS 40.0%
! CTTTCTGGAAACTCTTCAAC+TGG + chr3.1:61800674-61800693 None:intergenic 40.0%
! GTTGATGAAAGAAGCAATGG+TGG - chr3.1:61798199-61798218 MS.gene052610:CDS 40.0%
! TCTGAAGCTCATCATCAAGT+TGG + chr3.1:61797838-61797857 None:intergenic 40.0%
!! ATCATAATTTCACCGACTCC+AGG - chr3.1:61799778-61799797 MS.gene052610:intron 40.0%
!! TCAGCATAGCTTGCTAAGTA+AGG + chr3.1:61799455-61799474 None:intergenic 40.0%
!! TCATAATTTCACCGACTCCA+GGG - chr3.1:61799779-61799798 MS.gene052610:intron 40.0%
!! TCTCTTTTTAGGCTCTCTTG+TGG - chr3.1:61800089-61800108 MS.gene052610:intron 40.0%
!! TTTTCTGGTAGAAGACCATG+GGG + chr3.1:61799731-61799750 None:intergenic 40.0%
!!! CCGCGTTGTTTTTCATGATA+GGG - chr3.1:61799541-61799560 MS.gene052610:intron 40.0%
ACAGTATGTGAGAAGGGACA+AGG - chr3.1:61798070-61798089 MS.gene052610:CDS 45.0%
ACCTGGTTTCTTCTCCAAAC+AGG + chr3.1:61798322-61798341 None:intergenic 45.0%
ACTTCTGAGCATGCATCCAA+AGG + chr3.1:61800168-61800187 None:intergenic 45.0%
AGATCTGGGGGTTGTAAGTT+TGG - chr3.1:61799327-61799346 MS.gene052610:intron 45.0%
AGTAATTGCCCTTAGGGTAG+TGG - chr3.1:61800215-61800234 MS.gene052610:CDS 45.0%
ATAACGTCCAGGCATAGTTG+GGG + chr3.1:61801015-61801034 None:intergenic 45.0%
ATCTCCCATGGAAAATCCCA+CGG + chr3.1:61798754-61798773 None:intergenic 45.0%
ATCTGCCACAGTATGTGAGA+AGG - chr3.1:61798063-61798082 MS.gene052610:CDS 45.0%
ATTGAGAATGAGGTGGTGAG+TGG - chr3.1:61798172-61798191 MS.gene052610:CDS 45.0%
CAATATAGCAAAGCTAGGCC+AGG + chr3.1:61799142-61799161 None:intergenic 45.0%
CACAAACTCGGCTAGTATTG+AGG - chr3.1:61801049-61801068 MS.gene052610:CDS 45.0%
CAGTATGTGAGAAGGGACAA+GGG - chr3.1:61798071-61798090 MS.gene052610:CDS 45.0%
CCATGCAACCTAAGTGACAA+GGG - chr3.1:61800797-61800816 MS.gene052610:CDS 45.0%
CCTGGTTTCTTCTCCAAACA+GGG + chr3.1:61798321-61798340 None:intergenic 45.0%
GAACCGGTGCACATGTAATA+AGG + chr3.1:61799580-61799599 None:intergenic 45.0%
GAAGAGTTTCCAGAAAGACC+TGG - chr3.1:61800677-61800696 MS.gene052610:CDS 45.0%
GAGCTGAACAGTATCCATTG+AGG - chr3.1:61798221-61798240 MS.gene052610:CDS 45.0%
GATAACGTCCAGGCATAGTT+GGG + chr3.1:61801016-61801035 None:intergenic 45.0%
GGAGTGGTGATTATGATGGT+TGG - chr3.1:61798122-61798141 MS.gene052610:CDS 45.0%
GGCAGGAGAAAGAGATGAAT+TGG - chr3.1:61798574-61798593 MS.gene052610:intron 45.0%
GGTTGGAGTGGTGATTATGA+TGG - chr3.1:61798118-61798137 MS.gene052610:CDS 45.0%
TAACTGACGGAAAGGAACAG+AGG + chr3.1:61800474-61800493 None:intergenic 45.0%
TCATACCCTCCAACAGATGT+AGG + chr3.1:61799643-61799662 None:intergenic 45.0%
TCCATGCAACCTAAGTGACA+AGG - chr3.1:61800796-61800815 MS.gene052610:CDS 45.0%
TCCATTCCAGTCAGAACTTC+GGG + chr3.1:61799812-61799831 None:intergenic 45.0%
TCTGCCACAGTATGTGAGAA+GGG - chr3.1:61798064-61798083 MS.gene052610:CDS 45.0%
TGAGGGTTCAGGATGATGAT+TGG + chr3.1:61797798-61797817 None:intergenic 45.0%
TGCCCTTATTACATGTGCAC+CGG - chr3.1:61799574-61799593 MS.gene052610:intron 45.0%
TGGGGGTTGTAAGTTTGGAA+AGG - chr3.1:61799332-61799351 MS.gene052610:intron 45.0%
TGTCAAATAGCGGCTATAGG+GGG - chr3.1:61798842-61798861 MS.gene052610:intron 45.0%
TTCCTTCACCACTACCCTAA+GGG + chr3.1:61800226-61800245 None:intergenic 45.0%
TTGTCCCTTCTCACATACTG+TGG + chr3.1:61798071-61798090 None:intergenic 45.0%
TTGTTCACGGCATATGGTGA+AGG + chr3.1:61800605-61800624 None:intergenic 45.0%
TTTCCTTCACCACTACCCTA+AGG + chr3.1:61800227-61800246 None:intergenic 45.0%
! AAACTCGGCTAGTATTGAGG+AGG - chr3.1:61801052-61801071 MS.gene052610:CDS 45.0%
! AAACTGCATTCAGGTTCACC+AGG + chr3.1:61800698-61800717 None:intergenic 45.0%
! TGATAACGTCCAGGCATAGT+TGG + chr3.1:61801017-61801036 None:intergenic 45.0%
! TTGTCACTTAGGTTGCATGG+AGG + chr3.1:61800797-61800816 None:intergenic 45.0%
! TTTCTGGTAGAAGACCATGG+GGG + chr3.1:61799730-61799749 None:intergenic 45.0%
!! AAGGTTTTTAGAGAGAGGGC+AGG - chr3.1:61798557-61798576 MS.gene052610:intron 45.0%
!! CATAATTTCACCGACTCCAG+GGG - chr3.1:61799780-61799799 MS.gene052610:intron 45.0%
!! CATGATGATGATGGTTGGAG+TGG - chr3.1:61798106-61798125 MS.gene052610:CDS 45.0%
!! GAGGATTGTTGATAACGTCC+AGG + chr3.1:61801026-61801045 None:intergenic 45.0%
!! TGCACCGGTTCTTGTAAGTT+TGG - chr3.1:61799589-61799608 MS.gene052610:intron 45.0%
!!! GCCGCGTTGTTTTTCATGAT+AGG - chr3.1:61799540-61799559 MS.gene052610:intron 45.0%
AATGCAAATTCCCTTGCCCG+TGG - chr3.1:61798734-61798753 MS.gene052610:intron 50.0%
ACTAGCCGAGTTTGTGTGAG+AGG + chr3.1:61801045-61801064 None:intergenic 50.0%
ACTCGGTCGAACTCAAGCAT+AGG + chr3.1:61799026-61799045 None:intergenic 50.0%
AGAGGCCTGCCTCATAAGAA+TGG + chr3.1:61800456-61800475 None:intergenic 50.0%
ATGCAAATTCCCTTGCCCGT+GGG - chr3.1:61798735-61798754 MS.gene052610:intron 50.0%
ATGGAAAATCCCACGGGCAA+GGG + chr3.1:61798747-61798766 None:intergenic 50.0%
CACAATCATCTACACCCCCA+TGG - chr3.1:61799713-61799732 MS.gene052610:intron 50.0%
CATCCCGATCCTACATCTGT+TGG - chr3.1:61799631-61799650 MS.gene052610:intron 50.0%
CCAAACGAATAGGTAGGCCA+AGG + chr3.1:61799419-61799438 None:intergenic 50.0%
CCATTCCAGTCAGAACTTCG+GGG + chr3.1:61799811-61799830 None:intergenic 50.0%
CCCTCCAACAGATGTAGGAT+CGG + chr3.1:61799638-61799657 None:intergenic 50.0%
CCCTGTTTGGAGAAGAAACC+AGG - chr3.1:61798318-61798337 MS.gene052610:intron 50.0%
CCGATCCTACATCTGTTGGA+GGG - chr3.1:61799635-61799654 MS.gene052610:intron 50.0%
CCTCCAACAGATGTAGGATC+GGG + chr3.1:61799637-61799656 None:intergenic 50.0%
CCTTGGCCTACCTATTCGTT+TGG - chr3.1:61799416-61799435 MS.gene052610:CDS 50.0%
CGCGGCTAAAATTTCAGGAC+AGG + chr3.1:61799526-61799545 None:intergenic 50.0%
GCATGCCATTCTTATGAGGC+AGG - chr3.1:61800448-61800467 MS.gene052610:intron 50.0%
GCTGGATTGTTCACGGCATA+TGG + chr3.1:61800611-61800630 None:intergenic 50.0%
GGGAAAATGGCAAGGAAGAG+AGG + chr3.1:61800516-61800535 None:intergenic 50.0%
GGGTGGTCATACTTACAAGC+TGG + chr3.1:61800978-61800997 None:intergenic 50.0%
TAACGTCCAGGCATAGTTGG+GGG + chr3.1:61801014-61801033 None:intergenic 50.0%
TCAGGTTCACCAGGTCTTTC+TGG + chr3.1:61800689-61800708 None:intergenic 50.0%
TCTCCCATGGAAAATCCCAC+GGG + chr3.1:61798753-61798772 None:intergenic 50.0%
TCTTCAGCTTCAGGCCTCAA+TGG + chr3.1:61798238-61798257 None:intergenic 50.0%
TGCCGTGAACAATCCAGCTA+TGG - chr3.1:61800613-61800632 MS.gene052610:CDS 50.0%
TTCACGGCATATGGTGAAGG+TGG + chr3.1:61800602-61800621 None:intergenic 50.0%
! AAGGCAGACCCTTGTCACTT+AGG + chr3.1:61800808-61800827 None:intergenic 50.0%
! AGTATTGAGGAGGCTGGAAG+TGG - chr3.1:61801062-61801081 MS.gene052610:CDS 50.0%
! CCCTTGTCACTTAGGTTGCA+TGG + chr3.1:61800800-61800819 None:intergenic 50.0%
! GGAGGGTATGACTCCACTTT+AGG - chr3.1:61799652-61799671 MS.gene052610:intron 50.0%
! TTGCCCGTGGGATTTTCCAT+GGG - chr3.1:61798747-61798766 MS.gene052610:intron 50.0%
ATTGAGGAGGCTGGAAGTGG+AGG - chr3.1:61801065-61801084 MS.gene052610:CDS 55.0%
CATGGAAAATCCCACGGGCA+AGG + chr3.1:61798748-61798767 None:intergenic 55.0%
CCCGATCCTACATCTGTTGG+AGG - chr3.1:61799634-61799653 MS.gene052610:intron 55.0%
CGACGCACAAGCCATAGTCA+AGG + chr3.1:61798696-61798715 None:intergenic 55.0%
GTTGGGGGCGGTAGGTTTAT+CGG + chr3.1:61800999-61801018 None:intergenic 55.0%
TTGGGGGCGGTAGGTTTATC+GGG + chr3.1:61800998-61801017 None:intergenic 55.0%
! CCCCGAAGTTCTGACTGGAA+TGG - chr3.1:61799808-61799827 MS.gene052610:intron 55.0%
! CTTCTCCCCGAAGTTCTGAC+TGG - chr3.1:61799803-61799822 MS.gene052610:intron 55.0%
! CTTGCCCGTGGGATTTTCCA+TGG - chr3.1:61798746-61798765 MS.gene052610:intron 55.0%
! TCGGCTAGTATTGAGGAGGC+TGG - chr3.1:61801056-61801075 MS.gene052610:CDS 55.0%
! TGCCCTTAGGGTAGTGGTGA+AGG - chr3.1:61800221-61800240 MS.gene052610:CDS 55.0%
!! ACAACTGTGGACTAGGCCAC+AGG + chr3.1:61799955-61799974 None:intergenic 55.0%
CAGGCATAGTTGGGGGCGGT+AGG + chr3.1:61801007-61801026 None:intergenic 65.0%
CGTCCAGGCATAGTTGGGGG+CGG + chr3.1:61801011-61801030 None:intergenic 65.0%
CTACCGCCCCCAACTATGCC+TGG - chr3.1:61801005-61801024 MS.gene052610:CDS 65.0%
GAACTTCGGGGAGAAGCCCC+TGG + chr3.1:61799799-61799818 None:intergenic 65.0%
GGGGCGGTAGGTTTATCGGG+TGG + chr3.1:61800995-61801014 None:intergenic 65.0%
CGGGGAGAAGCCCCTGGAGT+CGG + chr3.1:61799793-61799812 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 61797725 61801109 61797725 ID=MS.gene052610
chr3.1 mRNA 61797725 61801109 61797725 ID=MS.gene052610.t1;Parent=MS.gene052610
chr3.1 exon 61800495 61801109 61800495 ID=MS.gene052610.t1.exon1;Parent=MS.gene052610.t1
chr3.1 CDS 61800495 61801109 61800495 ID=cds.MS.gene052610.t1;Parent=MS.gene052610.t1
chr3.1 exon 61800209 61800274 61800209 ID=MS.gene052610.t1.exon2;Parent=MS.gene052610.t1
chr3.1 CDS 61800209 61800274 61800209 ID=cds.MS.gene052610.t1;Parent=MS.gene052610.t1
chr3.1 exon 61799397 61799516 61799397 ID=MS.gene052610.t1.exon3;Parent=MS.gene052610.t1
chr3.1 CDS 61799397 61799516 61799397 ID=cds.MS.gene052610.t1;Parent=MS.gene052610.t1
chr3.1 exon 61798997 61799272 61798997 ID=MS.gene052610.t1.exon4;Parent=MS.gene052610.t1
chr3.1 CDS 61798997 61799272 61798997 ID=cds.MS.gene052610.t1;Parent=MS.gene052610.t1
chr3.1 exon 61797999 61798268 61797999 ID=MS.gene052610.t1.exon5;Parent=MS.gene052610.t1
chr3.1 CDS 61797999 61798268 61797999 ID=cds.MS.gene052610.t1;Parent=MS.gene052610.t1
chr3.1 exon 61797725 61797910 61797725 ID=MS.gene052610.t1.exon6;Parent=MS.gene052610.t1
chr3.1 CDS 61797725 61797910 61797725 ID=cds.MS.gene052610.t1;Parent=MS.gene052610.t1
Gene Sequence

>MS.gene052610

ATGGAACCGTCTCAACAATCTCAATCACATTTGGCTTCTTCTCATCATGTTCAACATATTTCCCCTGTTTCCAATCATCATCCTGAACCCTCATATCTCAATCAATTGACCCAACTTGATGATGAGCTTCAGAACAAGTTGGATTTGAAAGATGAGGATGGAATTGAGGAAAAAGGTTCAAACTTTGAAGTTGGTGATGAAGCTGCTGTTCTAGAATTTGATAAGGGACAAGAGTGTCATGACGATGATGAGAATGTGAATGAGAAGGTGAGTACTGATGTTGATGAAGTGAGTGGAATTGATGATAAAGGTTCAAACTTTGAAGATGATGATGAAAAATCTGCCACAGTATGTGAGAAGGGACAAGGGTTTCATCAAGTTCATGATGATGATGGTTGGAGTGGTGATTATGATGGTTGGAATGATGATAATGTGGTGAGTGATTGGATTGAGAATGAGGTGGTGAGTGGATATGTTGATGAAAGAAGCAATGGTGGAGCTGAACAGTATCCATTGAGGCCTGAAGCTGAAGACTGTTCTTTTTATCTTAAGACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTTGGAGAAGAAACCAGGTATCACTTTCTTATGTTCCTCTTTCTAGTACACTCTTACTCATTATTATTATTTGTGGTTGCATTGAATGTTTAATACTAATGCATTCATTTATGTATATTAGGTATTGAAAGAGAAGCATAAATTTCACTCATGCAAACATGTTCACTTCTTAAAAGCTGCTTCTGTGTTTTCATGATTTAATTGACTTTTATTTAAAACTTTTAAAACTAAATGAAGGTTTTTAGAGAGAGGGCAGGAGAAAGAGATGAATTGGAGGAAAGATCAAGCCAGATAGAATGCAAGGTATTTTCAAAATTGTGCTGTTATATTCTGTTGAAAACTTTAGATTTAATATTGTATTTTATGAATGCCTTGACTATGGCTTGTGCGTCGATTGCATGTAGTTATTAAAATGCAAATTCCCTTGCCCGTGGGATTTTCCATGGGAGATTGTGTAAGGTTAACTCTAGGAGGTGTACATGTACATGTATTTTATATTCTTCATTCTTAGCTCAGTATTGTCAAATAGCGGCTATAGGGGGTTCTTATATGTTATAGCATAGCGGAATATGAATGAATCACTATTCTTTAATGATACACTATTAGTACAGAGTGTTGTCAAATAGACTATAGCGGCACTGTAGCAATGTAGCGTAACAGAATTTTAAAAAACCACTATTTTCCGTGATTGACAACACTACCTATGCTTGAGTTCGACCGAGTAAATTATGTCAGAAAAATTATTTTATACTAGAATTATTTGATCAATTATGAATATGCTGCTGGAATAATGGGAAAAAACTTTCGTTGTTGTATCCTGGCCTAGCTTTGCTATATTGAAAAATGTTGGATCTCTTAAACAATGTTTAGACGTAACATGCTTGCATATGATGTGTATGTTTATTCTCTTTCCTGAGCCATTTCTTAAACTTGTCCTGCTATTATTTAGATTATAACGATTTTTTTTTCTGTTTCCTAATGTTATGATATGACAGTATTATTCAAGATCTGGGGGTTGTAAGTTTGGAAAGGATTGTAAATTTGATCACACCAGAGGAAAGTTTTCAGCAGATCAAGTTTTACAGCTTAACTTCCTTGGCCTACCTATTCGTTTGGTATAAGCTTTTTTCCTTACTTAGCAAGCTATGCTGAAAGTTTGTTTGCGTACATTATCAGCTATCTTTTTCTGCTGTCGGAATACCTGTCCTGAAATTTTAGCCGCGTTGTTTTTCATGATAGGGTGAGAAAGAATGCCCTTATTACATGTGCACCGGTTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACATCTGTTGGAGGGTATGACTCCACTTTAGGATATGGTAATGGAAGTTCTATTTCATTCCAAGACGTGTCACAATCATCTACACCCCCATGGTCTTCTACCAGAAAATTCAATGAAACTGCTCCTTTTGCGCCAATCATAATTTCACCGACTCCAGGGGCTTCTCCCCGAAGTTCTGACTGGAATGGATATCAGGTAAAATCGATAGACTTGATGCTAATAACTATGTAACAATGTACATTTTTTTATATCATCGGTACATGATGACAGATCACTCTGCCAATTTTCTATCATACAATGTCAATGTTTCCTGTGGCCTAGTCCACAGTTGTCAATAATGCTCAGTTTAATGTGTGTTTGTATAGTTAATACTGAGTTATGGCATGATCTGTAAGGTATTAAGTATTGTACAACCACATCAGTTACTTAAAAGTCAAACTTTTTTCTCTCTTTTTAGGCTCTCTTGTGGATCCAGTATATACATCCATTCTATTGCACAACCACATCATTTCAGATTAAGTACCTTTGGATGCATGCTCAGAAGTAAAATAGATTAGTAACAAGAATTTGTTAGTAATTGCCCTTAGGGTAGTGGTGAAGGAAACAACAATTGGAAGTTTAAATGAAAACTTCAAAGTAGAAACATTTCTTAAGTAATCAATTACATTTCATATAAGTCGTTAAATGCAAGTAATATACTTAAGGCATTTGCTAGAAATATCCAAGTGATAGTTTGACGTGTAACATATAATGTTTTCAATTTCATGCTCATTTCCTACACCTCTCTATTATTCGTTGTTTTGTTGCATGCCATTCTTATGAGGCAGGCCTCTGTTCCTTTCCGTCAGTTAATTATTCTTATGAGGCAGGCCTCTCTTCCTTGCCATTTTCCCAGCAATTTGACCAATTTGTATTTTGTATAGGCACCTTTCTATTTTTCTGAGAGGAGTATGCATCCACCTTCACCATATGCCGTGAACAATCCAGCTATGGAAACGAATGCTTATATACACCGTCATAAGCATACACCAGTTGAAGAGTTTCCAGAAAGACCTGGTGAACCTGAATGCAGTTTCTTCTTAAAAACCGGGGATTGCAAATTTAAATCCCATTGCAAATTTCATCATCCAAAGAACCGGATTACAAAATTACCTCCATGCAACCTAAGTGACAAGGGTCTGCCTTTGAGACCTGTAAGTTATTTTACTCTGATGTCTTAAAACCCTAATGTACACGTCACCAGTTTCTTTGATCTAACATTTAATATCTCGTGAAATTCAGGGCCAGAATGTGTGCACTCATTACAACCGATATGGAATTTGCAAATTTGGACCAGCTTGTAAGTATGACCACCCGATAAACCTACCGCCCCCAACTATGCCTGGACGTTATCAACAATCCTCTCACACAAACTCGGCTAGTATTGAGGAGGCTGGAAGTGGAGGAGCTAGTGATGCAACAATTTAA
Protein sequence

>MS.gene052610.t1

MEPSQQSQSHLASSHHVQHISPVSNHHPEPSYLNQLTQLDDELQNKLDLKDEDGIEEKGSNFEVGDEAAVLEFDKGQECHDDDENVNEKVSTDVDEVSGIDDKGSNFEDDDEKSATVCEKGQGFHQVHDDDGWSGDYDGWNDDNVVSDWIENEVVSGYVDERSNGGAEQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPVWRRNQVFRERAGERDELEERSSQIECKYYSRSGGCKFGKDCKFDHTRGKFSADQVLQLNFLGLPIRLGEKECPYYMCTGSCKFGANCKFNHPDPTSVGGYDSTLGYGNGSSISFQDVSQSSTPPWSSTRKFNETAPFAPIIISPTPGASPRSSDWNGYQAPFYFSERSMHPPSPYAVNNPAMETNAYIHRHKHTPVEEFPERPGEPECSFFLKTGDCKFKSHCKFHHPKNRITKLPPCNLSDKGLPLRPGQNVCTHYNRYGICKFGPACKYDHPINLPPPTMPGRYQQSSHTNSASIEEAGSGGASDATI