Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47623.t1 | XP_013452871.1 | 76.2 | 302 | 40 | 1 | 31 | 300 | 230 | 531 | 4.90E-116 | 427.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47623.t1 | Q9M1S9 | 43.5 | 85 | 48 | 0 | 207 | 291 | 390 | 474 | 1.9e-12 | 74.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47623.t1 | A0A072UAU7 | 76.2 | 302 | 40 | 1 | 31 | 300 | 230 | 531 | 3.5e-116 | 427.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05265 | MS.gene47623 | 0.830439 | 2.94E-55 | -1.69E-46 |
| MS.gene059272 | MS.gene47623 | 0.806973 | 6.34E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47623.t1 | MTR_6g077680 | 76.159 | 302 | 40 | 1 | 31 | 300 | 230 | 531 | 1.88e-145 | 419 |
| MS.gene47623.t1 | MTR_6g077680 | 75.177 | 282 | 38 | 1 | 31 | 280 | 230 | 511 | 3.38e-130 | 384 |
| MS.gene47623.t1 | MTR_6g477680 | 75.185 | 270 | 33 | 1 | 31 | 300 | 214 | 449 | 5.14e-125 | 364 |
| MS.gene47623.t1 | MTR_6g077630 | 88.618 | 123 | 12 | 1 | 179 | 299 | 42 | 164 | 2.63e-72 | 220 |
| MS.gene47623.t1 | MTR_6g079130 | 57.534 | 219 | 81 | 6 | 85 | 299 | 6 | 216 | 2.99e-71 | 219 |
| MS.gene47623.t1 | MTR_6g078990 | 88.333 | 120 | 14 | 0 | 111 | 230 | 125 | 244 | 2.02e-67 | 211 |
| MS.gene47623.t1 | MTR_6g077630 | 91.000 | 100 | 7 | 1 | 179 | 276 | 42 | 141 | 3.04e-58 | 184 |
| MS.gene47623.t1 | MTR_6g078920 | 59.195 | 174 | 55 | 4 | 74 | 246 | 44 | 202 | 8.74e-51 | 167 |
| MS.gene47623.t1 | MTR_6g078940 | 59.589 | 146 | 32 | 1 | 155 | 300 | 6 | 124 | 1.20e-48 | 158 |
| MS.gene47623.t1 | MTR_6g078950 | 85.366 | 41 | 6 | 0 | 248 | 288 | 66 | 106 | 5.73e-17 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47623.t1 | AT3G54710 | 44.048 | 84 | 47 | 0 | 208 | 291 | 391 | 474 | 4.16e-15 | 75.9 |
| MS.gene47623.t1 | AT2G31270 | 39.286 | 84 | 51 | 0 | 208 | 291 | 475 | 558 | 4.94e-12 | 66.6 |
Find 54 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTATGAATATGGGTAATA+AGG | 0.143347 | 6.1:-70249929 | None:intergenic |
| TGAAGAACATATTGAGATTT+TGG | 0.146163 | 6.1:-70246580 | MS.gene47623:CDS |
| GCCATGTGCTTTCACATTCT+TGG | 0.155020 | 6.1:+70248030 | None:intergenic |
| GGGTAATAAGGGTGGTATTT+TGG | 0.225660 | 6.1:-70249917 | MS.gene47623:CDS |
| TGCAAGAAGGTGGTTTCTTC+TGG | 0.252833 | 6.1:-70246534 | MS.gene47623:CDS |
| TAAACCACGGCGCAGACTTT+TGG | 0.280658 | 6.1:+70247743 | None:intergenic |
| CACAGAAAGCAGTGATGATT+TGG | 0.290103 | 6.1:-70247689 | MS.gene47623:CDS |
| TGTCAAGAATGTGTTAGATT+TGG | 0.348709 | 6.1:-70246181 | MS.gene47623:CDS |
| TCCTTCATCATTGTTGGAAC+TGG | 0.372885 | 6.1:-70246798 | MS.gene47623:CDS |
| TGATTCTGTTTCCCCACCTC+AGG | 0.395030 | 6.1:-70247608 | MS.gene47623:CDS |
| TCAACATTCTTTGAATGCAT+TGG | 0.397627 | 6.1:-70246828 | MS.gene47623:CDS |
| AGCTGTTAACTTTCTCAGTC+TGG | 0.410822 | 6.1:+70248105 | None:intergenic |
| TAACAATCCTTCATCATTGT+TGG | 0.422776 | 6.1:-70246804 | MS.gene47623:CDS |
| GCTGAGTTCAATGCAATCTT+CGG | 0.424685 | 6.1:-70249895 | MS.gene47623:CDS |
| TTTGAAAATTATTTCTTGTA+CGG | 0.441954 | 6.1:-70247851 | MS.gene47623:CDS |
| GCTATGAATATGGGTAATAA+GGG | 0.442860 | 6.1:-70249928 | MS.gene47623:CDS |
| TGGAAAAGATTGTGCCAGAC+TGG | 0.444439 | 6.1:-70246560 | MS.gene47623:CDS |
| TTGAAAATTATTTCTTGTAC+GGG | 0.445796 | 6.1:-70247850 | MS.gene47623:CDS |
| ACCAGTTCCAACAATGATGA+AGG | 0.469997 | 6.1:+70246797 | None:intergenic |
| ACCTTCTTGCAAATCCAGTC+TGG | 0.479360 | 6.1:+70246546 | None:intergenic |
| AGAAGGCCAACTTGAAAGGT+TGG | 0.485613 | 6.1:-70249864 | MS.gene47623:CDS |
| ATCCCATGTATCTGACTGGC+TGG | 0.488583 | 6.1:-70248057 | MS.gene47623:CDS |
| CTCTCAGGTGCTGACTGTGC+AGG | 0.492736 | 6.1:+70247808 | None:intergenic |
| CTTGAGAAGGCCAACTTGAA+AGG | 0.494882 | 6.1:-70249868 | MS.gene47623:CDS |
| CTTCTGGAGACACTATGTAC+TGG | 0.525377 | 6.1:-70246518 | MS.gene47623:intron |
| TTCTGTTTCCCCACCTCAGG+AGG | 0.525456 | 6.1:-70247605 | MS.gene47623:intron |
| TTTAGTCCAACCTTTCAAGT+TGG | 0.527528 | 6.1:+70249858 | None:intergenic |
| CGCTGCTAACAGAATGTGGA+GGG | 0.536717 | 6.1:+70247887 | None:intergenic |
| GAAGTGAGCAACAATCTCTC+AGG | 0.538879 | 6.1:+70247793 | None:intergenic |
| ACTGAGAAGCCTCGATCGAA+CGG | 0.541307 | 6.1:+70246155 | None:intergenic |
| AAGAACGTCAATCACAAAAG+AGG | 0.549617 | 6.1:-70246741 | MS.gene47623:CDS |
| TATCCAGCCAGTCAGATACA+TGG | 0.554491 | 6.1:+70248054 | None:intergenic |
| TGTCATCCCATGTATCTGAC+TGG | 0.562829 | 6.1:-70248061 | MS.gene47623:CDS |
| GCCAGACTGGATTTGCAAGA+AGG | 0.566716 | 6.1:-70246547 | MS.gene47623:CDS |
| ATTTGGACTCCGTTCGATCG+AGG | 0.568401 | 6.1:-70246164 | MS.gene47623:CDS |
| GAAAGGTTGGACTAAAGCTA+TGG | 0.572547 | 6.1:-70249851 | MS.gene47623:intron |
| AATCTTCGGTGCTCTTGAGA+AGG | 0.584455 | 6.1:-70249881 | MS.gene47623:CDS |
| ATGAATATGGGTAATAAGGG+TGG | 0.589063 | 6.1:-70249925 | MS.gene47623:CDS |
| CAGGCACATACCTCCTGAGG+TGG | 0.589907 | 6.1:+70247595 | None:intergenic |
| AGACTGGATTTGCAAGAAGG+TGG | 0.592060 | 6.1:-70246544 | MS.gene47623:CDS |
| GGCACATACCTCCTGAGGTG+GGG | 0.594697 | 6.1:+70247597 | None:intergenic |
| TCCTCAGAACATCCTCTGCT+AGG | 0.602169 | 6.1:+70247643 | None:intergenic |
| TCAACGCTGCTAACAGAATG+TGG | 0.603547 | 6.1:+70247883 | None:intergenic |
| ATCCAGCCAGTCAGATACAT+GGG | 0.612236 | 6.1:+70248055 | None:intergenic |
| CTTCTCAGTAATGTGAACAA+AGG | 0.613859 | 6.1:-70246141 | MS.gene47623:CDS |
| ATGCAGGTAGATGAGAACCT+TGG | 0.622672 | 6.1:-70246878 | MS.gene47623:intron |
| AGGCACATACCTCCTGAGGT+GGG | 0.642292 | 6.1:+70247596 | None:intergenic |
| ACCAAGAATGTGAAAGCACA+TGG | 0.648826 | 6.1:-70248031 | MS.gene47623:CDS |
| TACATGTCTAAACCTAGCAG+AGG | 0.662170 | 6.1:-70247655 | MS.gene47623:CDS |
| ACGCTGCTAACAGAATGTGG+AGG | 0.670817 | 6.1:+70247886 | None:intergenic |
| TAGCAGGCACATACCTCCTG+AGG | 0.679751 | 6.1:+70247592 | None:intergenic |
| ACCTAGCAGAGGATGTTCTG+AGG | 0.686822 | 6.1:-70247644 | MS.gene47623:CDS |
| CTGCCCAAAAGTCTGCGCCG+TGG | 0.692943 | 6.1:-70247747 | MS.gene47623:CDS |
| GCTGCTAACAGAATGTGGAG+GGG | 0.693112 | 6.1:+70247888 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTTGTAAATTCTTTA+TGG | - | chr6.1:70246547-70246566 | MS.gene47623:CDS | 10.0% |
| !!! | TAGTGTTTTTTTTTTTTTTT+TGG | - | chr6.1:70247616-70247635 | MS.gene47623:CDS | 10.0% |
| !!! | TTTTACAATAAAAAAGATTA+AGG | + | chr6.1:70249107-70249126 | None:intergenic | 10.0% |
| !! | AATATATTTATGATTATCTG+AGG | - | chr6.1:70247786-70247805 | MS.gene47623:CDS | 15.0% |
| !! | AATTAGTTGAAAATGTATTA+AGG | - | chr6.1:70247729-70247748 | MS.gene47623:CDS | 15.0% |
| !! | ATGTATTAAGGATAATAATA+AGG | - | chr6.1:70247741-70247760 | MS.gene47623:CDS | 15.0% |
| !! | TAAAAAAGAGAAAATGAAAA+AGG | + | chr6.1:70246353-70246372 | None:intergenic | 15.0% |
| !!! | AAGAAATAATTTTCAAATCA+GGG | + | chr6.1:70248202-70248221 | None:intergenic | 15.0% |
| !!! | AATATCAAAGTTTGATTTTA+GGG | + | chr6.1:70248519-70248538 | None:intergenic | 15.0% |
| !!! | TTATCTTTTAAAAATCTCTA+AGG | + | chr6.1:70248693-70248712 | None:intergenic | 15.0% |
| !!! | TTTGAAAATTATTTCTTGTA+CGG | - | chr6.1:70248205-70248224 | MS.gene47623:intron | 15.0% |
| !! | AAATTAACATTCTACAATAC+AGG | + | chr6.1:70247041-70247060 | None:intergenic | 20.0% |
| !! | AAGAAAGATTTATGACAATT+TGG | + | chr6.1:70247018-70247037 | None:intergenic | 20.0% |
| !! | AATCTATCATTAAAAGGAAA+TGG | + | chr6.1:70247586-70247605 | None:intergenic | 20.0% |
| !! | AGAAAGATTTATGACAATTT+GGG | + | chr6.1:70247017-70247036 | None:intergenic | 20.0% |
| !! | ATATTCATGCATTAAAAAAG+AGG | - | chr6.1:70248665-70248684 | MS.gene47623:intron | 20.0% |
| !! | TAAAAGATAATGAACATACT+GGG | - | chr6.1:70248703-70248722 | MS.gene47623:intron | 20.0% |
| !! | TAAAATAAAAACTAGATAGC+AGG | + | chr6.1:70248483-70248502 | None:intergenic | 20.0% |
| !! | TTAAAAGATAATGAACATAC+TGG | - | chr6.1:70248702-70248721 | MS.gene47623:intron | 20.0% |
| !! | TTCCTTAATCTATCATTAAA+AGG | + | chr6.1:70247592-70247611 | None:intergenic | 20.0% |
| !! | TTTAATGATAGATTAAGGAA+GGG | - | chr6.1:70247592-70247611 | MS.gene47623:intron | 20.0% |
| !!! | ATATGTGAACTTAGAATTTT+AGG | - | chr6.1:70246626-70246645 | MS.gene47623:intron | 20.0% |
| !!! | ATTGAATGAATCTAAAACAT+AGG | - | chr6.1:70246472-70246491 | MS.gene47623:intron | 20.0% |
| !!! | CAAGAAATAATTTTCAAATC+AGG | + | chr6.1:70248203-70248222 | None:intergenic | 20.0% |
| !!! | GAATATCAAAGTTTGATTTT+AGG | + | chr6.1:70248520-70248539 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTTTTCTTTACTT+CGG | - | chr6.1:70246312-70246331 | MS.gene47623:intron | 20.0% |
| !!! | TTCCTTTTAATGATAGATTA+AGG | - | chr6.1:70247587-70247606 | MS.gene47623:intron | 20.0% |
| !!! | TTGAAAATTATTTCTTGTAC+GGG | - | chr6.1:70248206-70248225 | MS.gene47623:intron | 20.0% |
| !!! | TTTTAATGATAGATTAAGGA+AGG | - | chr6.1:70247591-70247610 | MS.gene47623:intron | 20.0% |
| ! | AAAAGAGAAAATGAAAAAGG+AGG | + | chr6.1:70246350-70246369 | None:intergenic | 25.0% |
| ! | AAACACAATTACATGTATCA+TGG | - | chr6.1:70249682-70249701 | MS.gene47623:intron | 25.0% |
| ! | AATCTCATACCTAAAGAAAA+TGG | + | chr6.1:70246236-70246255 | None:intergenic | 25.0% |
| ! | ATTATTACTCACACAAACAA+TGG | + | chr6.1:70248066-70248085 | None:intergenic | 25.0% |
| ! | ATTCACCAAATCACAATTAT+AGG | - | chr6.1:70247093-70247112 | MS.gene47623:intron | 25.0% |
| ! | ATTTCATTCATGCTAATAAG+TGG | - | chr6.1:70246833-70246852 | MS.gene47623:CDS | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr6.1:70246460-70246479 | None:intergenic | 25.0% |
| ! | GAATAAACATGAGATTTGAA+CGG | + | chr6.1:70248971-70248990 | None:intergenic | 25.0% |
| ! | GGAAATCCAAAAATTTAAAG+TGG | + | chr6.1:70247389-70247408 | None:intergenic | 25.0% |
| ! | TACATGTATCATGGATATAA+TGG | - | chr6.1:70249691-70249710 | MS.gene47623:intron | 25.0% |
| ! | TACCAGTTAAGTTATATTAG+AGG | - | chr6.1:70246706-70246725 | MS.gene47623:CDS | 25.0% |
| ! | TCTAATATAACTTAACTGGT+AGG | + | chr6.1:70246707-70246726 | None:intergenic | 25.0% |
| ! | TTCCTCTAATATAACTTAAC+TGG | + | chr6.1:70246711-70246730 | None:intergenic | 25.0% |
| !! | TACTTTTCTCTTTCAATACA+TGG | + | chr6.1:70246906-70246925 | None:intergenic | 25.0% |
| !! | TGAAGAACATATTGAGATTT+TGG | - | chr6.1:70249476-70249495 | MS.gene47623:intron | 25.0% |
| !! | TTTTTGCTTATATTTGTGAC+CGG | - | chr6.1:70246495-70246514 | MS.gene47623:intron | 25.0% |
| !! | TTTTTGCTTATATTTGTGAC+CGG | + | chr6.1:70246514-70246495 | None:intergenic | 25.0% |
| !!! | AGAAAGTTTACGAGATTTTT+TGG | - | chr6.1:70247852-70247871 | MS.gene47623:CDS | 25.0% |
| !!! | ATGACATTTTGTTTCGATTA+CGG | - | chr6.1:70247363-70247382 | MS.gene47623:intron | 25.0% |
| !!! | GAAAGTTTACGAGATTTTTT+GGG | - | chr6.1:70247853-70247872 | MS.gene47623:CDS | 25.0% |
| !!! | TTTTTGGAATACGTTATGTT+AGG | - | chr6.1:70247632-70247651 | MS.gene47623:CDS | 25.0% |
| !!! | TTTTTTTTATAGCCCAAAGA+AGG | + | chr6.1:70249663-70249682 | None:intergenic | 25.0% |
| AAAGAAAAGCAGTTGTCAAA+AGG | + | chr6.1:70247900-70247919 | None:intergenic | 30.0% | |
| AATATGCACTTTGACTATAG+AGG | - | chr6.1:70247558-70247577 | MS.gene47623:intron | 30.0% | |
| AATGGAATAATAGAACCTAG+CGG | - | chr6.1:70249709-70249728 | MS.gene47623:intron | 30.0% | |
| ACAATGTTAACATCATTCTC+TGG | + | chr6.1:70246955-70246974 | None:intergenic | 30.0% | |
| CAAAACAGTATCATCAATTG+CGG | + | chr6.1:70247410-70247429 | None:intergenic | 30.0% | |
| CAATGTTAACATCATTCTCT+GGG | + | chr6.1:70246954-70246973 | None:intergenic | 30.0% | |
| CTATAGTCAAAGTGCATATT+TGG | + | chr6.1:70247558-70247577 | None:intergenic | 30.0% | |
| GTAATCGAAACAAAATGTCA+TGG | + | chr6.1:70247364-70247383 | None:intergenic | 30.0% | |
| TAACAATCCTTCATCATTGT+TGG | - | chr6.1:70249252-70249271 | MS.gene47623:intron | 30.0% | |
| TAGGAGTTTCTACAAAATGA+TGG | - | chr6.1:70247499-70247518 | MS.gene47623:intron | 30.0% | |
| TCAACATTCTTTGAATGCAT+TGG | - | chr6.1:70249228-70249247 | MS.gene47623:intron | 30.0% | |
| TCACATAATCAGGAGAATAA+AGG | - | chr6.1:70246755-70246774 | MS.gene47623:CDS | 30.0% | |
| TCTGCCATAATTTCACAAAT+TGG | + | chr6.1:70247281-70247300 | None:intergenic | 30.0% | |
| TGAGCTCTTTCAAAAGATAA+TGG | - | chr6.1:70247191-70247210 | MS.gene47623:intron | 30.0% | |
| TGTCAAGAATGTGTTAGATT+TGG | - | chr6.1:70249875-70249894 | MS.gene47623:CDS | 30.0% | |
| TTCCACCTATAATTGTGATT+TGG | + | chr6.1:70247101-70247120 | None:intergenic | 30.0% | |
| TTGTACCTTTCAATTTATCC+TGG | - | chr6.1:70248555-70248574 | MS.gene47623:intron | 30.0% | |
| ! | AAAGTGCATATTTGGTTTCA+CGG | + | chr6.1:70247550-70247569 | None:intergenic | 30.0% |
| ! | AGCAGAACTTTTGATGTTAT+TGG | - | chr6.1:70249743-70249762 | MS.gene47623:intron | 30.0% |
| ! | AGTTCACAAGTATATGCTTT+TGG | - | chr6.1:70248993-70249012 | MS.gene47623:intron | 30.0% |
| ! | ATGTTAACATTGTGTTACTC+TGG | - | chr6.1:70246962-70246981 | MS.gene47623:intron | 30.0% |
| ! | ATTTTGCATAAGTTACGCTT+AGG | - | chr6.1:70247480-70247499 | MS.gene47623:intron | 30.0% |
| ! | GATACTGTTTTGTGTATGTT+TGG | - | chr6.1:70247418-70247437 | MS.gene47623:intron | 30.0% |
| ! | GTTTAGTCGATTTCTTAGAT+TGG | - | chr6.1:70248809-70248828 | MS.gene47623:intron | 30.0% |
| ! | TTTTGACATCTCAAGTAGAA+CGG | + | chr6.1:70246574-70246593 | None:intergenic | 30.0% |
| ! | TTTTGTGATTGACGTTCTTT+TGG | + | chr6.1:70249314-70249333 | None:intergenic | 30.0% |
| !! | ATATTAGAGGAAAGCATTGA+AGG | - | chr6.1:70246719-70246738 | MS.gene47623:CDS | 30.0% |
| !! | TAGAGTATCAGTCTCTTTTA+GGG | - | chr6.1:70249599-70249618 | MS.gene47623:intron | 30.0% |
| !! | TTACGGCCACTTTAAATTTT+TGG | - | chr6.1:70247380-70247399 | MS.gene47623:intron | 30.0% |
| !! | TTAGAGTATCAGTCTCTTTT+AGG | - | chr6.1:70249598-70249617 | MS.gene47623:intron | 30.0% |
| !! | TTTGACAACTGCTTTTCTTT+GGG | - | chr6.1:70247900-70247919 | MS.gene47623:CDS | 30.0% |
| !! | TTTTCTGAAAAGAATGACCA+AGG | + | chr6.1:70249198-70249217 | None:intergenic | 30.0% |
| !! | TTTTGACAACTGCTTTTCTT+TGG | - | chr6.1:70247899-70247918 | MS.gene47623:CDS | 30.0% |
| !!! | AGCTCTGATTACTCTTTTTT+TGG | - | chr6.1:70247218-70247237 | MS.gene47623:intron | 30.0% |
| !!! | GATTTTTTGGGTACTAAATC+AGG | - | chr6.1:70247865-70247884 | MS.gene47623:CDS | 30.0% |
| !!! | GCTCTGATTACTCTTTTTTT+GGG | - | chr6.1:70247219-70247238 | MS.gene47623:intron | 30.0% |
| !!! | TCTTTTTTATATACACCCTC+CGG | - | chr6.1:70246364-70246383 | MS.gene47623:intron | 30.0% |
| AAGAACGTCAATCACAAAAG+AGG | - | chr6.1:70249315-70249334 | MS.gene47623:intron | 35.0% | |
| ACCTTTCAATTTATCCTGGA+TGG | - | chr6.1:70248559-70248578 | MS.gene47623:intron | 35.0% | |
| ACGGCCAATTTGTGAAATTA+TGG | - | chr6.1:70247274-70247293 | MS.gene47623:intron | 35.0% | |
| ATAATTTCACAAATTGGCCG+TGG | + | chr6.1:70247275-70247294 | None:intergenic | 35.0% | |
| ATGAACTTTCAGCCTTCTTT+GGG | - | chr6.1:70249648-70249667 | MS.gene47623:intron | 35.0% | |
| ATGAATATGGGTAATAAGGG+TGG | - | chr6.1:70246131-70246150 | MS.gene47623:CDS | 35.0% | |
| CACCAAATCACAATTATAGG+TGG | - | chr6.1:70247096-70247115 | MS.gene47623:intron | 35.0% | |
| CTTCTCAGTAATGTGAACAA+AGG | - | chr6.1:70249915-70249934 | MS.gene47623:CDS | 35.0% | |
| CTTGACACTGCAAATATAAC+AGG | + | chr6.1:70249862-70249881 | None:intergenic | 35.0% | |
| GATTTGTGATTCCATATGGT+AGG | - | chr6.1:70247688-70247707 | MS.gene47623:CDS | 35.0% | |
| GTTTACATCTACCTACCATA+TGG | + | chr6.1:70247702-70247721 | None:intergenic | 35.0% | |
| TCCATCCAGGATAAATTGAA+AGG | + | chr6.1:70248563-70248582 | None:intergenic | 35.0% | |
| TCTAGATTGACGACAAGAAA+GGG | - | chr6.1:70248881-70248900 | MS.gene47623:intron | 35.0% | |
| TTCTAGATTGACGACAAGAA+AGG | - | chr6.1:70248880-70248899 | MS.gene47623:intron | 35.0% | |
| ! | ATGGTCTCTCCATTTTCTTT+AGG | - | chr6.1:70246224-70246243 | MS.gene47623:intron | 35.0% |
| ! | CATGTCGAAGATTTTGTGTA+TGG | - | chr6.1:70248736-70248755 | MS.gene47623:intron | 35.0% |
| ! | CTGTGATTTGTGATTCCATA+TGG | - | chr6.1:70247684-70247703 | MS.gene47623:CDS | 35.0% |
| ! | GCTCTTTCAAAAGATAATGG+TGG | - | chr6.1:70247194-70247213 | MS.gene47623:intron | 35.0% |
| ! | TTTAGTCCAACCTTTCAAGT+TGG | + | chr6.1:70246201-70246220 | None:intergenic | 35.0% |
| !! | GCCAACTTGTTGTTAAAACA+TGG | + | chr6.1:70247128-70247147 | None:intergenic | 35.0% |
| !! | GTTAATTTGTTTCTCGATGC+AGG | - | chr6.1:70249162-70249181 | MS.gene47623:intron | 35.0% |
| !!! | GCCATGTTTTAACAACAAGT+TGG | - | chr6.1:70247124-70247143 | MS.gene47623:intron | 35.0% |
| AATAGAACCTAGCGGTTTGA+TGG | - | chr6.1:70249717-70249736 | MS.gene47623:intron | 40.0% | |
| ACCAGTTCCAACAATGATGA+AGG | + | chr6.1:70249262-70249281 | None:intergenic | 40.0% | |
| ACCTAATATCATACACCCTC+CGG | + | chr6.1:70246517-70246536 | None:intergenic | 40.0% | |
| ACTAATCTTGTCCTCCCAAT+AGG | - | chr6.1:70249447-70249466 | MS.gene47623:intron | 40.0% | |
| AGACATGCACTCACATAATC+AGG | - | chr6.1:70246745-70246764 | MS.gene47623:CDS | 40.0% | |
| AGCATAGAGTACATGAGCAT+AGG | + | chr6.1:70247666-70247685 | None:intergenic | 40.0% | |
| AGCTGTTAACTTTCTCAGTC+TGG | + | chr6.1:70247954-70247973 | None:intergenic | 40.0% | |
| ATTTGAACGGAGCAAGAACA+TGG | + | chr6.1:70248958-70248977 | None:intergenic | 40.0% | |
| CACAGAAAGCAGTGATGATT+TGG | - | chr6.1:70248367-70248386 | MS.gene47623:intron | 40.0% | |
| CACCCTCATCTTTCACAAAT+TGG | + | chr6.1:70247341-70247360 | None:intergenic | 40.0% | |
| CATCTTTCACAAATTGGCCA+TGG | + | chr6.1:70247335-70247354 | None:intergenic | 40.0% | |
| CATGAACTTTCAGCCTTCTT+TGG | - | chr6.1:70249647-70249666 | MS.gene47623:intron | 40.0% | |
| GAAAGGTTGGACTAAAGCTA+TGG | - | chr6.1:70246205-70246224 | MS.gene47623:intron | 40.0% | |
| GAGGCAAAGCATGTTATACT+TGG | - | chr6.1:70247805-70247824 | MS.gene47623:CDS | 40.0% | |
| GCTGAGTTCAATGCAATCTT+CGG | - | chr6.1:70246161-70246180 | MS.gene47623:CDS | 40.0% | |
| GGATTCCCATTCATGTTTAG+CGG | - | chr6.1:70246877-70246896 | MS.gene47623:intron | 40.0% | |
| GGATTCCGCTAAACATGAAT+GGG | + | chr6.1:70246885-70246904 | None:intergenic | 40.0% | |
| GGCCAATTTGTGAAAGATGA+GGG | - | chr6.1:70247336-70247355 | MS.gene47623:intron | 40.0% | |
| GTTAACATCATTCTCTGGGT+TGG | + | chr6.1:70246950-70246969 | None:intergenic | 40.0% | |
| GTTCTTCAGCTTCTCCTATT+GGG | + | chr6.1:70249464-70249483 | None:intergenic | 40.0% | |
| TAATAAGTGGAACCATGCAG+AGG | - | chr6.1:70246846-70246865 | MS.gene47623:CDS | 40.0% | |
| TACATGTCTAAACCTAGCAG+AGG | - | chr6.1:70248401-70248420 | MS.gene47623:intron | 40.0% | |
| TCCTTCATCATTGTTGGAAC+TGG | - | chr6.1:70249258-70249277 | MS.gene47623:intron | 40.0% | |
| TGCTTATATTTGTGACCGGA+GGG | - | chr6.1:70246499-70246518 | MS.gene47623:intron | 40.0% | |
| TGCTTATATTTGTGACCGGA+GGG | + | chr6.1:70246518-70246499 | None:intergenic | 40.0% | |
| TGGATTCCGCTAAACATGAA+TGG | + | chr6.1:70246886-70246905 | None:intergenic | 40.0% | |
| TGGCCAATTTGTGAAAGATG+AGG | - | chr6.1:70247335-70247354 | MS.gene47623:intron | 40.0% | |
| TGTAGAAAGAAGCAAGCAGA+AGG | - | chr6.1:70248088-70248107 | MS.gene47623:CDS | 40.0% | |
| TGTTCTTCAGCTTCTCCTAT+TGG | + | chr6.1:70249465-70249484 | None:intergenic | 40.0% | |
| TTGCTTATATTTGTGACCGG+AGG | - | chr6.1:70246498-70246517 | MS.gene47623:intron | 40.0% | |
| TTGCTTATATTTGTGACCGG+AGG | + | chr6.1:70246517-70246498 | None:intergenic | 40.0% | |
| TTGTGTATGGTTGTCAGCAA+TGG | - | chr6.1:70248749-70248768 | MS.gene47623:intron | 40.0% | |
| TTTGAACGGAGCAAGAACAT+GGG | + | chr6.1:70248957-70248976 | None:intergenic | 40.0% | |
| ! | ACCAAGAATGTGAAAGCACA+TGG | - | chr6.1:70248025-70248044 | MS.gene47623:CDS | 40.0% |
| ! | CTGATACTCTAAAAGCACGA+AGG | + | chr6.1:70249590-70249609 | None:intergenic | 40.0% |
| ! | CTTTTTGCAGGCTTAAACCA+CGG | + | chr6.1:70248329-70248348 | None:intergenic | 40.0% |
| ! | GGGTAATAAGGGTGGTATTT+TGG | - | chr6.1:70246139-70246158 | MS.gene47623:CDS | 40.0% |
| ! | TAGTTTGAAGTCAACCCCAA+GGG | + | chr6.1:70249792-70249811 | None:intergenic | 40.0% |
| ! | TGAGTTTTCCGAAATGAAGG+TGG | + | chr6.1:70247527-70247546 | None:intergenic | 40.0% |
| AAGAGCTCACTAGTGACAGT+AGG | + | chr6.1:70247180-70247199 | None:intergenic | 45.0% | |
| ACCTTCTTGCAAATCCAGTC+TGG | + | chr6.1:70249513-70249532 | None:intergenic | 45.0% | |
| AGAAGGCCAACTTGAAAGGT+TGG | - | chr6.1:70246192-70246211 | MS.gene47623:intron | 45.0% | |
| AGACTGGATTTGCAAGAAGG+TGG | - | chr6.1:70249512-70249531 | MS.gene47623:intron | 45.0% | |
| AGAGCTCACTAGTGACAGTA+GGG | + | chr6.1:70247179-70247198 | None:intergenic | 45.0% | |
| ATCCAAAGTCAACCTCTGCA+TGG | + | chr6.1:70246861-70246880 | None:intergenic | 45.0% | |
| ATCCAGCCAGTCAGATACAT+GGG | + | chr6.1:70248004-70248023 | None:intergenic | 45.0% | |
| ATGCAGGTAGATGAGAACCT+TGG | - | chr6.1:70249178-70249197 | MS.gene47623:intron | 45.0% | |
| CTTGAGAAGGCCAACTTGAA+AGG | - | chr6.1:70246188-70246207 | MS.gene47623:intron | 45.0% | |
| GAAGTGAGCAACAATCTCTC+AGG | + | chr6.1:70248266-70248285 | None:intergenic | 45.0% | |
| GCCATGTGCTTTCACATTCT+TGG | + | chr6.1:70248029-70248048 | None:intergenic | 45.0% | |
| GCTGTGTCAAACAGTAGAGA+TGG | - | chr6.1:70248831-70248850 | MS.gene47623:intron | 45.0% | |
| GTTGTGAGCCAAAATCCCTT+GGG | - | chr6.1:70249774-70249793 | MS.gene47623:intron | 45.0% | |
| TATCCAGCCAGTCAGATACA+TGG | + | chr6.1:70248005-70248024 | None:intergenic | 45.0% | |
| TATTGAAGAGCTCACTGCCA+CGG | - | chr6.1:70247255-70247274 | MS.gene47623:intron | 45.0% | |
| TCAACGCTGCTAACAGAATG+TGG | + | chr6.1:70248176-70248195 | None:intergenic | 45.0% | |
| TGCAAGAAGGTGGTTTCTTC+TGG | - | chr6.1:70249522-70249541 | MS.gene47623:intron | 45.0% | |
| TGCTATTCCATCAAACCGCT+AGG | + | chr6.1:70249727-70249746 | None:intergenic | 45.0% | |
| TGGAAAAGATTGTGCCAGAC+TGG | - | chr6.1:70249496-70249515 | MS.gene47623:intron | 45.0% | |
| TGTCATCCCATGTATCTGAC+TGG | - | chr6.1:70247995-70248014 | MS.gene47623:intron | 45.0% | |
| TGTTGTGAGCCAAAATCCCT+TGG | - | chr6.1:70249773-70249792 | MS.gene47623:intron | 45.0% | |
| TTATGGCAGACACACTGTGT+TGG | - | chr6.1:70247291-70247310 | MS.gene47623:intron | 45.0% | |
| TTGTGAGCCAAAATCCCTTG+GGG | - | chr6.1:70249775-70249794 | MS.gene47623:intron | 45.0% | |
| ! | AACCATGCAGAGGTTGACTT+TGG | - | chr6.1:70246856-70246875 | MS.gene47623:CDS | 45.0% |
| ! | AAGTCAACCCCAAGGGATTT+TGG | + | chr6.1:70249785-70249804 | None:intergenic | 45.0% |
| ! | AAGTCGAGCACTCTTTTTGC+AGG | + | chr6.1:70248341-70248360 | None:intergenic | 45.0% |
| ! | ACCGGAGGGTGTATGATATT+AGG | - | chr6.1:70246513-70246532 | MS.gene47623:intron | 45.0% |
| ! | AGACTTTTTGACCACTGCCA+TGG | - | chr6.1:70247315-70247334 | MS.gene47623:intron | 45.0% |
| ! | CGGTGAGTTTTCCGAAATGA+AGG | + | chr6.1:70247530-70247549 | None:intergenic | 45.0% |
| ! | CTAGTTTGAAGTCAACCCCA+AGG | + | chr6.1:70249793-70249812 | None:intergenic | 45.0% |
| ! | CTTCTGGAGACACTATGTAC+TGG | - | chr6.1:70249538-70249557 | MS.gene47623:intron | 45.0% |
| !! | AATCTTCGGTGCTCTTGAGA+AGG | - | chr6.1:70246175-70246194 | MS.gene47623:CDS | 45.0% |
| !! | TGATGGTGCCACCTTCATTT+CGG | - | chr6.1:70247516-70247535 | MS.gene47623:intron | 45.0% |
| ACCTAGCAGAGGATGTTCTG+AGG | - | chr6.1:70248412-70248431 | MS.gene47623:intron | 50.0% | |
| ACGCTGCTAACAGAATGTGG+AGG | + | chr6.1:70248173-70248192 | None:intergenic | 50.0% | |
| ACTGAGAAGCCTCGATCGAA+CGG | + | chr6.1:70249904-70249923 | None:intergenic | 50.0% | |
| ATCCCATGTATCTGACTGGC+TGG | - | chr6.1:70247999-70248018 | MS.gene47623:intron | 50.0% | |
| ATTTGGACTCCGTTCGATCG+AGG | - | chr6.1:70249892-70249911 | MS.gene47623:CDS | 50.0% | |
| CGCTGCTAACAGAATGTGGA+GGG | + | chr6.1:70248172-70248191 | None:intergenic | 50.0% | |
| CTTCAGCTTCTCCTATTGGG+AGG | + | chr6.1:70249461-70249480 | None:intergenic | 50.0% | |
| GCCAGACTGGATTTGCAAGA+AGG | - | chr6.1:70249509-70249528 | MS.gene47623:intron | 50.0% | |
| GCTGCTAACAGAATGTGGAG+GGG | + | chr6.1:70248171-70248190 | None:intergenic | 50.0% | |
| TCACAAATTGGCCATGGCAG+TGG | + | chr6.1:70247329-70247348 | None:intergenic | 50.0% | |
| TCCTCAGAACATCCTCTGCT+AGG | + | chr6.1:70248416-70248435 | None:intergenic | 50.0% | |
| TCTTTGCAAGCTCTCCATCC+AGG | + | chr6.1:70248576-70248595 | None:intergenic | 50.0% | |
| TGATTCTGTTTCCCCACCTC+AGG | - | chr6.1:70248448-70248467 | MS.gene47623:intron | 50.0% | |
| ! | AAACCACGGCGCAGACTTTT+GGG | + | chr6.1:70248315-70248334 | None:intergenic | 50.0% |
| ! | TAAACCACGGCGCAGACTTT+TGG | + | chr6.1:70248316-70248335 | None:intergenic | 50.0% |
| AGGCACATACCTCCTGAGGT+GGG | + | chr6.1:70248463-70248482 | None:intergenic | 55.0% | |
| TAGCAGGCACATACCTCCTG+AGG | + | chr6.1:70248467-70248486 | None:intergenic | 55.0% | |
| TTCTGTTTCCCCACCTCAGG+AGG | - | chr6.1:70248451-70248470 | MS.gene47623:intron | 55.0% | |
| CAGGCACATACCTCCTGAGG+TGG | + | chr6.1:70248464-70248483 | None:intergenic | 60.0% | |
| GGCACATACCTCCTGAGGTG+GGG | + | chr6.1:70248462-70248481 | None:intergenic | 60.0% | |
| !! | CTCTCAGGTGCTGACTGTGC+AGG | + | chr6.1:70248251-70248270 | None:intergenic | 60.0% |
| CTGCCCAAAAGTCTGCGCCG+TGG | - | chr6.1:70248309-70248328 | MS.gene47623:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 70246131 | 70249947 | 70246131 | ID=MS.gene47623 |
| chr6.1 | mRNA | 70246131 | 70249947 | 70246131 | ID=MS.gene47623.t1;Parent=MS.gene47623 |
| chr6.1 | exon | 70249852 | 70249947 | 70249852 | ID=MS.gene47623.t1.exon1;Parent=MS.gene47623.t1 |
| chr6.1 | CDS | 70249852 | 70249947 | 70249852 | ID=cds.MS.gene47623.t1;Parent=MS.gene47623.t1 |
| chr6.1 | exon | 70248021 | 70248141 | 70248021 | ID=MS.gene47623.t1.exon2;Parent=MS.gene47623.t1 |
| chr6.1 | CDS | 70248021 | 70248141 | 70248021 | ID=cds.MS.gene47623.t1;Parent=MS.gene47623.t1 |
| chr6.1 | exon | 70247606 | 70247925 | 70247606 | ID=MS.gene47623.t1.exon3;Parent=MS.gene47623.t1 |
| chr6.1 | CDS | 70247606 | 70247925 | 70247606 | ID=cds.MS.gene47623.t1;Parent=MS.gene47623.t1 |
| chr6.1 | exon | 70246693 | 70246894 | 70246693 | ID=MS.gene47623.t1.exon4;Parent=MS.gene47623.t1 |
| chr6.1 | CDS | 70246693 | 70246894 | 70246693 | ID=cds.MS.gene47623.t1;Parent=MS.gene47623.t1 |
| chr6.1 | exon | 70246519 | 70246609 | 70246519 | ID=MS.gene47623.t1.exon5;Parent=MS.gene47623.t1 |
| chr6.1 | CDS | 70246519 | 70246609 | 70246519 | ID=cds.MS.gene47623.t1;Parent=MS.gene47623.t1 |
| chr6.1 | exon | 70246131 | 70246203 | 70246131 | ID=MS.gene47623.t1.exon6;Parent=MS.gene47623.t1 |
| chr6.1 | CDS | 70246131 | 70246203 | 70246131 | ID=cds.MS.gene47623.t1;Parent=MS.gene47623.t1 |
| Gene Sequence |
| Protein sequence |
