Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47785.t1 | XP_013448645.1 | 77.9 | 340 | 73 | 2 | 1 | 339 | 1 | 339 | 3.50E-110 | 408.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47785.t1 | A0A072TZ05 | 77.9 | 340 | 73 | 2 | 1 | 339 | 1 | 339 | 2.5e-110 | 408.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47785 | MS.gene009653 | PPI |
| MS.gene98045 | MS.gene47785 | PPI |
| MS.gene47785 | MS.gene049594 | PPI |
| MS.gene53889 | MS.gene47785 | PPI |
| MS.gene47785 | MS.gene05127 | PPI |
| MS.gene26246 | MS.gene47785 | PPI |
| MS.gene017247 | MS.gene47785 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47785.t1 | MTR_7g056407 | 91.471 | 340 | 27 | 2 | 1 | 339 | 1 | 339 | 0.0 | 512 |
| MS.gene47785.t1 | MTR_3g065180 | 72.701 | 348 | 78 | 9 | 1 | 339 | 1 | 340 | 3.46e-152 | 431 |
| MS.gene47785.t1 | MTR_8g013650 | 71.698 | 53 | 15 | 0 | 287 | 339 | 182 | 234 | 2.97e-25 | 102 |
| MS.gene47785.t1 | MTR_4g132760 | 43.411 | 129 | 41 | 3 | 219 | 339 | 113 | 217 | 1.42e-23 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47785.t1 | AT3G07120 | 35.733 | 375 | 190 | 10 | 1 | 339 | 1 | 360 | 3.38e-57 | 189 |
| MS.gene47785.t1 | AT3G25030 | 46.512 | 129 | 45 | 3 | 211 | 339 | 146 | 250 | 9.28e-29 | 112 |
| MS.gene47785.t1 | AT3G25030 | 35.556 | 90 | 54 | 2 | 14 | 100 | 28 | 116 | 5.07e-11 | 62.8 |
| MS.gene47785.t1 | AT3G25030 | 46.512 | 129 | 45 | 3 | 211 | 339 | 146 | 250 | 9.28e-29 | 112 |
| MS.gene47785.t1 | AT3G25030 | 35.556 | 90 | 54 | 2 | 14 | 100 | 28 | 116 | 5.07e-11 | 62.8 |
| MS.gene47785.t1 | AT3G25030 | 46.512 | 129 | 45 | 3 | 211 | 339 | 146 | 250 | 9.28e-29 | 112 |
| MS.gene47785.t1 | AT3G25030 | 35.556 | 90 | 54 | 2 | 14 | 100 | 28 | 116 | 5.07e-11 | 62.8 |
| MS.gene47785.t1 | AT3G25030 | 46.512 | 129 | 45 | 3 | 211 | 339 | 106 | 210 | 1.26e-28 | 110 |
| MS.gene47785.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 158 | 256 | 5.02e-27 | 107 |
| MS.gene47785.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 158 | 256 | 5.13e-27 | 107 |
| MS.gene47785.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 158 | 256 | 5.13e-27 | 107 |
| MS.gene47785.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 161 | 259 | 5.93e-27 | 107 |
| MS.gene47785.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 161 | 259 | 5.93e-27 | 107 |
| MS.gene47785.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 161 | 259 | 5.93e-27 | 107 |
| MS.gene47785.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 161 | 259 | 5.93e-27 | 107 |
| MS.gene47785.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 167 | 265 | 9.06e-27 | 107 |
| MS.gene47785.t1 | AT4G03965 | 43.119 | 109 | 53 | 3 | 232 | 339 | 109 | 209 | 1.29e-21 | 91.7 |
| MS.gene47785.t1 | AT4G22250 | 45.536 | 112 | 42 | 4 | 231 | 339 | 119 | 214 | 1.47e-20 | 89.0 |
| MS.gene47785.t1 | AT1G62370 | 55.102 | 49 | 22 | 0 | 291 | 339 | 156 | 204 | 6.35e-17 | 78.6 |
Find 93 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTCTACTGTTAGGATTT+TGG | 0.123677 | 7.4:-47203334 | None:intergenic |
| GTCTACAAGCGTTCGATTCT+TGG | 0.269402 | 7.4:-47201926 | None:intergenic |
| GTTGGTCTCGTCTTCTTTGA+TGG | 0.313588 | 7.4:-47201950 | None:intergenic |
| GCAGCAGAGGTGGATGCTTC+AGG | 0.335620 | 7.4:+47203758 | MS.gene47785:CDS |
| ACTTGCTGGAGGAGACTGAT+AGG | 0.350211 | 7.4:+47203810 | MS.gene47785:CDS |
| AAGGGAGGCAGTGGCAGCGC+AGG | 0.359534 | 7.4:+47203715 | MS.gene47785:CDS |
| GGCAGTGGCAGCGCAGGAGG+CGG | 0.372743 | 7.4:+47203721 | MS.gene47785:CDS |
| AGAGACAGGGAGGGCACTTT+CGG | 0.384237 | 7.4:+47203691 | MS.gene47785:CDS |
| GAGTCGAATCTTGTCCTTGA+AGG | 0.385931 | 7.4:-47203252 | None:intergenic |
| CCACTTGGTGAGTCATGGAT+TGG | 0.390907 | 7.4:-47203424 | None:intergenic |
| CTGCATCGTCGTGGTGAGTT+TGG | 0.391393 | 7.4:-47203391 | None:intergenic |
| AGAAGCTGCTGCAGCAGCAG+AGG | 0.398231 | 7.4:+47203745 | MS.gene47785:CDS |
| TCTACAAGCGTTCGATTCTT+GGG | 0.400963 | 7.4:-47201925 | None:intergenic |
| GACTGATAGGGAGATGGGAT+TGG | 0.406569 | 7.4:+47203823 | MS.gene47785:CDS |
| GATGTCACTAATGGACTTGC+TGG | 0.407185 | 7.4:+47203796 | MS.gene47785:CDS |
| TCCAATGATGATGTCACTAA+TGG | 0.408666 | 7.4:+47203787 | MS.gene47785:CDS |
| TGGATAGGAATATCTGAAGT+TGG | 0.409983 | 7.4:-47203314 | None:intergenic |
| GGAGGCAGTGGCAGCGCAGG+AGG | 0.411392 | 7.4:+47203718 | MS.gene47785:CDS |
| AACCGTCGAGAGAAGTTTGC+TGG | 0.413798 | 7.4:+47201832 | MS.gene47785:CDS |
| AAGATCTTGGAAAGCCTTCA+AGG | 0.430697 | 7.4:+47203238 | MS.gene47785:intron |
| TTTCTTGTTGTCATCATCGT+CGG | 0.432780 | 7.4:-47203666 | None:intergenic |
| TCCATTAGTGACATCATCAT+TGG | 0.437375 | 7.4:-47203788 | None:intergenic |
| AGCTGCTGCAGCAGCAGAGG+TGG | 0.440857 | 7.4:+47203748 | MS.gene47785:CDS |
| GAAAGTGCCCTCCCTGTCTC+TGG | 0.444680 | 7.4:-47203689 | None:intergenic |
| GATGTGTTCAAGGGAGCTTA+TGG | 0.447756 | 7.4:+47204006 | MS.gene47785:CDS |
| CTTGTGGCCACAGTTTCTGC+AGG | 0.450829 | 7.4:+47203984 | MS.gene47785:CDS |
| GTTCGATTCTTGGGAGGTGA+TGG | 0.474072 | 7.4:-47201916 | None:intergenic |
| TTGGGAGGTGATGGTCGGTT+AGG | 0.476094 | 7.4:-47201907 | None:intergenic |
| GTTTCTGCAGGATGTGTTCA+AGG | 0.476417 | 7.4:+47203996 | MS.gene47785:CDS |
| TTCTTGTTGTCATCATCGTC+GGG | 0.477334 | 7.4:-47203665 | None:intergenic |
| TCAAACGCACTGGCTCTACT+TGG | 0.479715 | 7.4:+47203273 | MS.gene47785:CDS |
| ACTTTCGGCAAGGGAGGCAG+TGG | 0.480490 | 7.4:+47203706 | MS.gene47785:CDS |
| CGTCGTGGTGAGTTTGGATT+CGG | 0.481734 | 7.4:-47203385 | None:intergenic |
| AGGGAGGGCACTTTCGGCAA+GGG | 0.484149 | 7.4:+47203697 | MS.gene47785:CDS |
| AAGGGAGCTTATGGTGGCTA+AGG | 0.488894 | 7.4:+47204015 | MS.gene47785:CDS |
| CACTTGGTGAGTCATGGATT+GGG | 0.492054 | 7.4:-47203423 | None:intergenic |
| TGGTCTAGTGGCCGGAGCAT+TGG | 0.501053 | 7.4:-47203471 | None:intergenic |
| GACAACAAGAAACCAGAGAC+AGG | 0.501669 | 7.4:+47203677 | MS.gene47785:CDS |
| TATTTGCATGGTGAAGCATA+AGG | 0.513921 | 7.4:+47203946 | MS.gene47785:CDS |
| ATCGGAAAAGTCCAATGCTC+CGG | 0.515571 | 7.4:+47203460 | MS.gene47785:CDS |
| GGAGGAGACTGATAGGGAGA+TGG | 0.517088 | 7.4:+47203817 | MS.gene47785:CDS |
| GTCGTCCACTTGGTGAGTCA+TGG | 0.518356 | 7.4:-47203429 | None:intergenic |
| GTGAACTGTGGTCTAGTGGC+CGG | 0.520905 | 7.4:-47203479 | None:intergenic |
| AGATGGGATTGGAAGGATCA+AGG | 0.521559 | 7.4:+47203834 | MS.gene47785:CDS |
| CCAGAAAACTCCTCTGGCGG+AGG | 0.528261 | 7.4:+47203536 | MS.gene47785:CDS |
| GAATTTCTTCGTGAGAGTTG+CGG | 0.530210 | 7.4:-47203569 | None:intergenic |
| GAATCACCAGAAAACTCCTC+TGG | 0.532041 | 7.4:+47203530 | MS.gene47785:CDS |
| GAGGAGACTGATAGGGAGAT+GGG | 0.534352 | 7.4:+47203818 | MS.gene47785:CDS |
| CAGGGAGGGCACTTTCGGCA+AGG | 0.535913 | 7.4:+47203696 | MS.gene47785:CDS |
| GAATGTGAAGATGATGAGGA+TGG | 0.549427 | 7.4:+47203896 | MS.gene47785:CDS |
| CGGCTCTGATGACACATTGG+TGG | 0.553152 | 7.4:-47203591 | None:intergenic |
| GAGGGCACTTTCGGCAAGGG+AGG | 0.557626 | 7.4:+47203700 | MS.gene47785:CDS |
| ATGGGTCAAGGTCGTCCACT+TGG | 0.562504 | 7.4:-47203439 | None:intergenic |
| GATTCTTGGGAGGTGATGGT+CGG | 0.565672 | 7.4:-47201912 | None:intergenic |
| ATTTGCATGGTGAAGCATAA+GGG | 0.569184 | 7.4:+47203947 | MS.gene47785:CDS |
| GATAGGGAGATGGGATTGGA+AGG | 0.574708 | 7.4:+47203827 | MS.gene47785:CDS |
| ACTACACGTCCTCGGTGAAA+CGG | 0.574720 | 7.4:-47203611 | None:intergenic |
| GCAGAGGTGGATGCTTCAGG+AGG | 0.578582 | 7.4:+47203761 | MS.gene47785:CDS |
| CTGCAGAAACTGTGGCCACA+AGG | 0.579057 | 7.4:-47203983 | None:intergenic |
| ATTAGTGACATCATCATTGG+AGG | 0.583297 | 7.4:-47203785 | None:intergenic |
| AGTGGACGACCTTGACCCAT+CGG | 0.587643 | 7.4:+47203442 | MS.gene47785:CDS |
| CTTGCTGGAGGAGACTGATA+GGG | 0.588347 | 7.4:+47203811 | MS.gene47785:CDS |
| TTTCTGCAGGATGTGTTCAA+GGG | 0.591914 | 7.4:+47203997 | MS.gene47785:CDS |
| TAAAAGTCACTACACGTCCT+CGG | 0.592014 | 7.4:-47203619 | None:intergenic |
| AATACAACAAGTCTCTTCCA+TGG | 0.592393 | 7.4:-47203927 | None:intergenic |
| CAGAGAGACGTGTGGACATG+CGG | 0.594260 | 7.4:-47203505 | None:intergenic |
| AAGATTCGACTCAAACGCAC+TGG | 0.596635 | 7.4:+47203263 | MS.gene47785:CDS |
| AGGGAGCTTATGGTGGCTAA+GGG | 0.598389 | 7.4:+47204016 | MS.gene47785:CDS |
| AGAGACTTGTTGTATTTGCA+TGG | 0.599875 | 7.4:+47203934 | MS.gene47785:CDS |
| TTCTTCGTGAGAGTTGCGGC+CGG | 0.611845 | 7.4:-47203565 | None:intergenic |
| CCGGAGATTTCCTCCGCCAG+AGG | 0.617384 | 7.4:-47203546 | None:intergenic |
| AACACATCCTGCAGAAACTG+TGG | 0.617945 | 7.4:-47203991 | None:intergenic |
| CAAGAAACCAGAGACAGGGA+GGG | 0.618736 | 7.4:+47203682 | MS.gene47785:CDS |
| AGCCAGCAAACTTCTCTCGA+CGG | 0.619798 | 7.4:-47201834 | None:intergenic |
| GCGAGTGAACTGTGGTCTAG+TGG | 0.621980 | 7.4:-47203483 | None:intergenic |
| ACAAGAAACCAGAGACAGGG+AGG | 0.622066 | 7.4:+47203681 | MS.gene47785:CDS |
| TGAGGATGGAGAAGGTGCCA+TGG | 0.630424 | 7.4:+47203910 | MS.gene47785:CDS |
| GTCACTAATGGACTTGCTGG+AGG | 0.632385 | 7.4:+47203799 | MS.gene47785:CDS |
| CCTCTGGCGGAGGAAATCTC+CGG | 0.633622 | 7.4:+47203546 | MS.gene47785:CDS |
| CAGAGGTGGATGCTTCAGGA+GGG | 0.637047 | 7.4:+47203762 | MS.gene47785:CDS |
| TCACCAGAAAACTCCTCTGG+CGG | 0.638652 | 7.4:+47203533 | MS.gene47785:CDS |
| CCAATCCATGACTCACCAAG+TGG | 0.643486 | 7.4:+47203424 | MS.gene47785:CDS |
| GTGTTCAAGGGAGCTTATGG+TGG | 0.648316 | 7.4:+47204009 | MS.gene47785:CDS |
| TGAAGAATGTGAAGATGATG+AGG | 0.655551 | 7.4:+47203892 | MS.gene47785:CDS |
| ACAAGCGTTCGATTCTTGGG+AGG | 0.661109 | 7.4:-47201922 | None:intergenic |
| GACATGCGGCGAGTGAACTG+TGG | 0.665014 | 7.4:-47203491 | None:intergenic |
| AAACGGCTCTGATGACACAT+TGG | 0.665091 | 7.4:-47203594 | None:intergenic |
| ACAATGAAATTGTTGCAGAG+TGG | 0.671764 | 7.4:-47204046 | None:intergenic |
| ACAACAAGAAACCAGAGACA+GGG | 0.675922 | 7.4:+47203678 | MS.gene47785:CDS |
| GAAGATGATGAGGATGGAGA+AGG | 0.686833 | 7.4:+47203902 | MS.gene47785:CDS |
| TGATTCGACAGAGAGACGTG+TGG | 0.688510 | 7.4:-47203513 | None:intergenic |
| TTGACATGTCTGCATCGTCG+TGG | 0.707837 | 7.4:-47203400 | None:intergenic |
| TCATCAGAGCCGTTTCACCG+AGG | 0.765959 | 7.4:+47203602 | MS.gene47785:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAATCAATTATTT+AGG | + | chr7.4:47203002-47203021 | MS.gene47785:intron | 10.0% |
| !! | ATAAATTAACATATATGTAA+CGG | - | chr7.4:47202677-47202696 | None:intergenic | 10.0% |
| !! | AATAAAAATTGATCATAACA+TGG | - | chr7.4:47202420-47202439 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAAATTTGACT+TGG | - | chr7.4:47202296-47202315 | None:intergenic | 15.0% |
| !!! | CATATATATTTTTACATTAG+TGG | - | chr7.4:47202645-47202664 | None:intergenic | 15.0% |
| !!! | GTCAAATTTTTTTTTTTTGA+AGG | + | chr7.4:47202297-47202316 | MS.gene47785:intron | 15.0% |
| !!! | TATGATCATACTTTTTTTTT+AGG | + | chr7.4:47202333-47202352 | MS.gene47785:intron | 15.0% |
| !!! | TTACATTGTTTTGTTTTTAA+TGG | + | chr7.4:47202021-47202040 | MS.gene47785:intron | 15.0% |
| !! | AAAAAGAAAAGTTGAAAAGT+TGG | - | chr7.4:47202518-47202537 | None:intergenic | 20.0% |
| !! | AAAATTATGTTAGTACAGAT+TGG | + | chr7.4:47202044-47202063 | MS.gene47785:intron | 20.0% |
| !! | CAAACCTCAATAAAAAAATA+GGG | + | chr7.4:47202143-47202162 | MS.gene47785:intron | 20.0% |
| !! | TCAAACCTCAATAAAAAAAT+AGG | + | chr7.4:47202142-47202161 | MS.gene47785:intron | 20.0% |
| !!! | ATATGTAACTTTTGTATCTA+TGG | + | chr7.4:47202865-47202884 | MS.gene47785:intron | 20.0% |
| !!! | ATTTCATTATTAATTTGTCG+AGG | + | chr7.4:47203162-47203181 | MS.gene47785:intron | 20.0% |
| !!! | TTAACCCTATTTTTTTATTG+AGG | - | chr7.4:47202150-47202169 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATATTTCTTTC+TGG | + | chr7.4:47202535-47202554 | MS.gene47785:intron | 20.0% |
| ! | ACTAGCAAACAATATGTATT+GGG | - | chr7.4:47202203-47202222 | None:intergenic | 25.0% |
| ! | ATATTATGATCTATGAAGCA+CGG | - | chr7.4:47203119-47203138 | None:intergenic | 25.0% |
| ! | GATAGTAGATGAATAAATCA+AGG | - | chr7.4:47202776-47202795 | None:intergenic | 25.0% |
| ! | GTACAATAATATGTTACCTA+CGG | - | chr7.4:47201984-47202003 | None:intergenic | 25.0% |
| ! | TTGTTTGTTCTTACTTTCTT+TGG | + | chr7.4:47202438-47202457 | MS.gene47785:intron | 25.0% |
| !! | AAATCAATTATTTAGGACAC+CGG | + | chr7.4:47203009-47203028 | MS.gene47785:intron | 25.0% |
| !! | AGTAGAAGTTTTTCTCAATT+CGG | + | chr7.4:47203347-47203366 | MS.gene47785:CDS | 25.0% |
| AGGGTTAAAATTCTCAAAGA+GGG | + | chr7.4:47202162-47202181 | MS.gene47785:intron | 30.0% | |
| GACTAGCAAACAATATGTAT+TGG | - | chr7.4:47202204-47202223 | None:intergenic | 30.0% | |
| GAGAACTGTTGATCAATTAA+TGG | - | chr7.4:47202840-47202859 | None:intergenic | 30.0% | |
| TAACATATATGTAACGGTGT+TGG | - | chr7.4:47202671-47202690 | None:intergenic | 30.0% | |
| TAGGGTTAAAATTCTCAAAG+AGG | + | chr7.4:47202161-47202180 | MS.gene47785:intron | 30.0% | |
| TATGAGTGTTATATAGGTGT+CGG | + | chr7.4:47202954-47202973 | MS.gene47785:intron | 30.0% | |
| TATGTATTGGGACATAAACA+AGG | - | chr7.4:47202191-47202210 | None:intergenic | 30.0% | |
| TGAGAAAAACTTCTACTGTT+AGG | - | chr7.4:47203344-47203363 | None:intergenic | 30.0% | |
| TGATCATAATCTATGAAGCA+TGG | + | chr7.4:47202572-47202591 | MS.gene47785:intron | 30.0% | |
| ! | AACTTCTACTGTTAGGATTT+TGG | - | chr7.4:47203337-47203356 | None:intergenic | 30.0% |
| ! | AGCTAAAATGCTAGTTGATA+AGG | + | chr7.4:47202472-47202491 | MS.gene47785:intron | 30.0% |
| ! | AGTTGAAAAGTTGGTTTATG+TGG | - | chr7.4:47202509-47202528 | None:intergenic | 30.0% |
| ! | AGTTGCTAATCTCTTTTGAT+TGG | - | chr7.4:47201881-47201900 | None:intergenic | 30.0% |
| !! | CTTATATTTCTTTCTGGAGT+AGG | + | chr7.4:47202541-47202560 | MS.gene47785:intron | 30.0% |
| !! | TTCACTGATTTGAAAGATCT+TGG | + | chr7.4:47203225-47203244 | MS.gene47785:intron | 30.0% |
| AATACAACAAGTCTCTTCCA+TGG | - | chr7.4:47203930-47203949 | None:intergenic | 35.0% | |
| ACAATGAAATTGTTGCAGAG+TGG | - | chr7.4:47204049-47204068 | None:intergenic | 35.0% | |
| AGCTAACTATTTGAGAACCA+TGG | - | chr7.4:47203193-47203212 | None:intergenic | 35.0% | |
| ATTAGTGACATCATCATTGG+AGG | - | chr7.4:47203788-47203807 | None:intergenic | 35.0% | |
| ATTTGCATGGTGAAGCATAA+GGG | + | chr7.4:47203947-47203966 | MS.gene47785:CDS | 35.0% | |
| GGGTTAAAATTCTCAAAGAG+GGG | + | chr7.4:47202163-47202182 | MS.gene47785:intron | 35.0% | |
| TATTTGCATGGTGAAGCATA+AGG | + | chr7.4:47203946-47203965 | MS.gene47785:CDS | 35.0% | |
| TCCATTAGTGACATCATCAT+TGG | - | chr7.4:47203791-47203810 | None:intergenic | 35.0% | |
| TGAAGAATGTGAAGATGATG+AGG | + | chr7.4:47203892-47203911 | MS.gene47785:CDS | 35.0% | |
| ! | ACTTTTGTATCTATGGTGTG+TGG | + | chr7.4:47202872-47202891 | MS.gene47785:intron | 35.0% |
| ! | CTACTGTTAGGATTTTGGAT+AGG | - | chr7.4:47203332-47203351 | None:intergenic | 35.0% |
| ! | TCCAATGATGATGTCACTAA+TGG | + | chr7.4:47203787-47203806 | MS.gene47785:CDS | 35.0% |
| ! | TGGATAGGAATATCTGAAGT+TGG | - | chr7.4:47203317-47203336 | None:intergenic | 35.0% |
| ! | TTTCTTGTTGTCATCATCGT+CGG | - | chr7.4:47203669-47203688 | None:intergenic | 35.0% |
| !! | AGAGACTTGTTGTATTTGCA+TGG | + | chr7.4:47203934-47203953 | MS.gene47785:CDS | 35.0% |
| !!! | TTACCTACGGTCTTTTTTGT+TGG | - | chr7.4:47201971-47201990 | None:intergenic | 35.0% |
| AAGATCTTGGAAAGCCTTCA+AGG | + | chr7.4:47203238-47203257 | MS.gene47785:intron | 40.0% | |
| AATTTGTCGAGGAAAGACCA+TGG | + | chr7.4:47203173-47203192 | MS.gene47785:intron | 40.0% | |
| ACAACAAGAAACCAGAGACA+GGG | + | chr7.4:47203678-47203697 | MS.gene47785:CDS | 40.0% | |
| AGACCAACAAAAAAGACCGT+AGG | + | chr7.4:47201965-47201984 | MS.gene47785:CDS | 40.0% | |
| GAATGTGAAGATGATGAGGA+TGG | + | chr7.4:47203896-47203915 | MS.gene47785:CDS | 40.0% | |
| GAATTTCTTCGTGAGAGTTG+CGG | - | chr7.4:47203572-47203591 | None:intergenic | 40.0% | |
| GGCTCGTATGAGTGTTATAT+AGG | + | chr7.4:47202948-47202967 | MS.gene47785:intron | 40.0% | |
| TAAAAGTCACTACACGTCCT+CGG | - | chr7.4:47203622-47203641 | None:intergenic | 40.0% | |
| TACGGATGTCATATGAGTGT+CGG | + | chr7.4:47203046-47203065 | MS.gene47785:intron | 40.0% | |
| TCTACAAGCGTTCGATTCTT+GGG | - | chr7.4:47201928-47201947 | None:intergenic | 40.0% | |
| TTTCTGCAGGATGTGTTCAA+GGG | + | chr7.4:47203997-47204016 | MS.gene47785:CDS | 40.0% | |
| ! | TTCTTGTTGTCATCATCGTC+GGG | - | chr7.4:47203668-47203687 | None:intergenic | 40.0% |
| !! | TTTGTTTGAGTTGTCCGACA+CGG | + | chr7.4:47202927-47202946 | MS.gene47785:intron | 40.0% |
| !! | TTTTAGAGACAGCTTCGATG+AGG | + | chr7.4:47203637-47203656 | MS.gene47785:CDS | 40.0% |
| AACACATCCTGCAGAAACTG+TGG | - | chr7.4:47203994-47204013 | None:intergenic | 45.0% | |
| AAGATTCGACTCAAACGCAC+TGG | + | chr7.4:47203263-47203282 | MS.gene47785:CDS | 45.0% | |
| ACTTGAGATCGCGATGTAAG+AGG | - | chr7.4:47202122-47202141 | None:intergenic | 45.0% | |
| AGATGGGATTGGAAGGATCA+AGG | + | chr7.4:47203834-47203853 | MS.gene47785:CDS | 45.0% | |
| ATCGGAAAAGTCCAATGCTC+CGG | + | chr7.4:47203460-47203479 | MS.gene47785:CDS | 45.0% | |
| ATGAAGCATGGAGTCCAACA+CGG | + | chr7.4:47202584-47202603 | MS.gene47785:intron | 45.0% | |
| GAAGATGATGAGGATGGAGA+AGG | + | chr7.4:47203902-47203921 | MS.gene47785:CDS | 45.0% | |
| GAATCACCAGAAAACTCCTC+TGG | + | chr7.4:47203530-47203549 | MS.gene47785:CDS | 45.0% | |
| GACAACAAGAAACCAGAGAC+AGG | + | chr7.4:47203677-47203696 | MS.gene47785:CDS | 45.0% | |
| GAGTCGAATCTTGTCCTTGA+AGG | - | chr7.4:47203255-47203274 | None:intergenic | 45.0% | |
| GATGTGTTCAAGGGAGCTTA+TGG | + | chr7.4:47204006-47204025 | MS.gene47785:CDS | 45.0% | |
| GTCTACAAGCGTTCGATTCT+TGG | - | chr7.4:47201929-47201948 | None:intergenic | 45.0% | |
| GTTTCTGCAGGATGTGTTCA+AGG | + | chr7.4:47203996-47204015 | MS.gene47785:CDS | 45.0% | |
| TATGAAGCACGGACACATCT+AGG | - | chr7.4:47203108-47203127 | None:intergenic | 45.0% | |
| ! | AAACGGCTCTGATGACACAT+TGG | - | chr7.4:47203597-47203616 | None:intergenic | 45.0% |
| ! | CACTTGGTGAGTCATGGATT+GGG | - | chr7.4:47203426-47203445 | None:intergenic | 45.0% |
| ! | GTTGGTCTCGTCTTCTTTGA+TGG | - | chr7.4:47201953-47201972 | None:intergenic | 45.0% |
| !! | GATGTCACTAATGGACTTGC+TGG | + | chr7.4:47203796-47203815 | MS.gene47785:CDS | 45.0% |
| !!! | GAGCATTGGACTTTTCCGAT+GGG | - | chr7.4:47203460-47203479 | None:intergenic | 45.0% |
| AACACTCATACGAGCCGTGT+CGG | - | chr7.4:47202944-47202963 | None:intergenic | 50.0% | |
| AACCGTCGAGAGAAGTTTGC+TGG | + | chr7.4:47201832-47201851 | MS.gene47785:CDS | 50.0% | |
| AAGGGAGCTTATGGTGGCTA+AGG | + | chr7.4:47204015-47204034 | MS.gene47785:CDS | 50.0% | |
| ACAAGAAACCAGAGACAGGG+AGG | + | chr7.4:47203681-47203700 | MS.gene47785:CDS | 50.0% | |
| ACAAGCGTTCGATTCTTGGG+AGG | - | chr7.4:47201925-47201944 | None:intergenic | 50.0% | |
| ACTACACGTCCTCGGTGAAA+CGG | - | chr7.4:47203614-47203633 | None:intergenic | 50.0% | |
| AGCCAGCAAACTTCTCTCGA+CGG | - | chr7.4:47201837-47201856 | None:intergenic | 50.0% | |
| AGGGAGCTTATGGTGGCTAA+GGG | + | chr7.4:47204016-47204035 | MS.gene47785:CDS | 50.0% | |
| CAAGAAACCAGAGACAGGGA+GGG | + | chr7.4:47203682-47203701 | MS.gene47785:CDS | 50.0% | |
| CACCTGATACGACACTGACA+CGG | + | chr7.4:47202608-47202627 | MS.gene47785:intron | 50.0% | |
| CCAATCCATGACTCACCAAG+TGG | + | chr7.4:47203424-47203443 | MS.gene47785:CDS | 50.0% | |
| CGTCGTGGTGAGTTTGGATT+CGG | - | chr7.4:47203388-47203407 | None:intergenic | 50.0% | |
| CTTGCTGGAGGAGACTGATA+GGG | + | chr7.4:47203811-47203830 | MS.gene47785:CDS | 50.0% | |
| GACTGATAGGGAGATGGGAT+TGG | + | chr7.4:47203823-47203842 | MS.gene47785:CDS | 50.0% | |
| GAGGAGACTGATAGGGAGAT+GGG | + | chr7.4:47203818-47203837 | MS.gene47785:CDS | 50.0% | |
| GATAGGGAGATGGGATTGGA+AGG | + | chr7.4:47203827-47203846 | MS.gene47785:CDS | 50.0% | |
| GTGTTCAAGGGAGCTTATGG+TGG | + | chr7.4:47204009-47204028 | MS.gene47785:CDS | 50.0% | |
| GTTCGATTCTTGGGAGGTGA+TGG | - | chr7.4:47201919-47201938 | None:intergenic | 50.0% | |
| TACTTCGACACTCCTGCGAT+CGG | - | chr7.4:47202983-47203002 | None:intergenic | 50.0% | |
| TCACCAGAAAACTCCTCTGG+CGG | + | chr7.4:47203533-47203552 | MS.gene47785:CDS | 50.0% | |
| TGATTCGACAGAGAGACGTG+TGG | - | chr7.4:47203516-47203535 | None:intergenic | 50.0% | |
| TTGACATGTCTGCATCGTCG+TGG | - | chr7.4:47203403-47203422 | None:intergenic | 50.0% | |
| ! | ACTTGCTGGAGGAGACTGAT+AGG | + | chr7.4:47203810-47203829 | MS.gene47785:CDS | 50.0% |
| ! | CCACTTGGTGAGTCATGGAT+TGG | - | chr7.4:47203427-47203446 | None:intergenic | 50.0% |
| ! | GATTCTTGGGAGGTGATGGT+CGG | - | chr7.4:47201915-47201934 | None:intergenic | 50.0% |
| ! | TGGACTTTTCCGATGGGTCA+AGG | - | chr7.4:47203454-47203473 | None:intergenic | 50.0% |
| !! | GTCACTAATGGACTTGCTGG+AGG | + | chr7.4:47203799-47203818 | MS.gene47785:CDS | 50.0% |
| !! | TCAAACGCACTGGCTCTACT+TGG | + | chr7.4:47203273-47203292 | MS.gene47785:CDS | 50.0% |
| !!! | GGAGCATTGGACTTTTCCGA+TGG | - | chr7.4:47203461-47203480 | None:intergenic | 50.0% |
| AGTGGACGACCTTGACCCAT+CGG | + | chr7.4:47203442-47203461 | MS.gene47785:CDS | 55.0% | |
| ATGGGTCAAGGTCGTCCACT+TGG | - | chr7.4:47203442-47203461 | None:intergenic | 55.0% | |
| CAGAGAGACGTGTGGACATG+CGG | - | chr7.4:47203508-47203527 | None:intergenic | 55.0% | |
| CAGAGGTGGATGCTTCAGGA+GGG | + | chr7.4:47203762-47203781 | MS.gene47785:CDS | 55.0% | |
| CCGTACGACACGTGTCAAAC+CGG | - | chr7.4:47203031-47203050 | None:intergenic | 55.0% | |
| CTGCAGAAACTGTGGCCACA+AGG | - | chr7.4:47203986-47204005 | None:intergenic | 55.0% | |
| CTGCATCGTCGTGGTGAGTT+TGG | - | chr7.4:47203394-47203413 | None:intergenic | 55.0% | |
| CTTGTGGCCACAGTTTCTGC+AGG | + | chr7.4:47203984-47204003 | MS.gene47785:CDS | 55.0% | |
| GCGAGTGAACTGTGGTCTAG+TGG | - | chr7.4:47203486-47203505 | None:intergenic | 55.0% | |
| GGAGGAGACTGATAGGGAGA+TGG | + | chr7.4:47203817-47203836 | MS.gene47785:CDS | 55.0% | |
| GTCCGTGTCAGTGTCGTATC+AGG | - | chr7.4:47202613-47202632 | None:intergenic | 55.0% | |
| GTCGTATCAGGTGTCCGTGT+TGG | - | chr7.4:47202601-47202620 | None:intergenic | 55.0% | |
| GTGAACTGTGGTCTAGTGGC+CGG | - | chr7.4:47203482-47203501 | None:intergenic | 55.0% | |
| TCATCAGAGCCGTTTCACCG+AGG | + | chr7.4:47203602-47203621 | MS.gene47785:CDS | 55.0% | |
| TTCTTCGTGAGAGTTGCGGC+CGG | - | chr7.4:47203568-47203587 | None:intergenic | 55.0% | |
| ! | ATCTAGGACTAGGCGTGTCG+CGG | - | chr7.4:47203092-47203111 | None:intergenic | 55.0% |
| ! | CCGGTTTGACACGTGTCGTA+CGG | + | chr7.4:47203028-47203047 | MS.gene47785:intron | 55.0% |
| ! | CGGCTCTGATGACACATTGG+TGG | - | chr7.4:47203594-47203613 | None:intergenic | 55.0% |
| ! | GCACGGACACATCTAGGACT+AGG | - | chr7.4:47203102-47203121 | None:intergenic | 55.0% |
| ! | GTCGTCCACTTGGTGAGTCA+TGG | - | chr7.4:47203432-47203451 | None:intergenic | 55.0% |
| ! | TTGGGAGGTGATGGTCGGTT+AGG | - | chr7.4:47201910-47201929 | None:intergenic | 55.0% |
| !! | AGAGACAGGGAGGGCACTTT+CGG | + | chr7.4:47203691-47203710 | MS.gene47785:CDS | 55.0% |
| !! | TGAGGATGGAGAAGGTGCCA+TGG | + | chr7.4:47203910-47203929 | MS.gene47785:CDS | 55.0% |
| !!! | GGTGCTGCTTTTGCTCCTTG+TGG | + | chr7.4:47203968-47203987 | MS.gene47785:CDS | 55.0% |
| ACTTTCGGCAAGGGAGGCAG+TGG | + | chr7.4:47203706-47203725 | MS.gene47785:CDS | 60.0% | |
| AGAAGCTGCTGCAGCAGCAG+AGG | + | chr7.4:47203745-47203764 | MS.gene47785:CDS | 60.0% | |
| CCAGAAAACTCCTCTGGCGG+AGG | + | chr7.4:47203536-47203555 | MS.gene47785:CDS | 60.0% | |
| CCTCTGGCGGAGGAAATCTC+CGG | + | chr7.4:47203546-47203565 | MS.gene47785:CDS | 60.0% | |
| GACATGCGGCGAGTGAACTG+TGG | - | chr7.4:47203494-47203513 | None:intergenic | 60.0% | |
| GCAGAGGTGGATGCTTCAGG+AGG | + | chr7.4:47203761-47203780 | MS.gene47785:CDS | 60.0% | |
| GCAGCAGAGGTGGATGCTTC+AGG | + | chr7.4:47203758-47203777 | MS.gene47785:CDS | 60.0% | |
| TGGTCTAGTGGCCGGAGCAT+TGG | - | chr7.4:47203474-47203493 | None:intergenic | 60.0% | |
| ! | CCTCCGCCAGAGGAGTTTTC+TGG | - | chr7.4:47203539-47203558 | None:intergenic | 60.0% |
| !! | AGGGAGGGCACTTTCGGCAA+GGG | + | chr7.4:47203697-47203716 | MS.gene47785:CDS | 60.0% |
| !! | GAAAGTGCCCTCCCTGTCTC+TGG | - | chr7.4:47203692-47203711 | None:intergenic | 60.0% |
| AGCTGCTGCAGCAGCAGAGG+TGG | + | chr7.4:47203748-47203767 | MS.gene47785:CDS | 65.0% | |
| CCGGAGATTTCCTCCGCCAG+AGG | - | chr7.4:47203549-47203568 | None:intergenic | 65.0% | |
| TGTCGGACACCGACGCGTGT+CGG | + | chr7.4:47203063-47203082 | MS.gene47785:intron | 65.0% | |
| !! | AGGTGTCGGACACCGATCGC+AGG | + | chr7.4:47202968-47202987 | MS.gene47785:intron | 65.0% |
| !! | CAGGGAGGGCACTTTCGGCA+AGG | + | chr7.4:47203696-47203715 | MS.gene47785:CDS | 65.0% |
| !! | GAGGGCACTTTCGGCAAGGG+AGG | + | chr7.4:47203700-47203719 | MS.gene47785:CDS | 65.0% |
| AAGGGAGGCAGTGGCAGCGC+AGG | + | chr7.4:47203715-47203734 | MS.gene47785:CDS | 70.0% | |
| TCGCGGTGACCGACACGCGT+CGG | - | chr7.4:47203075-47203094 | None:intergenic | 70.0% | |
| GGAGGCAGTGGCAGCGCAGG+AGG | + | chr7.4:47203718-47203737 | MS.gene47785:CDS | 75.0% | |
| GGCAGTGGCAGCGCAGGAGG+CGG | + | chr7.4:47203721-47203740 | MS.gene47785:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 47201817 | 47204090 | 47201817 | ID=MS.gene47785 |
| chr7.4 | mRNA | 47201817 | 47204090 | 47201817 | ID=MS.gene47785.t1;Parent=MS.gene47785 |
| chr7.4 | exon | 47201817 | 47201986 | 47201817 | ID=MS.gene47785.t1.exon1;Parent=MS.gene47785.t1 |
| chr7.4 | CDS | 47201817 | 47201986 | 47201817 | ID=cds.MS.gene47785.t1;Parent=MS.gene47785.t1 |
| chr7.4 | exon | 47203241 | 47204090 | 47203241 | ID=MS.gene47785.t1.exon2;Parent=MS.gene47785.t1 |
| chr7.4 | CDS | 47203241 | 47204090 | 47203241 | ID=cds.MS.gene47785.t1;Parent=MS.gene47785.t1 |
| Gene Sequence |
| Protein sequence |
