AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47842

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47842.t1 MTR_4g015410 70.927 399 87 3 72 468 1 372 0.0 585
MS.gene47842.t1 MTR_1g040690 62.815 476 160 9 1 465 2 471 0.0 582
MS.gene47842.t1 MTR_4g015450 94.286 280 16 0 190 469 195 474 0.0 552
MS.gene47842.t1 MTR_4g015290 73.846 260 27 2 3 262 5 223 1.33e-128 372
MS.gene47842.t1 MTR_1g038270 43.922 510 204 13 11 457 7 497 2.75e-115 348
MS.gene47842.t1 MTR_7g068160 30.545 550 254 16 7 465 17 529 7.75e-65 218
MS.gene47842.t1 MTR_7g068070 28.571 560 261 15 7 462 10 534 2.65e-53 187
MS.gene47842.t1 MTR_0067s0010 30.242 496 263 19 7 465 24 473 6.35e-52 182
MS.gene47842.t1 MTR_7g067600 28.755 546 265 21 7 465 8 516 1.56e-51 182
MS.gene47842.t1 MTR_7g067970 29.234 561 255 20 7 465 10 530 2.26e-51 182
MS.gene47842.t1 MTR_7g067940 30.720 472 210 12 7 379 10 463 5.90e-51 181
MS.gene47842.t1 MTR_7g067750 29.314 539 266 18 7 468 44 544 6.55e-50 179
MS.gene47842.t1 MTR_3g466740 29.435 496 275 18 6 465 10 466 1.16e-48 174
MS.gene47842.t1 MTR_7g067300 31.490 416 208 14 17 379 11 402 3.26e-48 172
MS.gene47842.t1 MTR_7g067880 28.200 539 256 22 11 459 14 511 8.15e-47 169
MS.gene47842.t1 MTR_5g086340 28.817 465 243 20 27 467 33 433 3.24e-32 128
MS.gene47842.t1 MTR_6g010890 25.000 488 277 16 5 467 3 426 3.63e-29 119
MS.gene47842.t1 MTR_3g079390 24.138 493 267 17 8 462 22 445 3.87e-26 110
MS.gene47842.t1 MTR_8g005285 26.066 422 229 11 8 364 18 421 7.10e-25 107
MS.gene47842.t1 MTR_6g009590 24.691 405 246 14 6 394 5 366 4.35e-24 104
MS.gene47842.t1 MTR_6g010920 22.961 466 284 15 11 467 10 409 6.99e-24 103
MS.gene47842.t1 MTR_7g067990 27.882 373 175 12 162 465 242 589 2.14e-23 103
MS.gene47842.t1 MTR_7g067990 37.589 141 78 4 7 146 5 136 5.12e-18 87.0
MS.gene47842.t1 MTR_6g011060 23.270 477 275 16 11 465 10 417 2.44e-22 99.4
MS.gene47842.t1 MTR_0024s0080 26.065 399 233 16 11 394 10 361 4.27e-22 98.6
MS.gene47842.t1 MTR_8g005295 26.098 410 222 11 26 364 36 435 1.17e-21 98.2
MS.gene47842.t1 MTR_2g041180 26.064 376 212 11 24 374 48 382 1.65e-21 97.4
MS.gene47842.t1 MTR_6g010810 26.501 483 254 20 6 465 2 406 2.32e-21 96.3
MS.gene47842.t1 MTR_2g036320 26.500 400 226 15 1 374 41 398 1.79e-20 94.4
MS.gene47842.t1 MTR_5g016570 24.510 510 272 20 7 465 78 525 9.87e-20 92.4
MS.gene47842.t1 MTR_7g067660 34.973 183 103 6 14 191 4 175 1.00e-19 91.3
MS.gene47842.t1 MTR_7g067660 29.778 225 109 9 259 456 174 376 1.03e-18 88.2
MS.gene47842.t1 MTR_8g005235 25.823 395 211 15 26 380 27 379 1.15e-19 91.7
MS.gene47842.t1 MTR_6g009610 23.951 405 239 14 11 394 10 366 2.11e-19 90.5
MS.gene47842.t1 MTR_6g011050 26.257 358 215 14 18 364 14 333 2.82e-19 90.1
MS.gene47842.t1 MTR_3g107590 25.313 399 250 14 11 394 11 376 5.04e-19 89.4
MS.gene47842.t1 MTR_0209s0060 25.668 374 217 10 26 369 29 371 6.15e-19 89.4
MS.gene47842.t1 MTR_0209s0030 25.668 374 217 10 26 369 29 371 6.15e-19 89.4
MS.gene47842.t1 MTR_8g006525 24.935 385 214 12 26 374 28 373 1.49e-18 88.2
MS.gene47842.t1 MTR_7g068040 34.807 181 81 4 21 201 12 155 7.97e-18 81.3
MS.gene47842.t1 MTR_6g009170 24.010 404 244 15 6 388 5 366 2.52e-17 84.3
MS.gene47842.t1 MTR_8g005225 22.997 387 210 12 26 364 37 383 4.65e-17 84.0
MS.gene47842.t1 MTR_8g005325 24.433 397 204 14 26 373 56 405 1.03e-16 82.8
MS.gene47842.t1 MTR_7g060020 24.679 389 236 15 34 397 39 395 4.02e-15 77.8
MS.gene47842.t1 MTR_5g086230 34.884 172 86 9 27 191 29 181 6.58e-15 73.6
MS.gene47842.t1 MTR_6g010850 23.782 349 199 11 126 461 49 343 2.69e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47842.t1 AT3G50150 25.847 472 253 18 28 465 92 500 2.54e-30 123
MS.gene47842.t1 AT3G50180 27.056 462 253 20 28 466 180 580 5.37e-28 117
MS.gene47842.t1 AT4G31980 26.432 454 250 15 26 465 293 676 7.06e-28 117
MS.gene47842.t1 AT5G11290 24.835 455 252 15 26 462 33 415 4.02e-27 113
MS.gene47842.t1 AT3G50170 24.481 482 254 16 28 465 115 530 1.22e-26 113
MS.gene47842.t1 AT3G50160 26.327 452 254 18 28 465 106 492 2.34e-26 112
MS.gene47842.t1 AT2G36430 23.626 364 214 10 25 364 44 367 2.12e-23 102
MS.gene47842.t1 AT3G47250 24.691 486 253 18 25 468 60 474 2.70e-23 102
MS.gene47842.t1 AT3G47250 24.691 486 253 18 25 468 60 474 2.70e-23 102
MS.gene47842.t1 AT3G47250 24.691 486 253 18 25 468 60 474 2.70e-23 102
MS.gene47842.t1 AT3G47200 23.044 473 265 13 24 462 44 451 5.33e-23 102
MS.gene47842.t1 AT3G47200 23.044 473 265 13 24 462 44 451 5.33e-23 102
MS.gene47842.t1 AT3G50120 23.444 482 261 16 28 465 105 522 1.65e-22 100
MS.gene47842.t1 AT3G50140 23.457 486 256 20 28 466 115 531 5.00e-22 99.4
MS.gene47842.t1 AT5G22550 23.705 502 259 17 26 466 44 482 8.60e-22 98.6
MS.gene47842.t1 AT1G67150 24.043 470 262 18 21 465 2 401 5.43e-21 95.1
MS.gene47842.t1 AT1G67150 24.043 470 262 18 21 465 2 401 5.43e-21 95.1
MS.gene47842.t1 AT1G67150 24.051 474 261 18 21 465 2 405 1.78e-20 93.6
MS.gene47842.t1 AT2G28580 25.109 458 256 20 26 465 109 497 1.79e-20 94.7
MS.gene47842.t1 AT2G28580 25.109 458 256 20 26 465 123 511 2.08e-20 94.4
MS.gene47842.t1 AT2G28580 25.474 475 254 22 24 465 39 446 3.66e-20 93.2
MS.gene47842.t1 AT5G22540 24.862 362 216 10 24 364 29 355 5.13e-20 92.8
MS.gene47842.t1 AT3G50190 24.009 454 262 18 28 465 98 484 5.19e-20 93.2
MS.gene47842.t1 AT2G28580 25.474 475 254 22 24 465 107 514 8.00e-20 92.8
MS.gene47842.t1 AT2G28580 25.474 475 254 22 24 465 121 528 8.89e-20 92.4
MS.gene47842.t1 AT3G50130 25.410 366 201 14 28 355 141 472 1.52e-18 89.0
MS.gene47842.t1 AT2G44930 24.406 463 275 18 26 465 84 494 1.53e-18 88.6
MS.gene47842.t1 AT2G28580 27.034 381 207 19 24 371 121 463 6.10e-17 83.6
MS.gene47842.t1 AT3G50150 27.097 310 162 13 28 306 92 368 1.13e-16 82.4
MS.gene47842.t1 AT3G47210 25.134 374 214 14 24 373 91 422 1.45e-16 82.4
MS.gene47842.t1 AT1G65985 23.444 482 265 17 22 454 10 436 1.25e-15 79.3
MS.gene47842.t1 AT1G65985 23.444 482 265 17 22 454 10 436 1.25e-15 79.3
MS.gene47842.t1 AT5G11290 23.333 420 227 15 64 462 1 346 8.48e-15 76.3
MS.gene47842.t1 AT3G44710 21.000 500 290 17 24 466 45 496 4.61e-14 74.7
MS.gene47842.t1 AT3G60470 23.381 278 167 5 194 465 296 533 3.75e-13 72.0
MS.gene47842.t1 AT3G60470 30.319 188 101 6 28 197 34 209 6.96e-13 71.2

Find 88 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACAAAGCTTCGTGCTTC+TGG 0.151932 4.4:-85098573 MS.gene47842:CDS
CTTGGGAGCAAAGCAAAATT+TGG 0.188159 4.4:-85098392 MS.gene47842:CDS
CAAGAGTAATGAAGATTTAT+TGG 0.196412 4.4:-85098262 MS.gene47842:CDS
GTGGAAATTCATAGGAATTT+TGG 0.230849 4.4:-85098016 MS.gene47842:CDS
CACGAGACACCTTCAATTAA+TGG 0.297794 4.4:-85099171 MS.gene47842:CDS
ATTTCCACACATTTGGTATA+TGG 0.313291 4.4:+85098031 None:intergenic
TTTGAGATCCTTATGTACTA+TGG 0.321621 4.4:-85098084 MS.gene47842:CDS
ATTGAATTACTCCAAGAAAA+AGG 0.331092 4.4:-85098306 MS.gene47842:CDS
CTACAAAGCTTCGTGCTTCT+GGG 0.332003 4.4:-85098572 MS.gene47842:CDS
TTCGCGCATGTAATTCCATT+TGG 0.338341 4.4:+85099142 None:intergenic
CTATTCCGCACGATTTCTAA+TGG 0.338735 4.4:-85098237 MS.gene47842:CDS
CATTAGGCTTGGTGATTACA+TGG 0.342111 4.4:-85098916 MS.gene47842:CDS
CCTATGAATTTCCACACATT+TGG 0.349871 4.4:+85098024 None:intergenic
AGTGGAGGAATTTGATTGCT+TGG 0.350702 4.4:-85098410 MS.gene47842:CDS
CCAAATGTGTGGAAATTCAT+AGG 0.367495 4.4:-85098024 MS.gene47842:CDS
TTCTATTGGAGCTTCTCATT+AGG 0.371334 4.4:-85098932 MS.gene47842:CDS
AATATAGTTCGTAAAGCCTT+TGG 0.372864 4.4:-85098714 MS.gene47842:CDS
TCTCGTGGCTCCTCTATGTA+AGG 0.375572 4.4:+85099187 None:intergenic
TTCTAATGGAGCTGAACATA+TGG 0.380681 4.4:-85098223 MS.gene47842:CDS
TTTGCTTCTCGAAGTTTGTC+TGG 0.381265 4.4:+85099248 None:intergenic
TTGTTCTCAAGAAGTTATAT+AGG 0.391202 4.4:-85098785 MS.gene47842:CDS
TCGCGCATGTAATTCCATTT+GGG 0.394399 4.4:+85099143 None:intergenic
CATTGATGCCATGTTCTGAT+AGG 0.410400 4.4:+85098117 None:intergenic
GTGGAGGAATTTGATTGCTT+GGG 0.418003 4.4:-85098409 MS.gene47842:CDS
TCGAAGTTTGTCTGGAATGT+TGG 0.420523 4.4:+85099256 None:intergenic
GCTAAAATAATGATAATAGA+TGG 0.431623 4.4:-85098960 MS.gene47842:CDS
TTATGTACTATGGTCGAAAC+TGG 0.436621 4.4:-85098074 MS.gene47842:CDS
GTTGTTTCCTTGATATATAG+TGG 0.436839 4.4:+85098441 None:intergenic
GTCTTTGATTTCACTACCAT+CGG 0.448390 4.4:+85098752 None:intergenic
TGAACCCAACATCACTTCAA+TGG 0.451835 4.4:+85099313 None:intergenic
TTGGAGCTTCTCATTAGGCT+TGG 0.453184 4.4:-85098927 MS.gene47842:CDS
GTTCCCATTGAAGTGATGTT+GGG 0.460869 4.4:-85099317 MS.gene47842:CDS
GGTTCCCATTGAAGTGATGT+TGG 0.467303 4.4:-85099318 MS.gene47842:CDS
TGGGTTCTTCCATTAATTGA+AGG 0.468306 4.4:+85099162 None:intergenic
TCCTCTATGTAAGGGTCCTA+TGG 0.469257 4.4:+85099196 None:intergenic
TTTGGCAGCTGCTATGCTCC+TGG 0.474517 4.4:-85097998 MS.gene47842:CDS
GAACCCAACATCACTTCAAT+GGG 0.482386 4.4:+85099314 None:intergenic
AGATGCAATCAGATTTCAGT+TGG 0.488825 4.4:-85099343 MS.gene47842:CDS
AATTAATGGAAGAACCCAAA+TGG 0.496341 4.4:-85099157 MS.gene47842:CDS
AGTTTCGACCATAGTACATA+AGG 0.497587 4.4:+85098076 None:intergenic
CTCCTGAGCTATTCATCAAA+GGG 0.497969 4.4:+85098688 None:intergenic
GCAATCAGATTTCAGTTGGA+TGG 0.498332 4.4:-85099339 MS.gene47842:CDS
GAACAAAACCAACAATATGA+AGG 0.505321 4.4:-85098627 MS.gene47842:CDS
TGTTGAAAGAAGCTGTTGTT+TGG 0.506600 4.4:+85098889 None:intergenic
TACCCTTTGATGAATAGCTC+AGG 0.509442 4.4:-85098690 MS.gene47842:CDS
AAAATAGAAGATCAGAGATA+AGG 0.519894 4.4:-85099088 MS.gene47842:CDS
TCTTTGATTTCACTACCATC+GGG 0.523312 4.4:+85098753 None:intergenic
AGGAAACAACTGAAGTTAAG+TGG 0.526842 4.4:-85098428 MS.gene47842:CDS
TATTCCACCACTATATATCA+AGG 0.528264 4.4:-85098448 MS.gene47842:CDS
CCTCCTGAGCTATTCATCAA+AGG 0.534629 4.4:+85098687 None:intergenic
GATGAATGTGTATGAATACA+AGG 0.537964 4.4:-85098172 MS.gene47842:CDS
TCATTTGATGCATTTGTCCA+CGG 0.539867 4.4:-85098652 MS.gene47842:CDS
TGAAGCAAATTAGTCACTGC+GGG 0.545288 4.4:+85097945 None:intergenic
TCAGAACATGGCATCAATGT+AGG 0.551206 4.4:-85098113 MS.gene47842:CDS
TAACTTCTTGAGAACAAGGA+AGG 0.553803 4.4:+85098791 None:intergenic
CAAGGGAATGAAAGTCACTA+AGG 0.554858 4.4:-85098154 MS.gene47842:CDS
CGCGAATTTCTTGATCGGCA+AGG 0.563036 4.4:-85099125 MS.gene47842:CDS
TCTCAAGAAGTTATATAGGA+AGG 0.565626 4.4:-85098781 MS.gene47842:CDS
ACATGCGCGAATTTCTTGAT+CGG 0.571180 4.4:-85099130 MS.gene47842:CDS
CTCGTGGCTCCTCTATGTAA+GGG 0.575461 4.4:+85099188 None:intergenic
GTGATTTGTGCTAGCTATGG+TGG 0.575532 4.4:-85099026 MS.gene47842:CDS
TCCATAGGACCCTTACATAG+AGG 0.576383 4.4:-85099197 MS.gene47842:CDS
CAATCATATCAACCAACTTG+TGG 0.584791 4.4:+85098508 None:intergenic
CATTAATTGAAGGTGTCTCG+TGG 0.588826 4.4:+85099172 None:intergenic
GAGATAAGGTTAAGAGAATG+TGG 0.589736 4.4:-85099074 MS.gene47842:CDS
AAATCAAAATCACCACAAGT+TGG 0.590584 4.4:-85098520 MS.gene47842:CDS
TATATAACTTCTTGAGAACA+AGG 0.592402 4.4:+85098787 None:intergenic
TCTGCATGATGGTGAGTACC+AGG 0.592926 4.4:+85097980 None:intergenic
GCTTCTGGGGTAATAATTCG+CGG 0.602892 4.4:-85098558 MS.gene47842:CDS
AACAAAACCAACAATATGAA+GGG 0.609393 4.4:-85098626 MS.gene47842:CDS
AACTTCTTGAGAACAAGGAA+GGG 0.618005 4.4:+85098792 None:intergenic
TACAAAGCTTCGTGCTTCTG+GGG 0.620340 4.4:-85098571 MS.gene47842:CDS
ATGAATGTGTATGAATACAA+GGG 0.620397 4.4:-85098171 MS.gene47842:CDS
TATAGGAAGGTATTTCCCGA+TGG 0.625533 4.4:-85098768 MS.gene47842:CDS
AAAGTGATTTGTGCTAGCTA+TGG 0.635935 4.4:-85099029 MS.gene47842:CDS
CCTTTGATGAATAGCTCAGG+AGG 0.636021 4.4:-85098687 MS.gene47842:CDS
GTTTCCTTGATATATAGTGG+TGG 0.657872 4.4:+85098444 None:intergenic
TGAGTAATATGTCTGCATGA+TGG 0.662734 4.4:+85097969 None:intergenic
AAACAACTGAAGTTAAGTGG+AGG 0.666190 4.4:-85098425 MS.gene47842:CDS
CAGCTCCATTAGAAATCGTG+CGG 0.666617 4.4:+85098232 None:intergenic
ATGTTGGGTTCACTCAATCA+CGG 0.666870 4.4:-85099302 MS.gene47842:CDS
GCGACCATATACCAAATGTG+TGG 0.667596 4.4:-85098035 MS.gene47842:CDS
TGATTTGTGCTAGCTATGGT+GGG 0.671905 4.4:-85099025 MS.gene47842:CDS
ATTCATCAAAGGGTAACCAA+AGG 0.674926 4.4:+85098698 None:intergenic
GGGAATGAAAGTCACTAAGG+TGG 0.682429 4.4:-85098151 MS.gene47842:CDS
AATCAAAGACGATTATCGTG+TGG 0.682935 4.4:-85098739 MS.gene47842:CDS
TTTGATGCATTTGTCCACGG+TGG 0.685296 4.4:-85098649 MS.gene47842:CDS
ATGAAGCAAATTAGTCACTG+CGG 0.688827 4.4:+85097944 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GCTAAAATAATGATAATAGA+TGG - chr4.4:85098335-85098354 MS.gene47842:CDS 20.0%
! AAAAATTACCTATCAGAACA+TGG - chr4.4:85099170-85099189 MS.gene47842:CDS 25.0%
! AAAATAGAAGATCAGAGATA+AGG - chr4.4:85098207-85098226 MS.gene47842:CDS 25.0%
! AAACCAAAAAATATCTCCAT+AGG - chr4.4:85098083-85098102 MS.gene47842:CDS 25.0%
! AACAAAACCAACAATATGAA+GGG - chr4.4:85098669-85098688 MS.gene47842:CDS 25.0%
! ATGAATGTGTATGAATACAA+GGG - chr4.4:85099124-85099143 MS.gene47842:CDS 25.0%
! ATTGAATTACTCCAAGAAAA+AGG - chr4.4:85098989-85099008 MS.gene47842:CDS 25.0%
! CAAGAGTAATGAAGATTTAT+TGG - chr4.4:85099033-85099052 MS.gene47842:CDS 25.0%
! TATATAACTTCTTGAGAACA+AGG + chr4.4:85098511-85098530 None:intergenic 25.0%
! TTGTTCTCAAGAAGTTATAT+AGG - chr4.4:85098510-85098529 MS.gene47842:CDS 25.0%
!! ACATCTTTTCTTCTGTTTTA+AGG + chr4.4:85098442-85098461 None:intergenic 25.0%
!! CTTCTATTTTGTTCTTGTAT+TGG + chr4.4:85098197-85098216 None:intergenic 25.0%
!!! AATAGATGGTTGTTTTCTAT+TGG - chr4.4:85098349-85098368 MS.gene47842:CDS 25.0%
!!! ATTATTTTAGCGATTTCTTC+TGG + chr4.4:85098326-85098345 None:intergenic 25.0%
!!! GATATAAGTTTTAGTGATTC+TGG - chr4.4:85098815-85098834 MS.gene47842:CDS 25.0%
AAATCAAAATCACCACAAGT+TGG - chr4.4:85098775-85098794 MS.gene47842:CDS 30.0%
AATATAGTTCGTAAAGCCTT+TGG - chr4.4:85098581-85098600 MS.gene47842:CDS 30.0%
AATTAATGGAAGAACCCAAA+TGG - chr4.4:85098138-85098157 MS.gene47842:CDS 30.0%
ATTTCCACACATTTGGTATA+TGG + chr4.4:85099267-85099286 None:intergenic 30.0%
GAACAAAACCAACAATATGA+AGG - chr4.4:85098668-85098687 MS.gene47842:CDS 30.0%
GATGAATGTGTATGAATACA+AGG - chr4.4:85099123-85099142 MS.gene47842:CDS 30.0%
TATTCCACCACTATATATCA+AGG - chr4.4:85098847-85098866 MS.gene47842:CDS 30.0%
TCTCAAGAAGTTATATAGGA+AGG - chr4.4:85098514-85098533 MS.gene47842:CDS 30.0%
! GTGGAAATTCATAGGAATTT+TGG - chr4.4:85099279-85099298 MS.gene47842:CDS 30.0%
! GTTGTTTCCTTGATATATAG+TGG + chr4.4:85098857-85098876 None:intergenic 30.0%
! TCTTATGCACTTTTCTTCAA+TGG - chr4.4:85098944-85098963 MS.gene47842:CDS 30.0%
! TTTGAGATCCTTATGTACTA+TGG - chr4.4:85099211-85099230 MS.gene47842:CDS 30.0%
!! GTTTTAGTGAAATTTGTGCA+AGG - chr4.4:85099101-85099120 MS.gene47842:CDS 30.0%
!!! CTTTTTTCCCTTCATATTGT+TGG + chr4.4:85098679-85098698 None:intergenic 30.0%
AAACAACTGAAGTTAAGTGG+AGG - chr4.4:85098870-85098889 MS.gene47842:CDS 35.0%
AACTTCTTGAGAACAAGGAA+GGG + chr4.4:85098506-85098525 None:intergenic 35.0%
AATCAAAGACGATTATCGTG+TGG - chr4.4:85098556-85098575 MS.gene47842:CDS 35.0%
AGGAAACAACTGAAGTTAAG+TGG - chr4.4:85098867-85098886 MS.gene47842:CDS 35.0%
AGTTTCGACCATAGTACATA+AGG + chr4.4:85099222-85099241 None:intergenic 35.0%
ATTCATCAAAGGGTAACCAA+AGG + chr4.4:85098600-85098619 None:intergenic 35.0%
CAATCATATCAACCAACTTG+TGG + chr4.4:85098790-85098809 None:intergenic 35.0%
CCAAATGTGTGGAAATTCAT+AGG - chr4.4:85099271-85099290 MS.gene47842:CDS 35.0%
CCTATGAATTTCCACACATT+TGG + chr4.4:85099274-85099293 None:intergenic 35.0%
GAGATAAGGTTAAGAGAATG+TGG - chr4.4:85098221-85098240 MS.gene47842:CDS 35.0%
GTTTCCTTGATATATAGTGG+TGG + chr4.4:85098854-85098873 None:intergenic 35.0%
TAACTTCTTGAGAACAAGGA+AGG + chr4.4:85098507-85098526 None:intergenic 35.0%
TCATTTGATGCATTTGTCCA+CGG - chr4.4:85098643-85098662 MS.gene47842:CDS 35.0%
TGAGTAATATGTCTGCATGA+TGG + chr4.4:85099329-85099348 None:intergenic 35.0%
TGGGTTCTTCCATTAATTGA+AGG + chr4.4:85098136-85098155 None:intergenic 35.0%
TGTTGAAAGAAGCTGTTGTT+TGG + chr4.4:85098409-85098428 None:intergenic 35.0%
TTATGTACTATGGTCGAAAC+TGG - chr4.4:85099221-85099240 MS.gene47842:CDS 35.0%
TTCTAATGGAGCTGAACATA+TGG - chr4.4:85099072-85099091 MS.gene47842:CDS 35.0%
TTCTATTGGAGCTTCTCATT+AGG - chr4.4:85098363-85098382 MS.gene47842:CDS 35.0%
! AAAGTGATTTGTGCTAGCTA+TGG - chr4.4:85098266-85098285 MS.gene47842:CDS 35.0%
! GTCTTTGATTTCACTACCAT+CGG + chr4.4:85098546-85098565 None:intergenic 35.0%
! TCACAATGACACCTTTTTCT+TGG + chr4.4:85099003-85099022 None:intergenic 35.0%
! TCTTTGATTTCACTACCATC+GGG + chr4.4:85098545-85098564 None:intergenic 35.0%
!! TTTTAGTGATTCTGGAGAGT+TGG - chr4.4:85098823-85098842 MS.gene47842:CDS 35.0%
!!! GGTCCTATGGAGATATTTTT+TGG + chr4.4:85098089-85098108 None:intergenic 35.0%
ACATGCGCGAATTTCTTGAT+CGG - chr4.4:85098165-85098184 MS.gene47842:CDS 40.0%
AGTGGAGGAATTTGATTGCT+TGG - chr4.4:85098885-85098904 MS.gene47842:CDS 40.0%
ATGTTGGGTTCACTCAATCA+CGG - chr4.4:85097993-85098012 MS.gene47842:CDS 40.0%
CAAGGGAATGAAAGTCACTA+AGG - chr4.4:85099141-85099160 MS.gene47842:CDS 40.0%
CACGAGACACCTTCAATTAA+TGG - chr4.4:85098124-85098143 MS.gene47842:CDS 40.0%
CATTGATGCCATGTTCTGAT+AGG + chr4.4:85099181-85099200 None:intergenic 40.0%
CTATTCCGCACGATTTCTAA+TGG - chr4.4:85099058-85099077 MS.gene47842:CDS 40.0%
CTCCTGAGCTATTCATCAAA+GGG + chr4.4:85098610-85098629 None:intergenic 40.0%
CTTGGGAGCAAAGCAAAATT+TGG - chr4.4:85098903-85098922 MS.gene47842:CDS 40.0%
GAACCCAACATCACTTCAAT+GGG + chr4.4:85097984-85098003 None:intergenic 40.0%
GCAATCAGATTTCAGTTGGA+TGG - chr4.4:85097956-85097975 MS.gene47842:CDS 40.0%
GTGGAGGAATTTGATTGCTT+GGG - chr4.4:85098886-85098905 MS.gene47842:CDS 40.0%
GTTCCCATTGAAGTGATGTT+GGG - chr4.4:85097978-85097997 MS.gene47842:CDS 40.0%
TACCCTTTGATGAATAGCTC+AGG - chr4.4:85098605-85098624 MS.gene47842:CDS 40.0%
TCAGAACATGGCATCAATGT+AGG - chr4.4:85099182-85099201 MS.gene47842:CDS 40.0%
TCGCGCATGTAATTCCATTT+GGG + chr4.4:85098155-85098174 None:intergenic 40.0%
TGAACCCAACATCACTTCAA+TGG + chr4.4:85097985-85098004 None:intergenic 40.0%
TTCGCGCATGTAATTCCATT+TGG + chr4.4:85098156-85098175 None:intergenic 40.0%
TTTGCTTCTCGAAGTTTGTC+TGG + chr4.4:85098050-85098069 None:intergenic 40.0%
! TCGAAGTTTGTCTGGAATGT+TGG + chr4.4:85098042-85098061 None:intergenic 40.0%
! TGATTTGTGCTAGCTATGGT+GGG - chr4.4:85098270-85098289 MS.gene47842:CDS 40.0%
!! CATTAATTGAAGGTGTCTCG+TGG + chr4.4:85098126-85098145 None:intergenic 40.0%
!! CATTAGGCTTGGTGATTACA+TGG - chr4.4:85098379-85098398 MS.gene47842:CDS 40.0%
!! TATAGGAAGGTATTTCCCGA+TGG - chr4.4:85098527-85098546 MS.gene47842:CDS 40.0%
CAGCTCCATTAGAAATCGTG+CGG + chr4.4:85099066-85099085 None:intergenic 45.0%
CCTCCTGAGCTATTCATCAA+AGG + chr4.4:85098611-85098630 None:intergenic 45.0%
CCTTTGATGAATAGCTCAGG+AGG - chr4.4:85098608-85098627 MS.gene47842:CDS 45.0%
CTACAAAGCTTCGTGCTTCT+GGG - chr4.4:85098723-85098742 MS.gene47842:CDS 45.0%
GCGACCATATACCAAATGTG+TGG - chr4.4:85099260-85099279 MS.gene47842:CDS 45.0%
GGGAATGAAAGTCACTAAGG+TGG - chr4.4:85099144-85099163 MS.gene47842:CDS 45.0%
GGTTCCCATTGAAGTGATGT+TGG - chr4.4:85097977-85097996 MS.gene47842:CDS 45.0%
TACAAAGCTTCGTGCTTCTG+GGG - chr4.4:85098724-85098743 MS.gene47842:CDS 45.0%
TCCATAGGACCCTTACATAG+AGG - chr4.4:85098098-85098117 MS.gene47842:CDS 45.0%
TCCTCTATGTAAGGGTCCTA+TGG + chr4.4:85098102-85098121 None:intergenic 45.0%
TGAAGGGAAAAAAGCGAAGC+TGG - chr4.4:85098685-85098704 MS.gene47842:CDS 45.0%
TTGGAGCTTCTCATTAGGCT+TGG - chr4.4:85098368-85098387 MS.gene47842:CDS 45.0%
TTTGATGCATTTGTCCACGG+TGG - chr4.4:85098646-85098665 MS.gene47842:CDS 45.0%
! GTGATTTGTGCTAGCTATGG+TGG - chr4.4:85098269-85098288 MS.gene47842:CDS 45.0%
!! GCTTCTGGGGTAATAATTCG+CGG - chr4.4:85098737-85098756 MS.gene47842:CDS 45.0%
!!! TTGTTGGTTTTGTTCCACCG+TGG + chr4.4:85098663-85098682 None:intergenic 45.0%
CGCGAATTTCTTGATCGGCA+AGG - chr4.4:85098170-85098189 MS.gene47842:CDS 50.0%
CTCGTGGCTCCTCTATGTAA+GGG + chr4.4:85098110-85098129 None:intergenic 50.0%
GCTACAAAGCTTCGTGCTTC+TGG - chr4.4:85098722-85098741 MS.gene47842:CDS 50.0%
TCTCGTGGCTCCTCTATGTA+AGG + chr4.4:85098111-85098130 None:intergenic 50.0%
! TCTGCATGATGGTGAGTACC+AGG + chr4.4:85099318-85099337 None:intergenic 50.0%
TTTGGCAGCTGCTATGCTCC+TGG - chr4.4:85099297-85099316 MS.gene47842:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 85097954 85099363 85097954 ID=MS.gene47842
chr4.4 mRNA 85097954 85099363 85097954 ID=MS.gene47842.t1;Parent=MS.gene47842
chr4.4 exon 85097954 85099363 85097954 ID=MS.gene47842.t1.exon1;Parent=MS.gene47842.t1
chr4.4 CDS 85097954 85099363 85097954 ID=cds.MS.gene47842.t1;Parent=MS.gene47842.t1
Gene Sequence

>MS.gene47842

ATGCAATCAGATTTCAGTTGGATGGTTCCCATTGAAGTGATGTTGGGTTCACTCAATCACGGTGAAGTTCAAGCATGTAGCATTTCCAACATTCCAGACAAACTTCGAGAAGCAAACGAAGATGCTTATAAACCAAAAAATATCTCCATAGGACCCTTACATAGAGGAGCCACGAGACACCTTCAATTAATGGAAGAACCCAAATGGAATTACATGCGCGAATTTCTTGATCGGCAAGGACCAATACAAGAACAAAATAGAAGATCAGAGATAAGGTTAAGAGAATGTGGCTATGACATTCTCAAGTTAGATAAAGTGATTTGTGCTAGCTATGGTGGGAGCAACAACAACATCGTCGAAGAAAAAGAACCAGAAGAAATCGCTAAAATAATGATAATAGATGGTTGTTTTCTATTGGAGCTTCTCATTAGGCTTGGTGATTACATGGATAACCAAACAACAGCTTCTTTCAACAACGACTCAATCCTTAAAACAGAAGAAAAGATGTTGTCTGTTTTGAATGATATAGCAATGCTTGAAAATCAAATGCCCTTCCTTGTTCTCAAGAAGTTATATAGGAAGGTATTTCCCGATGGTAGTGAAATCAAAGACGATTATCGTGTGGCTAATATAGTTCGTAAAGCCTTTGGTTACCCTTTGATGAATAGCTCAGGAGGTGCTCATATACTTCATTTGATGCATTTGTCCACGGTGGAACAAAACCAACAATATGAAGGGAAAAAAGCGAAGCTGGAATTGATGCGTTGTGCTACAAAGCTTCGTGCTTCTGGGGTAATAATTCGCGGTAAATTAAATAGCACAAATCAAAATCACCACAAGTTGGTTGATATGATTGATTTTGATATAAGTTTTAGTGATTCTGGAGAGTTGGATATTCCACCACTATATATCAAGGAAACAACTGAAGTTAAGTGGAGGAATTTGATTGCTTGGGAGCAAAGCAAAATTTGGATTAGATGCAAATACACTTCTTATGCACTTTTCTTCAATGGTTTGATATGCTGTGAGCATGACATTGAATTACTCCAAGAAAAAGGTGTCATTGTGAATGATATGAACAAGAGTAATGAAGATTTATTGGCGCTATTCCGCACGATTTCTAATGGAGCTGAACATATGGATTTGAGTTTTAGTGAAATTTGTGCAAGGATGAATGTGTATGAATACAAGGGAATGAAAGTCACTAAGGTGGTGCAAAAATTACCTATCAGAACATGGCATCAATGTAGGCGTGTTTTTGAGATCCTTATGTACTATGGTCGAAACTGGTACAATATTTTGATACGCGACCATATACCAAATGTGTGGAAATTCATAGGAATTTTGGCAGCTGCTATGCTCCTGGTACTCACCATCATGCAGACATATTACTCATCCCGCAGTGACTAA
Protein sequence

>MS.gene47842.t1

MQSDFSWMVPIEVMLGSLNHGEVQACSISNIPDKLREANEDAYKPKNISIGPLHRGATRHLQLMEEPKWNYMREFLDRQGPIQEQNRRSEIRLRECGYDILKLDKVICASYGGSNNNIVEEKEPEEIAKIMIIDGCFLLELLIRLGDYMDNQTTASFNNDSILKTEEKMLSVLNDIAMLENQMPFLVLKKLYRKVFPDGSEIKDDYRVANIVRKAFGYPLMNSSGGAHILHLMHLSTVEQNQQYEGKKAKLELMRCATKLRASGVIIRGKLNSTNQNHHKLVDMIDFDISFSDSGELDIPPLYIKETTEVKWRNLIAWEQSKIWIRCKYTSYALFFNGLICCEHDIELLQEKGVIVNDMNKSNEDLLALFRTISNGAEHMDLSFSEICARMNVYEYKGMKVTKVVQKLPIRTWHQCRRVFEILMYYGRNWYNILIRDHIPNVWKFIGILAAAMLLVLTIMQTYYSSRSD