AlfalfaGEDB | MS.gene47861

M. sativa cultivar XinJiangDaYe / MS.gene47861

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF12854.10 PF13041.9 PF14432.9 PF20431.1

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47861.t1	XP_003629914.2	91.4	701	59	1	1	701	1	700	0.00E+00	1158.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47861.t1	Q9FHF9	56.7	478	202	3	225	701	224	697	9.7e-156	552.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47861.t1	G7L833	91.4	701	59	1	1	701	1	700	0.0e+00	1158.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052584	MS.gene47861	0.804669	1.93E-49	-1.69E-46
MS.gene058830	MS.gene47861	0.818844	1.59E-52	-1.69E-46

Showing 1 to 2 of 2 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene013301	MS.gene47861	PPI
MS.gene039239	MS.gene47861	PPI
MS.gene049273	MS.gene47861	PPI
MS.gene054966	MS.gene47861	PPI
MS.gene06393	MS.gene47861	PPI
MS.gene56645	MS.gene47861	PPI
MS.gene64350	MS.gene47861	PPI

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47861.t1	MTR_8g088300	96.006	701	27	1	1	701	1	700	0.0	1389
MS.gene47861.t1	MTR_8g106950	36.562	733	418	7	1	701	49	766	9.06e-168	500
MS.gene47861.t1	MTR_8g106950	25.442	452	305	9	80	511	34	473	1.55e-34	140
MS.gene47861.t1	MTR_8g065730	36.212	718	407	10	26	701	40	748	1.30e-161	484
MS.gene47861.t1	MTR_8g065730	27.115	461	297	11	65	507	12	451	1.09e-46	177
MS.gene47861.t1	MTR_8g069550	35.453	739	420	10	12	701	27	757	3.64e-158	475
MS.gene47861.t1	MTR_8g069550	27.115	461	297	11	65	507	21	460	4.41e-46	176
MS.gene47861.t1	MTR_8g106910	34.958	718	413	6	19	701	36	734	3.64e-155	469
MS.gene47861.t1	MTR_7g074040	36.652	693	398	8	20	701	45	707	7.07e-152	457
MS.gene47861.t1	MTR_7g074040	24.871	583	325	18	66	604	23	536	1.76e-38	152

Showing 1 to 10 of 751 entries

Previous1 2 3 4 5…76Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47861.t1	AT5G46460	54.902	663	289	6	40	701	44	697	0.0	753
MS.gene47861.t1	AT4G02750	37.821	661	396	5	41	701	136	781	5.95e-167	499
MS.gene47861.t1	AT4G02750	27.743	483	298	13	71	539	73	518	1.87e-46	177
MS.gene47861.t1	AT4G02750	23.944	355	200	10	189	507	63	383	2.61e-11	67.4
MS.gene47861.t1	AT1G56690	36.928	677	401	7	29	701	50	704	2.95e-147	446
MS.gene47861.t1	AT1G56690	26.794	418	272	10	114	527	36	423	6.65e-30	126
MS.gene47861.t1	AT1G68930	33.706	715	425	8	28	701	11	717	2.32e-145	441
MS.gene47861.t1	AT1G68930	25.891	421	239	11	151	507	9	420	6.82e-32	132
MS.gene47861.t1	AT1G68930	33.706	715	425	8	28	701	37	743	6.42e-145	441
MS.gene47861.t1	AT1G68930	25.446	448	250	12	124	507	19	446	1.09e-32	135

Showing 1 to 10 of 901 entries

Previous1 2 3 4 5…91Next

Find 147 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGTTGCAAATGATTG+AGG	0.498246	4.4:-12764921	None:intergenic
AAATCTATGAAAAGTTAGCG+TGG	0.674475	4.4:+12766388	MS.gene47861:CDS
AAGAATGGCATATGTTCTTG+TGG	0.518376	4.4:+12766681	MS.gene47861:CDS
AAGGAAGTTGAAGAGGGTTT+GGG	0.323918	4.4:-12764686	None:intergenic
AAGGTTATCCAACTTGACCC+AGG	0.605099	4.4:-12766309	None:intergenic
AATGATGCTCTTCGTTTGTT+CGG	0.410918	4.4:+12765136	MS.gene47861:CDS
AATGATTGAGGCTTTGATGA+TGG	0.487352	4.4:-12764909	None:intergenic
AATGGAATTGTAAAACAACC+TGG	0.596162	4.4:+12766291	MS.gene47861:CDS
ACACCAAAGACACTATCTCA+TGG	0.572510	4.4:+12764882	MS.gene47861:CDS
ACATGGAATGCTATGGTTAA+TGG	0.364259	4.4:+12765091	MS.gene47861:CDS

Showing 1 to 10 of 147 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCGTTGCAAATGATTG+AGG	-	chr4.4:12764924-12764943	None:intergenic	30.0%
AAATCTATGAAAAGTTAGCG+TGG	+	chr4.4:12766388-12766407	MS.gene47861:CDS	30.0%
AATGGAATTGTAAAACAACC+TGG	+	chr4.4:12766291-12766310	MS.gene47861:CDS	30.0%
ATGAAAAATCTACGTGTATG+TGG	+	chr4.4:12766573-12766592	MS.gene47861:CDS	30.0%
ATGGAATTGTAAAACAACCT+GGG	+	chr4.4:12766292-12766311	MS.gene47861:CDS	30.0%
TAAGAAATTGGAGGTTAGTA+AGG	-	chr4.4:12764708-12764727	None:intergenic	30.0%
TGAAAAATCTACGTGTATGT+GGG	+	chr4.4:12766574-12766593	MS.gene47861:CDS	30.0%
TGGAATTTCTTCAACTACTT+TGG	+	chr4.4:12765276-12765295	MS.gene47861:CDS	30.0%
TGTTATCATACCATAGTGAA+AGG	+	chr4.4:12766496-12766515	MS.gene47861:CDS	30.0%
TTTAAAGAAATGTTGAGGGA+AGG	+	chr4.4:12765862-12765881	MS.gene47861:CDS	30.0%

Showing 1 to 10 of 183 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	12764611	12766716	12764611	ID=MS.gene47861
chr4.4	mRNA	12764611	12766716	12764611	ID=MS.gene47861.t1;Parent=MS.gene47861
chr4.4	exon	12764611	12766716	12764611	ID=MS.gene47861.t1.exon1;Parent=MS.gene47861.t1
chr4.4	CDS	12764611	12766716	12764611	ID=cds.MS.gene47861.t1;Parent=MS.gene47861.t1

Gene Sequence

>MS.gene47861

ATGCTAAAATTCACGAGCCAAATAACCACCCATCTGAAATGTCGTACGACACCATTTACCACTCTTATTCAAAACCCCAAACCCTCTTCAACTTCCTTACTAACCTCCAATTTCTTAAACCACCTCAAAAACCAAAAACTAGACTCTGCACGTGCTGTCTTCAACAAAATCCCTTCCCCTCACGTGTCACTCTACACCAAGCTACTCCTCGCTTATGCTCACAATAACAATCTCCATGAAGCAATCAACCTCTTCAACCAAATCCCATCAAACACCAAAGACACTATCTCATGGAATTCCATCATCAAAGCCTCAATCATTTGCAACGATTTTGTCACTGCAGTTAAACTGTTCGATGAAATGCCGCTGAGGAATTCAATTTCATGGACAACGATAATCCACGGTTTCTTATCAACAGGAAGAGTTAACGAAGCTGAAAGGTTTTTTAATGCAATGCCGTATGTTGATAAAGACGTTGCCACATGGAATGCTATGGTTAATGGCTATTGTAATAATGGTAGAGTTAATGATGCTCTTCGTTTGTTCGGTGAAATGCCGTCCAGGGATGTTATTTCTTGGACTTCGATTATTGCTGGGTTGGATCGTAATGGAATGAGTTATCAAGCATTGTTTTTGTTTAAGAAGATGGTGGGTTTTTCTGGTGTTGGAATTTCTTCAACTACTTTGGTTTGTGGCTTGTCTGCTGCTGCTAAAATTTTGGATTTTTACGCGGGTATTCAGATTCATTGTTGTATGTTTAAGTTTGGTTTTTGTTGTGGTTTTGATGAGTTTGTGTCTGCTTCGCTAGTTACTTTTTACGCGTGTTGTAAGAGAATGGATGATGCTTTTAACGTTTTTGGTGAGACTGTTTGTAAGAATGTAGTGGTTTGGACTGCTCTTTTGACCGGGTATGGTTTGAATGATAAGCATGTGGAAGCATTGGAGGTTTTTAGTGAGATGGTGAGATTCAATGTGGTGCCTAACGAGTCTTCTTTTACTAGTGCTTTGAATTCGTGTGTTGGGTTGGAGGATCTTGAGAAGGGTAGAGTGATTCATGCTGCAGGAATTAAAATGGGTTTGGTAAATGCAGTCTATACGGGGAATTCTCTTGTTGTTATGTATAGTAAATGTGGTTTTATTGGTGATGCATTGTGTGTGTTTAAGGGGATTGGTGAGAAGAATGTTGTGTCCTGGAATTCTGTGATTGTTGGTTGTGCTCAGCATGGATGTGGAACATGGGCTTTGGTGCTTTTTAAAGAAATGTTGAGGGAAGGAGTTGAGTCTGATGAGATCACGTTGACTGGTTTGCTTTCTGCTTGTAGCAGGTCCGGGATGTTACAAAAGGCAAGGTGTTTTTTTGGGTATTTTGCTCGGAAAAGATCAATGAAGCTGACGGTTGAGCACTATGCTTGTATGGTGGATGTGCTTGGCCGGTGTGGAGAGGTGGAGGAAGCGGAAGCGCTGGCGACGAGCATGCCTGTGGAAGCAAACTCAATGGTATGGCTGGTTTTGCTGAGTGCTTGCAGGGTGCATTCTAGTTTGGATGTTGCAGAAAGAGCTGCGAAACGGATATTTGAAATGGAGCCTGATTGTAGTGCTGCATACGTGCTGCTGTCGAACTTGTATGCATCTTCTAGAAGATGGTCAGAAGTTGCAAGGATTAGGATGAAAATGAAACATAATGGAATTGTAAAACAACCTGGGTCAAGTTGGATAACCTTAAAAGGAATGAGGCATGAATTTCTGTCTGCAGATAGGTCCCATCCTCTAACCGAGAAAATCTATGAAAAGTTAGCGTGGTTAGGAATAAAGTTAAAAGAACTGGGTTATATTCCTGATCAACAATTTGCCTTGCATGATGTTGGAATTGAGCAAAATGAAGAAATGTTATCATACCATAGTGAAAGGCTTGCAATTGCATTTGGATTGCTTAGCACTGTGGAAGGAAGTACAATAACTATAATGAAAAATCTACGTGTATGTGGGGATTGTCATACTGCAATAACGCTTATGGCAAAGATTGTTAACAGAGAGATTGTTGTCAGAGATTCTAGCCGTTTTCATCACTTTAAGAATGGCATATGTTCTTGTGGGGATTATTGGTAG

Protein sequence

>MS.gene47861.t1

MLKFTSQITTHLKCRTTPFTTLIQNPKPSSTSLLTSNFLNHLKNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSIIKASIICNDFVTAVKLFDEMPLRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFGEMPSRDVISWTSIIAGLDRNGMSYQALFLFKKMVGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGFDEFVSASLVTFYACCKRMDDAFNVFGETVCKNVVVWTALLTGYGLNDKHVEALEVFSEMVRFNVVPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLVNAVYTGNSLVVMYSKCGFIGDALCVFKGIGEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQKARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSACRVHSSLDVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWSEVARIRMKMKHNGIVKQPGSSWITLKGMRHEFLSADRSHPLTEKIYEKLAWLGIKLKELGYIPDQQFALHDVGIEQNEEMLSYHSERLAIAFGLLSTVEGSTITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSSRFHHFKNGICSCGDYW