AlfalfaGEDB | MS.gene06393

M. sativa cultivar XinJiangDaYe / MS.gene06393

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06393.t1	XP_003602631.1	97.2	705	20	0	1	705	1	705	0.00E+00	1129.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06393.t1	Q9SIT7	72.6	674	178	3	9	680	8	676	4.5e-217	755.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06393.t1	G7JC33	97.2	705	20	0	1	705	1	705	0.0e+00	1129.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049273	MS.gene06393	0.811814	5.80E-51	-1.69E-46
MS.gene054966	MS.gene06393	0.974744	1.07E-138	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene004739	MS.gene06393	PPI
MS.gene009064	MS.gene06393	PPI
MS.gene015337	MS.gene06393	PPI
MS.gene021733	MS.gene06393	PPI
MS.gene023666	MS.gene06393	PPI
MS.gene024726	MS.gene06393	PPI
MS.gene045045	MS.gene06393	PPI
MS.gene058822	MS.gene06393	PPI
MS.gene06393	MS.gene79567	PPI
MS.gene06393	MS.gene070634	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06393.t1	MTR_3g096420	97.021	705	21	0	1	705	1	705	0.0	1419
MS.gene06393.t1	MTR_1g103840	38.483	725	397	8	19	704	10	724	2.39e-178	528
MS.gene06393.t1	MTR_1g103840	25.538	372	268	6	18	381	274	644	9.11e-36	145
MS.gene06393.t1	MTR_1g103840	23.975	317	150	6	383	608	8	324	1.18e-14	78.2
MS.gene06393.t1	MTR_8g069550	38.952	706	358	6	19	691	18	683	2.30e-176	522
MS.gene06393.t1	MTR_8g069550	32.308	455	267	7	13	464	145	561	1.68e-75	258
MS.gene06393.t1	MTR_8g065730	38.834	703	357	6	22	691	12	674	4.66e-176	521
MS.gene06393.t1	MTR_8g065730	32.222	450	265	6	17	464	141	552	1.50e-77	264
MS.gene06393.t1	MTR_1g039030	37.900	657	395	4	18	671	145	791	6.71e-164	497
MS.gene06393.t1	MTR_1g039030	29.508	610	322	10	33	574	22	591	9.64e-72	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06393.t1	AT2G13600	69.585	674	198	3	9	680	8	676	0.0	1002
MS.gene06393.t1	AT2G22070	38.174	723	396	8	22	700	9	724	7.30e-171	509
MS.gene06393.t1	AT2G22070	28.343	501	272	10	9	464	132	590	1.83e-52	194
MS.gene06393.t1	AT1G25360	36.857	700	392	7	38	695	33	724	7.93e-162	486
MS.gene06393.t1	AT4G02750	38.559	708	389	11	4	695	38	715	2.18e-158	477
MS.gene06393.t1	AT1G68930	36.677	668	352	6	41	676	2	630	1.63e-149	452
MS.gene06393.t1	AT1G68930	32.203	413	241	6	38	413	132	542	3.42e-70	243
MS.gene06393.t1	AT1G68930	27.410	332	209	2	17	347	242	542	3.61e-44	169
MS.gene06393.t1	AT1G68930	36.567	670	354	6	39	676	26	656	2.37e-149	452
MS.gene06393.t1	AT1G68930	27.410	332	209	2	17	347	268	568	4.91e-44	169

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Find 151 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGATGGAGAGGAATG+TGG	0.695958	3.2:-80481496	MS.gene06393:CDS
AAAGGACCATTATACATGCA+TGG	0.623745	3.2:-80480944	MS.gene06393:CDS
AAATGTGGATTGGTTGAAGA+TGG	0.547052	3.2:-80481213	MS.gene06393:CDS
AACAGGCTCGTTGATGTATA+TGG	0.364286	3.2:-80482353	MS.gene06393:CDS
AACGTAAGGTCCAGAGTTCA+AGG	0.504755	3.2:+80480753	None:intergenic
AATATTGGTGTTCAAATCCA+TGG	0.469698	3.2:-80482023	MS.gene06393:CDS
AATCAACCATGCATGTATAA+TGG	0.372904	3.2:+80480938	None:intergenic
AATCTTGCTGATTTGAAGCT+TGG	0.429355	3.2:-80481336	MS.gene06393:CDS
ACAAAATGGTTACGGTACCG+AGG	0.700158	3.2:-80481121	MS.gene06393:CDS
ACAACAGCATCAGGCTCCAT+TGG	0.489841	3.2:+80480862	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATATCAGAATCTTCCC+CGG	+	chr3.2:80481690-80481709	None:intergenic	30.0%
AATCAACCATGCATGTATAA+TGG	+	chr3.2:80482018-80482037	None:intergenic	30.0%
ACTTATCTTACACAGTGAAA+TGG	-	chr3.2:80482495-80482514	MS.gene06393:CDS	30.0%
ATAGTTGGATATGCACAAAA+TGG	-	chr3.2:80481818-80481837	MS.gene06393:CDS	30.0%
ATGTGAGGAATATAGTTTCT+TGG	-	chr3.2:80481066-80481085	MS.gene06393:CDS	30.0%
ATTACATGCTATGAGCAAAA+TGG	-	chr3.2:80481098-80481117	MS.gene06393:CDS	30.0%
ATTATTCCTCCTCCTAAAAA+GGG	-	chr3.2:80481541-80481560	MS.gene06393:CDS	30.0%
ATTGACATGTACATGAAATG+TGG	-	chr3.2:80481725-80481744	MS.gene06393:CDS	30.0%
CATGTATAATGGTCCTTTAT+AGG	+	chr3.2:80482007-80482026	None:intergenic	30.0%
GTTCATGGAAACATTACATT+AGG	-	chr3.2:80482142-80482161	MS.gene06393:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	80480429	80482546	80480429	ID=MS.gene06393
chr3.2	mRNA	80480429	80482546	80480429	ID=MS.gene06393.t1;Parent=MS.gene06393
chr3.2	exon	80480429	80482546	80480429	ID=MS.gene06393.t1.exon1;Parent=MS.gene06393.t1
chr3.2	CDS	80480429	80482546	80480429	ID=cds.MS.gene06393.t1;Parent=MS.gene06393.t1

Gene Sequence

>MS.gene06393

ATGGCTAAACATTGTTTGGTTCGAAAAGTGGTGGGTGACTTGTCTTTTCTGGACTCATCACCTTTCGCTAAGCTATTGGACACTTGTGTTAAATCAAAGTCTGTTTTTGATGCACGTCGTGTTCATGCTCGAATCATTAAGACACAATTTTCCTCTGAAATCTTCATTCAGAACAGGCTCGTTGATGTATATGGTAAATGCGGGTTTTTGGAGGATGCACGCAAGGTGTTTGATCATATGCCGCAGAGGAATACTTTCAGTTGGAACGCGGTTTTAAGCGCGTTGACGAAGTGTGGTGCTCTTGATGAGGCTTTGAACTTGTTTAACTCTATGCCTGAGCGTGATCAGTGTTCATGGAATGCTATGGTGTCTGGTTTTGCTCAACGGGATCGGTTTGAGGAAGCATTGAGATTTGTTGTTGATATGCATAGTGAGGATTTCGTGCTTAATGAGTATTCGTTTGGCAGTGCTCTTAGTGCTTGCGCAGGGTTGATGGATTTGAATATTGGTGTTCAAATCCATGGTTTGATAGTGAAGTCTCGTTACTCGTTGGATGTTTACATGGGTTCTGCTCTTGTTGATATGTACTCCAAATGTGGGGTAGTGGGTAGTGCTCAGAGGGCTTTTGATGATATGGATGTGAGGAATATAGTTTCTTGGAATAGTTTGATTACATGCTATGAGCAAAATGGTCCTGCGGGAAAAGCTCTTGAGGTTTTTGTAAGAATGATGAATTGTGGGATTGAGCCTGATGAGATTACTTTGGCCAGTGTGGTCAGTGCTTGTGCAAGCTTATCGGCAATTAGGGAAGGTTTGCAAATTCACGCGCGTGTTATGAAACAGGATAAATACAGGAACGACCTTGTGTTAGGCAATGCTTTGGTTGATATGTATGCAAAATGCAGGAGAGTTAATGATGCTCGATTGGTTTTCGATAGGATGCCGCTTAGGGATGTGGTATCTGAAACCTCCATGGTTAGTGGATATGCAAAGGCGTCAAGTGTGAAAGCCGCAAGACTGATGTTTTCAAACATGATGGAGAGGAATGTGGTGTCGTGGAATGCGCTTATTGCAGGTTATACGCAGAATGGAGAAAACGAAGAGGCTGTTAGATTATTCCTCCTCCTAAAAAGGGAATCCATCTGGCCAACACATTACACCTTTGGCAATCTACTTAATGCATGTGCAAATCTTGCTGATTTGAAGCTTGGAAGACAGGCTCATACTCACATTTTGAAGCATGGATTTTGGTTTAAGTCCGGGGAAGATTCTGATATTTTTGTAGGGAATTCTCTTATTGACATGTACATGAAATGTGGATTGGTTGAAGATGGACGCTTGGTTTTTGAGCACATGTTAGAAAGGGATAGCGTCTCGTGGAATGCCATGATAGTTGGATATGCACAAAATGGTTACGGTACCGAGGCCCTTGAAATTTTCAGGAAAATGCTGGTATCTGGAGAGAGACCAGATCATGTTACCATGATAGGAGTTCTGTCTGCGTGTAGTCATGCAGGACTTGTTGAAGAAGGGCGCCGTTACTTCCAATCAATGACGACCGAGCATGGTTTAGTACCTATAAAGGACCATTATACATGCATGGTTGATTTACTTGGTCGGGCCGGTTGCCTTGACGAAGCAAACAATTTGATACAGACAATGCCAATGGAGCCTGATGCTGTTGTTTGGGGATCATTACTTGCTGCTTGTAAGGTTCATGGAAACATTACATTAGGGAAGTATGTAGCAGAAAGGCTCTTAGAGATTGATCCCTTGAACTCTGGACCTTACGTTCTTCTTTCAAATATGTATGCTGAGCTTGGTAGATGGAAAGATGTGGTTAGAGTCCGGAAACAGATGAGGCAAATGGGAGTAATTAAGCAACCTGGTTGCAGCTGGATTTCAATTCAGAGTCATCTACATGTTTTCATGGTAAAAGATAAAAGACACCCTCATAAAAAGGACATCTATTTAATTCTGAAAATTCTCACAGAACAGATGAAGCGAGTTGGCTATGTGCCAGAAGCTGACGATGACGAGCCTTATGAGGAGGAAAGCGACTCTGAACTTATCTTACACAGTGAAATGGAAACGGCAGTAGATGCTGCAGTTGGATAA

Protein sequence

>MS.gene06393.t1

MAKHCLVRKVVGDLSFLDSSPFAKLLDTCVKSKSVFDARRVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMPQRNTFSWNAVLSALTKCGALDEALNLFNSMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLNIGVQIHGLIVKSRYSLDVYMGSALVDMYSKCGVVGSAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVVSACASLSAIREGLQIHARVMKQDKYRNDLVLGNALVDMYAKCRRVNDARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFEHMLERDSVSWNAMIVGYAQNGYGTEALEIFRKMLVSGERPDHVTMIGVLSACSHAGLVEEGRRYFQSMTTEHGLVPIKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMKRVGYVPEADDDEPYEEESDSELILHSEMETAVDAAVG