Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48039.t1 | XP_003617390.1 | 96.9 | 545 | 17 | 0 | 1 | 545 | 1 | 545 | 1.40E-289 | 1005 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48039.t1 | A0A0A1C930 | 70.5 | 594 | 126 | 8 | 1 | 545 | 1 | 594 | 2.3e-221 | 769.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48039.t1 | A9YVC4 | 96.9 | 545 | 17 | 0 | 1 | 545 | 1 | 545 | 9.8e-290 | 1005.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057100 | MS.gene48039 | 0.94158 | 3.25E-101 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48039.t1 | MTR_5g091050 | 96.881 | 545 | 17 | 0 | 1 | 545 | 1 | 545 | 0.0 | 1090 |
| MS.gene48039.t1 | MTR_5g026450 | 91.396 | 523 | 36 | 2 | 29 | 545 | 23 | 542 | 0.0 | 974 |
| MS.gene48039.t1 | MTR_5g026460 | 91.396 | 523 | 36 | 2 | 29 | 545 | 23 | 542 | 0.0 | 974 |
| MS.gene48039.t1 | MTR_5g026430 | 91.396 | 523 | 36 | 2 | 29 | 545 | 23 | 542 | 0.0 | 974 |
| MS.gene48039.t1 | MTR_5g026480 | 91.396 | 523 | 36 | 2 | 29 | 545 | 23 | 542 | 0.0 | 974 |
| MS.gene48039.t1 | MTR_5g026500 | 87.840 | 551 | 60 | 3 | 1 | 545 | 1 | 550 | 0.0 | 955 |
| MS.gene48039.t1 | MTR_5g024880 | 84.441 | 572 | 57 | 8 | 1 | 545 | 1 | 567 | 0.0 | 948 |
| MS.gene48039.t1 | MTR_8g072640 | 74.099 | 583 | 113 | 6 | 1 | 545 | 1 | 583 | 0.0 | 860 |
| MS.gene48039.t1 | MTR_5g087550 | 76.426 | 526 | 116 | 2 | 28 | 545 | 40 | 565 | 0.0 | 811 |
| MS.gene48039.t1 | MTR_5g024880 | 82.353 | 493 | 55 | 8 | 1 | 466 | 1 | 488 | 0.0 | 799 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48039.t1 | AT1G76490 | 72.693 | 531 | 128 | 3 | 28 | 541 | 102 | 632 | 0.0 | 808 |
| MS.gene48039.t1 | AT2G17370 | 70.076 | 528 | 136 | 3 | 28 | 540 | 34 | 554 | 0.0 | 771 |
Find 130 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTATGATTCTATATT+AGG | 0.182370 | 5.2:+77044913 | MS.gene48039:CDS |
| TGTAAAGCTATTTATGTTTC+CGG | 0.227444 | 5.2:+77045072 | MS.gene48039:CDS |
| TTTCCTGACATGGATGTTAT+TGG | 0.259684 | 5.2:+77045492 | MS.gene48039:CDS |
| TGGAGGGATCAGAATATATT+TGG | 0.271951 | 5.2:-77044384 | None:intergenic |
| CAGATTCCGGTGGGTGTTGC+CGG | 0.292180 | 5.2:+77044967 | MS.gene48039:CDS |
| CAAGCTGTGGAGAGAGTTAC+TGG | 0.312644 | 5.2:+77044859 | MS.gene48039:CDS |
| ATGGATGTTATTGGTATATC+TGG | 0.323945 | 5.2:+77045501 | MS.gene48039:CDS |
| CTTAATTTACTTGGTGTTAA+GGG | 0.331705 | 5.2:+77045918 | MS.gene48039:CDS |
| AGGATTTCCTGTTGTAGCTT+TGG | 0.332478 | 5.2:-77044712 | None:intergenic |
| TCAGCCATGGCTGGTGCTCT+TGG | 0.340875 | 5.2:+77045687 | MS.gene48039:CDS |
| GTTGTTGGTGCAGTGGTGTC+TGG | 0.343470 | 5.2:+77044769 | MS.gene48039:CDS |
| ACAGTGAATTCTGCTGCTTT+TGG | 0.360301 | 5.2:-77044423 | None:intergenic |
| GAAGACTAGTGTGGCGTCTT+TGG | 0.361120 | 5.2:+77045632 | MS.gene48039:CDS |
| TCTTAATTTACTTGGTGTTA+AGG | 0.367100 | 5.2:+77045917 | MS.gene48039:CDS |
| TCGCATACTTTCTTCTTAAC+CGG | 0.369945 | 5.2:+77044503 | MS.gene48039:CDS |
| AACATCCATGTCAGGAAAAT+CGG | 0.371639 | 5.2:-77045487 | None:intergenic |
| ATTGAGGTGGGCACAGTTGG+AGG | 0.372888 | 5.2:+77045864 | MS.gene48039:CDS |
| AGAAAGCTGCGGCGGTGAAT+TGG | 0.374911 | 5.2:+77045541 | MS.gene48039:CDS |
| TATTGTTTCTGCTATTTACT+TGG | 0.376885 | 5.2:+77045734 | MS.gene48039:CDS |
| TCCATTGAGGTGGGCACAGT+TGG | 0.389581 | 5.2:+77045861 | MS.gene48039:CDS |
| CTCATGTCTGCAATTGCAGC+TGG | 0.399313 | 5.2:+77046023 | MS.gene48039:CDS |
| ATCTACCTTACAGCTTTCTT+CGG | 0.403450 | 5.2:+77044613 | MS.gene48039:CDS |
| TCTGCTATTTACTTGGCAAC+TGG | 0.403532 | 5.2:+77045741 | MS.gene48039:CDS |
| CAGTGTTGCGAGATGCCAAT+AGG | 0.412746 | 5.2:+77044937 | MS.gene48039:CDS |
| TTTGTTAAGTAAAGTGAAGA+AGG | 0.418114 | 5.2:-77044451 | None:intergenic |
| AATAGGGTTTGTTCAGATTC+CGG | 0.419719 | 5.2:+77044954 | MS.gene48039:CDS |
| GTAGCTGGTTCAGTCCTTGC+AGG | 0.419905 | 5.2:+77045990 | MS.gene48039:CDS |
| GCCGACGTGCTGCTACAATT+AGG | 0.420894 | 5.2:+77044833 | MS.gene48039:CDS |
| ACTAGATTCACTTGTTCAAC+GGG | 0.423690 | 5.2:+77045402 | MS.gene48039:CDS |
| AGGAGCAAACTCTAGGCTAT+TGG | 0.434686 | 5.2:+77045959 | MS.gene48039:CDS |
| CTTCTTCTTCATCGTAATGA+AGG | 0.434927 | 5.2:-77044648 | None:intergenic |
| GCCATGGCTGGTGCTCTTGG+TGG | 0.436980 | 5.2:+77045690 | MS.gene48039:CDS |
| TCAGCTTGTCTTAATTTACT+TGG | 0.450033 | 5.2:+77045909 | MS.gene48039:CDS |
| TGTTCAACGGGTGATGCAAT+GGG | 0.450595 | 5.2:+77045414 | MS.gene48039:CDS |
| TCCATCTCATGAAGCAACTT+TGG | 0.453618 | 5.2:-77046096 | None:intergenic |
| AGAAAGCTGTAAGGTAGATT+AGG | 0.466477 | 5.2:-77044609 | None:intergenic |
| GGAATCTGAACAAACCCTAT+TGG | 0.468578 | 5.2:-77044952 | None:intergenic |
| TACTCGCTTGAATCGAAGCT+TGG | 0.474728 | 5.2:+77044805 | MS.gene48039:CDS |
| GACAACTGCGGAAGCACCAC+CGG | 0.475138 | 5.2:-77045091 | None:intergenic |
| ATGGAAGACGAGGAGGTTGT+TGG | 0.475572 | 5.2:+77044754 | MS.gene48039:CDS |
| TCCAACTGTGCCCACCTCAA+TGG | 0.476267 | 5.2:-77045862 | None:intergenic |
| AATAGCCTAGAGTTTGCTCC+TGG | 0.480778 | 5.2:-77045957 | None:intergenic |
| CACTAGATTCACTTGTTCAA+CGG | 0.483222 | 5.2:+77045401 | MS.gene48039:CDS |
| GTTACTGGAAGGTCACTTGA+AGG | 0.484214 | 5.2:+77044874 | MS.gene48039:CDS |
| TTGAGGTGGGCACAGTTGGA+GGG | 0.484663 | 5.2:+77045865 | MS.gene48039:CDS |
| AGTATTAAAGCTACTATAGC+AGG | 0.485421 | 5.2:+77045366 | MS.gene48039:CDS |
| AAAGGACCGGCAACACCCAC+CGG | 0.486844 | 5.2:-77044973 | None:intergenic |
| TGAGGTGGGCACAGTTGGAG+GGG | 0.493167 | 5.2:+77045866 | MS.gene48039:CDS |
| GAGATGGAATCAAAATTTAG+AGG | 0.495960 | 5.2:-77045198 | None:intergenic |
| CATGGAGAGGTGTAGAGGTT+CGG | 0.496244 | 5.2:-77044540 | None:intergenic |
| TTGTTCAACGGGTGATGCAA+TGG | 0.497983 | 5.2:+77045413 | MS.gene48039:CDS |
| GTCACTTGAAGGTTTACCAT+TGG | 0.500496 | 5.2:+77044885 | MS.gene48039:CDS |
| AGTGTTGCGAGATGCCAATA+GGG | 0.503985 | 5.2:+77044938 | MS.gene48039:CDS |
| CAACCTTCAGTGGTTGCCAT+TGG | 0.505213 | 5.2:-77045024 | None:intergenic |
| AGTCAATCCAAAGCTACAAC+AGG | 0.505657 | 5.2:+77044705 | MS.gene48039:CDS |
| GTAGATTAGGCAAGCAGTGA+GGG | 0.505843 | 5.2:-77044596 | None:intergenic |
| TCCGCAGTTGTCCTTCGTGA+TGG | 0.511896 | 5.2:+77045102 | MS.gene48039:CDS |
| AATAGCTTTACAACCTCTGT+TGG | 0.514525 | 5.2:-77045061 | None:intergenic |
| TAGATCTGTTGTATTTCATG+TGG | 0.514983 | 5.2:-77046061 | None:intergenic |
| CACTATGCCTTCCATTGAGG+TGG | 0.515478 | 5.2:+77045851 | MS.gene48039:CDS |
| GGGATGAACATGGTATCAAA+AGG | 0.522120 | 5.2:+77045435 | MS.gene48039:CDS |
| GCCGGTCCTTTGTTGCTCGA+TGG | 0.525821 | 5.2:+77044985 | MS.gene48039:CDS |
| GAGGTGGGCACAGTTGGAGG+GGG | 0.525880 | 5.2:+77045867 | MS.gene48039:CDS |
| CTTACTGGTTCAGCCATGGC+TGG | 0.527929 | 5.2:+77045678 | MS.gene48039:CDS |
| GCGGCGGTGAATTGGATTGA+AGG | 0.530179 | 5.2:+77045549 | MS.gene48039:CDS |
| CAGTAACTCTCTCCACAGCT+TGG | 0.536806 | 5.2:-77044858 | None:intergenic |
| GCATAGTGACTGAGATATGA+AGG | 0.538116 | 5.2:-77045836 | None:intergenic |
| GCCACCAAGAGCACCAGCCA+TGG | 0.539071 | 5.2:-77045691 | None:intergenic |
| CTATTGGCAACTATAGTAGC+TGG | 0.539688 | 5.2:+77045975 | MS.gene48039:CDS |
| CTTGAAGGTTTACCATTGGA+AGG | 0.543540 | 5.2:+77044889 | MS.gene48039:CDS |
| ATCATTAACAGCTTCCATCA+TGG | 0.543666 | 5.2:-77045805 | None:intergenic |
| TTGTAGCTTTGGATTGACTT+CGG | 0.543867 | 5.2:-77044701 | None:intergenic |
| AGACTCCAGGAGCAAACTCT+AGG | 0.544017 | 5.2:+77045952 | MS.gene48039:CDS |
| ATACCAATAACATCCATGTC+AGG | 0.544139 | 5.2:-77045495 | None:intergenic |
| TGCAACTAAACAACCTTCAG+TGG | 0.550714 | 5.2:-77045034 | None:intergenic |
| TTCAGTGGTTGCCATTGGCA+CGG | 0.554461 | 5.2:-77045019 | None:intergenic |
| CTTGTTGAATGTATGAGAGA+TGG | 0.555113 | 5.2:-77045214 | None:intergenic |
| GCGGAGTTGAATCTTACGAC+GGG | 0.556400 | 5.2:-77045138 | None:intergenic |
| AAATCTTACTGGTTCAGCCA+TGG | 0.557583 | 5.2:+77045674 | MS.gene48039:CDS |
| TTCATCGTAATGAAGGATGA+AGG | 0.561519 | 5.2:-77044641 | None:intergenic |
| GGAAACTAGAGCGAGAATCT+CGG | 0.563787 | 5.2:-77044575 | None:intergenic |
| ACCATCGAGCAACAAAGGAC+CGG | 0.565288 | 5.2:-77044986 | None:intergenic |
| GTGCCAATGGCAACCACTGA+AGG | 0.569007 | 5.2:+77045021 | MS.gene48039:CDS |
| CGAGGCTGTAATTAAAGAAG+AGG | 0.579510 | 5.2:+77045593 | MS.gene48039:CDS |
| AGTCACTATGCCTTCCATTG+AGG | 0.579598 | 5.2:+77045848 | MS.gene48039:CDS |
| TCTCGGAGATTGTGAGGACA+TGG | 0.580902 | 5.2:-77044558 | None:intergenic |
| TTCTCATTGTATGACCATGA+TGG | 0.582723 | 5.2:+77045791 | MS.gene48039:CDS |
| CAACGCCGAAGAAAGCTGTA+AGG | 0.585113 | 5.2:-77044618 | None:intergenic |
| TAAAGAATACACCGTGCCAA+TGG | 0.585969 | 5.2:+77045008 | MS.gene48039:CDS |
| TCATGTCTGCAATTGCAGCT+GGG | 0.586024 | 5.2:+77046024 | MS.gene48039:CDS |
| GGAGCTAGTAAAGAGACTCC+AGG | 0.592509 | 5.2:+77045939 | MS.gene48039:CDS |
| CGAGAATCTCGGAGATTGTG+AGG | 0.594968 | 5.2:-77044564 | None:intergenic |
| TTCGATTCAAGCGAGTAAGA+TGG | 0.597340 | 5.2:-77044799 | None:intergenic |
| CGGCGGTGAATTGGATTGAA+GGG | 0.597484 | 5.2:+77045550 | MS.gene48039:CDS |
| CATACTTTCTTCTTAACCGG+TGG | 0.598139 | 5.2:+77044506 | MS.gene48039:CDS |
| TCTTTACCATCGAGCAACAA+AGG | 0.602437 | 5.2:-77044991 | None:intergenic |
| AGGGTTTGTTCAGATTCCGG+TGG | 0.604995 | 5.2:+77044957 | MS.gene48039:CDS |
| TCATAATCAAAACCTTCCAA+TGG | 0.606628 | 5.2:-77044901 | None:intergenic |
| AGGTAAATCAGTGGTGTGCG+AGG | 0.607376 | 5.2:+77045575 | MS.gene48039:CDS |
| CGAGGAGGTTGTTGGTGCAG+TGG | 0.607705 | 5.2:+77044762 | MS.gene48039:CDS |
| TACAATTAGGAACCAAGCTG+TGG | 0.608865 | 5.2:+77044846 | MS.gene48039:CDS |
| ACTGTGCCCACCTCAATGGA+AGG | 0.609074 | 5.2:-77045858 | None:intergenic |
| GGCTGTAATTAAAGAAGAGG+TGG | 0.610180 | 5.2:+77045596 | MS.gene48039:CDS |
| ATGATGGAAGCTGTTAATGA+TGG | 0.618580 | 5.2:+77045807 | MS.gene48039:CDS |
| TGAGTGAGAGCTCTCCTGCA+AGG | 0.619208 | 5.2:-77046004 | None:intergenic |
| GGGTTTGTTCAGATTCCGGT+GGG | 0.619817 | 5.2:+77044958 | MS.gene48039:CDS |
| TGATGCAATGGGGATGAACA+TGG | 0.620753 | 5.2:+77045425 | MS.gene48039:CDS |
| GAGGACATGGAGAGGTGTAG+AGG | 0.622809 | 5.2:-77044545 | None:intergenic |
| TAGCTTTGGATTGACTTCGG+TGG | 0.623108 | 5.2:-77044698 | None:intergenic |
| GTGAATTGGATTGAAGGGAG+AGG | 0.624405 | 5.2:+77045555 | MS.gene48039:CDS |
| ACTATGCCTTCCATTGAGGT+GGG | 0.631117 | 5.2:+77045852 | MS.gene48039:CDS |
| GGTAGATTAGGCAAGCAGTG+AGG | 0.637836 | 5.2:-77044597 | None:intergenic |
| TTCGGACAAGAAAGCTGCGG+CGG | 0.638658 | 5.2:+77045533 | MS.gene48039:CDS |
| GGAAGCTGTTAATGATGGCA+AGG | 0.638837 | 5.2:+77045812 | MS.gene48039:CDS |
| AGCGGAGTTGAATCTTACGA+CGG | 0.639019 | 5.2:-77045139 | None:intergenic |
| AAAGCTATTTATGTTTCCGG+TGG | 0.639838 | 5.2:+77045075 | MS.gene48039:CDS |
| CGGAGTTGAATCTTACGACG+GGG | 0.648586 | 5.2:-77045137 | None:intergenic |
| CTGTGGAGAGAGTTACTGGA+AGG | 0.651029 | 5.2:+77044863 | MS.gene48039:CDS |
| TTTGTCGATGGAAGACGAGG+AGG | 0.653554 | 5.2:+77044747 | MS.gene48039:CDS |
| GAGATTGTGAGGACATGGAG+AGG | 0.663075 | 5.2:-77044553 | None:intergenic |
| TTGTTCGGACAAGAAAGCTG+CGG | 0.664622 | 5.2:+77045530 | MS.gene48039:CDS |
| CTCTGGTCATTCCATCACGA+AGG | 0.665834 | 5.2:-77045113 | None:intergenic |
| TTAGTTGCAAGTACCAACAG+AGG | 0.672341 | 5.2:+77045048 | MS.gene48039:CDS |
| TCCTAATTGTAGCAGCACGT+CGG | 0.672727 | 5.2:-77044834 | None:intergenic |
| TGAAGGGAGAGGTAAATCAG+TGG | 0.678039 | 5.2:+77045566 | MS.gene48039:CDS |
| GTTAAGAAGAAAGTATGCGA+CGG | 0.701089 | 5.2:-77044500 | None:intergenic |
| GGAGTTGAATCTTACGACGG+GGG | 0.723640 | 5.2:-77045136 | None:intergenic |
| GAAAGTGTTGAAGACTAGTG+TGG | 0.728459 | 5.2:+77045623 | MS.gene48039:CDS |
| TCCATCACGAAGGACAACTG+CGG | 0.734942 | 5.2:-77045103 | None:intergenic |
| GTTCAACGGGTGATGCAATG+GGG | 0.750923 | 5.2:+77045415 | MS.gene48039:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATTATGATTCTATATT+AGG | + | chr5.2:77044913-77044932 | MS.gene48039:CDS | 15.0% |
| !! | TTCTGTTTGGATATATATTT+AGG | + | chr5.2:77045319-77045338 | MS.gene48039:intron | 20.0% |
| !!! | GATAATTAATTGATTCTGTT+TGG | + | chr5.2:77045306-77045325 | MS.gene48039:intron | 20.0% |
| !!! | TATATCTGGAAATTTTTGTT+CGG | + | chr5.2:77045515-77045534 | MS.gene48039:CDS | 20.0% |
| !!! | TTAACAAACACTTTTTTCTT+CGG | + | chr5.2:77044466-77044485 | MS.gene48039:CDS | 20.0% |
| !!! | TTTTGTTGAAATAACTCATT+TGG | + | chr5.2:77045284-77045303 | MS.gene48039:intron | 20.0% |
| ! | AACATGCTTAAAAATCTTAC+TGG | + | chr5.2:77045663-77045682 | MS.gene48039:CDS | 25.0% |
| ! | TGTAAAGCTATTTATGTTTC+CGG | + | chr5.2:77045072-77045091 | MS.gene48039:CDS | 25.0% |
| ! | TTTGTTAAGTAAAGTGAAGA+AGG | - | chr5.2:77044454-77044473 | None:intergenic | 25.0% |
| !! | TTCTCAGTTGAAATTCTTTT+TGG | + | chr5.2:77045170-77045189 | MS.gene48039:CDS | 25.0% |
| !!! | CTTAATTTACTTGGTGTTAA+GGG | + | chr5.2:77045918-77045937 | MS.gene48039:CDS | 25.0% |
| !!! | TATTGTTTCTGCTATTTACT+TGG | + | chr5.2:77045734-77045753 | MS.gene48039:CDS | 25.0% |
| !!! | TCTTAATTTACTTGGTGTTA+AGG | + | chr5.2:77045917-77045936 | MS.gene48039:CDS | 25.0% |
| AGTATTAAAGCTACTATAGC+AGG | + | chr5.2:77045366-77045385 | MS.gene48039:CDS | 30.0% | |
| ATGGATGTTATTGGTATATC+TGG | + | chr5.2:77045501-77045520 | MS.gene48039:CDS | 30.0% | |
| GAGATGGAATCAAAATTTAG+AGG | - | chr5.2:77045201-77045220 | None:intergenic | 30.0% | |
| TAGATCTGTTGTATTTCATG+TGG | - | chr5.2:77046064-77046083 | None:intergenic | 30.0% | |
| TCAGCTTGTCTTAATTTACT+TGG | + | chr5.2:77045909-77045928 | MS.gene48039:CDS | 30.0% | |
| TCATAATCAAAACCTTCCAA+TGG | - | chr5.2:77044904-77044923 | None:intergenic | 30.0% | |
| ! | TCGACAAAACTTTTTGAACA+AGG | - | chr5.2:77044735-77044754 | None:intergenic | 30.0% |
| !! | TGTTCAAAAAGTTTTGTCGA+TGG | + | chr5.2:77044735-77044754 | MS.gene48039:CDS | 30.0% |
| AAAGCTATTTATGTTTCCGG+TGG | + | chr5.2:77045075-77045094 | MS.gene48039:CDS | 35.0% | |
| AACATCCATGTCAGGAAAAT+CGG | - | chr5.2:77045490-77045509 | None:intergenic | 35.0% | |
| ACTAGATTCACTTGTTCAAC+GGG | + | chr5.2:77045402-77045421 | MS.gene48039:CDS | 35.0% | |
| AGAAAGCTGTAAGGTAGATT+AGG | - | chr5.2:77044612-77044631 | None:intergenic | 35.0% | |
| ATACCAATAACATCCATGTC+AGG | - | chr5.2:77045498-77045517 | None:intergenic | 35.0% | |
| ATCATTAACAGCTTCCATCA+TGG | - | chr5.2:77045808-77045827 | None:intergenic | 35.0% | |
| ATCTACCTTACAGCTTTCTT+CGG | + | chr5.2:77044613-77044632 | MS.gene48039:CDS | 35.0% | |
| CACTAGATTCACTTGTTCAA+CGG | + | chr5.2:77045401-77045420 | MS.gene48039:CDS | 35.0% | |
| CTTCTTCTTCATCGTAATGA+AGG | - | chr5.2:77044651-77044670 | None:intergenic | 35.0% | |
| CTTGTTGAATGTATGAGAGA+TGG | - | chr5.2:77045217-77045236 | None:intergenic | 35.0% | |
| TCGCATACTTTCTTCTTAAC+CGG | + | chr5.2:77044503-77044522 | MS.gene48039:CDS | 35.0% | |
| TGGAGGGATCAGAATATATT+TGG | - | chr5.2:77044387-77044406 | None:intergenic | 35.0% | |
| TTCATCGTAATGAAGGATGA+AGG | - | chr5.2:77044644-77044663 | None:intergenic | 35.0% | |
| TTCTCATTGTATGACCATGA+TGG | + | chr5.2:77045791-77045810 | MS.gene48039:CDS | 35.0% | |
| TTTCCTGACATGGATGTTAT+TGG | + | chr5.2:77045492-77045511 | MS.gene48039:CDS | 35.0% | |
| ! | AATAGCTTTACAACCTCTGT+TGG | - | chr5.2:77045064-77045083 | None:intergenic | 35.0% |
| ! | AATAGGGTTTGTTCAGATTC+CGG | + | chr5.2:77044954-77044973 | MS.gene48039:CDS | 35.0% |
| ! | ATGATGGAAGCTGTTAATGA+TGG | + | chr5.2:77045807-77045826 | MS.gene48039:CDS | 35.0% |
| ! | GTTAAGAAGAAAGTATGCGA+CGG | - | chr5.2:77044503-77044522 | None:intergenic | 35.0% |
| !! | TTGTAGCTTTGGATTGACTT+CGG | - | chr5.2:77044704-77044723 | None:intergenic | 35.0% |
| !!! | TTCTTCTTTGTTTTGCTGGA+GGG | - | chr5.2:77044403-77044422 | None:intergenic | 35.0% |
| !!! | TTGGTTCTTCTTTGTTTTGC+TGG | - | chr5.2:77044407-77044426 | None:intergenic | 35.0% |
| AGGATTTCCTGTTGTAGCTT+TGG | - | chr5.2:77044715-77044734 | None:intergenic | 40.0% | |
| AGTCAATCCAAAGCTACAAC+AGG | + | chr5.2:77044705-77044724 | MS.gene48039:CDS | 40.0% | |
| CATACTTTCTTCTTAACCGG+TGG | + | chr5.2:77044506-77044525 | MS.gene48039:CDS | 40.0% | |
| CGAGGCTGTAATTAAAGAAG+AGG | + | chr5.2:77045593-77045612 | MS.gene48039:CDS | 40.0% | |
| CTATTGGCAACTATAGTAGC+TGG | + | chr5.2:77045975-77045994 | MS.gene48039:CDS | 40.0% | |
| CTTGAAGGTTTACCATTGGA+AGG | + | chr5.2:77044889-77044908 | MS.gene48039:CDS | 40.0% | |
| GCATAGTGACTGAGATATGA+AGG | - | chr5.2:77045839-77045858 | None:intergenic | 40.0% | |
| GGAATCTGAACAAACCCTAT+TGG | - | chr5.2:77044955-77044974 | None:intergenic | 40.0% | |
| GGCTGTAATTAAAGAAGAGG+TGG | + | chr5.2:77045596-77045615 | MS.gene48039:CDS | 40.0% | |
| GGGATGAACATGGTATCAAA+AGG | + | chr5.2:77045435-77045454 | MS.gene48039:CDS | 40.0% | |
| GTCACTTGAAGGTTTACCAT+TGG | + | chr5.2:77044885-77044904 | MS.gene48039:CDS | 40.0% | |
| TAAAGAATACACCGTGCCAA+TGG | + | chr5.2:77045008-77045027 | MS.gene48039:CDS | 40.0% | |
| TACAATTAGGAACCAAGCTG+TGG | + | chr5.2:77044846-77044865 | MS.gene48039:CDS | 40.0% | |
| TCTTTACCATCGAGCAACAA+AGG | - | chr5.2:77044994-77045013 | None:intergenic | 40.0% | |
| TGCAACTAAACAACCTTCAG+TGG | - | chr5.2:77045037-77045056 | None:intergenic | 40.0% | |
| TTAGTTGCAAGTACCAACAG+AGG | + | chr5.2:77045048-77045067 | MS.gene48039:CDS | 40.0% | |
| TTCGATTCAAGCGAGTAAGA+TGG | - | chr5.2:77044802-77044821 | None:intergenic | 40.0% | |
| ! | CAACTGAGAAGCTCTTTTAG+CGG | - | chr5.2:77045160-77045179 | None:intergenic | 40.0% |
| ! | GAACTCTCAACATTTTGAGC+AGG | - | chr5.2:77045774-77045793 | None:intergenic | 40.0% |
| ! | TCTGCTATTTACTTGGCAAC+TGG | + | chr5.2:77045741-77045760 | MS.gene48039:CDS | 40.0% |
| !! | AAATCTTACTGGTTCAGCCA+TGG | + | chr5.2:77045674-77045693 | MS.gene48039:CDS | 40.0% |
| !! | GAAAGTGTTGAAGACTAGTG+TGG | + | chr5.2:77045623-77045642 | MS.gene48039:CDS | 40.0% |
| !! | TCAAACCGATTTTCCTGACA+TGG | + | chr5.2:77045482-77045501 | MS.gene48039:CDS | 40.0% |
| !!! | ACAGTGAATTCTGCTGCTTT+TGG | - | chr5.2:77044426-77044445 | None:intergenic | 40.0% |
| !!! | GTTCTTCTTTGTTTTGCTGG+AGG | - | chr5.2:77044404-77044423 | None:intergenic | 40.0% |
| ACTATGCCTTCCATTGAGGT+GGG | + | chr5.2:77045852-77045871 | MS.gene48039:CDS | 45.0% | |
| AGCGGAGTTGAATCTTACGA+CGG | - | chr5.2:77045142-77045161 | None:intergenic | 45.0% | |
| AGGAGCAAACTCTAGGCTAT+TGG | + | chr5.2:77045959-77045978 | MS.gene48039:CDS | 45.0% | |
| AGTCACTATGCCTTCCATTG+AGG | + | chr5.2:77045848-77045867 | MS.gene48039:CDS | 45.0% | |
| AGTGTTGCGAGATGCCAATA+GGG | + | chr5.2:77044938-77044957 | MS.gene48039:CDS | 45.0% | |
| GGAAACTAGAGCGAGAATCT+CGG | - | chr5.2:77044578-77044597 | None:intergenic | 45.0% | |
| GGAAGCTGTTAATGATGGCA+AGG | + | chr5.2:77045812-77045831 | MS.gene48039:CDS | 45.0% | |
| GTAGATTAGGCAAGCAGTGA+GGG | - | chr5.2:77044599-77044618 | None:intergenic | 45.0% | |
| GTGAATTGGATTGAAGGGAG+AGG | + | chr5.2:77045555-77045574 | MS.gene48039:CDS | 45.0% | |
| GTTACTGGAAGGTCACTTGA+AGG | + | chr5.2:77044874-77044893 | MS.gene48039:CDS | 45.0% | |
| TACTCGCTTGAATCGAAGCT+TGG | + | chr5.2:77044805-77044824 | MS.gene48039:CDS | 45.0% | |
| TCATGTCTGCAATTGCAGCT+GGG | + | chr5.2:77046024-77046043 | MS.gene48039:CDS | 45.0% | |
| TCCTAATTGTAGCAGCACGT+CGG | - | chr5.2:77044837-77044856 | None:intergenic | 45.0% | |
| TGAAGGGAGAGGTAAATCAG+TGG | + | chr5.2:77045566-77045585 | MS.gene48039:CDS | 45.0% | |
| TGATGCAATGGGGATGAACA+TGG | + | chr5.2:77045425-77045444 | MS.gene48039:CDS | 45.0% | |
| TGTTCAACGGGTGATGCAAT+GGG | + | chr5.2:77045414-77045433 | MS.gene48039:CDS | 45.0% | |
| TTGTTCAACGGGTGATGCAA+TGG | + | chr5.2:77045413-77045432 | MS.gene48039:CDS | 45.0% | |
| TTGTTCGGACAAGAAAGCTG+CGG | + | chr5.2:77045530-77045549 | MS.gene48039:CDS | 45.0% | |
| ! | AATAGCCTAGAGTTTGCTCC+TGG | - | chr5.2:77045960-77045979 | None:intergenic | 45.0% |
| !! | AGTTTTGTCGATGGAAGACG+AGG | + | chr5.2:77044744-77044763 | MS.gene48039:CDS | 45.0% |
| !! | TAGCTTTGGATTGACTTCGG+TGG | - | chr5.2:77044701-77044720 | None:intergenic | 45.0% |
| ACCATCGAGCAACAAAGGAC+CGG | - | chr5.2:77044989-77045008 | None:intergenic | 50.0% | |
| AGACTCCAGGAGCAAACTCT+AGG | + | chr5.2:77045952-77045971 | MS.gene48039:CDS | 50.0% | |
| AGGTAAATCAGTGGTGTGCG+AGG | + | chr5.2:77045575-77045594 | MS.gene48039:CDS | 50.0% | |
| ATGGAAGACGAGGAGGTTGT+TGG | + | chr5.2:77044754-77044773 | MS.gene48039:CDS | 50.0% | |
| CAACCTTCAGTGGTTGCCAT+TGG | - | chr5.2:77045027-77045046 | None:intergenic | 50.0% | |
| CAACGCCGAAGAAAGCTGTA+AGG | - | chr5.2:77044621-77044640 | None:intergenic | 50.0% | |
| CAAGCTGTGGAGAGAGTTAC+TGG | + | chr5.2:77044859-77044878 | MS.gene48039:CDS | 50.0% | |
| CACTATGCCTTCCATTGAGG+TGG | + | chr5.2:77045851-77045870 | MS.gene48039:CDS | 50.0% | |
| CAGTAACTCTCTCCACAGCT+TGG | - | chr5.2:77044861-77044880 | None:intergenic | 50.0% | |
| CAGTGTTGCGAGATGCCAAT+AGG | + | chr5.2:77044937-77044956 | MS.gene48039:CDS | 50.0% | |
| CGAGAATCTCGGAGATTGTG+AGG | - | chr5.2:77044567-77044586 | None:intergenic | 50.0% | |
| CGGAGTTGAATCTTACGACG+GGG | - | chr5.2:77045140-77045159 | None:intergenic | 50.0% | |
| CGGCGGTGAATTGGATTGAA+GGG | + | chr5.2:77045550-77045569 | MS.gene48039:CDS | 50.0% | |
| CTCATGTCTGCAATTGCAGC+TGG | + | chr5.2:77046023-77046042 | MS.gene48039:CDS | 50.0% | |
| CTCTGGTCATTCCATCACGA+AGG | - | chr5.2:77045116-77045135 | None:intergenic | 50.0% | |
| CTGTGGAGAGAGTTACTGGA+AGG | + | chr5.2:77044863-77044882 | MS.gene48039:CDS | 50.0% | |
| GAAGACTAGTGTGGCGTCTT+TGG | + | chr5.2:77045632-77045651 | MS.gene48039:CDS | 50.0% | |
| GAGATTGTGAGGACATGGAG+AGG | - | chr5.2:77044556-77044575 | None:intergenic | 50.0% | |
| GCGGAGTTGAATCTTACGAC+GGG | - | chr5.2:77045141-77045160 | None:intergenic | 50.0% | |
| GGAGCTAGTAAAGAGACTCC+AGG | + | chr5.2:77045939-77045958 | MS.gene48039:CDS | 50.0% | |
| GGAGTTGAATCTTACGACGG+GGG | - | chr5.2:77045139-77045158 | None:intergenic | 50.0% | |
| GGTAGATTAGGCAAGCAGTG+AGG | - | chr5.2:77044600-77044619 | None:intergenic | 50.0% | |
| GTTCAACGGGTGATGCAATG+GGG | + | chr5.2:77045415-77045434 | MS.gene48039:CDS | 50.0% | |
| TCCATCACGAAGGACAACTG+CGG | - | chr5.2:77045106-77045125 | None:intergenic | 50.0% | |
| TCTCGGAGATTGTGAGGACA+TGG | - | chr5.2:77044561-77044580 | None:intergenic | 50.0% | |
| TTCAGTGGTTGCCATTGGCA+CGG | - | chr5.2:77045022-77045041 | None:intergenic | 50.0% | |
| TTTGTCGATGGAAGACGAGG+AGG | + | chr5.2:77044747-77044766 | MS.gene48039:CDS | 50.0% | |
| ! | AGGGTTTGTTCAGATTCCGG+TGG | + | chr5.2:77044957-77044976 | MS.gene48039:CDS | 50.0% |
| ! | CATGGAGAGGTGTAGAGGTT+CGG | - | chr5.2:77044543-77044562 | None:intergenic | 50.0% |
| ! | GGGTTTGTTCAGATTCCGGT+GGG | + | chr5.2:77044958-77044977 | MS.gene48039:CDS | 50.0% |
| ! | TTCGGATCTTTTCACGCCAC+CGG | - | chr5.2:77044525-77044544 | None:intergenic | 50.0% |
| ACTGTGCCCACCTCAATGGA+AGG | - | chr5.2:77045861-77045880 | None:intergenic | 55.0% | |
| AGAAAGCTGCGGCGGTGAAT+TGG | + | chr5.2:77045541-77045560 | MS.gene48039:CDS | 55.0% | |
| ATTGAGGTGGGCACAGTTGG+AGG | + | chr5.2:77045864-77045883 | MS.gene48039:CDS | 55.0% | |
| GCGGCGGTGAATTGGATTGA+AGG | + | chr5.2:77045549-77045568 | MS.gene48039:CDS | 55.0% | |
| GTGCCAATGGCAACCACTGA+AGG | + | chr5.2:77045021-77045040 | MS.gene48039:CDS | 55.0% | |
| GTTGTTGGTGCAGTGGTGTC+TGG | + | chr5.2:77044769-77044788 | MS.gene48039:CDS | 55.0% | |
| TCCAACTGTGCCCACCTCAA+TGG | - | chr5.2:77045865-77045884 | None:intergenic | 55.0% | |
| TCCATTGAGGTGGGCACAGT+TGG | + | chr5.2:77045861-77045880 | MS.gene48039:CDS | 55.0% | |
| TCCGCAGTTGTCCTTCGTGA+TGG | + | chr5.2:77045102-77045121 | MS.gene48039:CDS | 55.0% | |
| TGAGTGAGAGCTCTCCTGCA+AGG | - | chr5.2:77046007-77046026 | None:intergenic | 55.0% | |
| TTCGGACAAGAAAGCTGCGG+CGG | + | chr5.2:77045533-77045552 | MS.gene48039:CDS | 55.0% | |
| TTGAGGTGGGCACAGTTGGA+GGG | + | chr5.2:77045865-77045884 | MS.gene48039:CDS | 55.0% | |
| ! | GAGGACATGGAGAGGTGTAG+AGG | - | chr5.2:77044548-77044567 | None:intergenic | 55.0% |
| ! | GCCGACGTGCTGCTACAATT+AGG | + | chr5.2:77044833-77044852 | MS.gene48039:CDS | 55.0% |
| ! | GTAGCTGGTTCAGTCCTTGC+AGG | + | chr5.2:77045990-77046009 | MS.gene48039:CDS | 55.0% |
| !! | CTTACTGGTTCAGCCATGGC+TGG | + | chr5.2:77045678-77045697 | MS.gene48039:CDS | 55.0% |
| AAAGGACCGGCAACACCCAC+CGG | - | chr5.2:77044976-77044995 | None:intergenic | 60.0% | |
| CGAGGAGGTTGTTGGTGCAG+TGG | + | chr5.2:77044762-77044781 | MS.gene48039:CDS | 60.0% | |
| GAATCTTACGACGGGGGCTC+TGG | - | chr5.2:77045133-77045152 | None:intergenic | 60.0% | |
| GCCGGTCCTTTGTTGCTCGA+TGG | + | chr5.2:77044985-77045004 | MS.gene48039:CDS | 60.0% | |
| TCAGCCATGGCTGGTGCTCT+TGG | + | chr5.2:77045687-77045706 | MS.gene48039:CDS | 60.0% | |
| TGAGGTGGGCACAGTTGGAG+GGG | + | chr5.2:77045866-77045885 | MS.gene48039:CDS | 60.0% | |
| ! | CAGATTCCGGTGGGTGTTGC+CGG | + | chr5.2:77044967-77044986 | MS.gene48039:CDS | 60.0% |
| !! | GACAACTGCGGAAGCACCAC+CGG | - | chr5.2:77045094-77045113 | None:intergenic | 60.0% |
| GAGGTGGGCACAGTTGGAGG+GGG | + | chr5.2:77045867-77045886 | MS.gene48039:CDS | 65.0% | |
| GCCATGGCTGGTGCTCTTGG+TGG | + | chr5.2:77045690-77045709 | MS.gene48039:CDS | 65.0% | |
| !! | GCCACCAAGAGCACCAGCCA+TGG | - | chr5.2:77045694-77045713 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 77044370 | 77046112 | 77044370 | ID=MS.gene48039 |
| chr5.2 | mRNA | 77044370 | 77046112 | 77044370 | ID=MS.gene48039.t1;Parent=MS.gene48039 |
| chr5.2 | exon | 77044370 | 77045235 | 77044370 | ID=MS.gene48039.t1.exon1;Parent=MS.gene48039.t1 |
| chr5.2 | CDS | 77044370 | 77045235 | 77044370 | ID=cds.MS.gene48039.t1;Parent=MS.gene48039.t1 |
| chr5.2 | exon | 77045341 | 77046112 | 77045341 | ID=MS.gene48039.t1.exon2;Parent=MS.gene48039.t1 |
| chr5.2 | CDS | 77045341 | 77046112 | 77045341 | ID=cds.MS.gene48039.t1;Parent=MS.gene48039.t1 |
| Gene Sequence |
| Protein sequence |
