Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057100.t1 | XP_003617390.1 | 96.9 | 545 | 17 | 0 | 1 | 545 | 1 | 545 | 1.40E-289 | 1005 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057100.t1 | Q41438 | 72.2 | 554 | 133 | 3 | 10 | 542 | 21 | 574 | 2.6e-220 | 766.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057100.t1 | A9YVC4 | 96.9 | 545 | 17 | 0 | 1 | 545 | 1 | 545 | 9.8e-290 | 1005.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057100 | MS.gene065183 | 0.813302 | 2.74E-51 | -1.69E-46 |
| MS.gene057100 | MS.gene33980 | 0.829395 | 5.27E-55 | -1.69E-46 |
| MS.gene057100 | MS.gene48039 | 0.94158 | 3.25E-101 | -1.69E-46 |
| MS.gene057100 | MS.gene97437 | 0.817653 | 2.95E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057100.t1 | MTR_5g091050 | 96.881 | 545 | 17 | 0 | 1 | 545 | 1 | 545 | 0.0 | 1090 |
| MS.gene057100.t1 | MTR_5g026450 | 91.205 | 523 | 37 | 2 | 29 | 545 | 23 | 542 | 0.0 | 972 |
| MS.gene057100.t1 | MTR_5g026460 | 91.205 | 523 | 37 | 2 | 29 | 545 | 23 | 542 | 0.0 | 972 |
| MS.gene057100.t1 | MTR_5g026480 | 91.205 | 523 | 37 | 2 | 29 | 545 | 23 | 542 | 0.0 | 972 |
| MS.gene057100.t1 | MTR_5g026430 | 91.205 | 523 | 37 | 2 | 29 | 545 | 23 | 542 | 0.0 | 971 |
| MS.gene057100.t1 | MTR_5g026500 | 87.659 | 551 | 61 | 3 | 1 | 545 | 1 | 550 | 0.0 | 954 |
| MS.gene057100.t1 | MTR_5g024880 | 83.944 | 573 | 58 | 8 | 1 | 545 | 1 | 567 | 0.0 | 947 |
| MS.gene057100.t1 | MTR_8g072640 | 73.413 | 583 | 117 | 6 | 1 | 545 | 1 | 583 | 0.0 | 857 |
| MS.gene057100.t1 | MTR_5g087550 | 76.236 | 526 | 117 | 2 | 28 | 545 | 40 | 565 | 0.0 | 811 |
| MS.gene057100.t1 | MTR_5g024880 | 81.781 | 494 | 56 | 8 | 1 | 466 | 1 | 488 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057100.t1 | AT1G76490 | 72.316 | 531 | 130 | 3 | 28 | 541 | 102 | 632 | 0.0 | 805 |
| MS.gene057100.t1 | AT2G17370 | 69.623 | 530 | 135 | 4 | 28 | 540 | 34 | 554 | 0.0 | 767 |
Find 131 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTATGATTCTATATT+AGG | 0.182370 | 5.3:+73182912 | MS.gene057100:CDS |
| TGTAAAGCTATTTATGTTTC+CGG | 0.227444 | 5.3:+73183071 | MS.gene057100:CDS |
| TTTCCTGACATGGATGTTAT+TGG | 0.259684 | 5.3:+73183491 | MS.gene057100:CDS |
| TGGAGGGATCAGAATATATT+TGG | 0.271951 | 5.3:-73182383 | None:intergenic |
| CAGATTCCGGTGGGTGTTGC+CGG | 0.292180 | 5.3:+73182966 | MS.gene057100:CDS |
| CAAGCTGTGGAGAGAGTTAC+TGG | 0.312644 | 5.3:+73182858 | MS.gene057100:CDS |
| ATGGATGTTATTGGTATATC+TGG | 0.323945 | 5.3:+73183500 | MS.gene057100:CDS |
| CTTAATTTACTTGGTGTTAA+GGG | 0.331705 | 5.3:+73183917 | MS.gene057100:CDS |
| AGGATTTCCTGTTGTAGCTT+TGG | 0.332478 | 5.3:-73182711 | None:intergenic |
| TCAGCCATGGCTGGTGCTCT+TGG | 0.340875 | 5.3:+73183686 | MS.gene057100:CDS |
| GTTGTTGGTGCAGTGGTGTC+TGG | 0.343470 | 5.3:+73182768 | MS.gene057100:CDS |
| ACAGTGAATTCTGCTGCTTT+TGG | 0.360301 | 5.3:-73182422 | None:intergenic |
| GAAGACTAGTGTGGCGTCTT+TGG | 0.361120 | 5.3:+73183631 | MS.gene057100:CDS |
| TCTTAATTTACTTGGTGTTA+AGG | 0.367100 | 5.3:+73183916 | MS.gene057100:CDS |
| AACATCCATGTCAGGAAAAT+CGG | 0.371639 | 5.3:-73183486 | None:intergenic |
| ATTGAGGTGGGCACAGTTGG+AGG | 0.372888 | 5.3:+73183863 | MS.gene057100:CDS |
| AGAAAGCTGCGGCGGTGAAT+TGG | 0.374911 | 5.3:+73183540 | MS.gene057100:CDS |
| TATTGTTTCTGCTATTTACT+TGG | 0.376885 | 5.3:+73183733 | MS.gene057100:CDS |
| TCCATTGAGGTGGGCACAGT+TGG | 0.389581 | 5.3:+73183860 | MS.gene057100:CDS |
| CAATGTTGCGAGATGCCAAT+AGG | 0.397291 | 5.3:+73182936 | MS.gene057100:CDS |
| CTCATGTCTGCAATTGCAGC+TGG | 0.399313 | 5.3:+73184022 | MS.gene057100:CDS |
| ATCTACCTTACAGCTTTCTT+CGG | 0.403450 | 5.3:+73182612 | MS.gene057100:CDS |
| TCTGCTATTTACTTGGCAAC+TGG | 0.403532 | 5.3:+73183740 | MS.gene057100:CDS |
| GCCGACGTGCGGCTGTGATT+AGG | 0.407481 | 5.3:+73182832 | MS.gene057100:CDS |
| TCGCATACTTTATTCTTAAC+CGG | 0.410629 | 5.3:+73182502 | MS.gene057100:CDS |
| TTTGTTAAGTAAAGTGAAGA+AGG | 0.418114 | 5.3:-73182450 | None:intergenic |
| AATAGGGTTTGTTCAGATTC+CGG | 0.419719 | 5.3:+73182953 | MS.gene057100:CDS |
| GTAGCTGGTTCAGTCCTTGC+AGG | 0.419905 | 5.3:+73183989 | MS.gene057100:CDS |
| ACTAGATTCACTTGTTCAAC+GGG | 0.423690 | 5.3:+73183401 | MS.gene057100:CDS |
| AGGAGCAAACTCTAGGCTAT+TGG | 0.434686 | 5.3:+73183958 | MS.gene057100:CDS |
| CTTCTTCTTCATCGTAATGA+AGG | 0.434927 | 5.3:-73182647 | None:intergenic |
| GCCATGGCTGGTGCTCTTGG+TGG | 0.436980 | 5.3:+73183689 | MS.gene057100:CDS |
| TCAGCTTGTCTTAATTTACT+TGG | 0.450033 | 5.3:+73183908 | MS.gene057100:CDS |
| TGTTCAACGGGTGATGCAAT+GGG | 0.450595 | 5.3:+73183413 | MS.gene057100:CDS |
| TCCATCTCATGAAGCAACTT+TGG | 0.453618 | 5.3:-73184095 | None:intergenic |
| GAAGAAGAAGATGAAGTTGC+TGG | 0.461162 | 5.3:+73182660 | MS.gene057100:CDS |
| AGAAAGCTGTAAGGTAGATT+AGG | 0.466477 | 5.3:-73182608 | None:intergenic |
| GGAATCTGAACAAACCCTAT+TGG | 0.468578 | 5.3:-73182951 | None:intergenic |
| TACTCGCTTGAATCGAAGCT+TGG | 0.474728 | 5.3:+73182804 | MS.gene057100:CDS |
| GACAACTGCGGAAGCACCAC+CGG | 0.475138 | 5.3:-73183090 | None:intergenic |
| TCCAACTGTGCCCACCTCAA+TGG | 0.476267 | 5.3:-73183861 | None:intergenic |
| AATAGCCTAGAGTTTGCTCC+TGG | 0.480778 | 5.3:-73183956 | None:intergenic |
| CACTAGATTCACTTGTTCAA+CGG | 0.483222 | 5.3:+73183400 | MS.gene057100:CDS |
| GTTACTGGAAGGTCACTTGA+AGG | 0.484214 | 5.3:+73182873 | MS.gene057100:CDS |
| TTGAGGTGGGCACAGTTGGA+GGG | 0.484663 | 5.3:+73183864 | MS.gene057100:CDS |
| AGTATTAAAGCTACTATAGC+AGG | 0.485421 | 5.3:+73183365 | MS.gene057100:CDS |
| AAAGGACCGGCAACACCCAC+CGG | 0.486844 | 5.3:-73182972 | None:intergenic |
| ATGGAAGACAAGGAGGTTGT+TGG | 0.489581 | 5.3:+73182753 | MS.gene057100:CDS |
| TGAGGTGGGCACAGTTGGAG+GGG | 0.493167 | 5.3:+73183865 | MS.gene057100:CDS |
| GAGATGGAATCAAAATTTAG+AGG | 0.495960 | 5.3:-73183197 | None:intergenic |
| CATGAAGAGGTGTAGAGGTT+CGG | 0.496244 | 5.3:-73182539 | None:intergenic |
| TTGTTCAACGGGTGATGCAA+TGG | 0.497983 | 5.3:+73183412 | MS.gene057100:CDS |
| AATGTTGCGAGATGCCAATA+GGG | 0.503985 | 5.3:+73182937 | MS.gene057100:CDS |
| CAACCTTCAGTGGTTGCCAT+TGG | 0.505213 | 5.3:-73183023 | None:intergenic |
| AGTCAATCCAAAGCTACAAC+AGG | 0.505657 | 5.3:+73182704 | MS.gene057100:CDS |
| TCCGCAGTTGTCCTTCGTGA+TGG | 0.511896 | 5.3:+73183101 | MS.gene057100:CDS |
| AATAGCTTTACAACCTCTGT+TGG | 0.514525 | 5.3:-73183060 | None:intergenic |
| TAGATCTGTTGTATTTCATG+TGG | 0.514983 | 5.3:-73184060 | None:intergenic |
| GTAGATTAGGCAAGCAATGA+GGG | 0.515002 | 5.3:-73182595 | None:intergenic |
| CACTATGCCTTCCATTGAGG+TGG | 0.515478 | 5.3:+73183850 | MS.gene057100:CDS |
| GGGATGAACATGGTATCAAA+AGG | 0.522120 | 5.3:+73183434 | MS.gene057100:CDS |
| GCCGGTCCTTTGTTGCTCGA+TGG | 0.525821 | 5.3:+73182984 | MS.gene057100:CDS |
| GAGGTGGGCACAGTTGGAGG+GGG | 0.525880 | 5.3:+73183866 | MS.gene057100:CDS |
| CTTACTGGTTCAGCCATGGC+TGG | 0.527929 | 5.3:+73183677 | MS.gene057100:CDS |
| GCGGCGGTGAATTGGATTGA+AGG | 0.530179 | 5.3:+73183548 | MS.gene057100:CDS |
| CAGTAACTCTCTCCACAGCT+TGG | 0.536806 | 5.3:-73182857 | None:intergenic |
| GCATAGTGACTGAGATATGA+AGG | 0.538116 | 5.3:-73183835 | None:intergenic |
| GCCACCAAGAGCACCAGCCA+TGG | 0.539071 | 5.3:-73183690 | None:intergenic |
| CTATTGGCAACTATAGTAGC+TGG | 0.539688 | 5.3:+73183974 | MS.gene057100:CDS |
| ATCATTAACAGCTTCCATCA+TGG | 0.543666 | 5.3:-73183804 | None:intergenic |
| TTGTAGCTTTGGATTGACTT+CGG | 0.543867 | 5.3:-73182700 | None:intergenic |
| AGACTCCAGGAGCAAACTCT+AGG | 0.544017 | 5.3:+73183951 | MS.gene057100:CDS |
| ATACCAATAACATCCATGTC+AGG | 0.544139 | 5.3:-73183494 | None:intergenic |
| CTTGAAGGTTTACCAATGGA+AGG | 0.548186 | 5.3:+73182888 | MS.gene057100:CDS |
| GTCACTTGAAGGTTTACCAA+TGG | 0.549038 | 5.3:+73182884 | MS.gene057100:CDS |
| TGCAACTAAACAACCTTCAG+TGG | 0.550714 | 5.3:-73183033 | None:intergenic |
| TCATAATCAAAACCTTCCAT+TGG | 0.551011 | 5.3:-73182900 | None:intergenic |
| TTCAGTGGTTGCCATTGGCA+CGG | 0.554461 | 5.3:-73183018 | None:intergenic |
| CTTGTTGAATGTATGAGAGA+TGG | 0.555113 | 5.3:-73183213 | None:intergenic |
| GCGGAGTTGAATCTTACGAC+GGG | 0.556400 | 5.3:-73183137 | None:intergenic |
| AAATCTTACTGGTTCAGCCA+TGG | 0.557583 | 5.3:+73183673 | MS.gene057100:CDS |
| TTCATCGTAATGAAGGATGA+AGG | 0.561519 | 5.3:-73182640 | None:intergenic |
| GGAAACTAGAGCGAGAATCT+CGG | 0.563787 | 5.3:-73182574 | None:intergenic |
| ACCATCGAGCAACAAAGGAC+CGG | 0.565288 | 5.3:-73182985 | None:intergenic |
| GTGCCAATGGCAACCACTGA+AGG | 0.569007 | 5.3:+73183020 | MS.gene057100:CDS |
| CGAGGCTGTAATTAAAGAAG+AGG | 0.579510 | 5.3:+73183592 | MS.gene057100:CDS |
| AGTCACTATGCCTTCCATTG+AGG | 0.579598 | 5.3:+73183847 | MS.gene057100:CDS |
| TTCTCATTGTATGACCATGA+TGG | 0.582723 | 5.3:+73183790 | MS.gene057100:CDS |
| CAACGCCGAAGAAAGCTGTA+AGG | 0.585113 | 5.3:-73182617 | None:intergenic |
| TAAAGAATACACCGTGCCAA+TGG | 0.585969 | 5.3:+73183007 | MS.gene057100:CDS |
| TCATGTCTGCAATTGCAGCT+GGG | 0.586024 | 5.3:+73184023 | MS.gene057100:CDS |
| GGAGCTAGTAAAGAGACTCC+AGG | 0.592509 | 5.3:+73183938 | MS.gene057100:CDS |
| GGTAGATTAGGCAAGCAATG+AGG | 0.594727 | 5.3:-73182596 | None:intergenic |
| CGAGAATCTCGGAGATTGTG+AGG | 0.594968 | 5.3:-73182563 | None:intergenic |
| TTCGATTCAAGCGAGTAAGA+TGG | 0.597340 | 5.3:-73182798 | None:intergenic |
| GCTTGGAGATTGCCGACGTG+CGG | 0.597443 | 5.3:+73182821 | MS.gene057100:CDS |
| CGGCGGTGAATTGGATTGAA+GGG | 0.597484 | 5.3:+73183549 | MS.gene057100:CDS |
| TCTTTACCATCGAGCAACAA+AGG | 0.602437 | 5.3:-73182990 | None:intergenic |
| AGGGTTTGTTCAGATTCCGG+TGG | 0.604995 | 5.3:+73182956 | MS.gene057100:CDS |
| AGGTAAATCAGTGGTGTGCG+AGG | 0.607376 | 5.3:+73183574 | MS.gene057100:CDS |
| ACTGTGCCCACCTCAATGGA+AGG | 0.609074 | 5.3:-73183857 | None:intergenic |
| GGCTGTAATTAAAGAAGAGG+TGG | 0.610180 | 5.3:+73183595 | MS.gene057100:CDS |
| ATGATGGAAGCTGTTAATGA+TGG | 0.618580 | 5.3:+73183806 | MS.gene057100:CDS |
| TGAGTGAGAGCTCTCCTGCA+AGG | 0.619208 | 5.3:-73184003 | None:intergenic |
| GGGTTTGTTCAGATTCCGGT+GGG | 0.619817 | 5.3:+73182957 | MS.gene057100:CDS |
| TGATGCAATGGGGATGAACA+TGG | 0.620753 | 5.3:+73183424 | MS.gene057100:CDS |
| CAAGGAGGTTGTTGGTGCAG+TGG | 0.620918 | 5.3:+73182761 | MS.gene057100:CDS |
| TAGCTTTGGATTGACTTCGG+TGG | 0.623108 | 5.3:-73182697 | None:intergenic |
| GTGAATTGGATTGAAGGGAG+AGG | 0.624405 | 5.3:+73183554 | MS.gene057100:CDS |
| GAGATTGTGAGGACATGAAG+AGG | 0.625636 | 5.3:-73182552 | None:intergenic |
| ACTATGCCTTCCATTGAGGT+GGG | 0.631117 | 5.3:+73183851 | MS.gene057100:CDS |
| CATACTTTATTCTTAACCGG+TGG | 0.633129 | 5.3:+73182505 | MS.gene057100:CDS |
| TTCGGACAAGAAAGCTGCGG+CGG | 0.638658 | 5.3:+73183532 | MS.gene057100:CDS |
| GGAAGCTGTTAATGATGGCA+AGG | 0.638837 | 5.3:+73183811 | MS.gene057100:CDS |
| AGCGGAGTTGAATCTTACGA+CGG | 0.639019 | 5.3:-73183138 | None:intergenic |
| AAAGCTATTTATGTTTCCGG+TGG | 0.639838 | 5.3:+73183074 | MS.gene057100:CDS |
| TCCTAATCACAGCCGCACGT+CGG | 0.644445 | 5.3:-73182833 | None:intergenic |
| CGGAGTTGAATCTTACGACG+GGG | 0.648586 | 5.3:-73183136 | None:intergenic |
| GAGGACATGAAGAGGTGTAG+AGG | 0.650160 | 5.3:-73182544 | None:intergenic |
| CTGTGGAGAGAGTTACTGGA+AGG | 0.651029 | 5.3:+73182862 | MS.gene057100:CDS |
| GTTAAGAATAAAGTATGCGA+CGG | 0.659171 | 5.3:-73182499 | None:intergenic |
| TTGTTCGGACAAGAAAGCTG+CGG | 0.664622 | 5.3:+73183529 | MS.gene057100:CDS |
| CTCTGGTCATTCCATCACGA+AGG | 0.665834 | 5.3:-73183112 | None:intergenic |
| TTTGTCGATGGAAGACAAGG+AGG | 0.667725 | 5.3:+73182746 | MS.gene057100:CDS |
| TTAGTTGCAAGTACCAACAG+AGG | 0.672341 | 5.3:+73183047 | MS.gene057100:CDS |
| TGAAGGGAGAGGTAAATCAG+TGG | 0.678039 | 5.3:+73183565 | MS.gene057100:CDS |
| TGTGATTAGGAACCAAGCTG+TGG | 0.679418 | 5.3:+73182845 | MS.gene057100:CDS |
| GGAGTTGAATCTTACGACGG+GGG | 0.723640 | 5.3:-73183135 | None:intergenic |
| GAAAGTGTTGAAGACTAGTG+TGG | 0.728459 | 5.3:+73183622 | MS.gene057100:CDS |
| TCCATCACGAAGGACAACTG+CGG | 0.734942 | 5.3:-73183102 | None:intergenic |
| GTTCAACGGGTGATGCAATG+GGG | 0.750923 | 5.3:+73183414 | MS.gene057100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATTATGATTCTATATT+AGG | + | chr5.3:73182912-73182931 | MS.gene057100:CDS | 15.0% |
| !! | TTCTGTTTGGATATATATTT+AGG | + | chr5.3:73183318-73183337 | MS.gene057100:intron | 20.0% |
| !!! | GATAATTAATTGATTCTGTT+TGG | + | chr5.3:73183305-73183324 | MS.gene057100:intron | 20.0% |
| !!! | TATATCTGGAAATTTTTGTT+CGG | + | chr5.3:73183514-73183533 | MS.gene057100:CDS | 20.0% |
| !!! | TTAACAAACACTTTTTTCTT+CGG | + | chr5.3:73182465-73182484 | MS.gene057100:CDS | 20.0% |
| !!! | TTTTGTTGAAATAACTCATT+TGG | + | chr5.3:73183283-73183302 | MS.gene057100:intron | 20.0% |
| ! | AACATGCTTAAAAATCTTAC+TGG | + | chr5.3:73183662-73183681 | MS.gene057100:CDS | 25.0% |
| ! | TGTAAAGCTATTTATGTTTC+CGG | + | chr5.3:73183071-73183090 | MS.gene057100:CDS | 25.0% |
| ! | TTTGTTAAGTAAAGTGAAGA+AGG | - | chr5.3:73182453-73182472 | None:intergenic | 25.0% |
| !! | TTCTCAGTTGAAATTCTTTT+TGG | + | chr5.3:73183169-73183188 | MS.gene057100:CDS | 25.0% |
| !!! | CTTAATTTACTTGGTGTTAA+GGG | + | chr5.3:73183917-73183936 | MS.gene057100:CDS | 25.0% |
| !!! | TATTGTTTCTGCTATTTACT+TGG | + | chr5.3:73183733-73183752 | MS.gene057100:CDS | 25.0% |
| !!! | TCTTAATTTACTTGGTGTTA+AGG | + | chr5.3:73183916-73183935 | MS.gene057100:CDS | 25.0% |
| AGTATTAAAGCTACTATAGC+AGG | + | chr5.3:73183365-73183384 | MS.gene057100:CDS | 30.0% | |
| ATGGATGTTATTGGTATATC+TGG | + | chr5.3:73183500-73183519 | MS.gene057100:CDS | 30.0% | |
| GAGATGGAATCAAAATTTAG+AGG | - | chr5.3:73183200-73183219 | None:intergenic | 30.0% | |
| GTTAAGAATAAAGTATGCGA+CGG | - | chr5.3:73182502-73182521 | None:intergenic | 30.0% | |
| TAGATCTGTTGTATTTCATG+TGG | - | chr5.3:73184063-73184082 | None:intergenic | 30.0% | |
| TCAGCTTGTCTTAATTTACT+TGG | + | chr5.3:73183908-73183927 | MS.gene057100:CDS | 30.0% | |
| TCATAATCAAAACCTTCCAT+TGG | - | chr5.3:73182903-73182922 | None:intergenic | 30.0% | |
| TCGCATACTTTATTCTTAAC+CGG | + | chr5.3:73182502-73182521 | MS.gene057100:CDS | 30.0% | |
| ! | TCGACAAAACTTTTTGAACA+AGG | - | chr5.3:73182734-73182753 | None:intergenic | 30.0% |
| !! | TGTTCAAAAAGTTTTGTCGA+TGG | + | chr5.3:73182734-73182753 | MS.gene057100:CDS | 30.0% |
| AAAGCTATTTATGTTTCCGG+TGG | + | chr5.3:73183074-73183093 | MS.gene057100:CDS | 35.0% | |
| AACATCCATGTCAGGAAAAT+CGG | - | chr5.3:73183489-73183508 | None:intergenic | 35.0% | |
| ACTAGATTCACTTGTTCAAC+GGG | + | chr5.3:73183401-73183420 | MS.gene057100:CDS | 35.0% | |
| AGAAAGCTGTAAGGTAGATT+AGG | - | chr5.3:73182611-73182630 | None:intergenic | 35.0% | |
| ATACCAATAACATCCATGTC+AGG | - | chr5.3:73183497-73183516 | None:intergenic | 35.0% | |
| ATCATTAACAGCTTCCATCA+TGG | - | chr5.3:73183807-73183826 | None:intergenic | 35.0% | |
| ATCTACCTTACAGCTTTCTT+CGG | + | chr5.3:73182612-73182631 | MS.gene057100:CDS | 35.0% | |
| CACTAGATTCACTTGTTCAA+CGG | + | chr5.3:73183400-73183419 | MS.gene057100:CDS | 35.0% | |
| CATACTTTATTCTTAACCGG+TGG | + | chr5.3:73182505-73182524 | MS.gene057100:CDS | 35.0% | |
| CTTCTTCTTCATCGTAATGA+AGG | - | chr5.3:73182650-73182669 | None:intergenic | 35.0% | |
| CTTGTTGAATGTATGAGAGA+TGG | - | chr5.3:73183216-73183235 | None:intergenic | 35.0% | |
| TGGAGGGATCAGAATATATT+TGG | - | chr5.3:73182386-73182405 | None:intergenic | 35.0% | |
| TTCATCGTAATGAAGGATGA+AGG | - | chr5.3:73182643-73182662 | None:intergenic | 35.0% | |
| TTCTCATTGTATGACCATGA+TGG | + | chr5.3:73183790-73183809 | MS.gene057100:CDS | 35.0% | |
| TTTCCTGACATGGATGTTAT+TGG | + | chr5.3:73183491-73183510 | MS.gene057100:CDS | 35.0% | |
| ! | AATAGCTTTACAACCTCTGT+TGG | - | chr5.3:73183063-73183082 | None:intergenic | 35.0% |
| ! | AATAGGGTTTGTTCAGATTC+CGG | + | chr5.3:73182953-73182972 | MS.gene057100:CDS | 35.0% |
| ! | ATGATGGAAGCTGTTAATGA+TGG | + | chr5.3:73183806-73183825 | MS.gene057100:CDS | 35.0% |
| !! | TTGTAGCTTTGGATTGACTT+CGG | - | chr5.3:73182703-73182722 | None:intergenic | 35.0% |
| !!! | TTCTTCTTTGTTTTGCTGGA+GGG | - | chr5.3:73182402-73182421 | None:intergenic | 35.0% |
| !!! | TTGGTTCTTCTTTGTTTTGC+TGG | - | chr5.3:73182406-73182425 | None:intergenic | 35.0% |
| AATGTTGCGAGATGCCAATA+GGG | + | chr5.3:73182937-73182956 | MS.gene057100:CDS | 40.0% | |
| AGGATTTCCTGTTGTAGCTT+TGG | - | chr5.3:73182714-73182733 | None:intergenic | 40.0% | |
| AGTCAATCCAAAGCTACAAC+AGG | + | chr5.3:73182704-73182723 | MS.gene057100:CDS | 40.0% | |
| CGAGGCTGTAATTAAAGAAG+AGG | + | chr5.3:73183592-73183611 | MS.gene057100:CDS | 40.0% | |
| CTATTGGCAACTATAGTAGC+TGG | + | chr5.3:73183974-73183993 | MS.gene057100:CDS | 40.0% | |
| CTTGAAGGTTTACCAATGGA+AGG | + | chr5.3:73182888-73182907 | MS.gene057100:CDS | 40.0% | |
| GAAGAAGAAGATGAAGTTGC+TGG | + | chr5.3:73182660-73182679 | MS.gene057100:CDS | 40.0% | |
| GCATAGTGACTGAGATATGA+AGG | - | chr5.3:73183838-73183857 | None:intergenic | 40.0% | |
| GGAATCTGAACAAACCCTAT+TGG | - | chr5.3:73182954-73182973 | None:intergenic | 40.0% | |
| GGCTGTAATTAAAGAAGAGG+TGG | + | chr5.3:73183595-73183614 | MS.gene057100:CDS | 40.0% | |
| GGGATGAACATGGTATCAAA+AGG | + | chr5.3:73183434-73183453 | MS.gene057100:CDS | 40.0% | |
| GTAGATTAGGCAAGCAATGA+GGG | - | chr5.3:73182598-73182617 | None:intergenic | 40.0% | |
| GTCACTTGAAGGTTTACCAA+TGG | + | chr5.3:73182884-73182903 | MS.gene057100:CDS | 40.0% | |
| TAAAGAATACACCGTGCCAA+TGG | + | chr5.3:73183007-73183026 | MS.gene057100:CDS | 40.0% | |
| TCTTTACCATCGAGCAACAA+AGG | - | chr5.3:73182993-73183012 | None:intergenic | 40.0% | |
| TGCAACTAAACAACCTTCAG+TGG | - | chr5.3:73183036-73183055 | None:intergenic | 40.0% | |
| TTAGTTGCAAGTACCAACAG+AGG | + | chr5.3:73183047-73183066 | MS.gene057100:CDS | 40.0% | |
| TTCGATTCAAGCGAGTAAGA+TGG | - | chr5.3:73182801-73182820 | None:intergenic | 40.0% | |
| ! | CAACTGAGAAGCTCTTTTAG+CGG | - | chr5.3:73183159-73183178 | None:intergenic | 40.0% |
| ! | GAACTCTCAACATTTTGAGC+AGG | - | chr5.3:73183773-73183792 | None:intergenic | 40.0% |
| ! | TCTGCTATTTACTTGGCAAC+TGG | + | chr5.3:73183740-73183759 | MS.gene057100:CDS | 40.0% |
| !! | AAATCTTACTGGTTCAGCCA+TGG | + | chr5.3:73183673-73183692 | MS.gene057100:CDS | 40.0% |
| !! | AGTTTTGTCGATGGAAGACA+AGG | + | chr5.3:73182743-73182762 | MS.gene057100:CDS | 40.0% |
| !! | GAAAGTGTTGAAGACTAGTG+TGG | + | chr5.3:73183622-73183641 | MS.gene057100:CDS | 40.0% |
| !! | TCAAACCGATTTTCCTGACA+TGG | + | chr5.3:73183481-73183500 | MS.gene057100:CDS | 40.0% |
| !!! | ACAGTGAATTCTGCTGCTTT+TGG | - | chr5.3:73182425-73182444 | None:intergenic | 40.0% |
| !!! | GTTCTTCTTTGTTTTGCTGG+AGG | - | chr5.3:73182403-73182422 | None:intergenic | 40.0% |
| ACTATGCCTTCCATTGAGGT+GGG | + | chr5.3:73183851-73183870 | MS.gene057100:CDS | 45.0% | |
| AGCGGAGTTGAATCTTACGA+CGG | - | chr5.3:73183141-73183160 | None:intergenic | 45.0% | |
| AGGAGCAAACTCTAGGCTAT+TGG | + | chr5.3:73183958-73183977 | MS.gene057100:CDS | 45.0% | |
| AGTCACTATGCCTTCCATTG+AGG | + | chr5.3:73183847-73183866 | MS.gene057100:CDS | 45.0% | |
| ATGGAAGACAAGGAGGTTGT+TGG | + | chr5.3:73182753-73182772 | MS.gene057100:CDS | 45.0% | |
| CAATGTTGCGAGATGCCAAT+AGG | + | chr5.3:73182936-73182955 | MS.gene057100:CDS | 45.0% | |
| GAGATTGTGAGGACATGAAG+AGG | - | chr5.3:73182555-73182574 | None:intergenic | 45.0% | |
| GGAAACTAGAGCGAGAATCT+CGG | - | chr5.3:73182577-73182596 | None:intergenic | 45.0% | |
| GGAAGCTGTTAATGATGGCA+AGG | + | chr5.3:73183811-73183830 | MS.gene057100:CDS | 45.0% | |
| GGTAGATTAGGCAAGCAATG+AGG | - | chr5.3:73182599-73182618 | None:intergenic | 45.0% | |
| GTGAATTGGATTGAAGGGAG+AGG | + | chr5.3:73183554-73183573 | MS.gene057100:CDS | 45.0% | |
| GTTACTGGAAGGTCACTTGA+AGG | + | chr5.3:73182873-73182892 | MS.gene057100:CDS | 45.0% | |
| TACTCGCTTGAATCGAAGCT+TGG | + | chr5.3:73182804-73182823 | MS.gene057100:CDS | 45.0% | |
| TCATGTCTGCAATTGCAGCT+GGG | + | chr5.3:73184023-73184042 | MS.gene057100:CDS | 45.0% | |
| TGAAGGGAGAGGTAAATCAG+TGG | + | chr5.3:73183565-73183584 | MS.gene057100:CDS | 45.0% | |
| TGATGCAATGGGGATGAACA+TGG | + | chr5.3:73183424-73183443 | MS.gene057100:CDS | 45.0% | |
| TGTGATTAGGAACCAAGCTG+TGG | + | chr5.3:73182845-73182864 | MS.gene057100:CDS | 45.0% | |
| TGTTCAACGGGTGATGCAAT+GGG | + | chr5.3:73183413-73183432 | MS.gene057100:CDS | 45.0% | |
| TTGTTCAACGGGTGATGCAA+TGG | + | chr5.3:73183412-73183431 | MS.gene057100:CDS | 45.0% | |
| TTGTTCGGACAAGAAAGCTG+CGG | + | chr5.3:73183529-73183548 | MS.gene057100:CDS | 45.0% | |
| TTTGTCGATGGAAGACAAGG+AGG | + | chr5.3:73182746-73182765 | MS.gene057100:CDS | 45.0% | |
| ! | AATAGCCTAGAGTTTGCTCC+TGG | - | chr5.3:73183959-73183978 | None:intergenic | 45.0% |
| ! | CATGAAGAGGTGTAGAGGTT+CGG | - | chr5.3:73182542-73182561 | None:intergenic | 45.0% |
| !! | TAGCTTTGGATTGACTTCGG+TGG | - | chr5.3:73182700-73182719 | None:intergenic | 45.0% |
| ACCATCGAGCAACAAAGGAC+CGG | - | chr5.3:73182988-73183007 | None:intergenic | 50.0% | |
| AGACTCCAGGAGCAAACTCT+AGG | + | chr5.3:73183951-73183970 | MS.gene057100:CDS | 50.0% | |
| AGGTAAATCAGTGGTGTGCG+AGG | + | chr5.3:73183574-73183593 | MS.gene057100:CDS | 50.0% | |
| CAACCTTCAGTGGTTGCCAT+TGG | - | chr5.3:73183026-73183045 | None:intergenic | 50.0% | |
| CAACGCCGAAGAAAGCTGTA+AGG | - | chr5.3:73182620-73182639 | None:intergenic | 50.0% | |
| CAAGCTGTGGAGAGAGTTAC+TGG | + | chr5.3:73182858-73182877 | MS.gene057100:CDS | 50.0% | |
| CACTATGCCTTCCATTGAGG+TGG | + | chr5.3:73183850-73183869 | MS.gene057100:CDS | 50.0% | |
| CAGTAACTCTCTCCACAGCT+TGG | - | chr5.3:73182860-73182879 | None:intergenic | 50.0% | |
| CGAGAATCTCGGAGATTGTG+AGG | - | chr5.3:73182566-73182585 | None:intergenic | 50.0% | |
| CGGAGTTGAATCTTACGACG+GGG | - | chr5.3:73183139-73183158 | None:intergenic | 50.0% | |
| CGGCGGTGAATTGGATTGAA+GGG | + | chr5.3:73183549-73183568 | MS.gene057100:CDS | 50.0% | |
| CTCATGTCTGCAATTGCAGC+TGG | + | chr5.3:73184022-73184041 | MS.gene057100:CDS | 50.0% | |
| CTCTGGTCATTCCATCACGA+AGG | - | chr5.3:73183115-73183134 | None:intergenic | 50.0% | |
| CTGTGGAGAGAGTTACTGGA+AGG | + | chr5.3:73182862-73182881 | MS.gene057100:CDS | 50.0% | |
| GAAGACTAGTGTGGCGTCTT+TGG | + | chr5.3:73183631-73183650 | MS.gene057100:CDS | 50.0% | |
| GCGGAGTTGAATCTTACGAC+GGG | - | chr5.3:73183140-73183159 | None:intergenic | 50.0% | |
| GGAGCTAGTAAAGAGACTCC+AGG | + | chr5.3:73183938-73183957 | MS.gene057100:CDS | 50.0% | |
| GGAGTTGAATCTTACGACGG+GGG | - | chr5.3:73183138-73183157 | None:intergenic | 50.0% | |
| GTTCAACGGGTGATGCAATG+GGG | + | chr5.3:73183414-73183433 | MS.gene057100:CDS | 50.0% | |
| TCCATCACGAAGGACAACTG+CGG | - | chr5.3:73183105-73183124 | None:intergenic | 50.0% | |
| TTCAGTGGTTGCCATTGGCA+CGG | - | chr5.3:73183021-73183040 | None:intergenic | 50.0% | |
| ! | AGGGTTTGTTCAGATTCCGG+TGG | + | chr5.3:73182956-73182975 | MS.gene057100:CDS | 50.0% |
| ! | GAGGACATGAAGAGGTGTAG+AGG | - | chr5.3:73182547-73182566 | None:intergenic | 50.0% |
| ! | GGGTTTGTTCAGATTCCGGT+GGG | + | chr5.3:73182957-73182976 | MS.gene057100:CDS | 50.0% |
| ! | TTCGGATCTTTTCACGCCAC+CGG | - | chr5.3:73182524-73182543 | None:intergenic | 50.0% |
| ACTGTGCCCACCTCAATGGA+AGG | - | chr5.3:73183860-73183879 | None:intergenic | 55.0% | |
| AGAAAGCTGCGGCGGTGAAT+TGG | + | chr5.3:73183540-73183559 | MS.gene057100:CDS | 55.0% | |
| ATTGAGGTGGGCACAGTTGG+AGG | + | chr5.3:73183863-73183882 | MS.gene057100:CDS | 55.0% | |
| CAAGGAGGTTGTTGGTGCAG+TGG | + | chr5.3:73182761-73182780 | MS.gene057100:CDS | 55.0% | |
| GCGGCGGTGAATTGGATTGA+AGG | + | chr5.3:73183548-73183567 | MS.gene057100:CDS | 55.0% | |
| GTGCCAATGGCAACCACTGA+AGG | + | chr5.3:73183020-73183039 | MS.gene057100:CDS | 55.0% | |
| GTTGTTGGTGCAGTGGTGTC+TGG | + | chr5.3:73182768-73182787 | MS.gene057100:CDS | 55.0% | |
| TCCAACTGTGCCCACCTCAA+TGG | - | chr5.3:73183864-73183883 | None:intergenic | 55.0% | |
| TCCATTGAGGTGGGCACAGT+TGG | + | chr5.3:73183860-73183879 | MS.gene057100:CDS | 55.0% | |
| TCCGCAGTTGTCCTTCGTGA+TGG | + | chr5.3:73183101-73183120 | MS.gene057100:CDS | 55.0% | |
| TCCTAATCACAGCCGCACGT+CGG | - | chr5.3:73182836-73182855 | None:intergenic | 55.0% | |
| TGAGTGAGAGCTCTCCTGCA+AGG | - | chr5.3:73184006-73184025 | None:intergenic | 55.0% | |
| TTCGGACAAGAAAGCTGCGG+CGG | + | chr5.3:73183532-73183551 | MS.gene057100:CDS | 55.0% | |
| TTGAGGTGGGCACAGTTGGA+GGG | + | chr5.3:73183864-73183883 | MS.gene057100:CDS | 55.0% | |
| ! | GTAGCTGGTTCAGTCCTTGC+AGG | + | chr5.3:73183989-73184008 | MS.gene057100:CDS | 55.0% |
| !! | CTTACTGGTTCAGCCATGGC+TGG | + | chr5.3:73183677-73183696 | MS.gene057100:CDS | 55.0% |
| AAAGGACCGGCAACACCCAC+CGG | - | chr5.3:73182975-73182994 | None:intergenic | 60.0% | |
| GAATCTTACGACGGGGGCTC+TGG | - | chr5.3:73183132-73183151 | None:intergenic | 60.0% | |
| GCCGGTCCTTTGTTGCTCGA+TGG | + | chr5.3:73182984-73183003 | MS.gene057100:CDS | 60.0% | |
| GCTTGGAGATTGCCGACGTG+CGG | + | chr5.3:73182821-73182840 | MS.gene057100:CDS | 60.0% | |
| TCAGCCATGGCTGGTGCTCT+TGG | + | chr5.3:73183686-73183705 | MS.gene057100:CDS | 60.0% | |
| TGAGGTGGGCACAGTTGGAG+GGG | + | chr5.3:73183865-73183884 | MS.gene057100:CDS | 60.0% | |
| ! | CAGATTCCGGTGGGTGTTGC+CGG | + | chr5.3:73182966-73182985 | MS.gene057100:CDS | 60.0% |
| !! | GACAACTGCGGAAGCACCAC+CGG | - | chr5.3:73183093-73183112 | None:intergenic | 60.0% |
| GAGGTGGGCACAGTTGGAGG+GGG | + | chr5.3:73183866-73183885 | MS.gene057100:CDS | 65.0% | |
| GCCATGGCTGGTGCTCTTGG+TGG | + | chr5.3:73183689-73183708 | MS.gene057100:CDS | 65.0% | |
| GCCGACGTGCGGCTGTGATT+AGG | + | chr5.3:73182832-73182851 | MS.gene057100:CDS | 65.0% | |
| !! | GCCACCAAGAGCACCAGCCA+TGG | - | chr5.3:73183693-73183712 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 73182369 | 73184111 | 73182369 | ID=MS.gene057100 |
| chr5.3 | mRNA | 73182369 | 73184111 | 73182369 | ID=MS.gene057100.t1;Parent=MS.gene057100 |
| chr5.3 | exon | 73182369 | 73183234 | 73182369 | ID=MS.gene057100.t1.exon1;Parent=MS.gene057100.t1 |
| chr5.3 | CDS | 73182369 | 73183234 | 73182369 | ID=cds.MS.gene057100.t1;Parent=MS.gene057100.t1 |
| chr5.3 | exon | 73183340 | 73184111 | 73183340 | ID=MS.gene057100.t1.exon2;Parent=MS.gene057100.t1 |
| chr5.3 | CDS | 73183340 | 73184111 | 73183340 | ID=cds.MS.gene057100.t1;Parent=MS.gene057100.t1 |
| Gene Sequence |
| Protein sequence |
