AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48426

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48426.t1 MTR_3g100470 92.384 302 9 5 1 300 1 290 0.0 526
MS.gene48426.t1 MTR_5g066020 60.294 272 83 8 26 295 1 249 5.79e-83 250
MS.gene48426.t1 MTR_1g073860 51.852 189 79 4 76 256 86 270 3.38e-47 161
MS.gene48426.t1 MTR_8g036060 44.358 257 125 5 54 297 56 307 9.49e-47 159
MS.gene48426.t1 MTR_5g011520 53.659 164 72 2 79 242 95 254 1.11e-45 157
MS.gene48426.t1 MTR_1g044155 56.173 162 67 2 76 237 118 275 1.50e-44 155
MS.gene48426.t1 MTR_1g079810 46.734 199 99 3 77 272 64 258 1.80e-42 148
MS.gene48426.t1 MTR_5g091630 48.039 204 81 7 54 241 6 200 9.90e-42 145
MS.gene48426.t1 MTR_3g068035 44.776 201 94 4 94 281 89 285 1.90e-40 143
MS.gene48426.t1 MTR_4g098450 54.902 153 61 3 91 241 83 229 7.82e-38 136
MS.gene48426.t1 MTR_7g080980 53.642 151 62 3 93 241 66 210 7.88e-38 135
MS.gene48426.t1 MTR_1g053685 36.073 219 118 7 51 249 44 260 2.73e-30 115
MS.gene48426.t1 MTR_5g089600 36.667 180 103 4 65 235 58 235 2.98e-30 114
MS.gene48426.t1 MTR_5g080580 46.528 144 73 2 94 237 99 238 2.49e-29 114
MS.gene48426.t1 MTR_1g032910 38.068 176 95 5 71 235 88 260 1.62e-27 108
MS.gene48426.t1 MTR_4g057487 37.912 182 96 6 83 250 16 194 3.43e-26 103
MS.gene48426.t1 MTR_4g057525 38.037 163 91 5 83 237 35 195 3.62e-25 101
MS.gene48426.t1 MTR_5g089700 34.783 161 94 4 83 235 74 231 3.38e-23 95.9
MS.gene48426.t1 MTR_5g010330 36.875 160 96 3 71 227 91 248 4.28e-23 97.4
MS.gene48426.t1 MTR_6g061670 36.913 149 82 3 98 235 105 252 1.86e-21 92.8
MS.gene48426.t1 MTR_6g061670 37.589 141 76 3 106 235 118 257 3.77e-21 92.0
MS.gene48426.t1 MTR_1g061530 34.884 129 84 0 111 239 141 269 4.03e-20 89.7
MS.gene48426.t1 MTR_5g089090 35.669 157 91 3 84 234 28 180 6.45e-19 83.6
MS.gene48426.t1 MTR_1g076710 42.735 117 65 2 111 227 134 248 6.73e-19 85.9
MS.gene48426.t1 MTR_7g077120 38.095 147 87 2 84 227 127 272 2.64e-18 84.3
MS.gene48426.t1 MTR_8g078930 33.083 133 77 3 111 235 1 129 2.23e-17 78.2
MS.gene48426.t1 MTR_4g098460 33.333 144 91 2 84 227 57 195 3.63e-17 80.1
MS.gene48426.t1 MTR_8g031100 37.013 154 93 2 77 227 118 270 3.13e-15 75.5
MS.gene48426.t1 MTR_4g098460 32.215 149 91 3 84 227 57 200 5.61e-15 73.9
MS.gene48426.t1 MTR_1g079780 37.815 119 67 4 115 231 113 226 1.40e-14 73.6
MS.gene48426.t1 MTR_8g098390 32.000 125 83 2 103 227 158 280 1.93e-14 73.2
MS.gene48426.t1 MTR_7g074935 36.957 92 57 1 113 204 129 219 4.23e-14 72.0
MS.gene48426.t1 MTR_4g055833 40.000 120 68 3 111 227 122 240 6.29e-14 71.6
MS.gene48426.t1 MTR_1g038960 35.616 146 88 3 83 227 123 263 6.77e-14 71.6
MS.gene48426.t1 MTR_8g036160 40.000 120 70 2 109 227 140 258 7.85e-14 71.2
MS.gene48426.t1 MTR_4g055803 36.667 120 72 3 111 227 125 243 2.38e-13 70.5
MS.gene48426.t1 MTR_5g011680 32.824 131 84 2 111 238 142 271 2.91e-13 69.3
MS.gene48426.t1 MTR_4g069110 35.043 117 71 3 83 196 33 147 7.31e-13 65.9
MS.gene48426.t1 MTR_4g055813 39.167 120 65 5 111 227 19 133 2.26e-12 66.6
MS.gene48426.t1 MTR_5g013390 30.899 178 109 5 55 227 93 261 6.04e-12 65.9
MS.gene48426.t1 MTR_5g014360 30.488 164 107 3 65 227 146 303 9.51e-12 65.5
MS.gene48426.t1 MTR_4g101990 39.831 118 69 2 111 227 144 260 2.11e-11 63.9
MS.gene48426.t1 MTR_7g116320 35.897 117 71 2 111 227 143 255 2.49e-11 63.9
MS.gene48426.t1 MTR_1g073870 33.548 155 52 5 83 237 51 154 6.49e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48426.t1 AT5G49700 64.502 231 74 5 76 300 48 276 9.23e-98 289
MS.gene48426.t1 AT1G14490 54.911 224 80 6 80 300 1 206 2.80e-69 214
MS.gene48426.t1 AT1G14490 55.556 225 79 7 79 300 19 225 3.52e-69 214
MS.gene48426.t1 AT4G14465 53.631 179 78 3 76 253 59 233 6.24e-48 162
MS.gene48426.t1 AT1G76500 49.390 164 72 2 84 239 72 232 7.42e-47 159
MS.gene48426.t1 AT2G42940 46.000 200 98 4 44 243 19 208 4.36e-44 151
MS.gene48426.t1 AT2G45430 49.444 180 83 3 82 256 87 263 8.63e-44 152
MS.gene48426.t1 AT4G22810 52.147 163 73 2 81 241 102 261 2.79e-43 151
MS.gene48426.t1 AT2G35270 54.321 162 66 3 82 241 76 231 3.68e-43 149
MS.gene48426.t1 AT4G12050 50.311 161 77 1 81 241 115 272 1.32e-42 149
MS.gene48426.t1 AT3G04570 49.704 169 75 2 76 237 72 237 1.28e-40 144
MS.gene48426.t1 AT3G60870 49.664 149 69 2 84 232 59 201 1.69e-40 142
MS.gene48426.t1 AT4G35390 51.634 153 70 2 84 235 63 212 1.82e-37 135
MS.gene48426.t1 AT4G17800 53.642 151 62 3 93 241 91 235 1.20e-35 130
MS.gene48426.t1 AT1G20900 47.727 176 81 2 70 237 72 244 1.44e-33 125
MS.gene48426.t1 AT3G55560 41.441 222 112 7 91 300 95 310 3.45e-29 113
MS.gene48426.t1 AT1G63470 39.189 148 83 4 84 227 147 291 1.79e-25 104
MS.gene48426.t1 AT2G33620 37.888 161 93 3 67 227 125 278 3.01e-23 98.2
MS.gene48426.t1 AT2G33620 37.888 161 93 3 67 227 125 278 3.01e-23 98.2
MS.gene48426.t1 AT2G33620 37.888 161 93 3 67 227 125 278 3.01e-23 98.2
MS.gene48426.t1 AT2G33620 37.888 161 93 3 67 227 125 278 3.01e-23 98.2
MS.gene48426.t1 AT2G45850 36.735 147 89 2 84 227 132 277 1.18e-22 96.7
MS.gene48426.t1 AT2G45850 36.735 147 89 2 84 227 132 277 1.18e-22 96.7
MS.gene48426.t1 AT5G62260 41.667 120 69 1 116 235 165 283 1.69e-22 95.1
MS.gene48426.t1 AT5G62260 44.643 112 61 1 116 227 165 275 6.70e-22 95.1
MS.gene48426.t1 AT5G62260 44.643 112 61 1 116 227 165 275 6.70e-22 95.1
MS.gene48426.t1 AT5G51590 42.735 117 66 1 111 227 178 293 1.59e-21 94.4
MS.gene48426.t1 AT4G17950 37.671 146 88 2 83 227 195 338 2.08e-21 94.0
MS.gene48426.t1 AT2G45850 35.135 148 92 2 84 228 132 278 2.53e-21 91.7
MS.gene48426.t1 AT4G12080 41.880 117 67 1 111 227 170 285 3.20e-21 92.8
MS.gene48426.t1 AT4G25320 41.026 117 68 1 111 227 166 281 2.96e-20 90.5
MS.gene48426.t1 AT3G04590 34.810 158 89 5 111 267 171 315 1.88e-18 85.5
MS.gene48426.t1 AT3G04590 34.899 149 84 4 111 259 171 306 3.62e-18 83.6
MS.gene48426.t1 AT1G63480 31.973 147 95 3 84 227 130 274 2.24e-17 81.6
MS.gene48426.t1 AT1G63480 31.973 147 95 3 84 227 130 274 2.24e-17 81.6
MS.gene48426.t1 AT1G63480 31.973 147 95 3 84 227 124 268 2.55e-17 81.6
MS.gene48426.t1 AT1G63480 31.973 147 95 3 84 227 124 268 2.55e-17 81.6
MS.gene48426.t1 AT1G63480 31.973 147 95 3 84 227 124 268 2.55e-17 81.6
MS.gene48426.t1 AT1G63480 31.973 147 95 3 84 227 124 268 2.55e-17 81.6
MS.gene48426.t1 AT1G63480 31.973 147 95 3 84 227 124 268 2.55e-17 81.6
MS.gene48426.t1 AT5G46640 39.583 144 84 2 84 227 155 295 1.08e-16 80.1
MS.gene48426.t1 AT3G61310 34.014 147 93 2 84 227 134 279 1.77e-15 76.3
MS.gene48426.t1 AT4G22770 40.426 94 55 1 111 204 150 242 2.17e-15 75.9
MS.gene48426.t1 AT4G22770 40.426 94 55 1 111 204 150 242 2.17e-15 75.9
MS.gene48426.t1 AT4G00200 41.026 117 68 1 111 227 123 238 2.96e-13 69.3
MS.gene48426.t1 AT4G00200 41.026 117 68 1 111 227 123 238 2.96e-13 69.3

Find 90 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGACTCATCACAGTTTC+TGG 0.190886 3.1:-79895328 None:intergenic
GGATCCCTTGTTATGATAAT+AGG 0.239719 3.1:-79895307 None:intergenic
CCACAAACTTCTAGAATAAA+AGG 0.260251 3.1:-79895346 None:intergenic
TGCCGTCGTCGGATGTGATT+TGG 0.269955 3.1:+79895857 MS.gene48426:CDS
GGAAACTCGCAGAATGTTTC+CGG 0.298825 3.1:+79895769 MS.gene48426:CDS
GTTATGATAATAGGTGGTTT+TGG 0.312776 3.1:-79895298 None:intergenic
AACTTCTCGATCTCGCTTGC+TGG 0.338896 3.1:+79895586 MS.gene48426:CDS
TTAATAATCCGTCTTATCAT+AGG 0.340032 3.1:+79895689 MS.gene48426:CDS
TGTTTCATTTCCTCCTTTGT+TGG 0.342379 3.1:-79895047 None:intergenic
TTTAGTCGTCGCAAGAATAT+TGG 0.345892 3.1:+79895400 MS.gene48426:CDS
GTCTTATCATAGGTTGCCTT+TGG 0.349330 3.1:+79895699 MS.gene48426:CDS
GTTTCATTTCCTCCTTTGTT+GGG 0.357925 3.1:-79895046 None:intergenic
AAAGTTGAAAAGGGTGAAAT+GGG 0.362532 3.1:-79895120 None:intergenic
GCCGTCGTCGGATGTGATTT+GGG 0.389402 3.1:+79895858 MS.gene48426:CDS
GAAAGTTGAAAAGGGTGAAA+TGG 0.389763 3.1:-79895121 None:intergenic
TGAAAAGTAACGGTGGTTCC+TGG 0.393326 3.1:-79895487 None:intergenic
GCACCGTCTCCGGAGGAGTT+AGG 0.402694 3.1:-79895220 None:intergenic
CTCGATAGTTGCACCGTCTC+CGG 0.411674 3.1:-79895230 None:intergenic
TCATGTTGAGAAAGTTGAAA+AGG 0.411691 3.1:-79895130 None:intergenic
GGTAGATAGTGGACAAGGTC+AGG 0.412812 3.1:+79895795 MS.gene48426:CDS
ATTGTTGGAGGAATTGTTGC+TGG 0.417001 3.1:+79895622 MS.gene48426:CDS
AACTCGGTGTCTGGTGGTGG+TGG 0.433876 3.1:+79895739 MS.gene48426:CDS
GGGAACTCGGTGTCTGGTGG+TGG 0.448397 3.1:+79895736 MS.gene48426:CDS
TCAACAACACGGTGTTTCTC+CGG 0.459031 3.1:+79895552 MS.gene48426:CDS
GAAGGTGGGAACTCGGTGTC+TGG 0.465798 3.1:+79895730 MS.gene48426:CDS
TCGGTGTCTGGTGGTGGTGG+TGG 0.465832 3.1:+79895742 MS.gene48426:CDS
CATGTTGAGAAAGTTGAAAA+GGG 0.470162 3.1:-79895129 None:intergenic
GTTTCCGGTGCGGTAGATAG+TGG 0.484724 3.1:+79895784 MS.gene48426:CDS
TTATCATAGGTTGCCTTTGG+AGG 0.494643 3.1:+79895702 MS.gene48426:CDS
CACCGCCGCTGTTGTTGTTG+TGG 0.503700 3.1:-79895180 None:intergenic
GAGCCAGGTGGACGTCCTCT+CGG 0.506849 3.1:-79895265 None:intergenic
CCACCTTCGTCTTCCTCCAA+AGG 0.508226 3.1:-79895715 None:intergenic
ATCTCGCTTGCTGGACCGCA+AGG 0.512065 3.1:+79895595 MS.gene48426:CDS
GCTGGAAATTTGATAGCTGC+AGG 0.518520 3.1:+79895640 MS.gene48426:CDS
GGACCGCAAGGACAGATTGT+TGG 0.522805 3.1:+79895607 MS.gene48426:CDS
TGGTTATCATCTTCACCGAT+TGG 0.527808 3.1:-79895160 None:intergenic
CACAACAACAACAGCGGCGG+TGG 0.528718 3.1:+79895181 MS.gene48426:CDS
GTGGTTCCTGGTGTAGTTGA+AGG 0.529406 3.1:-79895475 None:intergenic
GAGAAGTTACTCGGAATCGC+CGG 0.531540 3.1:-79895571 None:intergenic
AGCTTTGAGAATAGTAAAGA+AGG 0.533048 3.1:-79895076 None:intergenic
CGGCCGAGAGGACGTCCACC+TGG 0.536597 3.1:+79895262 MS.gene48426:CDS
CAACTGTCATTTGCCGTCGT+CGG 0.541020 3.1:+79895846 MS.gene48426:CDS
CGTCAACCTTCAACTACACC+AGG 0.548835 3.1:+79895469 MS.gene48426:CDS
CAACATGAATGTCAACCAAT+CGG 0.555661 3.1:+79895145 MS.gene48426:CDS
TCCCTTGTTATGATAATAGG+TGG 0.559033 3.1:-79895304 None:intergenic
CCGCAAGGACAGATTGTTGG+AGG 0.574605 3.1:+79895610 MS.gene48426:CDS
AGCGAGATCGAGAAGTTACT+CGG 0.575848 3.1:-79895580 None:intergenic
GGAAGACGAAGGTGGGAACT+CGG 0.577515 3.1:+79895723 MS.gene48426:CDS
TTGTCCACTATCTACCGCAC+CGG 0.578272 3.1:-79895788 None:intergenic
AAACCTAACTCCTCCGGAGA+CGG 0.579246 3.1:+79895217 MS.gene48426:CDS
CTTTGGAGGAAGACGAAGGT+GGG 0.586215 3.1:+79895716 MS.gene48426:CDS
GAGAATAGTAAAGAAGGTGG+TGG 0.587355 3.1:-79895070 None:intergenic
GCTCAGAAACCTAACTCCTC+CGG 0.588543 3.1:+79895211 MS.gene48426:CDS
AACCACCTATTATCATAACA+AGG 0.589057 3.1:+79895302 MS.gene48426:CDS
GGTGGGAACTCGGTGTCTGG+TGG 0.589765 3.1:+79895733 MS.gene48426:CDS
GGAGAAACACCGTGTTGTTG+AGG 0.593344 3.1:-79895550 None:intergenic
TTTGAGAATAGTAAAGAAGG+TGG 0.593545 3.1:-79895073 None:intergenic
TTTATTCTAGAAGTTTGTGG+TGG 0.595031 3.1:+79895349 MS.gene48426:CDS
TGATGATATCAGTAAGGTGG+TGG 0.598283 3.1:-79895898 None:intergenic
GTAGATAGTGGACAAGGTCA+GGG 0.603276 3.1:+79895796 MS.gene48426:CDS
TGTGAATGATGATATCAGTA+AGG 0.612278 3.1:-79895904 None:intergenic
TTATAGAAAGAATATCAAAA+CGG 0.612909 3.1:-79895513 None:intergenic
GGTGGTGGTGGTCTAGCAGA+CGG 0.615762 3.1:-79895883 None:intergenic
AAATTTGATAGCTGCAGGGA+CGG 0.615889 3.1:+79895645 MS.gene48426:CDS
AAAGGCAACCTATGATAAGA+CGG 0.622916 3.1:-79895697 None:intergenic
TCTTCAAATCCCAACAAAGG+AGG 0.632204 3.1:+79895037 MS.gene48426:CDS
CGGAGACGGTGCAACTATCG+AGG 0.635206 3.1:+79895231 MS.gene48426:CDS
CTGGAAATTTGATAGCTGCA+GGG 0.635730 3.1:+79895641 MS.gene48426:CDS
GCCCAAATCACATCCGACGA+CGG 0.636130 3.1:-79895859 None:intergenic
CCTTTGGAGGAAGACGAAGG+TGG 0.637491 3.1:+79895715 MS.gene48426:CDS
TGATATCAGTAAGGTGGTGG+TGG 0.640274 3.1:-79895895 None:intergenic
AAAACGGCCGTGAAAAGTAA+CGG 0.644123 3.1:-79895497 None:intergenic
GTGTTGTTGAGGAACAAAAG+TGG 0.652721 3.1:-79895539 None:intergenic
ACCACCTATTATCATAACAA+GGG 0.655016 3.1:+79895303 MS.gene48426:CDS
GATAGTTGCACCGTCTCCGG+AGG 0.663067 3.1:-79895227 None:intergenic
CCTCCAACAATCTGTCCTTG+CGG 0.667192 3.1:-79895610 None:intergenic
AAGTTGAAAAGGGTGAAATG+GGG 0.668728 3.1:-79895119 None:intergenic
TTGCCTTTGGAGGAAGACGA+AGG 0.669405 3.1:+79895712 MS.gene48426:CDS
AACCACAACAACAACAGCGG+CGG 0.670607 3.1:+79895178 MS.gene48426:CDS
GGTCAGGGTGGTGAGTCGTG+TGG 0.671545 3.1:+79895811 MS.gene48426:CDS
CATTCTTCAAATCCCAACAA+AGG 0.671656 3.1:+79895034 MS.gene48426:CDS
CTCGCAGAATGTTTCCGGTG+CGG 0.683238 3.1:+79895774 MS.gene48426:CDS
GGTGCGGTAGATAGTGGACA+AGG 0.698146 3.1:+79895790 MS.gene48426:CDS
GATAGTGGACAAGGTCAGGG+TGG 0.703391 3.1:+79895799 MS.gene48426:CDS
CAACTATCGAGGTTTCAAGA+CGG 0.720254 3.1:+79895242 MS.gene48426:CDS
GATAACCACAACAACAACAG+CGG 0.730416 3.1:+79895175 MS.gene48426:CDS
GAGGTTTCAAGACGGCCGAG+AGG 0.733357 3.1:+79895250 MS.gene48426:CDS
GAATGATGATATCAGTAAGG+TGG 0.736710 3.1:-79895901 None:intergenic
GGAGGAGTTAGGTTTCTGAG+CGG 0.742946 3.1:-79895209 None:intergenic
ACGGCCGTGAAAAGTAACGG+TGG 0.750019 3.1:-79895494 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAGAAAGAATATCAAAA+CGG - chr3.1:79895516-79895535 None:intergenic 15.0%
! TTAATAATCCGTCTTATCAT+AGG + chr3.1:79895689-79895708 MS.gene48426:CDS 25.0%
!!! ATTGGTTTATGTGTTTTAAC+TGG + chr3.1:79895418-79895437 MS.gene48426:CDS 25.0%
AAAGTTGAAAAGGGTGAAAT+GGG - chr3.1:79895123-79895142 None:intergenic 30.0%
AACCACCTATTATCATAACA+AGG + chr3.1:79895302-79895321 MS.gene48426:CDS 30.0%
ACCACCTATTATCATAACAA+GGG + chr3.1:79895303-79895322 MS.gene48426:CDS 30.0%
CATGTTGAGAAAGTTGAAAA+GGG - chr3.1:79895132-79895151 None:intergenic 30.0%
TCATGTTGAGAAAGTTGAAA+AGG - chr3.1:79895133-79895152 None:intergenic 30.0%
TTTGAGAATAGTAAAGAAGG+TGG - chr3.1:79895076-79895095 None:intergenic 30.0%
! GTTATGATAATAGGTGGTTT+TGG - chr3.1:79895301-79895320 None:intergenic 30.0%
! TTTATTCTAGAAGTTTGTGG+TGG + chr3.1:79895349-79895368 MS.gene48426:CDS 30.0%
!! AGCTTTGAGAATAGTAAAGA+AGG - chr3.1:79895079-79895098 None:intergenic 30.0%
!! CCACAAACTTCTAGAATAAA+AGG - chr3.1:79895349-79895368 None:intergenic 30.0%
!! CCTTTTATTCTAGAAGTTTG+TGG + chr3.1:79895346-79895365 MS.gene48426:CDS 30.0%
!!! TTATGTGTTTTAACTGGTTC+AGG + chr3.1:79895424-79895443 MS.gene48426:CDS 30.0%
AAAGGCAACCTATGATAAGA+CGG - chr3.1:79895700-79895719 None:intergenic 35.0%
AAGTTGAAAAGGGTGAAATG+GGG - chr3.1:79895122-79895141 None:intergenic 35.0%
CAACATGAATGTCAACCAAT+CGG + chr3.1:79895145-79895164 MS.gene48426:CDS 35.0%
CATTCTTCAAATCCCAACAA+AGG + chr3.1:79895034-79895053 MS.gene48426:CDS 35.0%
GAAAGTTGAAAAGGGTGAAA+TGG - chr3.1:79895124-79895143 None:intergenic 35.0%
GTTTCATTTCCTCCTTTGTT+GGG - chr3.1:79895049-79895068 None:intergenic 35.0%
TGTTTCATTTCCTCCTTTGT+TGG - chr3.1:79895050-79895069 None:intergenic 35.0%
TTTAGTCGTCGCAAGAATAT+TGG + chr3.1:79895400-79895419 MS.gene48426:CDS 35.0%
! ACTTTTGTTCCTCAACAACA+CGG + chr3.1:79895541-79895560 MS.gene48426:CDS 35.0%
! GGATCCCTTGTTATGATAAT+AGG - chr3.1:79895310-79895329 None:intergenic 35.0%
! TCCCTTGTTATGATAATAGG+TGG - chr3.1:79895307-79895326 None:intergenic 35.0%
!!! TTTGGTTTGTTTTTTGAGCC+AGG - chr3.1:79895283-79895302 None:intergenic 35.0%
AAAACGGCCGTGAAAAGTAA+CGG - chr3.1:79895500-79895519 None:intergenic 40.0%
AAAGGACTCATCACAGTTTC+TGG - chr3.1:79895331-79895350 None:intergenic 40.0%
ATTGTTGGAGGAATTGTTGC+TGG + chr3.1:79895622-79895641 MS.gene48426:CDS 40.0%
CAACTATCGAGGTTTCAAGA+CGG + chr3.1:79895242-79895261 MS.gene48426:CDS 40.0%
GAGAATAGTAAAGAAGGTGG+TGG - chr3.1:79895073-79895092 None:intergenic 40.0%
GATAACCACAACAACAACAG+CGG + chr3.1:79895175-79895194 MS.gene48426:CDS 40.0%
GTCTTATCATAGGTTGCCTT+TGG + chr3.1:79895699-79895718 MS.gene48426:CDS 40.0%
TCTTCAAATCCCAACAAAGG+AGG + chr3.1:79895037-79895056 MS.gene48426:CDS 40.0%
TGGTTATCATCTTCACCGAT+TGG - chr3.1:79895163-79895182 None:intergenic 40.0%
TTATCATAGGTTGCCTTTGG+AGG + chr3.1:79895702-79895721 MS.gene48426:CDS 40.0%
! AAATTTGATAGCTGCAGGGA+CGG + chr3.1:79895645-79895664 MS.gene48426:CDS 40.0%
! CTGGAAATTTGATAGCTGCA+GGG + chr3.1:79895641-79895660 MS.gene48426:CDS 40.0%
! GTGTTGTTGAGGAACAAAAG+TGG - chr3.1:79895542-79895561 None:intergenic 40.0%
AGCGAGATCGAGAAGTTACT+CGG - chr3.1:79895583-79895602 None:intergenic 45.0%
GGAAACTCGCAGAATGTTTC+CGG + chr3.1:79895769-79895788 MS.gene48426:CDS 45.0%
TCAACAACACGGTGTTTCTC+CGG + chr3.1:79895552-79895571 MS.gene48426:CDS 45.0%
TGAAAAGTAACGGTGGTTCC+TGG - chr3.1:79895490-79895509 None:intergenic 45.0%
! GCTGGAAATTTGATAGCTGC+AGG + chr3.1:79895640-79895659 MS.gene48426:CDS 45.0%
!! GTAGATAGTGGACAAGGTCA+GGG + chr3.1:79895796-79895815 MS.gene48426:CDS 45.0%
!!! GGAACCACCGTTACTTTTCA+CGG + chr3.1:79895490-79895509 MS.gene48426:CDS 45.0%
!!! GGTTTGTTTTTTGAGCCAGG+TGG - chr3.1:79895280-79895299 None:intergenic 45.0%
AAACCTAACTCCTCCGGAGA+CGG + chr3.1:79895217-79895236 MS.gene48426:CDS 50.0%
AACCACAACAACAACAGCGG+CGG + chr3.1:79895178-79895197 MS.gene48426:CDS 50.0%
AACTTCTCGATCTCGCTTGC+TGG + chr3.1:79895586-79895605 MS.gene48426:CDS 50.0%
CCTCCAACAATCTGTCCTTG+CGG - chr3.1:79895613-79895632 None:intergenic 50.0%
CGTCAACCTTCAACTACACC+AGG + chr3.1:79895469-79895488 MS.gene48426:CDS 50.0%
GAGAAGTTACTCGGAATCGC+CGG - chr3.1:79895574-79895593 None:intergenic 50.0%
GCTCAGAAACCTAACTCCTC+CGG + chr3.1:79895211-79895230 MS.gene48426:CDS 50.0%
GGAGGAGTTAGGTTTCTGAG+CGG - chr3.1:79895212-79895231 None:intergenic 50.0%
GTGGTTCCTGGTGTAGTTGA+AGG - chr3.1:79895478-79895497 None:intergenic 50.0%
TTGTCCACTATCTACCGCAC+CGG - chr3.1:79895791-79895810 None:intergenic 50.0%
! CAACTGTCATTTGCCGTCGT+CGG + chr3.1:79895846-79895865 MS.gene48426:CDS 50.0%
! CTTTGGAGGAAGACGAAGGT+GGG + chr3.1:79895716-79895735 MS.gene48426:CDS 50.0%
! GGAGAAACACCGTGTTGTTG+AGG - chr3.1:79895553-79895572 None:intergenic 50.0%
! TTGCCTTTGGAGGAAGACGA+AGG + chr3.1:79895712-79895731 MS.gene48426:CDS 50.0%
!! GGTAGATAGTGGACAAGGTC+AGG + chr3.1:79895795-79895814 MS.gene48426:CDS 50.0%
ACGGCCGTGAAAAGTAACGG+TGG - chr3.1:79895497-79895516 None:intergenic 55.0%
CCACCTTCGTCTTCCTCCAA+AGG - chr3.1:79895718-79895737 None:intergenic 55.0%
CCGCAAGGACAGATTGTTGG+AGG + chr3.1:79895610-79895629 MS.gene48426:CDS 55.0%
CTCGATAGTTGCACCGTCTC+CGG - chr3.1:79895233-79895252 None:intergenic 55.0%
CTCGCAGAATGTTTCCGGTG+CGG + chr3.1:79895774-79895793 MS.gene48426:CDS 55.0%
GCCCAAATCACATCCGACGA+CGG - chr3.1:79895862-79895881 None:intergenic 55.0%
GCCGTCGTCGGATGTGATTT+GGG + chr3.1:79895858-79895877 MS.gene48426:CDS 55.0%
GGAAGACGAAGGTGGGAACT+CGG + chr3.1:79895723-79895742 MS.gene48426:CDS 55.0%
GGACCGCAAGGACAGATTGT+TGG + chr3.1:79895607-79895626 MS.gene48426:CDS 55.0%
GTTTCCGGTGCGGTAGATAG+TGG + chr3.1:79895784-79895803 MS.gene48426:CDS 55.0%
TGCCGTCGTCGGATGTGATT+TGG + chr3.1:79895857-79895876 MS.gene48426:CDS 55.0%
! CCTTTGGAGGAAGACGAAGG+TGG + chr3.1:79895715-79895734 MS.gene48426:CDS 55.0%
!! GATAGTGGACAAGGTCAGGG+TGG + chr3.1:79895799-79895818 MS.gene48426:CDS 55.0%
!! GGTGCGGTAGATAGTGGACA+AGG + chr3.1:79895790-79895809 MS.gene48426:CDS 55.0%
CACAACAACAACAGCGGCGG+TGG + chr3.1:79895181-79895200 MS.gene48426:CDS 60.0%
CGGAGACGGTGCAACTATCG+AGG + chr3.1:79895231-79895250 MS.gene48426:CDS 60.0%
GAGGTTTCAAGACGGCCGAG+AGG + chr3.1:79895250-79895269 MS.gene48426:CDS 60.0%
GATAGTTGCACCGTCTCCGG+AGG - chr3.1:79895230-79895249 None:intergenic 60.0%
! ATCTCGCTTGCTGGACCGCA+AGG + chr3.1:79895595-79895614 MS.gene48426:CDS 60.0%
! CACCGCCGCTGTTGTTGTTG+TGG - chr3.1:79895183-79895202 None:intergenic 60.0%
!! AACTCGGTGTCTGGTGGTGG+TGG + chr3.1:79895739-79895758 MS.gene48426:CDS 60.0%
!! GAAGGTGGGAACTCGGTGTC+TGG + chr3.1:79895730-79895749 MS.gene48426:CDS 60.0%
!! GGTGGTGGTGGTCTAGCAGA+CGG - chr3.1:79895886-79895905 None:intergenic 60.0%
!! TCTGGTGGTGGTGGTGGTGA+TGG + chr3.1:79895748-79895767 MS.gene48426:CDS 60.0%
GAGCCAGGTGGACGTCCTCT+CGG - chr3.1:79895268-79895287 None:intergenic 65.0%
GCACCGTCTCCGGAGGAGTT+AGG - chr3.1:79895223-79895242 None:intergenic 65.0%
GGTCAGGGTGGTGAGTCGTG+TGG + chr3.1:79895811-79895830 MS.gene48426:CDS 65.0%
!! GGGAACTCGGTGTCTGGTGG+TGG + chr3.1:79895736-79895755 MS.gene48426:CDS 65.0%
!! GGTGGGAACTCGGTGTCTGG+TGG + chr3.1:79895733-79895752 MS.gene48426:CDS 65.0%
!! TCGGTGTCTGGTGGTGGTGG+TGG + chr3.1:79895742-79895761 MS.gene48426:CDS 65.0%
CGGCCGAGAGGACGTCCACC+TGG + chr3.1:79895262-79895281 MS.gene48426:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 79895010 79895912 79895010 ID=MS.gene48426
chr3.1 mRNA 79895010 79895912 79895010 ID=MS.gene48426.t1;Parent=MS.gene48426
chr3.1 exon 79895010 79895912 79895010 ID=MS.gene48426.t1.exon1;Parent=MS.gene48426.t1
chr3.1 CDS 79895010 79895912 79895010 ID=cds.MS.gene48426.t1;Parent=MS.gene48426.t1
Gene Sequence

>MS.gene48426

ATGAAAGGAGAATACGTAGAGCAACATTCTTCAAATCCCAACAAAGGAGGAAATGAAACACCACCACCTTCTTTACTATTCTCAAAGCTTCATCAATCACAATCACAATCCCCATTTCACCCTTTTCAACTTTCTCAACATGAATGTCAACCAATCGGTGAAGATGATAACCACAACAACAACAGCGGCGGTGGTGCTACCGCTCAGAAACCTAACTCCTCCGGAGACGGTGCAACTATCGAGGTTTCAAGACGGCCGAGAGGACGTCCACCTGGCTCAAAAAACAAACCAAAACCACCTATTATCATAACAAGGGATCCAGAAACTGTGATGAGTCCTTTTATTCTAGAAGTTTGTGGTGGAAACGATGTTGTTGAAGCTATTTCAGAGTTTAGTCGTCGCAAGAATATTGGTTTATGTGTTTTAACTGGTTCAGGAACTGTTGCTAATGTTACTCTTCGTCAACCTTCAACTACACCAGGAACCACCGTTACTTTTCACGGCCGTTTTGATATTCTTTCTATAACTGCCACTTTTGTTCCTCAACAACACGGTGTTTCTCCGGCGATTCCGAGTAACTTCTCGATCTCGCTTGCTGGACCGCAAGGACAGATTGTTGGAGGAATTGTTGCTGGAAATTTGATAGCTGCAGGGACGGTGTTTGTTATAGCTTCTTCGTTTAATAATCCGTCTTATCATAGGTTGCCTTTGGAGGAAGACGAAGGTGGGAACTCGGTGTCTGGTGGTGGTGGTGGTGATGGAAACTCGCAGAATGTTTCCGGTGCGGTAGATAGTGGACAAGGTCAGGGTGGTGAGTCGTGTGGCATGTCGATGTACAACTGTCATTTGCCGTCGTCGGATGTGATTTGGGCTCCGTCTGCTAGACCACCACCACCTTACTGA
Protein sequence

>MS.gene48426.t1

MKGEYVEQHSSNPNKGGNETPPPSLLFSKLHQSQSQSPFHPFQLSQHECQPIGEDDNHNNNSGGGATAQKPNSSGDGATIEVSRRPRGRPPGSKNKPKPPIIITRDPETVMSPFILEVCGGNDVVEAISEFSRRKNIGLCVLTGSGTVANVTLRQPSTTPGTTVTFHGRFDILSITATFVPQQHGVSPAIPSNFSISLAGPQGQIVGGIVAGNLIAAGTVFVIASSFNNPSYHRLPLEEDEGGNSVSGGGGGDGNSQNVSGAVDSGQGQGGESCGMSMYNCHLPSSDVIWAPSARPPPPY