AlfalfaGEDB | MS.gene052166

M. sativa cultivar XinJiangDaYe / MS.gene052166

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0005488 GO:0043565 GO:0097159 GO:1901363 GO:1990837
PFAM: PF03479.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052166.t1	XP_003602928.1	85.8	303	28	5	1	301	1	290	1.50E-133	485.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052166.t1	Q9LTA2	64.3	230	75	5	78	301	48	276	9.5e-76	285.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052166.t1	G7J554	85.8	303	28	5	1	301	1	290	1.1e-133	485.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052166	MS.gene058127	0.805934	1.05E-49	-1.69E-46
MS.gene052166	MS.gene05996	-0.802404	5.70E-49	-1.69E-46
MS.gene052166	MS.gene060339	-0.801047	1.08E-48	-1.69E-46
MS.gene052166	MS.gene061226	0.805876	1.08E-49	-1.69E-46
MS.gene052166	MS.gene068792	0.811422	7.06E-51	-1.69E-46
MS.gene052166	MS.gene069368	0.810854	9.37E-51	-1.69E-46
MS.gene052166	MS.gene069369	0.812145	4.91E-51	-1.69E-46
MS.gene052166	MS.gene21887	0.807054	6.10E-50	-1.69E-46
MS.gene052166	MS.gene26812	0.814123	1.81E-51	-1.69E-46
MS.gene052166	MS.gene28120	0.800204	1.61E-48	-1.69E-46
MS.gene052166	MS.gene48426	0.893977	3.80E-75	-1.69E-46
MS.gene052166	MS.gene57424	0.837438	5.20E-57	-1.69E-46
MS.gene052166	MS.gene58021	-0.819476	1.14E-52	-1.69E-46
MS.gene052166	MS.gene70343	0.838899	2.19E-57	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052166.t1	MTR_3g100470	92.079	303	9	5	1	301	1	290	0.0	526
MS.gene052166.t1	MTR_5g066020	61.278	266	75	8	41	296	2	249	2.55e-82	249
MS.gene052166.t1	MTR_1g073860	51.892	185	80	3	78	257	86	266	5.38e-47	160
MS.gene052166.t1	MTR_8g036060	50.500	200	95	2	56	255	56	251	7.02e-47	160
MS.gene052166.t1	MTR_5g011520	53.659	164	72	2	81	244	95	254	9.91e-46	157
MS.gene052166.t1	MTR_1g044155	56.173	162	67	2	78	239	118	275	1.48e-44	155
MS.gene052166.t1	MTR_1g079810	49.451	182	85	3	79	257	64	241	8.44e-43	149
MS.gene052166.t1	MTR_5g091630	48.039	204	81	7	56	243	6	200	9.24e-42	145
MS.gene052166.t1	MTR_3g068035	44.279	201	94	4	96	282	89	285	2.09e-39	140
MS.gene052166.t1	MTR_4g098450	54.902	153	61	3	93	243	83	229	6.71e-38	136
MS.gene052166.t1	MTR_7g080980	53.642	151	62	3	95	243	66	210	7.67e-38	135
MS.gene052166.t1	MTR_1g053685	36.073	219	118	7	53	251	44	260	2.80e-30	115
MS.gene052166.t1	MTR_5g089600	36.667	180	103	4	67	237	58	235	3.11e-30	114
MS.gene052166.t1	MTR_5g080580	46.528	144	73	2	96	239	99	238	2.63e-29	114
MS.gene052166.t1	MTR_1g032910	38.068	176	95	5	73	237	88	260	1.71e-27	108
MS.gene052166.t1	MTR_4g057487	37.912	182	96	6	85	252	16	194	3.50e-26	103
MS.gene052166.t1	MTR_4g057525	38.037	163	91	5	85	239	35	195	3.89e-25	101
MS.gene052166.t1	MTR_5g089700	34.783	161	94	4	85	237	74	231	3.67e-23	95.5
MS.gene052166.t1	MTR_5g010330	36.875	160	96	3	73	229	91	248	5.18e-23	97.1
MS.gene052166.t1	MTR_6g061670	36.913	149	82	3	100	237	105	252	1.91e-21	92.8
MS.gene052166.t1	MTR_6g061670	37.589	141	76	3	108	237	118	257	3.31e-21	92.0
MS.gene052166.t1	MTR_1g061530	34.884	129	84	0	113	241	141	269	4.53e-20	89.4
MS.gene052166.t1	MTR_5g089090	35.669	157	91	3	86	236	28	180	5.51e-19	83.6
MS.gene052166.t1	MTR_1g076710	42.735	117	65	2	113	229	134	248	6.39e-19	85.9
MS.gene052166.t1	MTR_7g077120	38.095	147	87	2	86	229	127	272	3.14e-18	84.0
MS.gene052166.t1	MTR_8g078930	33.083	133	77	3	113	237	1	129	2.56e-17	77.8
MS.gene052166.t1	MTR_4g098460	33.333	144	91	2	86	229	57	195	3.30e-17	80.5
MS.gene052166.t1	MTR_8g031100	37.013	154	93	2	79	229	118	270	3.20e-15	75.5
MS.gene052166.t1	MTR_4g098460	32.215	149	91	3	86	229	57	200	6.44e-15	73.9
MS.gene052166.t1	MTR_1g079780	37.815	119	67	4	117	233	113	226	1.48e-14	73.2
MS.gene052166.t1	MTR_8g098390	32.000	125	83	2	105	229	158	280	2.11e-14	73.2
MS.gene052166.t1	MTR_7g074935	36.957	92	57	1	115	206	129	219	4.36e-14	72.0
MS.gene052166.t1	MTR_4g055833	40.000	120	68	3	113	229	122	240	6.68e-14	71.6
MS.gene052166.t1	MTR_1g038960	35.616	146	88	3	85	229	123	263	7.39e-14	71.2
MS.gene052166.t1	MTR_8g036160	40.000	120	70	2	111	229	140	258	7.80e-14	71.6
MS.gene052166.t1	MTR_4g055803	36.667	120	72	3	113	229	125	243	2.35e-13	70.5
MS.gene052166.t1	MTR_5g011680	32.824	131	84	2	113	240	142	271	3.03e-13	69.3
MS.gene052166.t1	MTR_4g069110	35.043	117	71	3	85	198	33	147	7.60e-13	65.9
MS.gene052166.t1	MTR_4g055813	39.167	120	65	5	113	229	19	133	2.32e-12	66.6
MS.gene052166.t1	MTR_5g013390	30.899	178	109	5	57	229	93	261	5.56e-12	65.9
MS.gene052166.t1	MTR_5g014360	30.488	164	107	3	67	229	146	303	1.07e-11	65.1
MS.gene052166.t1	MTR_4g101990	39.831	118	69	2	113	229	144	260	2.34e-11	63.9
MS.gene052166.t1	MTR_7g116320	35.897	117	71	2	113	229	143	255	2.54e-11	63.9
MS.gene052166.t1	MTR_1g073870	33.548	155	52	5	85	239	51	154	5.66e-11	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052166.t1	AT5G49700	64.783	230	74	5	78	301	48	276	7.20e-98	289
MS.gene052166.t1	AT1G14490	55.605	223	79	6	82	301	1	206	3.55e-70	216
MS.gene052166.t1	AT1G14490	56.250	224	78	7	81	301	19	225	3.72e-70	217
MS.gene052166.t1	AT4G14465	53.073	179	78	3	78	254	59	233	1.30e-47	161
MS.gene052166.t1	AT1G76500	49.390	164	72	2	86	241	72	232	6.30e-47	160
MS.gene052166.t1	AT2G42940	46.000	200	98	4	46	245	19	208	4.25e-44	151
MS.gene052166.t1	AT2G45430	49.444	180	82	3	84	257	87	263	1.05e-43	152
MS.gene052166.t1	AT4G22810	52.147	163	73	2	83	243	102	261	2.84e-43	151
MS.gene052166.t1	AT2G35270	54.321	162	66	3	84	243	76	231	4.07e-43	149
MS.gene052166.t1	AT4G12050	50.311	161	77	1	83	243	115	272	1.30e-42	149
MS.gene052166.t1	AT3G60870	49.664	149	69	2	86	234	59	201	1.37e-40	142
MS.gene052166.t1	AT3G04570	49.704	169	75	2	78	239	72	237	1.39e-40	144
MS.gene052166.t1	AT4G35390	51.634	153	70	2	86	237	63	212	1.91e-37	135
MS.gene052166.t1	AT4G17800	53.642	151	62	3	95	243	91	235	1.38e-35	130
MS.gene052166.t1	AT1G20900	47.727	176	81	2	72	239	72	244	1.44e-33	125
MS.gene052166.t1	AT3G55560	40.639	219	117	4	93	301	95	310	8.12e-30	115
MS.gene052166.t1	AT1G63470	39.189	148	83	4	86	229	147	291	1.75e-25	104
MS.gene052166.t1	AT2G33620	37.888	161	93	3	69	229	125	278	3.16e-23	98.2
MS.gene052166.t1	AT2G33620	37.888	161	93	3	69	229	125	278	3.16e-23	98.2
MS.gene052166.t1	AT2G33620	37.888	161	93	3	69	229	125	278	3.16e-23	98.2
MS.gene052166.t1	AT2G33620	37.888	161	93	3	69	229	125	278	3.16e-23	98.2
MS.gene052166.t1	AT2G45850	36.735	147	89	2	86	229	132	277	1.30e-22	96.3
MS.gene052166.t1	AT2G45850	36.735	147	89	2	86	229	132	277	1.30e-22	96.3
MS.gene052166.t1	AT5G62260	41.667	120	69	1	118	237	165	283	1.62e-22	95.1
MS.gene052166.t1	AT5G62260	44.643	112	61	1	118	229	165	275	6.63e-22	95.1
MS.gene052166.t1	AT5G62260	44.643	112	61	1	118	229	165	275	6.63e-22	95.1
MS.gene052166.t1	AT5G51590	42.735	117	66	1	113	229	178	293	1.59e-21	94.4
MS.gene052166.t1	AT4G17950	37.671	146	88	2	85	229	195	338	2.02e-21	94.0
MS.gene052166.t1	AT2G45850	35.135	148	92	2	86	230	132	278	2.79e-21	91.7
MS.gene052166.t1	AT4G12080	41.880	117	67	1	113	229	170	285	3.63e-21	92.4
MS.gene052166.t1	AT4G25320	41.026	117	68	1	113	229	166	281	2.61e-20	90.5
MS.gene052166.t1	AT3G04590	34.177	158	89	5	113	268	171	315	1.52e-18	85.5
MS.gene052166.t1	AT3G04590	34.722	144	81	4	113	256	171	301	2.99e-18	83.6
MS.gene052166.t1	AT1G63480	31.973	147	95	3	86	229	130	274	2.15e-17	82.0
MS.gene052166.t1	AT1G63480	31.973	147	95	3	86	229	130	274	2.15e-17	82.0
MS.gene052166.t1	AT1G63480	31.973	147	95	3	86	229	124	268	2.54e-17	81.6
MS.gene052166.t1	AT1G63480	31.973	147	95	3	86	229	124	268	2.54e-17	81.6
MS.gene052166.t1	AT1G63480	31.973	147	95	3	86	229	124	268	2.54e-17	81.6
MS.gene052166.t1	AT1G63480	31.973	147	95	3	86	229	124	268	2.54e-17	81.6
MS.gene052166.t1	AT1G63480	31.973	147	95	3	86	229	124	268	2.54e-17	81.6
MS.gene052166.t1	AT5G46640	39.583	144	84	2	86	229	155	295	1.20e-16	80.1
MS.gene052166.t1	AT3G61310	34.014	147	93	2	86	229	134	279	1.72e-15	76.3
MS.gene052166.t1	AT4G22770	40.426	94	55	1	113	206	150	242	2.24e-15	75.9
MS.gene052166.t1	AT4G22770	40.426	94	55	1	113	206	150	242	2.24e-15	75.9
MS.gene052166.t1	AT4G00200	41.026	117	68	1	113	229	123	238	2.97e-13	69.3
MS.gene052166.t1	AT4G00200	41.026	117	68	1	113	229	123	238	2.97e-13	69.3

Find 92 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGACTCATCACAGTTTC+TGG	0.190886	3.2:-83713315	None:intergenic
GGATCCCTTGTTATGATAAT+AGG	0.239719	3.2:-83713294	None:intergenic
CCACAAACTTCTAGAATAAA+AGG	0.260251	3.2:-83713333	None:intergenic
GGAAACTCGCAGAATGTTTC+CGG	0.298825	3.2:+83713753	MS.gene052166:CDS
TTAATAATCCGTCGTATCAT+AGG	0.298896	3.2:+83713676	MS.gene052166:CDS
TGCCGTCGTCTGATGTGATT+TGG	0.299149	3.2:+83713841	MS.gene052166:CDS
GTTATGATAATAGGTGGTTT+TGG	0.312776	3.2:-83713285	None:intergenic
AACTTCTCGATCTCGCTTGC+TGG	0.338896	3.2:+83713573	MS.gene052166:CDS
TGTTTCATTTCCTCCTTTGT+TGG	0.342379	3.2:-83713028	None:intergenic
TTTAGTCGTCGCAAGAATAT+TGG	0.345892	3.2:+83713387	MS.gene052166:CDS
GTTTCATTTCCTCCTTTGTT+GGG	0.357925	3.2:-83713027	None:intergenic
GCACCGTCGCCGGAGGAGTT+AGG	0.388272	3.2:-83713207	None:intergenic
TGAAAAGTAACGGTGGTTCC+TGG	0.393326	3.2:-83713474	None:intergenic
AACTCGGTGTCTGGCGGTGG+TGG	0.406817	3.2:+83713726	MS.gene052166:CDS
ATTGTTGGAGGAATTGTTGC+TGG	0.417001	3.2:+83713609	MS.gene052166:CDS
AAAGTTGAAAAGGGTGAAAT+GGG	0.433697	3.2:-83713107	None:intergenic
GCCGTCGTCTGATGTGATTT+GGG	0.434578	3.2:+83713842	MS.gene052166:CDS
GTTTCCGGTGCGGTGGATAG+TGG	0.435318	3.2:+83713768	MS.gene052166:CDS
GAAAGTTGAAAAGGGTGAAA+TGG	0.439544	3.2:-83713108	None:intergenic
GAAGGTGGAAACTCGGTGTC+TGG	0.443333	3.2:+83713717	MS.gene052166:CDS
TCATGTTGTGAAAGTTGAAA+AGG	0.449205	3.2:-83713117	None:intergenic
GAAAATTGATTTGTAATGAA+AGG	0.450736	3.2:+83712976	None:intergenic
GGAAACTCGGTGTCTGGCGG+TGG	0.453301	3.2:+83713723	MS.gene052166:CDS
GTGTCTGGCGGTGGTGGTGA+TGG	0.453913	3.2:+83713732	MS.gene052166:CDS
GTATCATAGGCTTCCGTTGG+AGG	0.456186	3.2:+83713689	MS.gene052166:CDS
TCAACAACACGGTGTTTCTC+CGG	0.459031	3.2:+83713539	MS.gene052166:CDS
CTCGATAGTTGCACCGTCGC+CGG	0.486648	3.2:-83713217	None:intergenic
GATAGTGGACAAGGTGGTGG+TGG	0.487211	3.2:+83713783	MS.gene052166:CDS
GTGGATAGTGGACAAGGTGG+TGG	0.489300	3.2:+83713780	MS.gene052166:CDS
CACCGCCGCTGTTGTTGTTG+TGG	0.503700	3.2:-83713167	None:intergenic
GAGCCAGGTGGACGTCCTCT+CGG	0.506849	3.2:-83713252	None:intergenic
CATGTTGTGAAAGTTGAAAA+GGG	0.512252	3.2:-83713116	None:intergenic
GCTGGAAATTTGATAGCTGC+AGG	0.518520	3.2:+83713627	MS.gene052166:CDS
CCACCTTCATCTTCCTCCAA+CGG	0.522174	3.2:-83713702	None:intergenic
TGGTTATCATCTTCACCGAT+TGG	0.527808	3.2:-83713147	None:intergenic
CACAACAACAACAGCGGCGG+TGG	0.528718	3.2:+83713168	MS.gene052166:CDS
GTGGTTCCTGGTGTAGTTGA+AGG	0.529406	3.2:-83713462	None:intergenic
GAGAAGTTACTCGGAATCGC+CGG	0.531540	3.2:-83713558	None:intergenic
AGCTTTGAGAATAGTAAAGA+AGG	0.533048	3.2:-83713057	None:intergenic
GGACCACAAGGACAGATTGT+TGG	0.535223	3.2:+83713594	MS.gene052166:CDS
GTCGTATCATAGGCTTCCGT+TGG	0.536000	3.2:+83713686	MS.gene052166:CDS
CGGCCGAGAGGACGTCCACC+TGG	0.536597	3.2:+83713249	MS.gene052166:CDS
ATCTCGCTTGCTGGACCACA+AGG	0.546742	3.2:+83713582	MS.gene052166:CDS
CGTCAACCTTCAACTACACC+AGG	0.548835	3.2:+83713456	MS.gene052166:CDS
CAACATGAATGTCAACCAAT+CGG	0.550572	3.2:+83713132	MS.gene052166:CDS
CTTCCGTTGGAGGAAGATGA+AGG	0.556150	3.2:+83713699	MS.gene052166:CDS
TCCCTTGTTATGATAATAGG+TGG	0.559033	3.2:-83713291	None:intergenic
GGAGTTAGGTTTCTGAGCGG+TGG	0.570330	3.2:-83713193	None:intergenic
AGCGAGATCGAGAAGTTACT+CGG	0.575848	3.2:-83713567	None:intergenic
AAACCTAACTCCTCCGGCGA+CGG	0.577152	3.2:+83713204	MS.gene052166:CDS
GGAAGATGAAGGTGGAAACT+CGG	0.580324	3.2:+83713710	MS.gene052166:CDS
CCACAAGGACAGATTGTTGG+AGG	0.587023	3.2:+83713597	MS.gene052166:CDS
GAGAATAGTAAAGAAGGTGG+TGG	0.587355	3.2:-83713051	None:intergenic
AACCACCTATTATCATAACA+AGG	0.589057	3.2:+83713289	MS.gene052166:CDS
GCAGAATGTTTCCGGTGCGG+TGG	0.590009	3.2:+83713761	MS.gene052166:CDS
GGAGAAACACCGTGTTGTTG+AGG	0.593344	3.2:-83713537	None:intergenic
TTTGAGAATAGTAAAGAAGG+TGG	0.593545	3.2:-83713054	None:intergenic
TTTATTCTAGAAGTTTGTGG+TGG	0.595031	3.2:+83713336	MS.gene052166:CDS
TGTGAATGATGATATCAGTA+AGG	0.595587	3.2:-83713888	None:intergenic
TGATGATATCAGTAAGGTGG+TGG	0.598283	3.2:-83713882	None:intergenic
CGGCGACGGTGCAACTATCG+AGG	0.613699	3.2:+83713218	MS.gene052166:CDS
GGTGGTGGTGGTCTAGCAGA+CGG	0.615762	3.2:-83713867	None:intergenic
AAATTTGATAGCTGCAGGGA+CGG	0.615889	3.2:+83713632	MS.gene052166:CDS
GATAGTTGCACCGTCGCCGG+AGG	0.619215	3.2:-83713214	None:intergenic
TTGTCCACTATCCACCGCAC+CGG	0.619515	3.2:-83713772	None:intergenic
GGTGGTGGTGGCGAGTCGTG+TGG	0.623703	3.2:+83713795	MS.gene052166:CDS
CCTCCAACAATCTGTCCTTG+TGG	0.630169	3.2:-83713597	None:intergenic
TCTTCAAATCCCAACAAAGG+AGG	0.632204	3.2:+83713018	MS.gene052166:CDS
CTGGAAATTTGATAGCTGCA+GGG	0.635730	3.2:+83713628	MS.gene052166:CDS
GCTCAGAAACCTAACTCCTC+CGG	0.637134	3.2:+83713198	MS.gene052166:CDS
TGATATCAGTAAGGTGGTGG+TGG	0.640274	3.2:-83713879	None:intergenic
GGTGCGGTGGATAGTGGACA+AGG	0.641333	3.2:+83713774	MS.gene052166:CDS
GTGTTGTTGAGGAACAAAAG+TGG	0.643128	3.2:-83713526	None:intergenic
TTATAGAAAGAATATCAAAA+CGG	0.643632	3.2:-83713500	None:intergenic
AAAACGGCCGTGAAAAGTAA+CGG	0.644123	3.2:-83713484	None:intergenic
GGTGGAAACTCGGTGTCTGG+CGG	0.649590	3.2:+83713720	MS.gene052166:CDS
ACCACCTATTATCATAACAA+GGG	0.655016	3.2:+83713290	MS.gene052166:CDS
AACCACAACAACAACAGCGG+CGG	0.670607	3.2:+83713165	MS.gene052166:CDS
CATTCTTCAAATCCCAACAA+AGG	0.671656	3.2:+83713015	MS.gene052166:CDS
CTCGCAGAATGTTTCCGGTG+CGG	0.677861	3.2:+83713758	MS.gene052166:CDS
AACGGAAGCCTATGATACGA+CGG	0.681608	3.2:-83713684	None:intergenic
AAGTTGAAAAGGGTGAAATG+GGG	0.684741	3.2:-83713106	None:intergenic
GCGGTGGATAGTGGACAAGG+TGG	0.689319	3.2:+83713777	MS.gene052166:CDS
GAATGATGATATCAGTAAGG+TGG	0.697309	3.2:-83713885	None:intergenic
GCCCAAATCACATCAGACGA+CGG	0.700997	3.2:-83713843	None:intergenic
TTGTTGAGGAACAAAAGTGG+CGG	0.701935	3.2:-83713523	None:intergenic
CAACTATCGAGGTTTCAAGA+CGG	0.720254	3.2:+83713229	MS.gene052166:CDS
GATAACCACAACAACAACAG+CGG	0.730416	3.2:+83713162	MS.gene052166:CDS
GAGGTTTCAAGACGGCCGAG+AGG	0.733357	3.2:+83713237	MS.gene052166:CDS
CCGTTGGAGGAAGATGAAGG+TGG	0.735117	3.2:+83713702	MS.gene052166:CDS
ACGGCCGTGAAAAGTAACGG+TGG	0.750019	3.2:-83713481	None:intergenic
GGAGGAGTTAGGTTTCTGAG+CGG	0.768047	3.2:-83713196	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTATAGAAAGAATATCAAAA+CGG	-	chr3.2:83713503-83713522	None:intergenic	15.0%
!!!	ATTGGTTTATGTGTTTTAAC+TGG	+	chr3.2:83713405-83713424	MS.gene052166:CDS	25.0%
	AAAGTTGAAAAGGGTGAAAT+GGG	-	chr3.2:83713110-83713129	None:intergenic	30.0%
	AACCACCTATTATCATAACA+AGG	+	chr3.2:83713289-83713308	MS.gene052166:CDS	30.0%
	ACCACCTATTATCATAACAA+GGG	+	chr3.2:83713290-83713309	MS.gene052166:CDS	30.0%
	CATGTTGTGAAAGTTGAAAA+GGG	-	chr3.2:83713119-83713138	None:intergenic	30.0%
	TCATGTTGTGAAAGTTGAAA+AGG	-	chr3.2:83713120-83713139	None:intergenic	30.0%
	TTAATAATCCGTCGTATCAT+AGG	+	chr3.2:83713676-83713695	MS.gene052166:CDS	30.0%
	TTTGAGAATAGTAAAGAAGG+TGG	-	chr3.2:83713057-83713076	None:intergenic	30.0%
!	GTTATGATAATAGGTGGTTT+TGG	-	chr3.2:83713288-83713307	None:intergenic	30.0%
!	TTTATTCTAGAAGTTTGTGG+TGG	+	chr3.2:83713336-83713355	MS.gene052166:CDS	30.0%
!!	AGCTTTGAGAATAGTAAAGA+AGG	-	chr3.2:83713060-83713079	None:intergenic	30.0%
!!	CCACAAACTTCTAGAATAAA+AGG	-	chr3.2:83713336-83713355	None:intergenic	30.0%
!!	CCTTTTATTCTAGAAGTTTG+TGG	+	chr3.2:83713333-83713352	MS.gene052166:CDS	30.0%
!!!	TTATGTGTTTTAACTGGTTC+AGG	+	chr3.2:83713411-83713430	MS.gene052166:CDS	30.0%
	AAGTTGAAAAGGGTGAAATG+GGG	-	chr3.2:83713109-83713128	None:intergenic	35.0%
	CAACATGAATGTCAACCAAT+CGG	+	chr3.2:83713132-83713151	MS.gene052166:CDS	35.0%
	CATTCTTCAAATCCCAACAA+AGG	+	chr3.2:83713015-83713034	MS.gene052166:CDS	35.0%
	GAAAGTTGAAAAGGGTGAAA+TGG	-	chr3.2:83713111-83713130	None:intergenic	35.0%
	GTTTCATTTCCTCCTTTGTT+GGG	-	chr3.2:83713030-83713049	None:intergenic	35.0%
	TGTTTCATTTCCTCCTTTGT+TGG	-	chr3.2:83713031-83713050	None:intergenic	35.0%
	TTTAGTCGTCGCAAGAATAT+TGG	+	chr3.2:83713387-83713406	MS.gene052166:CDS	35.0%
!	ACTTTTGTTCCTCAACAACA+CGG	+	chr3.2:83713528-83713547	MS.gene052166:CDS	35.0%
!	GGATCCCTTGTTATGATAAT+AGG	-	chr3.2:83713297-83713316	None:intergenic	35.0%
!	TCCCTTGTTATGATAATAGG+TGG	-	chr3.2:83713294-83713313	None:intergenic	35.0%
!!!	TTTGGTTTGTTTTTTGAGCC+AGG	-	chr3.2:83713270-83713289	None:intergenic	35.0%
	AAAACGGCCGTGAAAAGTAA+CGG	-	chr3.2:83713487-83713506	None:intergenic	40.0%
	AAAGGACTCATCACAGTTTC+TGG	-	chr3.2:83713318-83713337	None:intergenic	40.0%
	ATTGTTGGAGGAATTGTTGC+TGG	+	chr3.2:83713609-83713628	MS.gene052166:CDS	40.0%
	CAACTATCGAGGTTTCAAGA+CGG	+	chr3.2:83713229-83713248	MS.gene052166:CDS	40.0%
	GAGAATAGTAAAGAAGGTGG+TGG	-	chr3.2:83713054-83713073	None:intergenic	40.0%
	GATAACCACAACAACAACAG+CGG	+	chr3.2:83713162-83713181	MS.gene052166:CDS	40.0%
	TCTTCAAATCCCAACAAAGG+AGG	+	chr3.2:83713018-83713037	MS.gene052166:CDS	40.0%
	TGGTTATCATCTTCACCGAT+TGG	-	chr3.2:83713150-83713169	None:intergenic	40.0%
	TTGTTGAGGAACAAAAGTGG+CGG	-	chr3.2:83713526-83713545	None:intergenic	40.0%
!	AAATTTGATAGCTGCAGGGA+CGG	+	chr3.2:83713632-83713651	MS.gene052166:CDS	40.0%
!	CTGGAAATTTGATAGCTGCA+GGG	+	chr3.2:83713628-83713647	MS.gene052166:CDS	40.0%
!	GTGTTGTTGAGGAACAAAAG+TGG	-	chr3.2:83713529-83713548	None:intergenic	40.0%
	AACGGAAGCCTATGATACGA+CGG	-	chr3.2:83713687-83713706	None:intergenic	45.0%
	AGCGAGATCGAGAAGTTACT+CGG	-	chr3.2:83713570-83713589	None:intergenic	45.0%
	GGAAACTCGCAGAATGTTTC+CGG	+	chr3.2:83713753-83713772	MS.gene052166:CDS	45.0%
	GGAAGATGAAGGTGGAAACT+CGG	+	chr3.2:83713710-83713729	MS.gene052166:CDS	45.0%
	TCAACAACACGGTGTTTCTC+CGG	+	chr3.2:83713539-83713558	MS.gene052166:CDS	45.0%
	TGAAAAGTAACGGTGGTTCC+TGG	-	chr3.2:83713477-83713496	None:intergenic	45.0%
!	GCTGGAAATTTGATAGCTGC+AGG	+	chr3.2:83713627-83713646	MS.gene052166:CDS	45.0%
!!!	GGAACCACCGTTACTTTTCA+CGG	+	chr3.2:83713477-83713496	MS.gene052166:CDS	45.0%
!!!	GGTTTGTTTTTTGAGCCAGG+TGG	-	chr3.2:83713267-83713286	None:intergenic	45.0%
	AACCACAACAACAACAGCGG+CGG	+	chr3.2:83713165-83713184	MS.gene052166:CDS	50.0%
	AACTTCTCGATCTCGCTTGC+TGG	+	chr3.2:83713573-83713592	MS.gene052166:CDS	50.0%
	CCACAAGGACAGATTGTTGG+AGG	+	chr3.2:83713597-83713616	MS.gene052166:CDS	50.0%
	CCACCTTCATCTTCCTCCAA+CGG	-	chr3.2:83713705-83713724	None:intergenic	50.0%
	CCTCCAACAATCTGTCCTTG+TGG	-	chr3.2:83713600-83713619	None:intergenic	50.0%
	CGTCAACCTTCAACTACACC+AGG	+	chr3.2:83713456-83713475	MS.gene052166:CDS	50.0%
	CTTCCGTTGGAGGAAGATGA+AGG	+	chr3.2:83713699-83713718	MS.gene052166:CDS	50.0%
	GAGAAGTTACTCGGAATCGC+CGG	-	chr3.2:83713561-83713580	None:intergenic	50.0%
	GCCCAAATCACATCAGACGA+CGG	-	chr3.2:83713846-83713865	None:intergenic	50.0%
	GCCGTCGTCTGATGTGATTT+GGG	+	chr3.2:83713842-83713861	MS.gene052166:CDS	50.0%
	GCTCAGAAACCTAACTCCTC+CGG	+	chr3.2:83713198-83713217	MS.gene052166:CDS	50.0%
	GGACCACAAGGACAGATTGT+TGG	+	chr3.2:83713594-83713613	MS.gene052166:CDS	50.0%
	GGAGGAGTTAGGTTTCTGAG+CGG	-	chr3.2:83713199-83713218	None:intergenic	50.0%
	GTATCATAGGCTTCCGTTGG+AGG	+	chr3.2:83713689-83713708	MS.gene052166:CDS	50.0%
	GTCGTATCATAGGCTTCCGT+TGG	+	chr3.2:83713686-83713705	MS.gene052166:CDS	50.0%
	GTGGTTCCTGGTGTAGTTGA+AGG	-	chr3.2:83713465-83713484	None:intergenic	50.0%
	TGCCGTCGTCTGATGTGATT+TGG	+	chr3.2:83713841-83713860	MS.gene052166:CDS	50.0%
!	GGAGAAACACCGTGTTGTTG+AGG	-	chr3.2:83713540-83713559	None:intergenic	50.0%
	AAACCTAACTCCTCCGGCGA+CGG	+	chr3.2:83713204-83713223	MS.gene052166:CDS	55.0%
	ACGGCCGTGAAAAGTAACGG+TGG	-	chr3.2:83713484-83713503	None:intergenic	55.0%
	CCGTTGGAGGAAGATGAAGG+TGG	+	chr3.2:83713702-83713721	MS.gene052166:CDS	55.0%
	CTCGCAGAATGTTTCCGGTG+CGG	+	chr3.2:83713758-83713777	MS.gene052166:CDS	55.0%
	GGAGTTAGGTTTCTGAGCGG+TGG	-	chr3.2:83713196-83713215	None:intergenic	55.0%
	TTGTCCACTATCCACCGCAC+CGG	-	chr3.2:83713775-83713794	None:intergenic	55.0%
!	ATCTCGCTTGCTGGACCACA+AGG	+	chr3.2:83713582-83713601	MS.gene052166:CDS	55.0%
!!	GAAGGTGGAAACTCGGTGTC+TGG	+	chr3.2:83713717-83713736	MS.gene052166:CDS	55.0%
!!	GATAGTGGACAAGGTGGTGG+TGG	+	chr3.2:83713783-83713802	MS.gene052166:CDS	55.0%
!!	GTGGATAGTGGACAAGGTGG+TGG	+	chr3.2:83713780-83713799	MS.gene052166:CDS	55.0%
	CACAACAACAACAGCGGCGG+TGG	+	chr3.2:83713168-83713187	MS.gene052166:CDS	60.0%
	CTCGATAGTTGCACCGTCGC+CGG	-	chr3.2:83713220-83713239	None:intergenic	60.0%
	GAGGTTTCAAGACGGCCGAG+AGG	+	chr3.2:83713237-83713256	MS.gene052166:CDS	60.0%
	GCAGAATGTTTCCGGTGCGG+TGG	+	chr3.2:83713761-83713780	MS.gene052166:CDS	60.0%
	GTTTCCGGTGCGGTGGATAG+TGG	+	chr3.2:83713768-83713787	MS.gene052166:CDS	60.0%
!	CACCGCCGCTGTTGTTGTTG+TGG	-	chr3.2:83713170-83713189	None:intergenic	60.0%
!!	GCGGTGGATAGTGGACAAGG+TGG	+	chr3.2:83713777-83713796	MS.gene052166:CDS	60.0%
!!	GGTGCGGTGGATAGTGGACA+AGG	+	chr3.2:83713774-83713793	MS.gene052166:CDS	60.0%
!!	GGTGGAAACTCGGTGTCTGG+CGG	+	chr3.2:83713720-83713739	MS.gene052166:CDS	60.0%
!!	GGTGGTGGTGGTCTAGCAGA+CGG	-	chr3.2:83713870-83713889	None:intergenic	60.0%
	CGGCGACGGTGCAACTATCG+AGG	+	chr3.2:83713218-83713237	MS.gene052166:CDS	65.0%
	GAGCCAGGTGGACGTCCTCT+CGG	-	chr3.2:83713255-83713274	None:intergenic	65.0%
	GATAGTTGCACCGTCGCCGG+AGG	-	chr3.2:83713217-83713236	None:intergenic	65.0%
!	GTGTCTGGCGGTGGTGGTGA+TGG	+	chr3.2:83713732-83713751	MS.gene052166:CDS	65.0%
!!	AACTCGGTGTCTGGCGGTGG+TGG	+	chr3.2:83713726-83713745	MS.gene052166:CDS	65.0%
!!	GGAAACTCGGTGTCTGGCGG+TGG	+	chr3.2:83713723-83713742	MS.gene052166:CDS	65.0%
	GCACCGTCGCCGGAGGAGTT+AGG	-	chr3.2:83713210-83713229	None:intergenic	70.0%
!!	GGTGGTGGTGGCGAGTCGTG+TGG	+	chr3.2:83713795-83713814	MS.gene052166:CDS	70.0%
	CGGCCGAGAGGACGTCCACC+TGG	+	chr3.2:83713249-83713268	MS.gene052166:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	83712991	83713896	83712991	ID=MS.gene052166
chr3.2	mRNA	83712991	83713896	83712991	ID=MS.gene052166.t1;Parent=MS.gene052166
chr3.2	exon	83712991	83713896	83712991	ID=MS.gene052166.t1.exon1;Parent=MS.gene052166.t1
chr3.2	CDS	83712991	83713896	83712991	ID=cds.MS.gene052166.t1;Parent=MS.gene052166.t1

Gene Sequence

>MS.gene052166

ATGAAAGGAGAATACGTAGAGCAACATTCTTCAAATCCCAACAAAGGAGGAAATGAAACACCACCACCTTCTTTACTATTCTCAAAGCTTCATCAATCACAATCACAATCACAATCCCCATTTCACCCTTTTCAACTTTCACAACATGAATGTCAACCAATCGGTGAAGATGATAACCACAACAACAACAGCGGCGGTGGTGCCACCGCTCAGAAACCTAACTCCTCCGGCGACGGTGCAACTATCGAGGTTTCAAGACGGCCGAGAGGACGTCCACCTGGCTCAAAAAACAAACCAAAACCACCTATTATCATAACAAGGGATCCAGAAACTGTGATGAGTCCTTTTATTCTAGAAGTTTGTGGTGGAAACGATGTTGTTGAAGCTATTTCAGAGTTTAGTCGTCGCAAGAATATTGGTTTATGTGTTTTAACTGGTTCAGGAACTGTTGCTAATGTTACTCTTCGTCAACCTTCAACTACACCAGGAACCACCGTTACTTTTCACGGCCGTTTTGATATTCTTTCTATAACCGCCACTTTTGTTCCTCAACAACACGGTGTTTCTCCGGCGATTCCGAGTAACTTCTCGATCTCGCTTGCTGGACCACAAGGACAGATTGTTGGAGGAATTGTTGCTGGAAATTTGATAGCTGCAGGGACGGTGTTTGTGATAGCTTCTTCGTTTAATAATCCGTCGTATCATAGGCTTCCGTTGGAGGAAGATGAAGGTGGAAACTCGGTGTCTGGCGGTGGTGGTGATGGAAACTCGCAGAATGTTTCCGGTGCGGTGGATAGTGGACAAGGTGGTGGTGGCGAGTCGTGTGGCATGTCGATGTACAACTGTCATTTGCCGTCGTCTGATGTGATTTGGGCTCCGTCTGCTAGACCACCACCACCTTACTGA

Protein sequence

>MS.gene052166.t1

MKGEYVEQHSSNPNKGGNETPPPSLLFSKLHQSQSQSQSPFHPFQLSQHECQPIGEDDNHNNNSGGGATAQKPNSSGDGATIEVSRRPRGRPPGSKNKPKPPIIITRDPETVMSPFILEVCGGNDVVEAISEFSRRKNIGLCVLTGSGTVANVTLRQPSTTPGTTVTFHGRFDILSITATFVPQQHGVSPAIPSNFSISLAGPQGQIVGGIVAGNLIAAGTVFVIASSFNNPSYHRLPLEEDEGGNSVSGGGGDGNSQNVSGAVDSGQGGGGESCGMSMYNCHLPSSDVIWAPSARPPPPY