Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48566.t1 | XP_013447616.1 | 93.7 | 271 | 11 | 2 | 4 | 274 | 1 | 265 | 3.30E-143 | 517.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48566.t1 | Q6DI37 | 25.4 | 240 | 148 | 10 | 12 | 243 | 91 | 307 | 9.5e-06 | 52.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48566.t1 | A0A072TW64 | 93.7 | 271 | 11 | 2 | 4 | 274 | 1 | 265 | 2.4e-143 | 517.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055147 | MS.gene48566 | 0.804489 | 2.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48566.t1 | MTR_7g015170 | 93.727 | 271 | 11 | 2 | 4 | 274 | 1 | 265 | 0.0 | 519 |
| MS.gene48566.t1 | MTR_7g015150 | 85.401 | 274 | 39 | 1 | 2 | 274 | 15 | 288 | 3.31e-171 | 475 |
| MS.gene48566.t1 | MTR_7g015130 | 82.374 | 278 | 36 | 3 | 4 | 274 | 1 | 272 | 6.08e-167 | 463 |
| MS.gene48566.t1 | MTR_7g015180 | 80.147 | 272 | 52 | 2 | 4 | 274 | 1 | 271 | 3.02e-160 | 446 |
| MS.gene48566.t1 | MTR_7g015130 | 84.141 | 227 | 29 | 1 | 55 | 274 | 11 | 237 | 1.41e-142 | 400 |
| MS.gene48566.t1 | MTR_7g015130 | 79.556 | 225 | 33 | 3 | 4 | 221 | 1 | 219 | 9.10e-126 | 357 |
| MS.gene48566.t1 | MTR_7g015130 | 79.464 | 224 | 33 | 3 | 4 | 220 | 1 | 218 | 7.25e-125 | 354 |
| MS.gene48566.t1 | MTR_7g015190 | 62.547 | 267 | 91 | 6 | 9 | 273 | 47 | 306 | 1.88e-117 | 339 |
| MS.gene48566.t1 | MTR_7g015190 | 66.949 | 236 | 75 | 3 | 31 | 265 | 102 | 335 | 3.00e-114 | 332 |
| MS.gene48566.t1 | MTR_7g015190 | 55.282 | 284 | 100 | 8 | 9 | 273 | 47 | 322 | 1.64e-100 | 296 |
| MS.gene48566.t1 | MTR_7g015190 | 55.282 | 284 | 101 | 8 | 9 | 273 | 47 | 323 | 1.95e-100 | 296 |
| MS.gene48566.t1 | MTR_2g060670 | 52.511 | 219 | 101 | 1 | 52 | 267 | 492 | 710 | 7.06e-79 | 253 |
| MS.gene48566.t1 | MTR_2g060670 | 56.410 | 156 | 65 | 1 | 52 | 204 | 492 | 647 | 7.60e-59 | 199 |
| MS.gene48566.t1 | MTR_7g103560 | 40.598 | 234 | 126 | 4 | 42 | 269 | 34 | 260 | 4.70e-57 | 184 |
| MS.gene48566.t1 | MTR_7g103570 | 41.333 | 225 | 120 | 3 | 41 | 260 | 27 | 244 | 2.58e-55 | 179 |
| MS.gene48566.t1 | MTR_7g103410 | 40.761 | 184 | 102 | 3 | 85 | 266 | 65 | 243 | 3.52e-48 | 160 |
| MS.gene48566.t1 | MTR_7g103570 | 40.571 | 175 | 91 | 4 | 28 | 197 | 15 | 181 | 1.56e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48566.t1 | AT3G29760 | 54.680 | 203 | 91 | 1 | 65 | 267 | 318 | 519 | 2.37e-82 | 257 |
| MS.gene48566.t1 | AT3G29760 | 54.680 | 203 | 91 | 1 | 65 | 267 | 318 | 519 | 2.37e-82 | 257 |
| MS.gene48566.t1 | AT3G29760 | 48.472 | 229 | 91 | 2 | 65 | 267 | 318 | 545 | 2.97e-76 | 242 |
| MS.gene48566.t1 | AT4G26190 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 1.36e-67 | 226 |
| MS.gene48566.t1 | AT4G26190 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 1.36e-67 | 226 |
| MS.gene48566.t1 | AT4G26190 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 1.36e-67 | 226 |
| MS.gene48566.t1 | AT4G26190 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 1.36e-67 | 226 |
| MS.gene48566.t1 | AT4G26190 | 48.131 | 214 | 110 | 1 | 51 | 264 | 841 | 1053 | 1.36e-67 | 226 |
| MS.gene48566.t1 | AT3G29760 | 55.944 | 143 | 60 | 2 | 65 | 207 | 318 | 457 | 1.13e-53 | 181 |
| MS.gene48566.t1 | AT2G36540 | 36.979 | 192 | 102 | 4 | 72 | 263 | 72 | 244 | 3.42e-39 | 137 |
| MS.gene48566.t1 | AT2G36550 | 39.098 | 133 | 73 | 2 | 136 | 268 | 17 | 141 | 3.13e-28 | 105 |
| MS.gene48566.t1 | AT3G29760 | 50.704 | 71 | 34 | 1 | 65 | 135 | 318 | 387 | 2.67e-19 | 87.0 |
Find 37 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTGTTCTTGATTTAAA+TGG | 0.160699 | 7.2:+82727089 | MS.gene48566:CDS |
| TTAAGGATCTAAGGAAAATT+TGG | 0.214094 | 7.2:+82728589 | MS.gene48566:CDS |
| TTCAGAAACTCGTGATAAAA+AGG | 0.276322 | 7.2:-82727596 | None:intergenic |
| CCCCTCTCCCAAGGAAGATT+TGG | 0.307541 | 7.2:-82728624 | None:intergenic |
| TAAGGATCTAAGGAAAATTT+GGG | 0.340790 | 7.2:+82728590 | MS.gene48566:CDS |
| TGGCGATTTACGACAATATC+TGG | 0.361316 | 7.2:+82729283 | MS.gene48566:CDS |
| ACTGGCAACTGCTGAAAATA+TGG | 0.366395 | 7.2:+82729310 | MS.gene48566:CDS |
| AATCAGAATGACAATTCATT+AGG | 0.409111 | 7.2:+82728867 | MS.gene48566:CDS |
| TCACTGAAACAAGTGAATCT+TGG | 0.412951 | 7.2:+82729372 | MS.gene48566:CDS |
| CACTGAAACAAGTGAATCTT+GGG | 0.414915 | 7.2:+82729373 | MS.gene48566:CDS |
| TTCATGGCTATGAATGCATC+TGG | 0.415674 | 7.2:-82727155 | None:intergenic |
| AGTATGATCCAAATCTTCCT+TGG | 0.468731 | 7.2:+82728616 | MS.gene48566:CDS |
| GTGATACGTTCTTGACCAAA+TGG | 0.469114 | 7.2:-82729353 | None:intergenic |
| GCATCTGGTTTAACATGCCT+TGG | 0.471433 | 7.2:-82727140 | None:intergenic |
| CAGTGTTATTGATTATTTGA+TGG | 0.474248 | 7.2:+82727771 | MS.gene48566:CDS |
| TATGTAGAGCAACATCCATT+TGG | 0.482270 | 7.2:+82729338 | MS.gene48566:CDS |
| TATAGATTAAATGAAGAAGA+TGG | 0.484181 | 7.2:+82726917 | None:intergenic |
| CGAGAACAAGCGCAAGCCAC+TGG | 0.490249 | 7.2:+82728563 | MS.gene48566:CDS |
| TCAATTGAAATATTATCAGT+TGG | 0.493002 | 7.2:+82727047 | MS.gene48566:CDS |
| AGTGTTATTGATTATTTGAT+GGG | 0.517466 | 7.2:+82727772 | MS.gene48566:CDS |
| GTATGATCCAAATCTTCCTT+GGG | 0.519547 | 7.2:+82728617 | MS.gene48566:CDS |
| CTGCTTTGAGAGATTTGAAG+TGG | 0.522255 | 7.2:+82727622 | MS.gene48566:CDS |
| GCTGGATGATTCTCCGTACA+AGG | 0.528813 | 7.2:+82728674 | MS.gene48566:CDS |
| GGTTTAACATGCCTTGGATG+TGG | 0.529199 | 7.2:-82727134 | None:intergenic |
| TGAGTCAAACACATTGCTGC+TGG | 0.536574 | 7.2:+82728656 | MS.gene48566:CDS |
| ATCCAAATCTTCCTTGGGAG+AGG | 0.538624 | 7.2:+82728622 | MS.gene48566:CDS |
| GGATTAAGCAGCGCCTTGTA+CGG | 0.548018 | 7.2:-82728687 | None:intergenic |
| CCAAATCTTCCTTGGGAGAG+GGG | 0.550802 | 7.2:+82728624 | MS.gene48566:CDS |
| TCCAAATCTTCCTTGGGAGA+GGG | 0.557235 | 7.2:+82728623 | MS.gene48566:CDS |
| ACGACAATATCTGGATGGAC+TGG | 0.567504 | 7.2:+82729292 | MS.gene48566:CDS |
| TTGTAATATCCCCTCTCCCA+AGG | 0.593037 | 7.2:-82728633 | None:intergenic |
| TTCTCATAACTGAATGTATG+CGG | 0.630484 | 7.2:-82728846 | None:intergenic |
| AAAGACTATTGATAACATTG+AGG | 0.642049 | 7.2:-82729403 | None:intergenic |
| TGCGGAAAGATTGAGTTGTA+CGG | 0.644719 | 7.2:-82728828 | None:intergenic |
| TGATGGGAGACATGAAACAA+AGG | 0.653332 | 7.2:+82727788 | MS.gene48566:CDS |
| AGAGATTTGAAGTGGCTGTG+TGG | 0.661167 | 7.2:+82727630 | MS.gene48566:CDS |
| GATTTACGACAATATCTGGA+TGG | 0.663493 | 7.2:+82729287 | MS.gene48566:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATATGTTTAATTAAATC+TGG | + | chr7.2:82727926-82727945 | MS.gene48566:intron | 15.0% |
| !!! | ATTAAGCATTTAATTTTGAT+AGG | + | chr7.2:82727251-82727270 | MS.gene48566:intron | 15.0% |
| !!! | TTAATCTATTTTCTAATGAT+TGG | + | chr7.2:82727541-82727560 | MS.gene48566:intron | 15.0% |
| !! | CATATAAAACACTGTTTAAT+AGG | - | chr7.2:82728974-82728993 | None:intergenic | 20.0% |
| !! | CTTATTGTTCTTGATTTAAA+TGG | + | chr7.2:82727089-82727108 | MS.gene48566:CDS | 20.0% |
| !! | TCAATTGAAATATTATCAGT+TGG | + | chr7.2:82727047-82727066 | MS.gene48566:CDS | 20.0% |
| !! | TTCAAATTCAAACATAAGAT+TGG | - | chr7.2:82727297-82727316 | None:intergenic | 20.0% |
| !! | TTTGTAGACAATTAGTTATT+AGG | + | chr7.2:82727699-82727718 | MS.gene48566:intron | 20.0% |
| !!! | AGTGTTATTGATTATTTGAT+GGG | + | chr7.2:82727772-82727791 | MS.gene48566:CDS | 20.0% |
| !!! | CGTCTGTTTTATAATTTTTT+AGG | + | chr7.2:82727737-82727756 | MS.gene48566:intron | 20.0% |
| !!! | GTAATCTTTTCATTGTATTA+GGG | + | chr7.2:82727978-82727997 | MS.gene48566:intron | 20.0% |
| !!! | TATTTTTTAGCAATAAGTGA+AGG | + | chr7.2:82729026-82729045 | MS.gene48566:intron | 20.0% |
| !!! | TGTAATCTTTTCATTGTATT+AGG | + | chr7.2:82727977-82727996 | MS.gene48566:intron | 20.0% |
| ! | AAAGATTACACAACTAAACA+TGG | - | chr7.2:82727967-82727986 | None:intergenic | 25.0% |
| ! | AATATAAAGACACATCAACT+TGG | + | chr7.2:82728202-82728221 | MS.gene48566:intron | 25.0% |
| ! | AATCAGAATGACAATTCATT+AGG | + | chr7.2:82728867-82728886 | MS.gene48566:CDS | 25.0% |
| ! | ATATAAAGACACATCAACTT+GGG | + | chr7.2:82728203-82728222 | MS.gene48566:intron | 25.0% |
| ! | ATATACACAATCAATGAGTA+AGG | - | chr7.2:82727505-82727524 | None:intergenic | 25.0% |
| ! | TAAGGATCTAAGGAAAATTT+GGG | + | chr7.2:82728590-82728609 | MS.gene48566:CDS | 25.0% |
| ! | TACTGATGAAAAAGAAGAAA+AGG | + | chr7.2:82727004-82727023 | MS.gene48566:CDS | 25.0% |
| ! | TCTACGTATATTTGTAAACT+CGG | + | chr7.2:82728905-82728924 | MS.gene48566:intron | 25.0% |
| ! | TTAAGGATCTAAGGAAAATT+TGG | + | chr7.2:82728589-82728608 | MS.gene48566:CDS | 25.0% |
| !! | AAAGACTATTGATAACATTG+AGG | - | chr7.2:82729406-82729425 | None:intergenic | 25.0% |
| !! | ATAATGCATAGCATAAGTTT+TGG | - | chr7.2:82729231-82729250 | None:intergenic | 25.0% |
| !! | CAGTGTTATTGATTATTTGA+TGG | + | chr7.2:82727771-82727790 | MS.gene48566:CDS | 25.0% |
| !! | CATTGATTGTGTATATGAAT+TGG | + | chr7.2:82727509-82727528 | MS.gene48566:intron | 25.0% |
| !! | GATGTTTTCATAAGTTATTC+TGG | - | chr7.2:82729186-82729205 | None:intergenic | 25.0% |
| !!! | TGTAGCTTTCTTTTAAGATT+TGG | + | chr7.2:82728992-82729011 | MS.gene48566:intron | 25.0% |
| !!! | TTTCATTTTTAGCAGTATCA+TGG | + | chr7.2:82728018-82728037 | MS.gene48566:intron | 25.0% |
| AATAGGTAAAAGAGCAATTG+AGG | - | chr7.2:82728957-82728976 | None:intergenic | 30.0% | |
| AGCAAATAGTAACATCAACA+TGG | + | chr7.2:82729051-82729070 | MS.gene48566:intron | 30.0% | |
| CATTCTACATATTCTTTGAC+AGG | + | chr7.2:82728503-82728522 | MS.gene48566:intron | 30.0% | |
| CGATAAATATGGAATCTTAG+AGG | + | chr7.2:82728294-82728313 | MS.gene48566:intron | 30.0% | |
| CGTTACAAAGATCTCAAATT+CGG | + | chr7.2:82728113-82728132 | MS.gene48566:intron | 30.0% | |
| CTTTATATTGCGGAAAAATG+TGG | + | chr7.2:82728060-82728079 | MS.gene48566:intron | 30.0% | |
| GAATGACAATTCATTAGGTA+TGG | + | chr7.2:82728872-82728891 | MS.gene48566:intron | 30.0% | |
| TTCAGAAACTCGTGATAAAA+AGG | - | chr7.2:82727599-82727618 | None:intergenic | 30.0% | |
| TTCTCATAACTGAATGTATG+CGG | - | chr7.2:82728849-82728868 | None:intergenic | 30.0% | |
| ! | CACATTTTTCCGCAATATAA+AGG | - | chr7.2:82728062-82728081 | None:intergenic | 30.0% |
| ! | CGAATTTGAGATCTTTGTAA+CGG | - | chr7.2:82728115-82728134 | None:intergenic | 30.0% |
| ! | GACAGTGTTAGTTTATTTAC+AGG | - | chr7.2:82728711-82728730 | None:intergenic | 30.0% |
| !! | AACAAAGGTTGATTTTCTGT+TGG | + | chr7.2:82727803-82727822 | MS.gene48566:CDS | 30.0% |
| !! | ACAAAGGTTGATTTTCTGTT+GGG | + | chr7.2:82727804-82727823 | MS.gene48566:CDS | 30.0% |
| !! | ATATTGTTTTTCCACATCCA+AGG | + | chr7.2:82727123-82727142 | MS.gene48566:CDS | 30.0% |
| !! | GAATCTGTTTCTGTTAGATT+TGG | + | chr7.2:82727891-82727910 | MS.gene48566:intron | 30.0% |
| !! | TGCATTGCTTTTAGCATAAT+TGG | + | chr7.2:82728477-82728496 | MS.gene48566:intron | 30.0% |
| !!! | CTTTTTTAGTAAGCTATCAC+AGG | - | chr7.2:82729122-82729141 | None:intergenic | 30.0% |
| AGTATGATCCAAATCTTCCT+TGG | + | chr7.2:82728616-82728635 | MS.gene48566:CDS | 35.0% | |
| ATTTCCTACTGTGGTAGTTT+CGG | - | chr7.2:82728405-82728424 | None:intergenic | 35.0% | |
| CACTATGAGCCTTTATATTG+CGG | + | chr7.2:82728050-82728069 | MS.gene48566:intron | 35.0% | |
| CACTGAAACAAGTGAATCTT+GGG | + | chr7.2:82729373-82729392 | MS.gene48566:CDS | 35.0% | |
| CGTATATTTGTAAACTCGGA+AGG | + | chr7.2:82728909-82728928 | MS.gene48566:intron | 35.0% | |
| CTAGCTATACAACGCTTATA+TGG | - | chr7.2:82728163-82728182 | None:intergenic | 35.0% | |
| CTTAGATCCTTAAAAACCAG+TGG | - | chr7.2:82728582-82728601 | None:intergenic | 35.0% | |
| GATTTACGACAATATCTGGA+TGG | + | chr7.2:82729287-82729306 | MS.gene48566:CDS | 35.0% | |
| GTAAAAGAGCAATTGAGGAA+GGG | - | chr7.2:82728952-82728971 | None:intergenic | 35.0% | |
| GTATGATCCAAATCTTCCTT+GGG | + | chr7.2:82728617-82728636 | MS.gene48566:CDS | 35.0% | |
| GTCACTACAGTCGATAAATA+TGG | + | chr7.2:82728283-82728302 | MS.gene48566:intron | 35.0% | |
| TATGTAGAGCAACATCCATT+TGG | + | chr7.2:82729338-82729357 | MS.gene48566:CDS | 35.0% | |
| TCACTGAAACAAGTGAATCT+TGG | + | chr7.2:82729372-82729391 | MS.gene48566:CDS | 35.0% | |
| ! | CTTTTTCTCACATGCTTTCA+TGG | - | chr7.2:82727174-82727193 | None:intergenic | 35.0% |
| ! | TAAGCGTTGTATAGCTAGTT+CGG | + | chr7.2:82728165-82728184 | MS.gene48566:intron | 35.0% |
| !!! | CACTGGTTTTTAAGGATCTA+AGG | + | chr7.2:82728580-82728599 | MS.gene48566:CDS | 35.0% |
| ACACCTTCAGTTTGGATTGT+CGG | + | chr7.2:82727423-82727442 | MS.gene48566:intron | 40.0% | |
| ACCATCCGATCTTTGACATA+TGG | + | chr7.2:82728379-82728398 | MS.gene48566:intron | 40.0% | |
| ACTGGCAACTGCTGAAAATA+TGG | + | chr7.2:82729310-82729329 | MS.gene48566:CDS | 40.0% | |
| AGCCATCACATATTGTGACA+TGG | + | chr7.2:82728768-82728787 | MS.gene48566:intron | 40.0% | |
| AGCCATGTCACAATATGTGA+TGG | - | chr7.2:82728773-82728792 | None:intergenic | 40.0% | |
| GGTAAAAGAGCAATTGAGGA+AGG | - | chr7.2:82728953-82728972 | None:intergenic | 40.0% | |
| GTGATACGTTCTTGACCAAA+TGG | - | chr7.2:82729356-82729375 | None:intergenic | 40.0% | |
| TCCCATGTTGTGTCGAAAAT+CGG | + | chr7.2:82727398-82727417 | MS.gene48566:intron | 40.0% | |
| TGATGGGAGACATGAAACAA+AGG | + | chr7.2:82727788-82727807 | MS.gene48566:CDS | 40.0% | |
| TGCTGACAGCAAATCATGAT+AGG | + | chr7.2:82728424-82728443 | MS.gene48566:intron | 40.0% | |
| TGGCGATTTACGACAATATC+TGG | + | chr7.2:82729283-82729302 | MS.gene48566:CDS | 40.0% | |
| TTCATCAACACGTTGACCAT+AGG | - | chr7.2:82728799-82728818 | None:intergenic | 40.0% | |
| TTCATGGCTATGAATGCATC+TGG | - | chr7.2:82727158-82727177 | None:intergenic | 40.0% | |
| TTCGGCCATATGTCAAAGAT+CGG | - | chr7.2:82728387-82728406 | None:intergenic | 40.0% | |
| TTGTGACATGGCTTAACCTA+TGG | + | chr7.2:82728780-82728799 | MS.gene48566:intron | 40.0% | |
| ! | TCCGATTTTCGACACAACAT+GGG | - | chr7.2:82727402-82727421 | None:intergenic | 40.0% |
| ! | TGCGGAAAGATTGAGTTGTA+CGG | - | chr7.2:82728831-82728850 | None:intergenic | 40.0% |
| ! | TGTTTTCCTCAGTATTCGAG+AGG | + | chr7.2:82727573-82727592 | MS.gene48566:intron | 40.0% |
| !! | CTGCTTTGAGAGATTTGAAG+TGG | + | chr7.2:82727622-82727641 | MS.gene48566:CDS | 40.0% |
| !!! | GATGGTTTTTGGTGAAGCAA+AGG | + | chr7.2:82726935-82726954 | MS.gene48566:CDS | 40.0% |
| AAAAGGCCTCTCGAATACTG+AGG | - | chr7.2:82727582-82727601 | None:intergenic | 45.0% | |
| AATCGGACACACCTTCAGTT+TGG | + | chr7.2:82727415-82727434 | MS.gene48566:intron | 45.0% | |
| ACGACAATATCTGGATGGAC+TGG | + | chr7.2:82729292-82729311 | MS.gene48566:CDS | 45.0% | |
| ATCCAAATCTTCCTTGGGAG+AGG | + | chr7.2:82728622-82728641 | MS.gene48566:CDS | 45.0% | |
| CGTTGTATAGCTAGTTCGGT+AGG | + | chr7.2:82728169-82728188 | MS.gene48566:intron | 45.0% | |
| GCCATATGTCAAAGATCGGA+TGG | - | chr7.2:82728383-82728402 | None:intergenic | 45.0% | |
| GGTTTAACATGCCTTGGATG+TGG | - | chr7.2:82727137-82727156 | None:intergenic | 45.0% | |
| TCCAAATCTTCCTTGGGAGA+GGG | + | chr7.2:82728623-82728642 | MS.gene48566:CDS | 45.0% | |
| TGAGTCAAACACATTGCTGC+TGG | + | chr7.2:82728656-82728675 | MS.gene48566:CDS | 45.0% | |
| TGTAGTGACTGCAGACAATC+TGG | - | chr7.2:82728272-82728291 | None:intergenic | 45.0% | |
| TTGTAATATCCCCTCTCCCA+AGG | - | chr7.2:82728636-82728655 | None:intergenic | 45.0% | |
| ! | AGAGATTTGAAGTGGCTGTG+TGG | + | chr7.2:82727630-82727649 | MS.gene48566:CDS | 45.0% |
| ! | GCATCTGGTTTAACATGCCT+TGG | - | chr7.2:82727143-82727162 | None:intergenic | 45.0% |
| ! | GTCCGATTTTCGACACAACA+TGG | - | chr7.2:82727403-82727422 | None:intergenic | 45.0% |
| ! | TGTTTTTCGTCAGCTGCTGA+TGG | + | chr7.2:82729263-82729282 | MS.gene48566:intron | 45.0% |
| !! | TTGGATTGTCGGTGCTACAT+AGG | + | chr7.2:82727434-82727453 | MS.gene48566:intron | 45.0% |
| ATGGCCGAAACTACCACAGT+AGG | + | chr7.2:82728398-82728417 | MS.gene48566:intron | 50.0% | |
| CCAAATCTTCCTTGGGAGAG+GGG | + | chr7.2:82728624-82728643 | MS.gene48566:CDS | 50.0% | |
| GCTGGATGATTCTCCGTACA+AGG | + | chr7.2:82728674-82728693 | MS.gene48566:CDS | 50.0% | |
| GCTGTCAGCATTTCCTACTG+TGG | - | chr7.2:82728414-82728433 | None:intergenic | 50.0% | |
| GGATTAAGCAGCGCCTTGTA+CGG | - | chr7.2:82728690-82728709 | None:intergenic | 50.0% | |
| GGTCTCGCAAGTGGTTATGT+CGG | - | chr7.2:82729101-82729120 | None:intergenic | 50.0% | |
| ! | GCACCGACAATCCAAACTGA+AGG | - | chr7.2:82727429-82727448 | None:intergenic | 50.0% |
| !!! | GCGCAAGCCACTGGTTTTTA+AGG | + | chr7.2:82728572-82728591 | MS.gene48566:CDS | 50.0% |
| CCCCTCTCCCAAGGAAGATT+TGG | - | chr7.2:82728627-82728646 | None:intergenic | 55.0% | |
| GCTATCACAGGTCTCGCAAG+TGG | - | chr7.2:82729110-82729129 | None:intergenic | 55.0% | |
| CGAGAACAAGCGCAAGCCAC+TGG | + | chr7.2:82728563-82728582 | MS.gene48566:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 82726927 | 82729448 | 82726927 | ID=MS.gene48566 |
| chr7.2 | mRNA | 82726927 | 82729448 | 82726927 | ID=MS.gene48566.t1;Parent=MS.gene48566 |
| chr7.2 | exon | 82726927 | 82727182 | 82726927 | ID=MS.gene48566.t1.exon1;Parent=MS.gene48566.t1 |
| chr7.2 | CDS | 82726927 | 82727182 | 82726927 | ID=cds.MS.gene48566.t1;Parent=MS.gene48566.t1 |
| chr7.2 | exon | 82727585 | 82727666 | 82727585 | ID=MS.gene48566.t1.exon2;Parent=MS.gene48566.t1 |
| chr7.2 | CDS | 82727585 | 82727666 | 82727585 | ID=cds.MS.gene48566.t1;Parent=MS.gene48566.t1 |
| chr7.2 | exon | 82727759 | 82727825 | 82727759 | ID=MS.gene48566.t1.exon3;Parent=MS.gene48566.t1 |
| chr7.2 | CDS | 82727759 | 82727825 | 82727759 | ID=cds.MS.gene48566.t1;Parent=MS.gene48566.t1 |
| chr7.2 | exon | 82728525 | 82728710 | 82728525 | ID=MS.gene48566.t1.exon4;Parent=MS.gene48566.t1 |
| chr7.2 | CDS | 82728525 | 82728710 | 82728525 | ID=cds.MS.gene48566.t1;Parent=MS.gene48566.t1 |
| chr7.2 | exon | 82728828 | 82728888 | 82728828 | ID=MS.gene48566.t1.exon5;Parent=MS.gene48566.t1 |
| chr7.2 | CDS | 82728828 | 82728888 | 82728828 | ID=cds.MS.gene48566.t1;Parent=MS.gene48566.t1 |
| chr7.2 | exon | 82729276 | 82729448 | 82729276 | ID=MS.gene48566.t1.exon6;Parent=MS.gene48566.t1 |
| chr7.2 | CDS | 82729276 | 82729448 | 82729276 | ID=cds.MS.gene48566.t1;Parent=MS.gene48566.t1 |
| Gene Sequence |
| Protein sequence |
