AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055147


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055147.t1 MTR_7g065600 94.643 224 12 0 1 224 1 224 1.30e-158 438
MS.gene055147.t1 MTR_7g065590 79.911 224 45 0 1 224 1 224 4.60e-135 378
MS.gene055147.t1 MTR_7g065290 77.232 224 51 0 1 224 1 224 6.51e-130 365
MS.gene055147.t1 MTR_7g065265 74.554 224 57 0 1 224 1 224 4.93e-124 350
MS.gene055147.t1 MTR_7g065230 75.893 224 49 1 1 224 1 219 4.17e-123 348
MS.gene055147.t1 MTR_7g065270 73.214 224 60 0 1 224 1 224 9.18e-122 345
MS.gene055147.t1 MTR_7g065260 76.444 225 52 1 1 224 8 232 4.63e-116 330
MS.gene055147.t1 MTR_7g065720 68.889 225 69 1 1 224 1 225 2.63e-114 326
MS.gene055147.t1 MTR_7g065660 67.265 223 73 0 1 223 1 223 1.65e-112 321
MS.gene055147.t1 MTR_7g065740 62.946 224 82 1 1 223 1 224 7.46e-107 307
MS.gene055147.t1 MTR_7g065630 66.368 223 71 1 1 223 19 237 8.59e-107 307
MS.gene055147.t1 MTR_7g065750 63.839 224 80 1 1 223 1 224 2.39e-104 301
MS.gene055147.t1 MTR_4g019790 60.987 223 87 0 1 223 1 223 1.55e-102 296
MS.gene055147.t1 MTR_7g065640 61.435 223 68 1 1 223 1 205 9.07e-99 286
MS.gene055147.t1 MTR_7g065710 64.734 207 69 1 8 214 5 207 4.95e-96 280
MS.gene055147.t1 MTR_4g019780 62.150 214 79 2 3 215 4 216 8.81e-94 274
MS.gene055147.t1 MTR_7g065680 65.315 222 73 1 1 222 1 218 2.56e-92 270
MS.gene055147.t1 MTR_7g065700 64.019 214 73 1 1 214 1 210 9.50e-88 259
MS.gene055147.t1 MTR_1g090150 45.249 221 116 2 5 222 1 219 2.59e-65 202
MS.gene055147.t1 MTR_6g080440 47.826 207 106 2 8 213 4 209 7.77e-64 198
MS.gene055147.t1 MTR_8g087425 47.222 216 112 2 4 218 2 216 2.57e-63 196
MS.gene055147.t1 MTR_3g099757 48.636 220 111 2 5 223 3 221 2.85e-62 194
MS.gene055147.t1 MTR_8g087410 45.161 217 116 3 1 216 1 215 1.86e-58 184
MS.gene055147.t1 MTR_1g115195 45.070 213 114 2 7 216 3 215 2.96e-58 183
MS.gene055147.t1 MTR_5g040430 41.892 222 121 3 1 215 1 221 7.32e-58 182
MS.gene055147.t1 MTR_1g090070 42.273 220 122 3 8 223 10 228 3.43e-56 179
MS.gene055147.t1 MTR_1g090100 42.986 221 120 4 7 223 2 220 3.42e-54 173
MS.gene055147.t1 MTR_5g037380 43.182 220 115 3 1 212 1 218 6.16e-54 172
MS.gene055147.t1 MTR_1g090060 42.081 221 122 4 8 224 4 222 2.47e-53 171
MS.gene055147.t1 MTR_8g061950 42.922 219 117 3 5 215 3 221 2.09e-51 166
MS.gene055147.t1 MTR_4g059730 39.906 213 124 2 6 215 3 214 2.50e-51 166
MS.gene055147.t1 MTR_1g090090 41.176 221 119 5 8 224 4 217 3.30e-50 163
MS.gene055147.t1 MTR_2g070200 40.196 204 118 3 6 207 3 204 4.89e-44 147
MS.gene055147.t1 MTR_3g467420 42.000 200 111 4 7 204 9 205 1.61e-42 143
MS.gene055147.t1 MTR_2g070150 38.235 204 121 4 6 207 3 203 1.99e-42 142
MS.gene055147.t1 MTR_2g070130 37.864 206 123 4 6 209 3 205 4.05e-41 139
MS.gene055147.t1 MTR_2g070180 37.745 204 122 4 6 207 3 203 6.65e-41 139
MS.gene055147.t1 MTR_2g070140 37.629 194 116 4 21 212 2 192 5.99e-40 136
MS.gene055147.t1 MTR_4g124130 43.229 192 99 6 5 191 2 188 7.56e-40 136
MS.gene055147.t1 MTR_3g467430 39.901 203 117 4 4 204 6 205 6.24e-39 134
MS.gene055147.t1 MTR_2g070210 37.915 211 124 5 6 212 3 210 2.16e-38 132
MS.gene055147.t1 MTR_5g076900 38.164 207 123 4 3 207 2 205 2.21e-38 132
MS.gene055147.t1 MTR_8g056940 41.270 189 106 4 6 192 3 188 3.25e-38 132
MS.gene055147.t1 MTR_2g070120 37.864 206 123 4 6 209 3 205 5.06e-38 132
MS.gene055147.t1 MTR_2g070070 38.693 199 117 4 8 204 5 200 3.88e-36 127
MS.gene055147.t1 MTR_2g070060 36.634 202 123 4 8 207 5 203 1.82e-35 125
MS.gene055147.t1 MTR_2g070110 36.715 207 125 4 8 212 5 207 1.43e-30 112
MS.gene055147.t1 MTR_0186s0030 45.385 130 69 2 16 144 13 141 3.41e-30 109
MS.gene055147.t1 MTR_2g072120 44.615 65 35 1 51 114 2 66 3.56e-15 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055147.t1 AT3G09270 50.446 224 107 4 3 223 2 224 5.02e-76 229
MS.gene055147.t1 AT2G29420 48.402 219 111 2 3 220 5 222 2.60e-72 219
MS.gene055147.t1 AT2G29490 47.847 209 106 3 1 207 1 208 3.69e-60 188
MS.gene055147.t1 AT2G29450 43.498 223 124 2 3 223 2 224 5.99e-57 180
MS.gene055147.t1 AT2G29460 43.694 222 122 3 1 220 1 221 1.34e-55 177
MS.gene055147.t1 AT2G29480 44.498 209 113 3 1 207 1 208 2.11e-54 174
MS.gene055147.t1 AT1G10370 43.439 221 116 3 1 214 1 219 4.27e-53 171
MS.gene055147.t1 AT2G29440 41.778 225 127 4 1 223 1 223 7.85e-53 170
MS.gene055147.t1 AT2G29470 43.810 210 114 4 1 207 1 209 1.29e-52 169
MS.gene055147.t1 AT1G69930 39.189 222 129 2 2 217 7 228 1.50e-51 167
MS.gene055147.t1 AT1G10360 41.262 206 114 2 6 204 4 209 3.11e-50 163
MS.gene055147.t1 AT1G27130 40.000 225 126 4 1 217 1 224 2.90e-49 161
MS.gene055147.t1 AT1G59700 44.037 218 114 3 5 214 4 221 5.13e-49 160
MS.gene055147.t1 AT1G59670 43.269 208 110 3 5 204 4 211 8.93e-49 160
MS.gene055147.t1 AT5G62480 39.367 221 123 4 5 215 6 225 2.08e-45 151
MS.gene055147.t1 AT1G27140 38.767 227 129 4 1 218 1 226 7.08e-45 150
MS.gene055147.t1 AT1G78320 40.865 208 118 4 5 210 2 206 2.99e-44 148
MS.gene055147.t1 AT1G17170 40.826 218 121 5 6 220 3 215 3.67e-44 147
MS.gene055147.t1 AT1G78370 40.488 205 117 4 10 212 7 208 1.50e-43 146
MS.gene055147.t1 AT1G78380 41.063 207 117 4 8 212 5 208 1.67e-43 146
MS.gene055147.t1 AT1G69920 37.445 227 132 4 1 217 26 252 1.35e-42 144
MS.gene055147.t1 AT1G78340 41.148 209 118 4 6 212 3 208 1.49e-42 143
MS.gene055147.t1 AT1G74590 34.361 227 142 3 1 221 1 226 5.67e-42 142
MS.gene055147.t1 AT1G53680 38.571 210 124 4 1 207 1 208 9.61e-41 139
MS.gene055147.t1 AT1G17180 37.799 209 125 4 6 212 3 208 2.29e-39 135
MS.gene055147.t1 AT1G78360 39.904 208 119 5 8 212 5 209 1.55e-38 133
MS.gene055147.t1 AT1G17190 38.785 214 124 5 1 212 1 209 1.92e-38 133
MS.gene055147.t1 AT3G43800 35.749 207 124 6 4 204 2 205 1.58e-35 125
MS.gene055147.t1 AT5G62480 31.364 220 116 4 5 215 6 199 7.99e-28 105
MS.gene055147.t1 AT1G78320 33.816 207 107 4 5 210 2 179 1.37e-27 104
MS.gene055147.t1 AT5G62480 31.364 220 115 4 5 215 6 198 1.91e-27 104
MS.gene055147.t1 AT2G02380 28.837 215 134 6 5 207 9 216 1.19e-16 76.3
MS.gene055147.t1 AT2G02390 29.358 218 133 7 3 207 4 213 3.07e-16 75.1
MS.gene055147.t1 AT2G02390 28.444 225 133 8 3 207 4 220 7.64e-14 68.6
MS.gene055147.t1 AT2G02390 40.206 97 54 2 3 96 4 99 2.46e-13 66.6

Find 46 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGCCTTGGCTCGTTTC+TGG 0.120947 7.4:+39335417 MS.gene055147:CDS
GAGCTTAAGGATAATTTCTT+TGG 0.282538 7.4:+39336466 MS.gene055147:CDS
TAAGGATCAGAAGGCAATAT+TGG 0.299422 7.4:-39335392 None:intergenic
ACAGGAACCTTCTTATAAAC+AGG 0.304362 7.4:-39335293 None:intergenic
GCCTCCTAGAGAAGGACTTT+TGG 0.337294 7.4:+39336654 MS.gene055147:CDS
AATTCTTGAGAATGAGCTTA+AGG 0.354197 7.4:+39336453 MS.gene055147:CDS
TTCTTTGGTGGAGAGGAGAT+TGG 0.368042 7.4:+39336481 MS.gene055147:CDS
GGCAATTTATCCTTAACAAC+TGG 0.375316 7.4:-39336634 None:intergenic
TTGACTCCATTTGTAAAGCT+TGG 0.384299 7.4:-39336596 None:intergenic
CACCAACCATCCAGTTGTTA+AGG 0.388600 7.4:+39336624 MS.gene055147:CDS
TGACTCCATTTGTAAAGCTT+GGG 0.390868 7.4:-39336595 None:intergenic
CACTAAGATGGCATCAAATC+AGG 0.391111 7.4:+39335133 None:intergenic
TTTGTTGCTTCTTGTACAAT+GGG 0.408906 7.4:-39336544 None:intergenic
TACAAATATGAGTTAGAAAA+GGG 0.419037 7.4:+39335236 MS.gene055147:CDS
GTTTGTTGCTTCTTGTACAA+TGG 0.430175 7.4:-39336545 None:intergenic
ATCACAAGGGATTCTGATAT+AGG 0.433145 7.4:-39335335 None:intergenic
GACCAAGTTCATAGATGATA+AGG 0.434027 7.4:+39335439 MS.gene055147:CDS
ATACAAATATGAGTTAGAAA+AGG 0.446746 7.4:+39335235 MS.gene055147:CDS
CTTAAGGATAATTTCTTTGG+TGG 0.454634 7.4:+39336469 MS.gene055147:CDS
GGAGATTGCTCTAACATTGA+AGG 0.460355 7.4:+39335205 MS.gene055147:CDS
ATACAACCCTGTTTATAAGA+AGG 0.470144 7.4:+39335286 MS.gene055147:CDS
AATTTCCCAAGCTTTACAAA+TGG 0.474830 7.4:+39336590 MS.gene055147:CDS
TACCTTATCATCTATGAACT+TGG 0.479710 7.4:-39335441 None:intergenic
ATCCTTAACAACTGGATGGT+TGG 0.488666 7.4:-39336626 None:intergenic
ATCTCCACCCTACTCACAAA+TGG 0.497901 7.4:-39335188 None:intergenic
GGCAAGTCCATTTGTGAGTA+GGG 0.523330 7.4:+39335181 MS.gene055147:CDS
GGATAATTTCTTTGGTGGAG+AGG 0.526031 7.4:+39336474 MS.gene055147:CDS
GATAAATTGCCTCCTAGAGA+AGG 0.547220 7.4:+39336646 MS.gene055147:CDS
TGATCCTTACAAAAGAGCCT+TGG 0.548089 7.4:+39335406 MS.gene055147:CDS
TTGAGTATGTCGATGAGACC+TGG 0.549849 7.4:+39335360 MS.gene055147:CDS
TAAGCCAAAAGTCCTTCTCT+AGG 0.550201 7.4:-39336658 None:intergenic
AGAACGTGAGAAAGCTATTG+AGG 0.557970 7.4:+39336411 MS.gene055147:CDS
ATTTATCCTTAACAACTGGA+TGG 0.561475 7.4:-39336630 None:intergenic
AATATGAGTTAGAAAAGGGA+GGG 0.564400 7.4:+39335240 MS.gene055147:CDS
AAATATGAGTTAGAAAAGGG+AGG 0.578650 7.4:+39335239 MS.gene055147:CDS
CAGGAACCTTCTTATAAACA+GGG 0.585709 7.4:-39335292 None:intergenic
GAGATTGCTCTAACATTGAA+GGG 0.597295 7.4:+39335206 MS.gene055147:CDS
CGACATACTCAAGAATCACA+AGG 0.607291 7.4:-39335349 None:intergenic
TGGCAAGTCCATTTGTGAGT+AGG 0.615908 7.4:+39335180 MS.gene055147:CDS
GCCAAAAGTCCTTCTCTAGG+AGG 0.619286 7.4:-39336655 None:intergenic
ACCAGTGTTTAAGTGCTGCA+CGG 0.628510 7.4:+39336362 MS.gene055147:intron
TTATCATTATGAACTAACAC+AGG 0.667310 7.4:-39335311 None:intergenic
CTTGGTCCAGAAACGAGCCA+AGG 0.682377 7.4:-39335423 None:intergenic
TTGTTGCTTCTTGTACAATG+GGG 0.684989 7.4:-39336543 None:intergenic
AAGTCCATTTGTGAGTAGGG+TGG 0.696953 7.4:+39335184 MS.gene055147:CDS
GACATACTCAAGAATCACAA+GGG 0.702786 7.4:-39335348 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTTTTCTTTTTAAAATTA+CGG - chr7.4:39335994-39336013 None:intergenic 10.0%
!!! TAGTTTTCATTTTTAAATTA+CGG + chr7.4:39335865-39335884 MS.gene055147:intron 10.0%
!! AATAAATATGATATTTGAAG+CGG - chr7.4:39336098-39336117 None:intergenic 15.0%
!! AATATTTAAGAAGAATAATC+TGG + chr7.4:39336228-39336247 MS.gene055147:intron 15.0%
!! ATACAAATATGAGTTAGAAA+AGG + chr7.4:39335235-39335254 MS.gene055147:CDS 20.0%
!! TACAAATATGAGTTAGAAAA+GGG + chr7.4:39335236-39335255 MS.gene055147:CDS 20.0%
!!! ACACTGGTTTTAAAAAATTA+AGG - chr7.4:39336350-39336369 None:intergenic 20.0%
!!! ACTTTTAAAGTGTATAAATG+GGG + chr7.4:39335541-39335560 MS.gene055147:intron 20.0%
!!! CACTTTTAAAGTGTATAAAT+GGG + chr7.4:39335540-39335559 MS.gene055147:intron 20.0%
!!! TAAAATATTTCAAAAGCATG+TGG + chr7.4:39335674-39335693 MS.gene055147:intron 20.0%
!!! TCACTTTTAAAGTGTATAAA+TGG + chr7.4:39335539-39335558 MS.gene055147:intron 20.0%
! ATAGAGAAAAACAATACATG+TGG + chr7.4:39335752-39335771 MS.gene055147:intron 25.0%
! ATGACTATTATATATGCATG+TGG + chr7.4:39336136-39336155 MS.gene055147:intron 25.0%
! TGTATATTATATGCAGAGAT+CGG - chr7.4:39335584-39335603 None:intergenic 25.0%
! TTATCATTATGAACTAACAC+AGG - chr7.4:39335314-39335333 None:intergenic 25.0%
! TTATTCAACAAAACGAGTAA+CGG + chr7.4:39336113-39336132 MS.gene055147:intron 25.0%
!! TGAAATATAATGACTTGTGA+CGG - chr7.4:39336185-39336204 None:intergenic 25.0%
!!! ATGTATTGTTTTTCTCTATG+CGG - chr7.4:39335751-39335770 None:intergenic 25.0%
AAATACCACAAACTTCACTA+AGG + chr7.4:39335797-39335816 MS.gene055147:intron 30.0%
AAATATGAGTTAGAAAAGGG+AGG + chr7.4:39335239-39335258 MS.gene055147:CDS 30.0%
AATACCACAAACTTCACTAA+GGG + chr7.4:39335798-39335817 MS.gene055147:intron 30.0%
AATATGAGTTAGAAAAGGGA+GGG + chr7.4:39335240-39335259 MS.gene055147:CDS 30.0%
AATTCTTGAGAATGAGCTTA+AGG + chr7.4:39336453-39336472 MS.gene055147:CDS 30.0%
AATTTCCCAAGCTTTACAAA+TGG + chr7.4:39336590-39336609 MS.gene055147:CDS 30.0%
ATACAACCCTGTTTATAAGA+AGG + chr7.4:39335286-39335305 MS.gene055147:CDS 30.0%
ATTTATCCTTAACAACTGGA+TGG - chr7.4:39336633-39336652 None:intergenic 30.0%
CTTAAGGATAATTTCTTTGG+TGG + chr7.4:39336469-39336488 MS.gene055147:CDS 30.0%
GAGCTTAAGGATAATTTCTT+TGG + chr7.4:39336466-39336485 MS.gene055147:CDS 30.0%
TACCTTATCATCTATGAACT+TGG - chr7.4:39335444-39335463 None:intergenic 30.0%
! ATATTTCAAAAGCATGTGGA+TGG + chr7.4:39335678-39335697 MS.gene055147:intron 30.0%
! TTTGTTGCTTCTTGTACAAT+GGG - chr7.4:39336547-39336566 None:intergenic 30.0%
!! CAATATTGGATTTTGTTTCC+AGG - chr7.4:39335381-39335400 None:intergenic 30.0%
ACAGGAACCTTCTTATAAAC+AGG - chr7.4:39335296-39335315 None:intergenic 35.0%
ATACGCTAGAGAGACATTTA+GGG - chr7.4:39336061-39336080 None:intergenic 35.0%
ATCACAAGGGATTCTGATAT+AGG - chr7.4:39335338-39335357 None:intergenic 35.0%
CAGGAACCTTCTTATAAACA+GGG - chr7.4:39335295-39335314 None:intergenic 35.0%
GAATTACGTTCATGTGATCT+CGG - chr7.4:39335625-39335644 None:intergenic 35.0%
GACATACTCAAGAATCACAA+GGG - chr7.4:39335351-39335370 None:intergenic 35.0%
GACCAAGTTCATAGATGATA+AGG + chr7.4:39335439-39335458 MS.gene055147:CDS 35.0%
GAGATTGCTCTAACATTGAA+GGG + chr7.4:39335206-39335225 MS.gene055147:CDS 35.0%
GGCAATTTATCCTTAACAAC+TGG - chr7.4:39336637-39336656 None:intergenic 35.0%
TAAGGATCAGAAGGCAATAT+TGG - chr7.4:39335395-39335414 None:intergenic 35.0%
TATACGCTAGAGAGACATTT+AGG - chr7.4:39336062-39336081 None:intergenic 35.0%
TGACTCCATTTGTAAAGCTT+GGG - chr7.4:39336598-39336617 None:intergenic 35.0%
TTGACTCCATTTGTAAAGCT+TGG - chr7.4:39336599-39336618 None:intergenic 35.0%
! CAGGAAAATGTGAAGCTTTT+TGG + chr7.4:39335152-39335171 MS.gene055147:CDS 35.0%
! GTTTGTTGCTTCTTGTACAA+TGG - chr7.4:39336548-39336567 None:intergenic 35.0%
! TTGTTGCTTCTTGTACAATG+GGG - chr7.4:39336546-39336565 None:intergenic 35.0%
!! TATAATGACTTGTGACGGAT+TGG - chr7.4:39336180-39336199 None:intergenic 35.0%
!!! TGTGAAGCTTTTTGGAATGA+TGG + chr7.4:39335160-39335179 MS.gene055147:CDS 35.0%
AGAACGTGAGAAAGCTATTG+AGG + chr7.4:39336411-39336430 MS.gene055147:CDS 40.0%
ATCCTTAACAACTGGATGGT+TGG - chr7.4:39336629-39336648 None:intergenic 40.0%
CGACATACTCAAGAATCACA+AGG - chr7.4:39335352-39335371 None:intergenic 40.0%
GATAAATTGCCTCCTAGAGA+AGG + chr7.4:39336646-39336665 MS.gene055147:CDS 40.0%
GGAGATTGCTCTAACATTGA+AGG + chr7.4:39335205-39335224 MS.gene055147:CDS 40.0%
GGATAATTTCTTTGGTGGAG+AGG + chr7.4:39336474-39336493 MS.gene055147:CDS 40.0%
TAAGCCAAAAGTCCTTCTCT+AGG - chr7.4:39336661-39336680 None:intergenic 40.0%
TGATCCTTACAAAAGAGCCT+TGG + chr7.4:39335406-39335425 MS.gene055147:CDS 40.0%
TGTGTTTGGATGGAAGGTTT+AGG + chr7.4:39335821-39335840 MS.gene055147:intron 40.0%
! AACTTCACTAAGGGTGTGTT+TGG + chr7.4:39335807-39335826 MS.gene055147:intron 40.0%
! ATTTGAAGCGGTTCTCAATG+TGG - chr7.4:39336086-39336105 None:intergenic 40.0%
! CTGCAGTCTTCATAGCTTTT+TGG + chr7.4:39336518-39336537 MS.gene055147:CDS 40.0%
! GCTCTTTTGTAAGGATCAGA+AGG - chr7.4:39335404-39335423 None:intergenic 40.0%
! TCTTTATTTGTGCGCATGTG+TGG + chr7.4:39335650-39335669 MS.gene055147:intron 40.0%
AAGTCCATTTGTGAGTAGGG+TGG + chr7.4:39335184-39335203 MS.gene055147:CDS 45.0%
ATCTCCACCCTACTCACAAA+TGG - chr7.4:39335191-39335210 None:intergenic 45.0%
ATGGAAGGTTTAGGAGTGGA+AGG + chr7.4:39335830-39335849 MS.gene055147:intron 45.0%
CACACCCTTAGTGAAGTTTG+TGG - chr7.4:39335805-39335824 None:intergenic 45.0%
CACCAACCATCCAGTTGTTA+AGG + chr7.4:39336624-39336643 MS.gene055147:CDS 45.0%
CTTGGATTGAGGGTTTAGGA+GGG - chr7.4:39336034-39336053 None:intergenic 45.0%
GGCAAGTCCATTTGTGAGTA+GGG + chr7.4:39335181-39335200 MS.gene055147:CDS 45.0%
TCATGTGATCTCGGTTCAGT+TGG - chr7.4:39335616-39335635 None:intergenic 45.0%
TGGAAGGTTTAGGAGTGGAA+GGG + chr7.4:39335831-39335850 MS.gene055147:intron 45.0%
TGGCAAGTCCATTTGTGAGT+AGG + chr7.4:39335180-39335199 MS.gene055147:CDS 45.0%
TGTGCTTGGATTGAGGGTTT+AGG - chr7.4:39336038-39336057 None:intergenic 45.0%
TTAGGGTGTGCTTGGATTGA+GGG - chr7.4:39336044-39336063 None:intergenic 45.0%
TTCTTTGGTGGAGAGGAGAT+TGG + chr7.4:39336481-39336500 MS.gene055147:CDS 45.0%
TTGAGTATGTCGATGAGACC+TGG + chr7.4:39335360-39335379 MS.gene055147:CDS 45.0%
TTGGATGGAAGGTTTAGGAG+TGG + chr7.4:39335826-39335845 MS.gene055147:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr7.4:39336033-39336052 None:intergenic 45.0%
! ACCAGTGTTTAAGTGCTGCA+CGG + chr7.4:39336362-39336381 MS.gene055147:intron 45.0%
! AGAGACATTTAGGGTGTGCT+TGG - chr7.4:39336052-39336071 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATGGA+AGG + chr7.4:39335815-39335834 MS.gene055147:intron 45.0%
! TCACTAAGGGTGTGTTTGGA+TGG + chr7.4:39335811-39335830 MS.gene055147:intron 45.0%
! TGATCTCGGTTCAGTTGGTA+GGG - chr7.4:39335611-39335630 None:intergenic 45.0%
! TTTAGGGTGTGCTTGGATTG+AGG - chr7.4:39336045-39336064 None:intergenic 45.0%
GCCAAAAGTCCTTCTCTAGG+AGG - chr7.4:39336658-39336677 None:intergenic 50.0%
GCTTGGATTGAGGGTTTAGG+AGG - chr7.4:39336035-39336054 None:intergenic 50.0%
GTGATCTCGGTTCAGTTGGT+AGG - chr7.4:39335612-39335631 None:intergenic 50.0%
TAGGAGTGGAAGGGAGATGA+GGG + chr7.4:39335840-39335859 MS.gene055147:intron 50.0%
TCCGTGCAGCACTTAAACAC+TGG - chr7.4:39336366-39336385 None:intergenic 50.0%
TTAGGAGTGGAAGGGAGATG+AGG + chr7.4:39335839-39335858 MS.gene055147:intron 50.0%
! AAAGAGCCTTGGCTCGTTTC+TGG + chr7.4:39335417-39335436 MS.gene055147:CDS 50.0%
! CGAGCCAAGGCTCTTTTGTA+AGG - chr7.4:39335413-39335432 None:intergenic 50.0%
! GCCTCCTAGAGAAGGACTTT+TGG + chr7.4:39336654-39336673 MS.gene055147:CDS 50.0%
ATTGAGGGTTTAGGAGGGGC+AGG - chr7.4:39336029-39336048 None:intergenic 55.0%
CTTGGTCCAGAAACGAGCCA+AGG - chr7.4:39335426-39335445 None:intergenic 55.0%
TTGAGGGTTTAGGAGGGGCA+GGG - chr7.4:39336028-39336047 None:intergenic 55.0%
GGTTTAGGAGGGGCAGGGAG+AGG - chr7.4:39336023-39336042 None:intergenic 65.0%
TAGGAGGGGCAGGGAGAGGA+GGG - chr7.4:39336019-39336038 None:intergenic 65.0%
TTAGGAGGGGCAGGGAGAGG+AGG - chr7.4:39336020-39336039 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 39335140 39336720 39335140 ID=MS.gene055147
chr7.4 mRNA 39335140 39336720 39335140 ID=MS.gene055147.t1;Parent=MS.gene055147
chr7.4 exon 39335140 39335460 39335140 ID=MS.gene055147.t1.exon1;Parent=MS.gene055147.t1
chr7.4 CDS 39335140 39335460 39335140 ID=cds.MS.gene055147.t1;Parent=MS.gene055147.t1
chr7.4 exon 39336367 39336720 39336367 ID=MS.gene055147.t1.exon2;Parent=MS.gene055147.t1
chr7.4 CDS 39336367 39336720 39336367 ID=cds.MS.gene055147.t1;Parent=MS.gene055147.t1
Gene Sequence

>MS.gene055147

ATGGCATCAAATCAGGAAAATGTGAAGCTTTTTGGAATGATGGCAAGTCCATTTGTGAGTAGGGTGGAGATTGCTCTAACATTGAAGGGAGTTGAATACAAATATGAGTTAGAAAAGGGAGGGAACTTGAGTGATACACTCATAAAATACAACCCTGTTTATAAGAAGGTTCCTGTGTTAGTTCATAATGATAAGCCTATATCAGAATCCCTTGTGATTCTTGAGTATGTCGATGAGACCTGGAAACAAAATCCAATATTGCCTTCTGATCCTTACAAAAGAGCCTTGGCTCGTTTCTGGACCAAGTTCATAGATGATAAGGTAATTCTAATCTTCTATTCTTTTTGTTGTGTAATTCTCGTGTCTTGTTTTTTTTCAAGTAATCTAGTGATTAAAAATTCACTTTTAAAGTGTATAAATGGGGTGTTCGAAGTTCGAACTCCGATCTCTGCATATAATATACAGTGTCCCTACCAACTGAACCGAGATCACATGAACGTAATTCTTGTGTCTTTATTTGTGCGCATGTGTGGATAAAATATTTCAAAAGCATGTGGATGGTAGCTTAATAAATATTTCACAAGCATGTGAAAGAAAAACATAGAGAACCGCATAGAGAAAAACAATACATGTGGATATCTGTAAATTTATATAAATAAATACCACAAACTTCACTAAGGGTGTGTTTGGATGGAAGGTTTAGGAGTGGAAGGGAGATGAGGGTTTAGTTTTCATTTTTAAATTACGGACAATGTTAAATGTTTTTTAAAAAGTTAACATATTAACATAATAAACGAACATATAATACTGCAATCACACTTGATTTATTTTAGAAAAACATGTTATATAGTCCGTAATTTTAAAAAGAAAAGTAAACCCTCCTCTCCCTGCCCCTCCTAAACCCTCAATCCAAGCACACCCTAAATGTCTCTCTAGCGTATATCCACATTGAGAACCGCTTCAAATATCATATTTATTCAACAAAACGAGTAACGGATGACTATTATATATGCATGTGGATACTCATAAATACTCAACCAATCCGTCACAAGTCATTATATTTCACTTACGATAATAGTGAATACATCAATATTTAAGAAGAATAATCTGGTAAAATTATTATCATTTTTCTTATCTATAATTTTTTTGAAACAAACAACTGTGATAGTTTCTTTCTTACTTTTAACATACATAATTTTCATAATTACCTTAATTTTTTAAAACCAGTGTTTAAGTGCTGCACGGAAAGCTGCTTTCACTATTGATGAGCAAGAACGTGAGAAAGCTATTGAGGAAACAGAAGAGACTTTTCAAATTCTTGAGAATGAGCTTAAGGATAATTTCTTTGGTGGAGAGGAGATTGGAATTGTTGATATTGCTGCAGTCTTCATAGCTTTTTGGTTCCCCATTGTACAAGAAGCAACAAACTTGAAGTTGTTCACTAGTGAGAAATTTCCCAAGCTTTACAAATGGAGTCAAGACTTCACCAACCATCCAGTTGTTAAGGATAAATTGCCTCCTAGAGAAGGACTTTTGGCTTACTTTAAAGCTCGTTATGAAAATCTTCTTGCTTCAAAATAG

Protein sequence

>MS.gene055147.t1

MASNQENVKLFGMMASPFVSRVEIALTLKGVEYKYELEKGGNLSDTLIKYNPVYKKVPVLVHNDKPISESLVILEYVDETWKQNPILPSDPYKRALARFWTKFIDDKCLSAARKAAFTIDEQEREKAIEETEETFQILENELKDNFFGGEEIGIVDIAAVFIAFWFPIVQEATNLKLFTSEKFPKLYKWSQDFTNHPVVKDKLPPREGLLAYFKARYENLLASK