Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055147.t1 | XP_003623196.1 | 94.6 | 224 | 12 | 0 | 1 | 224 | 1 | 224 | 1.90E-117 | 431.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055147.t1 | P32110 | 71.1 | 225 | 64 | 1 | 1 | 224 | 1 | 225 | 1.2e-88 | 327.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055147.t1 | G7L6H0 | 94.6 | 224 | 12 | 0 | 1 | 224 | 1 | 224 | 1.4e-117 | 431.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053094 | MS.gene055147 | 0.84093 | 6.46E-58 | -1.69E-46 |
MS.gene053963 | MS.gene055147 | 0.841826 | 3.75E-58 | -1.69E-46 |
MS.gene054892 | MS.gene055147 | 0.841761 | 3.90E-58 | -1.69E-46 |
MS.gene054893 | MS.gene055147 | 0.840947 | 6.40E-58 | -1.69E-46 |
MS.gene055147 | MS.gene055148 | 0.983083 | 8.75E-157 | -1.69E-46 |
MS.gene055147 | MS.gene055149 | 0.870298 | 1.62E-66 | -1.69E-46 |
MS.gene055147 | MS.gene055150 | 0.812398 | 4.33E-51 | -1.69E-46 |
MS.gene055147 | MS.gene055226 | 0.826738 | 2.30E-54 | -1.69E-46 |
MS.gene055147 | MS.gene056986 | 0.807577 | 4.72E-50 | -1.69E-46 |
MS.gene055147 | MS.gene058592 | 0.803625 | 3.19E-49 | -1.69E-46 |
MS.gene055147 | MS.gene05952 | 0.80091 | 1.15E-48 | -1.69E-46 |
MS.gene055147 | MS.gene060412 | 0.817969 | 2.50E-52 | -1.69E-46 |
MS.gene055147 | MS.gene062327 | 0.848347 | 6.49E-60 | -1.69E-46 |
MS.gene055147 | MS.gene063245 | 0.813305 | 2.74E-51 | -1.69E-46 |
MS.gene055147 | MS.gene063247 | 0.816536 | 5.26E-52 | -1.69E-46 |
MS.gene055147 | MS.gene064415 | 0.814122 | 1.81E-51 | -1.69E-46 |
MS.gene055147 | MS.gene064969 | 0.807815 | 4.20E-50 | -1.69E-46 |
MS.gene055147 | MS.gene065460 | 0.836007 | 1.20E-56 | -1.69E-46 |
MS.gene055147 | MS.gene065886 | 0.868747 | 5.19E-66 | -1.69E-46 |
MS.gene055147 | MS.gene066272 | 0.802078 | 6.65E-49 | -1.69E-46 |
MS.gene055147 | MS.gene066513 | 0.835996 | 1.21E-56 | -1.69E-46 |
MS.gene055147 | MS.gene070275 | 0.813397 | 2.61E-51 | -1.69E-46 |
MS.gene055147 | MS.gene072273 | 0.817901 | 2.59E-52 | -1.69E-46 |
MS.gene055147 | MS.gene073428 | 0.825531 | 4.46E-54 | -1.69E-46 |
MS.gene055147 | MS.gene074100 | 0.825348 | 4.92E-54 | -1.69E-46 |
MS.gene055147 | MS.gene08120 | 0.81368 | 2.26E-51 | -1.69E-46 |
MS.gene055147 | MS.gene20481 | 0.824325 | 8.58E-54 | -1.69E-46 |
MS.gene055147 | MS.gene20608 | 0.820361 | 7.14E-53 | -1.69E-46 |
MS.gene055147 | MS.gene23909 | 0.806649 | 7.43E-50 | -1.69E-46 |
MS.gene055147 | MS.gene24356 | 0.80595 | 1.04E-49 | -1.69E-46 |
MS.gene055147 | MS.gene25688 | 0.804989 | 1.66E-49 | -1.69E-46 |
MS.gene055147 | MS.gene29036 | 0.824819 | 6.56E-54 | -1.69E-46 |
MS.gene055147 | MS.gene29096 | 0.818956 | 1.50E-52 | -1.69E-46 |
MS.gene055147 | MS.gene29969 | 0.847316 | 1.25E-59 | -1.69E-46 |
MS.gene055147 | MS.gene30878 | 0.840176 | 1.02E-57 | -1.69E-46 |
MS.gene055147 | MS.gene32409 | 0.821643 | 3.62E-53 | -1.69E-46 |
MS.gene055147 | MS.gene32411 | 0.832572 | 8.76E-56 | -1.69E-46 |
MS.gene055147 | MS.gene32801 | 0.83217 | 1.10E-55 | -1.69E-46 |
MS.gene055147 | MS.gene34340 | 0.84848 | 5.97E-60 | -1.69E-46 |
MS.gene055147 | MS.gene34444 | 0.827245 | 1.74E-54 | -1.69E-46 |
MS.gene055147 | MS.gene36100 | 0.801247 | 9.85E-49 | -1.69E-46 |
MS.gene055147 | MS.gene36870 | 0.805309 | 1.42E-49 | -1.69E-46 |
MS.gene055147 | MS.gene36977 | 0.839376 | 1.64E-57 | -1.69E-46 |
MS.gene055147 | MS.gene36981 | 0.80097 | 1.12E-48 | -1.69E-46 |
MS.gene055147 | MS.gene37412 | 0.852194 | 5.42E-61 | -1.69E-46 |
MS.gene055147 | MS.gene39037 | 0.821636 | 3.63E-53 | -1.69E-46 |
MS.gene055147 | MS.gene39295 | 0.848663 | 5.31E-60 | -1.69E-46 |
MS.gene055147 | MS.gene40366 | 0.80259 | 5.22E-49 | -1.69E-46 |
MS.gene055147 | MS.gene43381 | 0.837418 | 5.26E-57 | -1.69E-46 |
MS.gene055147 | MS.gene43585 | 0.800154 | 1.65E-48 | -1.69E-46 |
MS.gene055147 | MS.gene44909 | 0.852579 | 4.21E-61 | -1.69E-46 |
MS.gene055147 | MS.gene45290 | 0.807096 | 5.97E-50 | -1.69E-46 |
MS.gene055147 | MS.gene46053 | 0.856498 | 3.09E-62 | -1.69E-46 |
MS.gene055147 | MS.gene46054 | 0.933942 | 8.68E-96 | -1.69E-46 |
MS.gene055147 | MS.gene46055 | 0.810711 | 1.01E-50 | -1.69E-46 |
MS.gene055147 | MS.gene47195 | 0.818475 | 1.92E-52 | -1.69E-46 |
MS.gene055147 | MS.gene48566 | 0.804489 | 2.11E-49 | -1.69E-46 |
MS.gene055147 | MS.gene53855 | 0.835811 | 1.35E-56 | -1.69E-46 |
MS.gene055147 | MS.gene54377 | 0.827098 | 1.89E-54 | -1.69E-46 |
MS.gene055147 | MS.gene54380 | 0.827826 | 1.26E-54 | -1.69E-46 |
MS.gene055147 | MS.gene57028 | 0.828932 | 6.83E-55 | -1.69E-46 |
MS.gene055147 | MS.gene57128 | 0.834499 | 2.89E-56 | -1.69E-46 |
MS.gene055147 | MS.gene58440 | -0.806978 | 6.33E-50 | -1.69E-46 |
MS.gene055147 | MS.gene58441 | -0.803043 | 4.21E-49 | -1.69E-46 |
MS.gene055147 | MS.gene58467 | 0.819276 | 1.26E-52 | -1.69E-46 |
MS.gene055147 | MS.gene58653 | 0.813978 | 1.95E-51 | -1.69E-46 |
MS.gene055147 | MS.gene59030 | 0.802835 | 4.65E-49 | -1.69E-46 |
MS.gene055147 | MS.gene59184 | 0.823151 | 1.62E-53 | -1.69E-46 |
MS.gene055147 | MS.gene60313 | 0.801362 | 9.33E-49 | -1.69E-46 |
MS.gene055147 | MS.gene60871 | 0.814261 | 1.69E-51 | -1.69E-46 |
MS.gene055147 | MS.gene61064 | 0.826883 | 2.12E-54 | -1.69E-46 |
MS.gene055147 | MS.gene62676 | 0.842947 | 1.89E-58 | -1.69E-46 |
MS.gene055147 | MS.gene62677 | 0.849588 | 2.94E-60 | -1.69E-46 |
MS.gene055147 | MS.gene64284 | 0.806816 | 6.84E-50 | -1.69E-46 |
MS.gene055147 | MS.gene65244 | 0.848248 | 6.92E-60 | -1.69E-46 |
MS.gene055147 | MS.gene65444 | 0.813761 | 2.17E-51 | -1.69E-46 |
MS.gene055147 | MS.gene67301 | -0.801332 | 9.46E-49 | -1.69E-46 |
MS.gene055147 | MS.gene68086 | 0.831888 | 1.29E-55 | -1.69E-46 |
MS.gene055147 | MS.gene68298 | 0.802746 | 4.85E-49 | -1.69E-46 |
MS.gene055147 | MS.gene69691 | 0.832923 | 7.16E-56 | -1.69E-46 |
MS.gene055147 | MS.gene69692 | 0.814473 | 1.51E-51 | -1.69E-46 |
MS.gene055147 | MS.gene70154 | 0.805545 | 1.27E-49 | -1.69E-46 |
MS.gene055147 | MS.gene70742 | 0.847768 | 9.38E-60 | -1.69E-46 |
MS.gene055147 | MS.gene71568 | 0.818308 | 2.10E-52 | -1.69E-46 |
MS.gene055147 | MS.gene72748 | 0.803722 | 3.04E-49 | -1.69E-46 |
MS.gene055147 | MS.gene73236 | 0.808695 | 2.73E-50 | -1.69E-46 |
MS.gene055147 | MS.gene73557 | 0.800541 | 1.37E-48 | -1.69E-46 |
MS.gene055147 | MS.gene74530 | 0.820331 | 7.26E-53 | -1.69E-46 |
MS.gene055147 | MS.gene75343 | 0.805369 | 1.38E-49 | -1.69E-46 |
MS.gene055147 | MS.gene78773 | 0.822245 | 2.63E-53 | -1.69E-46 |
MS.gene055147 | MS.gene80821 | 0.821155 | 4.69E-53 | -1.69E-46 |
MS.gene055147 | MS.gene81272 | 0.813571 | 2.39E-51 | -1.69E-46 |
MS.gene055147 | MS.gene82269 | 0.817919 | 2.57E-52 | -1.69E-46 |
MS.gene055147 | MS.gene83022 | 0.841349 | 5.01E-58 | -1.69E-46 |
MS.gene055147 | MS.gene83687 | 0.812932 | 3.31E-51 | -1.69E-46 |
MS.gene055147 | MS.gene83853 | 0.82924 | 5.75E-55 | -1.69E-46 |
MS.gene055147 | MS.gene84165 | 0.807915 | 4.00E-50 | -1.69E-46 |
MS.gene055147 | MS.gene85979 | 0.81314 | 2.98E-51 | -1.69E-46 |
MS.gene055147 | MS.gene88351 | 0.851799 | 7.01E-61 | -1.69E-46 |
MS.gene055147 | MS.gene89254 | 0.967799 | 8.89E-128 | -1.69E-46 |
MS.gene055147 | MS.gene89255 | 0.864603 | 1.08E-64 | -1.69E-46 |
MS.gene055147 | MS.gene89256 | 0.814984 | 1.17E-51 | -1.69E-46 |
MS.gene055147 | MS.gene92336 | 0.812186 | 4.81E-51 | -1.69E-46 |
MS.gene055147 | MS.gene93602 | 0.830403 | 3.00E-55 | -1.69E-46 |
MS.gene055147 | MS.gene94111 | 0.818513 | 1.88E-52 | -1.69E-46 |
MS.gene055147 | MS.gene94266 | 0.814956 | 1.18E-51 | -1.69E-46 |
MS.gene055147 | MS.gene94267 | 0.822269 | 2.59E-53 | -1.69E-46 |
MS.gene055147 | MS.gene94268 | 0.948652 | 6.17E-107 | -1.69E-46 |
MS.gene055147 | MS.gene95332 | 0.83464 | 2.67E-56 | -1.69E-46 |
MS.gene055147 | MS.gene95936 | 0.805952 | 1.04E-49 | -1.69E-46 |
MS.gene055147 | MS.gene96973 | 0.819449 | 1.15E-52 | -1.69E-46 |
MS.gene055147 | MS.gene97447 | 0.804572 | 2.03E-49 | -1.69E-46 |
MS.gene055147 | MS.gene97613 | 0.811012 | 8.66E-51 | -1.69E-46 |
MS.gene055147 | MS.gene99534 | 0.833175 | 6.20E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055147.t1 | MTR_7g065600 | 94.643 | 224 | 12 | 0 | 1 | 224 | 1 | 224 | 1.30e-158 | 438 |
MS.gene055147.t1 | MTR_7g065590 | 79.911 | 224 | 45 | 0 | 1 | 224 | 1 | 224 | 4.60e-135 | 378 |
MS.gene055147.t1 | MTR_7g065290 | 77.232 | 224 | 51 | 0 | 1 | 224 | 1 | 224 | 6.51e-130 | 365 |
MS.gene055147.t1 | MTR_7g065265 | 74.554 | 224 | 57 | 0 | 1 | 224 | 1 | 224 | 4.93e-124 | 350 |
MS.gene055147.t1 | MTR_7g065230 | 75.893 | 224 | 49 | 1 | 1 | 224 | 1 | 219 | 4.17e-123 | 348 |
MS.gene055147.t1 | MTR_7g065270 | 73.214 | 224 | 60 | 0 | 1 | 224 | 1 | 224 | 9.18e-122 | 345 |
MS.gene055147.t1 | MTR_7g065260 | 76.444 | 225 | 52 | 1 | 1 | 224 | 8 | 232 | 4.63e-116 | 330 |
MS.gene055147.t1 | MTR_7g065720 | 68.889 | 225 | 69 | 1 | 1 | 224 | 1 | 225 | 2.63e-114 | 326 |
MS.gene055147.t1 | MTR_7g065660 | 67.265 | 223 | 73 | 0 | 1 | 223 | 1 | 223 | 1.65e-112 | 321 |
MS.gene055147.t1 | MTR_7g065740 | 62.946 | 224 | 82 | 1 | 1 | 223 | 1 | 224 | 7.46e-107 | 307 |
MS.gene055147.t1 | MTR_7g065630 | 66.368 | 223 | 71 | 1 | 1 | 223 | 19 | 237 | 8.59e-107 | 307 |
MS.gene055147.t1 | MTR_7g065750 | 63.839 | 224 | 80 | 1 | 1 | 223 | 1 | 224 | 2.39e-104 | 301 |
MS.gene055147.t1 | MTR_4g019790 | 60.987 | 223 | 87 | 0 | 1 | 223 | 1 | 223 | 1.55e-102 | 296 |
MS.gene055147.t1 | MTR_7g065640 | 61.435 | 223 | 68 | 1 | 1 | 223 | 1 | 205 | 9.07e-99 | 286 |
MS.gene055147.t1 | MTR_7g065710 | 64.734 | 207 | 69 | 1 | 8 | 214 | 5 | 207 | 4.95e-96 | 280 |
MS.gene055147.t1 | MTR_4g019780 | 62.150 | 214 | 79 | 2 | 3 | 215 | 4 | 216 | 8.81e-94 | 274 |
MS.gene055147.t1 | MTR_7g065680 | 65.315 | 222 | 73 | 1 | 1 | 222 | 1 | 218 | 2.56e-92 | 270 |
MS.gene055147.t1 | MTR_7g065700 | 64.019 | 214 | 73 | 1 | 1 | 214 | 1 | 210 | 9.50e-88 | 259 |
MS.gene055147.t1 | MTR_1g090150 | 45.249 | 221 | 116 | 2 | 5 | 222 | 1 | 219 | 2.59e-65 | 202 |
MS.gene055147.t1 | MTR_6g080440 | 47.826 | 207 | 106 | 2 | 8 | 213 | 4 | 209 | 7.77e-64 | 198 |
MS.gene055147.t1 | MTR_8g087425 | 47.222 | 216 | 112 | 2 | 4 | 218 | 2 | 216 | 2.57e-63 | 196 |
MS.gene055147.t1 | MTR_3g099757 | 48.636 | 220 | 111 | 2 | 5 | 223 | 3 | 221 | 2.85e-62 | 194 |
MS.gene055147.t1 | MTR_8g087410 | 45.161 | 217 | 116 | 3 | 1 | 216 | 1 | 215 | 1.86e-58 | 184 |
MS.gene055147.t1 | MTR_1g115195 | 45.070 | 213 | 114 | 2 | 7 | 216 | 3 | 215 | 2.96e-58 | 183 |
MS.gene055147.t1 | MTR_5g040430 | 41.892 | 222 | 121 | 3 | 1 | 215 | 1 | 221 | 7.32e-58 | 182 |
MS.gene055147.t1 | MTR_1g090070 | 42.273 | 220 | 122 | 3 | 8 | 223 | 10 | 228 | 3.43e-56 | 179 |
MS.gene055147.t1 | MTR_1g090100 | 42.986 | 221 | 120 | 4 | 7 | 223 | 2 | 220 | 3.42e-54 | 173 |
MS.gene055147.t1 | MTR_5g037380 | 43.182 | 220 | 115 | 3 | 1 | 212 | 1 | 218 | 6.16e-54 | 172 |
MS.gene055147.t1 | MTR_1g090060 | 42.081 | 221 | 122 | 4 | 8 | 224 | 4 | 222 | 2.47e-53 | 171 |
MS.gene055147.t1 | MTR_8g061950 | 42.922 | 219 | 117 | 3 | 5 | 215 | 3 | 221 | 2.09e-51 | 166 |
MS.gene055147.t1 | MTR_4g059730 | 39.906 | 213 | 124 | 2 | 6 | 215 | 3 | 214 | 2.50e-51 | 166 |
MS.gene055147.t1 | MTR_1g090090 | 41.176 | 221 | 119 | 5 | 8 | 224 | 4 | 217 | 3.30e-50 | 163 |
MS.gene055147.t1 | MTR_2g070200 | 40.196 | 204 | 118 | 3 | 6 | 207 | 3 | 204 | 4.89e-44 | 147 |
MS.gene055147.t1 | MTR_3g467420 | 42.000 | 200 | 111 | 4 | 7 | 204 | 9 | 205 | 1.61e-42 | 143 |
MS.gene055147.t1 | MTR_2g070150 | 38.235 | 204 | 121 | 4 | 6 | 207 | 3 | 203 | 1.99e-42 | 142 |
MS.gene055147.t1 | MTR_2g070130 | 37.864 | 206 | 123 | 4 | 6 | 209 | 3 | 205 | 4.05e-41 | 139 |
MS.gene055147.t1 | MTR_2g070180 | 37.745 | 204 | 122 | 4 | 6 | 207 | 3 | 203 | 6.65e-41 | 139 |
MS.gene055147.t1 | MTR_2g070140 | 37.629 | 194 | 116 | 4 | 21 | 212 | 2 | 192 | 5.99e-40 | 136 |
MS.gene055147.t1 | MTR_4g124130 | 43.229 | 192 | 99 | 6 | 5 | 191 | 2 | 188 | 7.56e-40 | 136 |
MS.gene055147.t1 | MTR_3g467430 | 39.901 | 203 | 117 | 4 | 4 | 204 | 6 | 205 | 6.24e-39 | 134 |
MS.gene055147.t1 | MTR_2g070210 | 37.915 | 211 | 124 | 5 | 6 | 212 | 3 | 210 | 2.16e-38 | 132 |
MS.gene055147.t1 | MTR_5g076900 | 38.164 | 207 | 123 | 4 | 3 | 207 | 2 | 205 | 2.21e-38 | 132 |
MS.gene055147.t1 | MTR_8g056940 | 41.270 | 189 | 106 | 4 | 6 | 192 | 3 | 188 | 3.25e-38 | 132 |
MS.gene055147.t1 | MTR_2g070120 | 37.864 | 206 | 123 | 4 | 6 | 209 | 3 | 205 | 5.06e-38 | 132 |
MS.gene055147.t1 | MTR_2g070070 | 38.693 | 199 | 117 | 4 | 8 | 204 | 5 | 200 | 3.88e-36 | 127 |
MS.gene055147.t1 | MTR_2g070060 | 36.634 | 202 | 123 | 4 | 8 | 207 | 5 | 203 | 1.82e-35 | 125 |
MS.gene055147.t1 | MTR_2g070110 | 36.715 | 207 | 125 | 4 | 8 | 212 | 5 | 207 | 1.43e-30 | 112 |
MS.gene055147.t1 | MTR_0186s0030 | 45.385 | 130 | 69 | 2 | 16 | 144 | 13 | 141 | 3.41e-30 | 109 |
MS.gene055147.t1 | MTR_2g072120 | 44.615 | 65 | 35 | 1 | 51 | 114 | 2 | 66 | 3.56e-15 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055147.t1 | AT3G09270 | 50.446 | 224 | 107 | 4 | 3 | 223 | 2 | 224 | 5.02e-76 | 229 |
MS.gene055147.t1 | AT2G29420 | 48.402 | 219 | 111 | 2 | 3 | 220 | 5 | 222 | 2.60e-72 | 219 |
MS.gene055147.t1 | AT2G29490 | 47.847 | 209 | 106 | 3 | 1 | 207 | 1 | 208 | 3.69e-60 | 188 |
MS.gene055147.t1 | AT2G29450 | 43.498 | 223 | 124 | 2 | 3 | 223 | 2 | 224 | 5.99e-57 | 180 |
MS.gene055147.t1 | AT2G29460 | 43.694 | 222 | 122 | 3 | 1 | 220 | 1 | 221 | 1.34e-55 | 177 |
MS.gene055147.t1 | AT2G29480 | 44.498 | 209 | 113 | 3 | 1 | 207 | 1 | 208 | 2.11e-54 | 174 |
MS.gene055147.t1 | AT1G10370 | 43.439 | 221 | 116 | 3 | 1 | 214 | 1 | 219 | 4.27e-53 | 171 |
MS.gene055147.t1 | AT2G29440 | 41.778 | 225 | 127 | 4 | 1 | 223 | 1 | 223 | 7.85e-53 | 170 |
MS.gene055147.t1 | AT2G29470 | 43.810 | 210 | 114 | 4 | 1 | 207 | 1 | 209 | 1.29e-52 | 169 |
MS.gene055147.t1 | AT1G69930 | 39.189 | 222 | 129 | 2 | 2 | 217 | 7 | 228 | 1.50e-51 | 167 |
MS.gene055147.t1 | AT1G10360 | 41.262 | 206 | 114 | 2 | 6 | 204 | 4 | 209 | 3.11e-50 | 163 |
MS.gene055147.t1 | AT1G27130 | 40.000 | 225 | 126 | 4 | 1 | 217 | 1 | 224 | 2.90e-49 | 161 |
MS.gene055147.t1 | AT1G59700 | 44.037 | 218 | 114 | 3 | 5 | 214 | 4 | 221 | 5.13e-49 | 160 |
MS.gene055147.t1 | AT1G59670 | 43.269 | 208 | 110 | 3 | 5 | 204 | 4 | 211 | 8.93e-49 | 160 |
MS.gene055147.t1 | AT5G62480 | 39.367 | 221 | 123 | 4 | 5 | 215 | 6 | 225 | 2.08e-45 | 151 |
MS.gene055147.t1 | AT1G27140 | 38.767 | 227 | 129 | 4 | 1 | 218 | 1 | 226 | 7.08e-45 | 150 |
MS.gene055147.t1 | AT1G78320 | 40.865 | 208 | 118 | 4 | 5 | 210 | 2 | 206 | 2.99e-44 | 148 |
MS.gene055147.t1 | AT1G17170 | 40.826 | 218 | 121 | 5 | 6 | 220 | 3 | 215 | 3.67e-44 | 147 |
MS.gene055147.t1 | AT1G78370 | 40.488 | 205 | 117 | 4 | 10 | 212 | 7 | 208 | 1.50e-43 | 146 |
MS.gene055147.t1 | AT1G78380 | 41.063 | 207 | 117 | 4 | 8 | 212 | 5 | 208 | 1.67e-43 | 146 |
MS.gene055147.t1 | AT1G69920 | 37.445 | 227 | 132 | 4 | 1 | 217 | 26 | 252 | 1.35e-42 | 144 |
MS.gene055147.t1 | AT1G78340 | 41.148 | 209 | 118 | 4 | 6 | 212 | 3 | 208 | 1.49e-42 | 143 |
MS.gene055147.t1 | AT1G74590 | 34.361 | 227 | 142 | 3 | 1 | 221 | 1 | 226 | 5.67e-42 | 142 |
MS.gene055147.t1 | AT1G53680 | 38.571 | 210 | 124 | 4 | 1 | 207 | 1 | 208 | 9.61e-41 | 139 |
MS.gene055147.t1 | AT1G17180 | 37.799 | 209 | 125 | 4 | 6 | 212 | 3 | 208 | 2.29e-39 | 135 |
MS.gene055147.t1 | AT1G78360 | 39.904 | 208 | 119 | 5 | 8 | 212 | 5 | 209 | 1.55e-38 | 133 |
MS.gene055147.t1 | AT1G17190 | 38.785 | 214 | 124 | 5 | 1 | 212 | 1 | 209 | 1.92e-38 | 133 |
MS.gene055147.t1 | AT3G43800 | 35.749 | 207 | 124 | 6 | 4 | 204 | 2 | 205 | 1.58e-35 | 125 |
MS.gene055147.t1 | AT5G62480 | 31.364 | 220 | 116 | 4 | 5 | 215 | 6 | 199 | 7.99e-28 | 105 |
MS.gene055147.t1 | AT1G78320 | 33.816 | 207 | 107 | 4 | 5 | 210 | 2 | 179 | 1.37e-27 | 104 |
MS.gene055147.t1 | AT5G62480 | 31.364 | 220 | 115 | 4 | 5 | 215 | 6 | 198 | 1.91e-27 | 104 |
MS.gene055147.t1 | AT2G02380 | 28.837 | 215 | 134 | 6 | 5 | 207 | 9 | 216 | 1.19e-16 | 76.3 |
MS.gene055147.t1 | AT2G02390 | 29.358 | 218 | 133 | 7 | 3 | 207 | 4 | 213 | 3.07e-16 | 75.1 |
MS.gene055147.t1 | AT2G02390 | 28.444 | 225 | 133 | 8 | 3 | 207 | 4 | 220 | 7.64e-14 | 68.6 |
MS.gene055147.t1 | AT2G02390 | 40.206 | 97 | 54 | 2 | 3 | 96 | 4 | 99 | 2.46e-13 | 66.6 |
Find 46 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGAGCCTTGGCTCGTTTC+TGG | 0.120947 | 7.4:+39335417 | MS.gene055147:CDS |
GAGCTTAAGGATAATTTCTT+TGG | 0.282538 | 7.4:+39336466 | MS.gene055147:CDS |
TAAGGATCAGAAGGCAATAT+TGG | 0.299422 | 7.4:-39335392 | None:intergenic |
ACAGGAACCTTCTTATAAAC+AGG | 0.304362 | 7.4:-39335293 | None:intergenic |
GCCTCCTAGAGAAGGACTTT+TGG | 0.337294 | 7.4:+39336654 | MS.gene055147:CDS |
AATTCTTGAGAATGAGCTTA+AGG | 0.354197 | 7.4:+39336453 | MS.gene055147:CDS |
TTCTTTGGTGGAGAGGAGAT+TGG | 0.368042 | 7.4:+39336481 | MS.gene055147:CDS |
GGCAATTTATCCTTAACAAC+TGG | 0.375316 | 7.4:-39336634 | None:intergenic |
TTGACTCCATTTGTAAAGCT+TGG | 0.384299 | 7.4:-39336596 | None:intergenic |
CACCAACCATCCAGTTGTTA+AGG | 0.388600 | 7.4:+39336624 | MS.gene055147:CDS |
TGACTCCATTTGTAAAGCTT+GGG | 0.390868 | 7.4:-39336595 | None:intergenic |
CACTAAGATGGCATCAAATC+AGG | 0.391111 | 7.4:+39335133 | None:intergenic |
TTTGTTGCTTCTTGTACAAT+GGG | 0.408906 | 7.4:-39336544 | None:intergenic |
TACAAATATGAGTTAGAAAA+GGG | 0.419037 | 7.4:+39335236 | MS.gene055147:CDS |
GTTTGTTGCTTCTTGTACAA+TGG | 0.430175 | 7.4:-39336545 | None:intergenic |
ATCACAAGGGATTCTGATAT+AGG | 0.433145 | 7.4:-39335335 | None:intergenic |
GACCAAGTTCATAGATGATA+AGG | 0.434027 | 7.4:+39335439 | MS.gene055147:CDS |
ATACAAATATGAGTTAGAAA+AGG | 0.446746 | 7.4:+39335235 | MS.gene055147:CDS |
CTTAAGGATAATTTCTTTGG+TGG | 0.454634 | 7.4:+39336469 | MS.gene055147:CDS |
GGAGATTGCTCTAACATTGA+AGG | 0.460355 | 7.4:+39335205 | MS.gene055147:CDS |
ATACAACCCTGTTTATAAGA+AGG | 0.470144 | 7.4:+39335286 | MS.gene055147:CDS |
AATTTCCCAAGCTTTACAAA+TGG | 0.474830 | 7.4:+39336590 | MS.gene055147:CDS |
TACCTTATCATCTATGAACT+TGG | 0.479710 | 7.4:-39335441 | None:intergenic |
ATCCTTAACAACTGGATGGT+TGG | 0.488666 | 7.4:-39336626 | None:intergenic |
ATCTCCACCCTACTCACAAA+TGG | 0.497901 | 7.4:-39335188 | None:intergenic |
GGCAAGTCCATTTGTGAGTA+GGG | 0.523330 | 7.4:+39335181 | MS.gene055147:CDS |
GGATAATTTCTTTGGTGGAG+AGG | 0.526031 | 7.4:+39336474 | MS.gene055147:CDS |
GATAAATTGCCTCCTAGAGA+AGG | 0.547220 | 7.4:+39336646 | MS.gene055147:CDS |
TGATCCTTACAAAAGAGCCT+TGG | 0.548089 | 7.4:+39335406 | MS.gene055147:CDS |
TTGAGTATGTCGATGAGACC+TGG | 0.549849 | 7.4:+39335360 | MS.gene055147:CDS |
TAAGCCAAAAGTCCTTCTCT+AGG | 0.550201 | 7.4:-39336658 | None:intergenic |
AGAACGTGAGAAAGCTATTG+AGG | 0.557970 | 7.4:+39336411 | MS.gene055147:CDS |
ATTTATCCTTAACAACTGGA+TGG | 0.561475 | 7.4:-39336630 | None:intergenic |
AATATGAGTTAGAAAAGGGA+GGG | 0.564400 | 7.4:+39335240 | MS.gene055147:CDS |
AAATATGAGTTAGAAAAGGG+AGG | 0.578650 | 7.4:+39335239 | MS.gene055147:CDS |
CAGGAACCTTCTTATAAACA+GGG | 0.585709 | 7.4:-39335292 | None:intergenic |
GAGATTGCTCTAACATTGAA+GGG | 0.597295 | 7.4:+39335206 | MS.gene055147:CDS |
CGACATACTCAAGAATCACA+AGG | 0.607291 | 7.4:-39335349 | None:intergenic |
TGGCAAGTCCATTTGTGAGT+AGG | 0.615908 | 7.4:+39335180 | MS.gene055147:CDS |
GCCAAAAGTCCTTCTCTAGG+AGG | 0.619286 | 7.4:-39336655 | None:intergenic |
ACCAGTGTTTAAGTGCTGCA+CGG | 0.628510 | 7.4:+39336362 | MS.gene055147:intron |
TTATCATTATGAACTAACAC+AGG | 0.667310 | 7.4:-39335311 | None:intergenic |
CTTGGTCCAGAAACGAGCCA+AGG | 0.682377 | 7.4:-39335423 | None:intergenic |
TTGTTGCTTCTTGTACAATG+GGG | 0.684989 | 7.4:-39336543 | None:intergenic |
AAGTCCATTTGTGAGTAGGG+TGG | 0.696953 | 7.4:+39335184 | MS.gene055147:CDS |
GACATACTCAAGAATCACAA+GGG | 0.702786 | 7.4:-39335348 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TACTTTTCTTTTTAAAATTA+CGG | - | chr7.4:39335994-39336013 | None:intergenic | 10.0% |
!!! | TAGTTTTCATTTTTAAATTA+CGG | + | chr7.4:39335865-39335884 | MS.gene055147:intron | 10.0% |
!! | AATAAATATGATATTTGAAG+CGG | - | chr7.4:39336098-39336117 | None:intergenic | 15.0% |
!! | AATATTTAAGAAGAATAATC+TGG | + | chr7.4:39336228-39336247 | MS.gene055147:intron | 15.0% |
!! | ATACAAATATGAGTTAGAAA+AGG | + | chr7.4:39335235-39335254 | MS.gene055147:CDS | 20.0% |
!! | TACAAATATGAGTTAGAAAA+GGG | + | chr7.4:39335236-39335255 | MS.gene055147:CDS | 20.0% |
!!! | ACACTGGTTTTAAAAAATTA+AGG | - | chr7.4:39336350-39336369 | None:intergenic | 20.0% |
!!! | ACTTTTAAAGTGTATAAATG+GGG | + | chr7.4:39335541-39335560 | MS.gene055147:intron | 20.0% |
!!! | CACTTTTAAAGTGTATAAAT+GGG | + | chr7.4:39335540-39335559 | MS.gene055147:intron | 20.0% |
!!! | TAAAATATTTCAAAAGCATG+TGG | + | chr7.4:39335674-39335693 | MS.gene055147:intron | 20.0% |
!!! | TCACTTTTAAAGTGTATAAA+TGG | + | chr7.4:39335539-39335558 | MS.gene055147:intron | 20.0% |
! | ATAGAGAAAAACAATACATG+TGG | + | chr7.4:39335752-39335771 | MS.gene055147:intron | 25.0% |
! | ATGACTATTATATATGCATG+TGG | + | chr7.4:39336136-39336155 | MS.gene055147:intron | 25.0% |
! | TGTATATTATATGCAGAGAT+CGG | - | chr7.4:39335584-39335603 | None:intergenic | 25.0% |
! | TTATCATTATGAACTAACAC+AGG | - | chr7.4:39335314-39335333 | None:intergenic | 25.0% |
! | TTATTCAACAAAACGAGTAA+CGG | + | chr7.4:39336113-39336132 | MS.gene055147:intron | 25.0% |
!! | TGAAATATAATGACTTGTGA+CGG | - | chr7.4:39336185-39336204 | None:intergenic | 25.0% |
!!! | ATGTATTGTTTTTCTCTATG+CGG | - | chr7.4:39335751-39335770 | None:intergenic | 25.0% |
AAATACCACAAACTTCACTA+AGG | + | chr7.4:39335797-39335816 | MS.gene055147:intron | 30.0% | |
AAATATGAGTTAGAAAAGGG+AGG | + | chr7.4:39335239-39335258 | MS.gene055147:CDS | 30.0% | |
AATACCACAAACTTCACTAA+GGG | + | chr7.4:39335798-39335817 | MS.gene055147:intron | 30.0% | |
AATATGAGTTAGAAAAGGGA+GGG | + | chr7.4:39335240-39335259 | MS.gene055147:CDS | 30.0% | |
AATTCTTGAGAATGAGCTTA+AGG | + | chr7.4:39336453-39336472 | MS.gene055147:CDS | 30.0% | |
AATTTCCCAAGCTTTACAAA+TGG | + | chr7.4:39336590-39336609 | MS.gene055147:CDS | 30.0% | |
ATACAACCCTGTTTATAAGA+AGG | + | chr7.4:39335286-39335305 | MS.gene055147:CDS | 30.0% | |
ATTTATCCTTAACAACTGGA+TGG | - | chr7.4:39336633-39336652 | None:intergenic | 30.0% | |
CTTAAGGATAATTTCTTTGG+TGG | + | chr7.4:39336469-39336488 | MS.gene055147:CDS | 30.0% | |
GAGCTTAAGGATAATTTCTT+TGG | + | chr7.4:39336466-39336485 | MS.gene055147:CDS | 30.0% | |
TACCTTATCATCTATGAACT+TGG | - | chr7.4:39335444-39335463 | None:intergenic | 30.0% | |
! | ATATTTCAAAAGCATGTGGA+TGG | + | chr7.4:39335678-39335697 | MS.gene055147:intron | 30.0% |
! | TTTGTTGCTTCTTGTACAAT+GGG | - | chr7.4:39336547-39336566 | None:intergenic | 30.0% |
!! | CAATATTGGATTTTGTTTCC+AGG | - | chr7.4:39335381-39335400 | None:intergenic | 30.0% |
ACAGGAACCTTCTTATAAAC+AGG | - | chr7.4:39335296-39335315 | None:intergenic | 35.0% | |
ATACGCTAGAGAGACATTTA+GGG | - | chr7.4:39336061-39336080 | None:intergenic | 35.0% | |
ATCACAAGGGATTCTGATAT+AGG | - | chr7.4:39335338-39335357 | None:intergenic | 35.0% | |
CAGGAACCTTCTTATAAACA+GGG | - | chr7.4:39335295-39335314 | None:intergenic | 35.0% | |
GAATTACGTTCATGTGATCT+CGG | - | chr7.4:39335625-39335644 | None:intergenic | 35.0% | |
GACATACTCAAGAATCACAA+GGG | - | chr7.4:39335351-39335370 | None:intergenic | 35.0% | |
GACCAAGTTCATAGATGATA+AGG | + | chr7.4:39335439-39335458 | MS.gene055147:CDS | 35.0% | |
GAGATTGCTCTAACATTGAA+GGG | + | chr7.4:39335206-39335225 | MS.gene055147:CDS | 35.0% | |
GGCAATTTATCCTTAACAAC+TGG | - | chr7.4:39336637-39336656 | None:intergenic | 35.0% | |
TAAGGATCAGAAGGCAATAT+TGG | - | chr7.4:39335395-39335414 | None:intergenic | 35.0% | |
TATACGCTAGAGAGACATTT+AGG | - | chr7.4:39336062-39336081 | None:intergenic | 35.0% | |
TGACTCCATTTGTAAAGCTT+GGG | - | chr7.4:39336598-39336617 | None:intergenic | 35.0% | |
TTGACTCCATTTGTAAAGCT+TGG | - | chr7.4:39336599-39336618 | None:intergenic | 35.0% | |
! | CAGGAAAATGTGAAGCTTTT+TGG | + | chr7.4:39335152-39335171 | MS.gene055147:CDS | 35.0% |
! | GTTTGTTGCTTCTTGTACAA+TGG | - | chr7.4:39336548-39336567 | None:intergenic | 35.0% |
! | TTGTTGCTTCTTGTACAATG+GGG | - | chr7.4:39336546-39336565 | None:intergenic | 35.0% |
!! | TATAATGACTTGTGACGGAT+TGG | - | chr7.4:39336180-39336199 | None:intergenic | 35.0% |
!!! | TGTGAAGCTTTTTGGAATGA+TGG | + | chr7.4:39335160-39335179 | MS.gene055147:CDS | 35.0% |
AGAACGTGAGAAAGCTATTG+AGG | + | chr7.4:39336411-39336430 | MS.gene055147:CDS | 40.0% | |
ATCCTTAACAACTGGATGGT+TGG | - | chr7.4:39336629-39336648 | None:intergenic | 40.0% | |
CGACATACTCAAGAATCACA+AGG | - | chr7.4:39335352-39335371 | None:intergenic | 40.0% | |
GATAAATTGCCTCCTAGAGA+AGG | + | chr7.4:39336646-39336665 | MS.gene055147:CDS | 40.0% | |
GGAGATTGCTCTAACATTGA+AGG | + | chr7.4:39335205-39335224 | MS.gene055147:CDS | 40.0% | |
GGATAATTTCTTTGGTGGAG+AGG | + | chr7.4:39336474-39336493 | MS.gene055147:CDS | 40.0% | |
TAAGCCAAAAGTCCTTCTCT+AGG | - | chr7.4:39336661-39336680 | None:intergenic | 40.0% | |
TGATCCTTACAAAAGAGCCT+TGG | + | chr7.4:39335406-39335425 | MS.gene055147:CDS | 40.0% | |
TGTGTTTGGATGGAAGGTTT+AGG | + | chr7.4:39335821-39335840 | MS.gene055147:intron | 40.0% | |
! | AACTTCACTAAGGGTGTGTT+TGG | + | chr7.4:39335807-39335826 | MS.gene055147:intron | 40.0% |
! | ATTTGAAGCGGTTCTCAATG+TGG | - | chr7.4:39336086-39336105 | None:intergenic | 40.0% |
! | CTGCAGTCTTCATAGCTTTT+TGG | + | chr7.4:39336518-39336537 | MS.gene055147:CDS | 40.0% |
! | GCTCTTTTGTAAGGATCAGA+AGG | - | chr7.4:39335404-39335423 | None:intergenic | 40.0% |
! | TCTTTATTTGTGCGCATGTG+TGG | + | chr7.4:39335650-39335669 | MS.gene055147:intron | 40.0% |
AAGTCCATTTGTGAGTAGGG+TGG | + | chr7.4:39335184-39335203 | MS.gene055147:CDS | 45.0% | |
ATCTCCACCCTACTCACAAA+TGG | - | chr7.4:39335191-39335210 | None:intergenic | 45.0% | |
ATGGAAGGTTTAGGAGTGGA+AGG | + | chr7.4:39335830-39335849 | MS.gene055147:intron | 45.0% | |
CACACCCTTAGTGAAGTTTG+TGG | - | chr7.4:39335805-39335824 | None:intergenic | 45.0% | |
CACCAACCATCCAGTTGTTA+AGG | + | chr7.4:39336624-39336643 | MS.gene055147:CDS | 45.0% | |
CTTGGATTGAGGGTTTAGGA+GGG | - | chr7.4:39336034-39336053 | None:intergenic | 45.0% | |
GGCAAGTCCATTTGTGAGTA+GGG | + | chr7.4:39335181-39335200 | MS.gene055147:CDS | 45.0% | |
TCATGTGATCTCGGTTCAGT+TGG | - | chr7.4:39335616-39335635 | None:intergenic | 45.0% | |
TGGAAGGTTTAGGAGTGGAA+GGG | + | chr7.4:39335831-39335850 | MS.gene055147:intron | 45.0% | |
TGGCAAGTCCATTTGTGAGT+AGG | + | chr7.4:39335180-39335199 | MS.gene055147:CDS | 45.0% | |
TGTGCTTGGATTGAGGGTTT+AGG | - | chr7.4:39336038-39336057 | None:intergenic | 45.0% | |
TTAGGGTGTGCTTGGATTGA+GGG | - | chr7.4:39336044-39336063 | None:intergenic | 45.0% | |
TTCTTTGGTGGAGAGGAGAT+TGG | + | chr7.4:39336481-39336500 | MS.gene055147:CDS | 45.0% | |
TTGAGTATGTCGATGAGACC+TGG | + | chr7.4:39335360-39335379 | MS.gene055147:CDS | 45.0% | |
TTGGATGGAAGGTTTAGGAG+TGG | + | chr7.4:39335826-39335845 | MS.gene055147:intron | 45.0% | |
TTGGATTGAGGGTTTAGGAG+GGG | - | chr7.4:39336033-39336052 | None:intergenic | 45.0% | |
! | ACCAGTGTTTAAGTGCTGCA+CGG | + | chr7.4:39336362-39336381 | MS.gene055147:intron | 45.0% |
! | AGAGACATTTAGGGTGTGCT+TGG | - | chr7.4:39336052-39336071 | None:intergenic | 45.0% |
! | TAAGGGTGTGTTTGGATGGA+AGG | + | chr7.4:39335815-39335834 | MS.gene055147:intron | 45.0% |
! | TCACTAAGGGTGTGTTTGGA+TGG | + | chr7.4:39335811-39335830 | MS.gene055147:intron | 45.0% |
! | TGATCTCGGTTCAGTTGGTA+GGG | - | chr7.4:39335611-39335630 | None:intergenic | 45.0% |
! | TTTAGGGTGTGCTTGGATTG+AGG | - | chr7.4:39336045-39336064 | None:intergenic | 45.0% |
GCCAAAAGTCCTTCTCTAGG+AGG | - | chr7.4:39336658-39336677 | None:intergenic | 50.0% | |
GCTTGGATTGAGGGTTTAGG+AGG | - | chr7.4:39336035-39336054 | None:intergenic | 50.0% | |
GTGATCTCGGTTCAGTTGGT+AGG | - | chr7.4:39335612-39335631 | None:intergenic | 50.0% | |
TAGGAGTGGAAGGGAGATGA+GGG | + | chr7.4:39335840-39335859 | MS.gene055147:intron | 50.0% | |
TCCGTGCAGCACTTAAACAC+TGG | - | chr7.4:39336366-39336385 | None:intergenic | 50.0% | |
TTAGGAGTGGAAGGGAGATG+AGG | + | chr7.4:39335839-39335858 | MS.gene055147:intron | 50.0% | |
! | AAAGAGCCTTGGCTCGTTTC+TGG | + | chr7.4:39335417-39335436 | MS.gene055147:CDS | 50.0% |
! | CGAGCCAAGGCTCTTTTGTA+AGG | - | chr7.4:39335413-39335432 | None:intergenic | 50.0% |
! | GCCTCCTAGAGAAGGACTTT+TGG | + | chr7.4:39336654-39336673 | MS.gene055147:CDS | 50.0% |
ATTGAGGGTTTAGGAGGGGC+AGG | - | chr7.4:39336029-39336048 | None:intergenic | 55.0% | |
CTTGGTCCAGAAACGAGCCA+AGG | - | chr7.4:39335426-39335445 | None:intergenic | 55.0% | |
TTGAGGGTTTAGGAGGGGCA+GGG | - | chr7.4:39336028-39336047 | None:intergenic | 55.0% | |
GGTTTAGGAGGGGCAGGGAG+AGG | - | chr7.4:39336023-39336042 | None:intergenic | 65.0% | |
TAGGAGGGGCAGGGAGAGGA+GGG | - | chr7.4:39336019-39336038 | None:intergenic | 65.0% | |
TTAGGAGGGGCAGGGAGAGG+AGG | - | chr7.4:39336020-39336039 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 39335140 | 39336720 | 39335140 | ID=MS.gene055147 |
chr7.4 | mRNA | 39335140 | 39336720 | 39335140 | ID=MS.gene055147.t1;Parent=MS.gene055147 |
chr7.4 | exon | 39335140 | 39335460 | 39335140 | ID=MS.gene055147.t1.exon1;Parent=MS.gene055147.t1 |
chr7.4 | CDS | 39335140 | 39335460 | 39335140 | ID=cds.MS.gene055147.t1;Parent=MS.gene055147.t1 |
chr7.4 | exon | 39336367 | 39336720 | 39336367 | ID=MS.gene055147.t1.exon2;Parent=MS.gene055147.t1 |
chr7.4 | CDS | 39336367 | 39336720 | 39336367 | ID=cds.MS.gene055147.t1;Parent=MS.gene055147.t1 |
Gene Sequence |
Protein sequence |