Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48634.t1 | ABD83946.1 | 93.5 | 263 | 17 | 0 | 1 | 263 | 1 | 263 | 5.40E-138 | 500.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48634.t1 | Q84KK6 | 77.5 | 267 | 56 | 2 | 1 | 263 | 1 | 267 | 2.0e-117 | 423.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48634.t1 | Q06YR0 | 93.5 | 263 | 17 | 0 | 1 | 263 | 1 | 263 | 3.9e-138 | 500.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060791 | MS.gene48634 | 0.927161 | 1.73E-91 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48634.t1 | MTR_4g033015 | 93.536 | 263 | 17 | 0 | 1 | 263 | 1 | 263 | 0.0 | 506 |
MS.gene48634.t1 | MTR_4g033200 | 93.156 | 263 | 18 | 0 | 1 | 263 | 1 | 263 | 0.0 | 506 |
MS.gene48634.t1 | MTR_4g033150 | 89.354 | 263 | 28 | 0 | 1 | 263 | 1 | 263 | 9.35e-177 | 491 |
MS.gene48634.t1 | MTR_0794s0020 | 89.558 | 249 | 26 | 0 | 1 | 249 | 1 | 249 | 7.90e-169 | 467 |
MS.gene48634.t1 | MTR_4g033085 | 75.665 | 263 | 58 | 1 | 1 | 263 | 1 | 257 | 2.19e-148 | 419 |
MS.gene48634.t1 | MTR_4g033170 | 75.665 | 263 | 58 | 1 | 1 | 263 | 1 | 257 | 2.98e-148 | 419 |
MS.gene48634.t1 | MTR_4g088200 | 72.243 | 263 | 71 | 1 | 1 | 263 | 1 | 261 | 4.07e-140 | 398 |
MS.gene48634.t1 | MTR_4g088190 | 74.621 | 264 | 66 | 1 | 1 | 263 | 1 | 264 | 1.27e-132 | 379 |
MS.gene48634.t1 | MTR_7g014570 | 50.951 | 263 | 119 | 3 | 6 | 268 | 6 | 258 | 1.06e-86 | 262 |
MS.gene48634.t1 | MTR_7g014510 | 47.308 | 260 | 132 | 3 | 6 | 265 | 6 | 260 | 4.57e-81 | 248 |
MS.gene48634.t1 | MTR_5g074680 | 47.638 | 254 | 126 | 4 | 11 | 263 | 12 | 259 | 1.91e-77 | 239 |
MS.gene48634.t1 | MTR_5g074600 | 44.488 | 254 | 134 | 4 | 11 | 263 | 11 | 258 | 4.84e-74 | 230 |
MS.gene48634.t1 | MTR_7g024500 | 45.349 | 258 | 129 | 4 | 6 | 263 | 5 | 250 | 1.13e-73 | 229 |
MS.gene48634.t1 | MTR_5g074580 | 45.669 | 254 | 131 | 4 | 11 | 263 | 12 | 259 | 3.31e-73 | 228 |
MS.gene48634.t1 | MTR_1g076940 | 45.594 | 261 | 135 | 5 | 6 | 263 | 6 | 262 | 5.19e-73 | 228 |
MS.gene48634.t1 | MTR_4g088345 | 48.819 | 254 | 121 | 4 | 11 | 263 | 11 | 256 | 2.46e-72 | 226 |
MS.gene48634.t1 | MTR_7g024520 | 44.186 | 258 | 132 | 4 | 6 | 263 | 5 | 250 | 1.68e-68 | 216 |
MS.gene48634.t1 | MTR_4g079160 | 43.701 | 254 | 134 | 3 | 11 | 263 | 10 | 255 | 1.98e-68 | 216 |
MS.gene48634.t1 | MTR_5g074610 | 45.059 | 253 | 106 | 3 | 11 | 263 | 7 | 226 | 8.96e-68 | 213 |
MS.gene48634.t1 | MTR_5g074540 | 41.339 | 254 | 124 | 5 | 11 | 263 | 11 | 240 | 6.62e-65 | 206 |
MS.gene48634.t1 | MTR_4g088340 | 46.473 | 241 | 120 | 4 | 24 | 263 | 1 | 233 | 4.56e-63 | 201 |
MS.gene48634.t1 | MTR_1g076930 | 44.898 | 245 | 124 | 6 | 24 | 264 | 1 | 238 | 6.47e-62 | 195 |
MS.gene48634.t1 | MTR_4g038440 | 33.585 | 265 | 166 | 5 | 3 | 264 | 14 | 271 | 5.87e-38 | 134 |
MS.gene48634.t1 | MTR_3g083620 | 35.102 | 245 | 148 | 6 | 20 | 263 | 27 | 261 | 3.09e-36 | 132 |
MS.gene48634.t1 | MTR_4g038440 | 33.333 | 264 | 166 | 5 | 3 | 263 | 14 | 270 | 3.41e-36 | 132 |
MS.gene48634.t1 | MTR_0017s0100 | 32.955 | 264 | 167 | 5 | 3 | 263 | 14 | 270 | 2.10e-35 | 130 |
MS.gene48634.t1 | MTR_0079s0070 | 33.610 | 241 | 150 | 5 | 26 | 263 | 3 | 236 | 5.09e-32 | 120 |
MS.gene48634.t1 | MTR_7g012020 | 32.773 | 238 | 151 | 6 | 32 | 264 | 39 | 272 | 2.86e-30 | 115 |
MS.gene48634.t1 | MTR_7g012020 | 32.645 | 242 | 154 | 6 | 32 | 268 | 39 | 276 | 5.35e-30 | 116 |
MS.gene48634.t1 | MTR_7g012090 | 30.769 | 247 | 157 | 6 | 32 | 268 | 40 | 282 | 1.29e-29 | 115 |
MS.gene48634.t1 | MTR_7g011900 | 31.405 | 242 | 157 | 6 | 32 | 268 | 40 | 277 | 7.49e-28 | 110 |
MS.gene48634.t1 | MTR_7g011990 | 31.174 | 247 | 148 | 7 | 32 | 268 | 40 | 274 | 9.66e-28 | 110 |
MS.gene48634.t1 | MTR_7g012070 | 30.364 | 247 | 158 | 7 | 32 | 268 | 40 | 282 | 9.85e-28 | 110 |
MS.gene48634.t1 | MTR_7g012040 | 30.290 | 241 | 160 | 6 | 32 | 268 | 39 | 275 | 1.11e-26 | 107 |
MS.gene48634.t1 | MTR_1g036460 | 29.482 | 251 | 166 | 6 | 25 | 268 | 30 | 276 | 7.98e-26 | 104 |
MS.gene48634.t1 | MTR_1g096310 | 29.478 | 268 | 174 | 7 | 8 | 268 | 20 | 279 | 1.40e-25 | 104 |
MS.gene48634.t1 | MTR_8g068870 | 30.952 | 252 | 163 | 7 | 18 | 263 | 19 | 265 | 1.71e-24 | 100 |
MS.gene48634.t1 | MTR_1g036490 | 30.556 | 252 | 162 | 8 | 25 | 268 | 30 | 276 | 4.80e-24 | 99.8 |
MS.gene48634.t1 | MTR_5g098170 | 33.884 | 242 | 142 | 11 | 31 | 263 | 33 | 265 | 4.48e-23 | 97.1 |
MS.gene48634.t1 | MTR_2g072790 | 32.353 | 238 | 147 | 6 | 31 | 263 | 27 | 255 | 6.13e-23 | 96.7 |
MS.gene48634.t1 | MTR_2g055940 | 29.046 | 241 | 163 | 6 | 32 | 268 | 34 | 270 | 1.69e-22 | 95.5 |
MS.gene48634.t1 | MTR_3g096050 | 31.855 | 248 | 152 | 9 | 23 | 264 | 24 | 260 | 1.99e-21 | 90.9 |
MS.gene48634.t1 | MTR_0591s0010 | 30.041 | 243 | 161 | 6 | 26 | 263 | 41 | 279 | 2.72e-21 | 92.4 |
MS.gene48634.t1 | MTR_1g036510 | 29.150 | 247 | 164 | 6 | 25 | 264 | 44 | 286 | 4.18e-21 | 90.9 |
MS.gene48634.t1 | MTR_1g036510 | 28.000 | 250 | 171 | 4 | 25 | 268 | 44 | 290 | 1.32e-20 | 90.5 |
MS.gene48634.t1 | MTR_7g012020 | 31.429 | 210 | 135 | 6 | 32 | 236 | 39 | 244 | 2.26e-20 | 87.8 |
MS.gene48634.t1 | MTR_3g096050 | 31.579 | 247 | 152 | 9 | 23 | 263 | 24 | 259 | 2.62e-20 | 89.4 |
MS.gene48634.t1 | MTR_8g068690 | 28.980 | 245 | 165 | 6 | 26 | 265 | 40 | 280 | 2.65e-20 | 88.2 |
MS.gene48634.t1 | MTR_3g092900 | 30.712 | 267 | 155 | 9 | 9 | 263 | 17 | 265 | 3.55e-20 | 89.0 |
MS.gene48634.t1 | MTR_7g118320 | 29.918 | 244 | 160 | 8 | 26 | 263 | 26 | 264 | 4.60e-20 | 88.6 |
MS.gene48634.t1 | MTR_8g068750 | 29.630 | 243 | 162 | 6 | 26 | 263 | 41 | 279 | 5.30e-20 | 88.6 |
MS.gene48634.t1 | MTR_8g068690 | 28.807 | 243 | 164 | 6 | 26 | 263 | 40 | 278 | 1.42e-19 | 87.4 |
MS.gene48634.t1 | MTR_8g068600 | 29.437 | 231 | 154 | 6 | 38 | 263 | 27 | 253 | 2.47e-19 | 85.5 |
MS.gene48634.t1 | MTR_3g021440 | 28.980 | 245 | 166 | 6 | 28 | 268 | 38 | 278 | 2.07e-18 | 84.3 |
MS.gene48634.t1 | MTR_7g118300 | 28.049 | 246 | 159 | 6 | 26 | 263 | 42 | 277 | 1.39e-17 | 82.0 |
MS.gene48634.t1 | MTR_8g068570 | 28.395 | 243 | 138 | 7 | 26 | 263 | 41 | 252 | 1.48e-16 | 78.6 |
MS.gene48634.t1 | MTR_3g096070 | 29.268 | 246 | 136 | 10 | 23 | 263 | 24 | 236 | 5.41e-16 | 77.0 |
MS.gene48634.t1 | MTR_8g068620 | 36.937 | 111 | 68 | 1 | 153 | 263 | 2 | 110 | 6.58e-16 | 72.4 |
MS.gene48634.t1 | MTR_3g021430 | 27.311 | 238 | 165 | 6 | 32 | 265 | 29 | 262 | 9.20e-16 | 76.6 |
MS.gene48634.t1 | MTR_4g025570 | 41.748 | 103 | 50 | 4 | 6 | 108 | 16 | 108 | 1.21e-14 | 71.6 |
MS.gene48634.t1 | MTR_8g024160 | 31.138 | 167 | 110 | 3 | 98 | 263 | 68 | 230 | 3.15e-14 | 72.0 |
MS.gene48634.t1 | MTR_1g036510 | 27.397 | 219 | 148 | 6 | 25 | 236 | 44 | 258 | 3.43e-13 | 68.2 |
MS.gene48634.t1 | MTR_6g078850 | 25.573 | 262 | 179 | 7 | 9 | 263 | 33 | 285 | 4.04e-13 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48634.t1 | AT4G35160 | 31.783 | 258 | 155 | 8 | 16 | 263 | 29 | 275 | 3.49e-24 | 100 |
MS.gene48634.t1 | AT5G54160 | 32.922 | 243 | 140 | 7 | 31 | 263 | 34 | 263 | 3.60e-24 | 100 |
MS.gene48634.t1 | AT4G35150 | 28.287 | 251 | 130 | 7 | 16 | 263 | 15 | 218 | 4.82e-24 | 99.4 |
MS.gene48634.t1 | AT3G53140 | 33.469 | 245 | 140 | 10 | 31 | 263 | 27 | 260 | 2.02e-23 | 98.2 |
MS.gene48634.t1 | AT1G77520 | 30.041 | 243 | 156 | 6 | 31 | 263 | 44 | 282 | 2.90e-22 | 95.1 |
MS.gene48634.t1 | AT1G51990 | 27.311 | 238 | 160 | 6 | 33 | 263 | 32 | 263 | 1.58e-17 | 81.6 |
MS.gene48634.t1 | AT1G51990 | 27.311 | 238 | 160 | 6 | 33 | 263 | 32 | 263 | 8.79e-17 | 79.7 |
MS.gene48634.t1 | AT5G53810 | 28.689 | 244 | 159 | 6 | 31 | 263 | 40 | 279 | 2.50e-16 | 78.2 |
MS.gene48634.t1 | AT1G63140 | 27.037 | 270 | 178 | 8 | 9 | 264 | 39 | 303 | 7.36e-16 | 76.3 |
MS.gene48634.t1 | AT1G33030 | 27.801 | 241 | 159 | 9 | 31 | 264 | 21 | 253 | 1.02e-15 | 75.5 |
MS.gene48634.t1 | AT1G33030 | 27.801 | 241 | 159 | 9 | 31 | 264 | 21 | 253 | 1.20e-15 | 75.5 |
MS.gene48634.t1 | AT1G63140 | 26.766 | 269 | 178 | 8 | 9 | 263 | 19 | 282 | 4.56e-15 | 74.7 |
MS.gene48634.t1 | AT1G63140 | 26.766 | 269 | 178 | 8 | 9 | 263 | 39 | 302 | 4.94e-15 | 74.7 |
MS.gene48634.t1 | AT1G77530 | 29.630 | 243 | 157 | 6 | 31 | 263 | 44 | 282 | 5.52e-15 | 74.3 |
MS.gene48634.t1 | AT1G33030 | 26.360 | 239 | 163 | 7 | 31 | 263 | 21 | 252 | 1.06e-14 | 73.6 |
Find 55 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGCAAGAGGAGAGACATTT+TGG | 0.134700 | 4.1:-67754913 | MS.gene48634:CDS |
TGTATATATGTTTGTATAGA+TGG | 0.289789 | 4.1:+67755314 | None:intergenic |
TAGCCATGTGTTTGAAGGTT+TGG | 0.322024 | 4.1:-67754792 | MS.gene48634:CDS |
CTCAGTGAGCCATTTGTTAG+AGG | 0.332609 | 4.1:+67754961 | None:intergenic |
TAAAGGACACTAACTTTAGA+AGG | 0.352110 | 4.1:+67755175 | None:intergenic |
GCTAATTCTGTAAGAGTCAT+TGG | 0.355375 | 4.1:+67755217 | None:intergenic |
GATGAAAATTTGAAATTTGT+TGG | 0.393974 | 4.1:-67754650 | MS.gene48634:CDS |
GTTGATGTTGGAGGTGGGAC+AGG | 0.396355 | 4.1:-67754761 | MS.gene48634:CDS |
TGAGGTGAGGAAAAGTTTCA+TGG | 0.410589 | 4.1:+67754720 | None:intergenic |
GAGTATAGCCATGTGTTTGA+AGG | 0.421443 | 4.1:-67754797 | MS.gene48634:CDS |
CCACTGATGAGAAGCATTGA+AGG | 0.442792 | 4.1:+67755052 | None:intergenic |
TCCCTGGTTGATGTTGGAGG+TGG | 0.450465 | 4.1:-67754767 | MS.gene48634:CDS |
CTCAAATCTGCTGTGGAACT+AGG | 0.472122 | 4.1:-67755271 | MS.gene48634:CDS |
GATGTTGGAGGTGGGACAGG+AGG | 0.486832 | 4.1:-67754758 | MS.gene48634:CDS |
GTTTGAAGGTTTGGAGTCCC+TGG | 0.488507 | 4.1:-67754783 | MS.gene48634:CDS |
GATCAAATACTATGCATTTG+AGG | 0.496242 | 4.1:+67754702 | None:intergenic |
CAGGTTGTAAGTAACTTGTC+TGG | 0.502887 | 4.1:-67754674 | MS.gene48634:CDS |
GCAAACGCAAGAGACGATAA+AGG | 0.507273 | 4.1:+67755158 | None:intergenic |
TTGGAGTCCCTGGTTGATGT+TGG | 0.509648 | 4.1:-67754773 | MS.gene48634:CDS |
CACAGCAGATTTGAGTGCCA+TGG | 0.511000 | 4.1:+67755279 | None:intergenic |
AGTCTCTTTGAGAGCGCAAG+AGG | 0.511386 | 4.1:-67754926 | MS.gene48634:CDS |
TGAAGCACTCCGCTAACAAA+TGG | 0.512286 | 4.1:+67755010 | None:intergenic |
ACACTGATGAATGGCAAAGA+AGG | 0.516027 | 4.1:-67755106 | MS.gene48634:CDS |
TGTGGCACTCCTCTAACAAA+TGG | 0.518573 | 4.1:-67754970 | MS.gene48634:CDS |
GAGTCCCTGGTTGATGTTGG+AGG | 0.529815 | 4.1:-67754770 | MS.gene48634:CDS |
GAAAATTTGAAATTTGTTGG+TGG | 0.531638 | 4.1:-67754647 | MS.gene48634:CDS |
TGTTTGTCACCATTTGTTAG+CGG | 0.537198 | 4.1:-67755019 | MS.gene48634:CDS |
TTGAGTAAAACAACATCTGC+AGG | 0.545132 | 4.1:+67754602 | None:intergenic |
ATCCATGCCGTCTGAACGTG+TGG | 0.545741 | 4.1:-67754988 | MS.gene48634:CDS |
CCCTGGTTGATGTTGGAGGT+GGG | 0.547433 | 4.1:-67754766 | MS.gene48634:CDS |
ATACAGCTTTATAAATTCCA+TGG | 0.553200 | 4.1:-67755296 | MS.gene48634:CDS |
TCCCACCTCCAACATCAACC+AGG | 0.558273 | 4.1:+67754765 | None:intergenic |
CATAGTATTTGATCAACCAC+AGG | 0.564742 | 4.1:-67754693 | MS.gene48634:CDS |
GAGTATGTTTCAAGAGGCCA+TGG | 0.566423 | 4.1:-67754855 | MS.gene48634:CDS |
GACAAGTTACTTACAACCTG+TGG | 0.570330 | 4.1:+67754677 | None:intergenic |
CCTTCAATGCTTCTCATCAG+TGG | 0.573536 | 4.1:-67755052 | MS.gene48634:CDS |
CAAATGGATTTCAAGTGCAA+TGG | 0.577941 | 4.1:-67755370 | MS.gene48634:CDS |
CAAATGGCTCACTGAGGACA+AGG | 0.577988 | 4.1:-67754954 | MS.gene48634:CDS |
TGCCACACGTTCAGACGGCA+TGG | 0.581336 | 4.1:+67754986 | None:intergenic |
GATTTGAGAATCAGCTGCCA+TGG | 0.584730 | 4.1:+67754838 | None:intergenic |
CATGGCACTCAAATCTGCTG+TGG | 0.591711 | 4.1:-67755278 | MS.gene48634:CDS |
AATACTATGCATTTGAGGTG+AGG | 0.599469 | 4.1:+67754707 | None:intergenic |
TTGCGTTTGCTAACACACAA+TGG | 0.605432 | 4.1:-67755145 | MS.gene48634:CDS |
GGACACTAACTTTAGAAGGG+TGG | 0.612811 | 4.1:+67755179 | None:intergenic |
AGGAGTGCCACACGTTCAGA+CGG | 0.616722 | 4.1:+67754981 | None:intergenic |
AGGGTGGAGTTTCAAAGATG+AGG | 0.627418 | 4.1:+67755195 | None:intergenic |
TGAACTGAGTATGTTTCAAG+AGG | 0.628302 | 4.1:-67754861 | MS.gene48634:CDS |
AAAGGACACTAACTTTAGAA+GGG | 0.634971 | 4.1:+67755176 | None:intergenic |
GCAGATGCAATCCACAACCA+TGG | 0.642290 | 4.1:-67755244 | MS.gene48634:CDS |
AGTAAAACAACATCTGCAGG+AGG | 0.655623 | 4.1:+67754605 | None:intergenic |
ACTCCAAACCTTCAAACACA+TGG | 0.661101 | 4.1:+67754789 | None:intergenic |
CTGATGAGAAGCATTGAAGG+AGG | 0.666811 | 4.1:+67755055 | None:intergenic |
CCCACCTCCAACATCAACCA+GGG | 0.674030 | 4.1:+67754766 | None:intergenic |
GTAAAACAACATCTGCAGGA+GGG | 0.684452 | 4.1:+67754606 | None:intergenic |
CTCTAACAAATGGCTCACTG+AGG | 0.728882 | 4.1:-67754960 | MS.gene48634:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGTATATATGTTTGTATAGA+TGG | + | chr4.1:67754630-67754649 | None:intergenic | 20.0% |
!!! | GATGAAAATTTGAAATTTGT+TGG | - | chr4.1:67755291-67755310 | MS.gene48634:CDS | 20.0% |
!! | ATACAGCTTTATAAATTCCA+TGG | - | chr4.1:67754645-67754664 | MS.gene48634:CDS | 25.0% |
!!! | GAAAATTTGAAATTTGTTGG+TGG | - | chr4.1:67755294-67755313 | MS.gene48634:CDS | 25.0% |
GATCAAATACTATGCATTTG+AGG | + | chr4.1:67755242-67755261 | None:intergenic | 30.0% | |
TAAAGGACACTAACTTTAGA+AGG | + | chr4.1:67754769-67754788 | None:intergenic | 30.0% | |
! | AAAGGACACTAACTTTAGAA+GGG | + | chr4.1:67754768-67754787 | None:intergenic | 30.0% |
CATAGTATTTGATCAACCAC+AGG | - | chr4.1:67755248-67755267 | MS.gene48634:CDS | 35.0% | |
GCAAAAACAACACTGATGAA+TGG | - | chr4.1:67754826-67754845 | MS.gene48634:CDS | 35.0% | |
GCTAATTCTGTAAGAGTCAT+TGG | + | chr4.1:67754727-67754746 | None:intergenic | 35.0% | |
TGAACTGAGTATGTTTCAAG+AGG | - | chr4.1:67755080-67755099 | MS.gene48634:CDS | 35.0% | |
TTGAGTAAAACAACATCTGC+AGG | + | chr4.1:67755342-67755361 | None:intergenic | 35.0% | |
! | AATACTATGCATTTGAGGTG+AGG | + | chr4.1:67755237-67755256 | None:intergenic | 35.0% |
! | TGTTTGTCACCATTTGTTAG+CGG | - | chr4.1:67754922-67754941 | MS.gene48634:CDS | 35.0% |
!!! | TAAGAGTCATTGGTTTTCCA+TGG | + | chr4.1:67754717-67754736 | None:intergenic | 35.0% |
!!! | TGCAGATGTTGTTTTACTCA+AGG | - | chr4.1:67755341-67755360 | MS.gene48634:CDS | 35.0% |
ACACTGATGAATGGCAAAGA+AGG | - | chr4.1:67754835-67754854 | MS.gene48634:CDS | 40.0% | |
ACTCCAAACCTTCAAACACA+TGG | + | chr4.1:67755155-67755174 | None:intergenic | 40.0% | |
AGTAAAACAACATCTGCAGG+AGG | + | chr4.1:67755339-67755358 | None:intergenic | 40.0% | |
GACAAGTTACTTACAACCTG+TGG | + | chr4.1:67755267-67755286 | None:intergenic | 40.0% | |
GAGTATAGCCATGTGTTTGA+AGG | - | chr4.1:67755144-67755163 | MS.gene48634:CDS | 40.0% | |
GTAAAACAACATCTGCAGGA+GGG | + | chr4.1:67755338-67755357 | None:intergenic | 40.0% | |
TAGCCATGTGTTTGAAGGTT+TGG | - | chr4.1:67755149-67755168 | MS.gene48634:CDS | 40.0% | |
TGAGGTGAGGAAAAGTTTCA+TGG | + | chr4.1:67755224-67755243 | None:intergenic | 40.0% | |
! | CAGGTTGTAAGTAACTTGTC+TGG | - | chr4.1:67755267-67755286 | MS.gene48634:CDS | 40.0% |
! | TTGCGTTTGCTAACACACAA+TGG | - | chr4.1:67754796-67754815 | MS.gene48634:CDS | 40.0% |
!!! | TCATTGGTTTTCCATGGTTG+TGG | + | chr4.1:67754711-67754730 | None:intergenic | 40.0% |
AGGGTGGAGTTTCAAAGATG+AGG | + | chr4.1:67754749-67754768 | None:intergenic | 45.0% | |
CCTTCAATGCTTCTCATCAG+TGG | - | chr4.1:67754889-67754908 | MS.gene48634:CDS | 45.0% | |
CTCAAATCTGCTGTGGAACT+AGG | - | chr4.1:67754670-67754689 | MS.gene48634:CDS | 45.0% | |
CTCTAACAAATGGCTCACTG+AGG | - | chr4.1:67754981-67755000 | MS.gene48634:CDS | 45.0% | |
GAGTATGTTTCAAGAGGCCA+TGG | - | chr4.1:67755086-67755105 | MS.gene48634:CDS | 45.0% | |
GATTTGAGAATCAGCTGCCA+TGG | + | chr4.1:67755106-67755125 | None:intergenic | 45.0% | |
GCAAACGCAAGAGACGATAA+AGG | + | chr4.1:67754786-67754805 | None:intergenic | 45.0% | |
TGTGGCACTCCTCTAACAAA+TGG | - | chr4.1:67754971-67754990 | MS.gene48634:CDS | 45.0% | |
! | CGCAAGAGGAGAGACATTTT+GGG | - | chr4.1:67755029-67755048 | MS.gene48634:CDS | 45.0% |
! | CTCAGTGAGCCATTTGTTAG+AGG | + | chr4.1:67754983-67755002 | None:intergenic | 45.0% |
! | GGACACTAACTTTAGAAGGG+TGG | + | chr4.1:67754765-67754784 | None:intergenic | 45.0% |
! | TGAAGCACTCCGCTAACAAA+TGG | + | chr4.1:67754934-67754953 | None:intergenic | 45.0% |
!! | CCACTGATGAGAAGCATTGA+AGG | + | chr4.1:67754892-67754911 | None:intergenic | 45.0% |
!! | CTGATGAGAAGCATTGAAGG+AGG | + | chr4.1:67754889-67754908 | None:intergenic | 45.0% |
CAAATGGCTCACTGAGGACA+AGG | - | chr4.1:67754987-67755006 | MS.gene48634:CDS | 50.0% | |
CACAGCAGATTTGAGTGCCA+TGG | + | chr4.1:67754665-67754684 | None:intergenic | 50.0% | |
CATGGCACTCAAATCTGCTG+TGG | - | chr4.1:67754663-67754682 | MS.gene48634:CDS | 50.0% | |
GCAGATGCAATCCACAACCA+TGG | - | chr4.1:67754697-67754716 | MS.gene48634:CDS | 50.0% | |
! | AGTCTCTTTGAGAGCGCAAG+AGG | - | chr4.1:67755015-67755034 | MS.gene48634:CDS | 50.0% |
! | GCGCAAGAGGAGAGACATTT+TGG | - | chr4.1:67755028-67755047 | MS.gene48634:CDS | 50.0% |
! | GTTTGAAGGTTTGGAGTCCC+TGG | - | chr4.1:67755158-67755177 | MS.gene48634:CDS | 50.0% |
! | TTGGAGTCCCTGGTTGATGT+TGG | - | chr4.1:67755168-67755187 | MS.gene48634:CDS | 50.0% |
ATCCATGCCGTCTGAACGTG+TGG | - | chr4.1:67754953-67754972 | MS.gene48634:CDS | 55.0% | |
CCCACCTCCAACATCAACCA+GGG | + | chr4.1:67755178-67755197 | None:intergenic | 55.0% | |
GTTGATGTTGGAGGTGGGAC+AGG | - | chr4.1:67755180-67755199 | MS.gene48634:CDS | 55.0% | |
TCCCACCTCCAACATCAACC+AGG | + | chr4.1:67755179-67755198 | None:intergenic | 55.0% | |
! | CCCTGGTTGATGTTGGAGGT+GGG | - | chr4.1:67755175-67755194 | MS.gene48634:CDS | 55.0% |
! | GAGTCCCTGGTTGATGTTGG+AGG | - | chr4.1:67755171-67755190 | MS.gene48634:CDS | 55.0% |
! | TCCCTGGTTGATGTTGGAGG+TGG | - | chr4.1:67755174-67755193 | MS.gene48634:CDS | 55.0% |
!! | AGGAGTGCCACACGTTCAGA+CGG | + | chr4.1:67754963-67754982 | None:intergenic | 55.0% |
GATGTTGGAGGTGGGACAGG+AGG | - | chr4.1:67755183-67755202 | MS.gene48634:CDS | 60.0% | |
TGCCACACGTTCAGACGGCA+TGG | + | chr4.1:67754958-67754977 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 67754574 | 67755389 | 67754574 | ID=MS.gene48634 |
chr4.1 | mRNA | 67754574 | 67755389 | 67754574 | ID=MS.gene48634.t1;Parent=MS.gene48634 |
chr4.1 | exon | 67754574 | 67755389 | 67754574 | ID=MS.gene48634.t1.exon1;Parent=MS.gene48634.t1 |
chr4.1 | CDS | 67754574 | 67755389 | 67754574 | ID=cds.MS.gene48634.t1;Parent=MS.gene48634.t1 |
Gene Sequence |
Protein sequence |