Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060791.t1 | ABD83946.1 | 93.6 | 264 | 16 | 1 | 1 | 264 | 1 | 263 | 7.80E-137 | 496.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060791.t1 | Q84KK6 | 77.6 | 268 | 55 | 3 | 1 | 264 | 1 | 267 | 1.7e-116 | 420.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060791.t1 | Q06YR0 | 93.6 | 264 | 16 | 1 | 1 | 264 | 1 | 263 | 5.6e-137 | 496.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060791 | MS.gene48634 | 0.927161 | 1.73E-91 | -1.69E-46 |
MS.gene060791 | MS.gene88260 | 0.840359 | 9.12E-58 | -1.69E-46 |
MS.gene060791 | MS.gene88285 | 0.957246 | 4.31E-115 | -1.69E-46 |
MS.gene060791 | MS.gene93900 | 0.846227 | 2.48E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060791.t1 | MTR_4g033015 | 93.561 | 264 | 16 | 1 | 1 | 264 | 1 | 263 | 0.0 | 502 |
MS.gene060791.t1 | MTR_4g033200 | 93.182 | 264 | 17 | 1 | 1 | 264 | 1 | 263 | 0.0 | 502 |
MS.gene060791.t1 | MTR_4g033150 | 89.394 | 264 | 27 | 1 | 1 | 264 | 1 | 263 | 6.32e-175 | 487 |
MS.gene060791.t1 | MTR_0794s0020 | 89.200 | 250 | 26 | 1 | 1 | 250 | 1 | 249 | 2.38e-166 | 461 |
MS.gene060791.t1 | MTR_4g033085 | 75.758 | 264 | 57 | 2 | 1 | 264 | 1 | 257 | 1.66e-146 | 414 |
MS.gene060791.t1 | MTR_4g033170 | 75.758 | 264 | 57 | 2 | 1 | 264 | 1 | 257 | 2.63e-146 | 414 |
MS.gene060791.t1 | MTR_4g088200 | 72.348 | 264 | 70 | 2 | 1 | 264 | 1 | 261 | 9.44e-139 | 395 |
MS.gene060791.t1 | MTR_4g088190 | 74.717 | 265 | 65 | 2 | 1 | 264 | 1 | 264 | 2.33e-131 | 376 |
MS.gene060791.t1 | MTR_7g014570 | 51.136 | 264 | 118 | 4 | 6 | 269 | 6 | 258 | 1.08e-85 | 260 |
MS.gene060791.t1 | MTR_7g014510 | 47.510 | 261 | 131 | 4 | 6 | 266 | 6 | 260 | 4.52e-80 | 246 |
MS.gene060791.t1 | MTR_5g074680 | 48.235 | 255 | 124 | 5 | 11 | 264 | 12 | 259 | 4.22e-77 | 238 |
MS.gene060791.t1 | MTR_5g074600 | 45.098 | 255 | 132 | 5 | 11 | 264 | 11 | 258 | 8.34e-74 | 229 |
MS.gene060791.t1 | MTR_5g074580 | 46.275 | 255 | 129 | 5 | 11 | 264 | 12 | 259 | 4.69e-73 | 228 |
MS.gene060791.t1 | MTR_7g024500 | 45.560 | 259 | 128 | 5 | 6 | 264 | 5 | 250 | 8.54e-73 | 227 |
MS.gene060791.t1 | MTR_1g076940 | 44.828 | 261 | 138 | 4 | 6 | 264 | 6 | 262 | 7.85e-72 | 224 |
MS.gene060791.t1 | MTR_4g088345 | 48.235 | 255 | 122 | 5 | 11 | 264 | 11 | 256 | 7.91e-70 | 219 |
MS.gene060791.t1 | MTR_4g079160 | 43.922 | 255 | 133 | 4 | 11 | 264 | 10 | 255 | 7.90e-68 | 214 |
MS.gene060791.t1 | MTR_7g024520 | 44.402 | 259 | 131 | 5 | 6 | 264 | 5 | 250 | 1.42e-67 | 213 |
MS.gene060791.t1 | MTR_5g074610 | 45.669 | 254 | 104 | 4 | 11 | 264 | 7 | 226 | 2.02e-67 | 212 |
MS.gene060791.t1 | MTR_5g074540 | 41.961 | 255 | 122 | 6 | 11 | 264 | 11 | 240 | 1.08e-64 | 206 |
MS.gene060791.t1 | MTR_1g076930 | 44.082 | 245 | 127 | 5 | 24 | 265 | 1 | 238 | 1.96e-61 | 194 |
MS.gene060791.t1 | MTR_4g088340 | 46.281 | 242 | 120 | 5 | 24 | 264 | 1 | 233 | 3.09e-61 | 196 |
MS.gene060791.t1 | MTR_4g038440 | 33.459 | 266 | 166 | 6 | 3 | 265 | 14 | 271 | 2.82e-36 | 130 |
MS.gene060791.t1 | MTR_3g083620 | 35.772 | 246 | 146 | 7 | 20 | 264 | 27 | 261 | 4.63e-36 | 132 |
MS.gene060791.t1 | MTR_4g038440 | 33.208 | 265 | 166 | 6 | 3 | 264 | 14 | 270 | 1.57e-34 | 128 |
MS.gene060791.t1 | MTR_0017s0100 | 32.830 | 265 | 167 | 6 | 3 | 264 | 14 | 270 | 1.01e-33 | 126 |
MS.gene060791.t1 | MTR_0079s0070 | 33.471 | 242 | 150 | 6 | 26 | 264 | 3 | 236 | 2.60e-30 | 116 |
MS.gene060791.t1 | MTR_7g012090 | 31.048 | 248 | 156 | 7 | 32 | 269 | 40 | 282 | 9.75e-29 | 112 |
MS.gene060791.t1 | MTR_7g012020 | 32.218 | 239 | 152 | 7 | 32 | 265 | 39 | 272 | 3.49e-28 | 109 |
MS.gene060791.t1 | MTR_7g012020 | 32.099 | 243 | 155 | 7 | 32 | 269 | 39 | 276 | 5.99e-28 | 110 |
MS.gene060791.t1 | MTR_7g011900 | 32.099 | 243 | 155 | 7 | 32 | 269 | 40 | 277 | 1.24e-27 | 109 |
MS.gene060791.t1 | MTR_7g011990 | 31.452 | 248 | 147 | 8 | 32 | 269 | 40 | 274 | 5.16e-27 | 108 |
MS.gene060791.t1 | MTR_7g012070 | 30.645 | 248 | 157 | 8 | 32 | 269 | 40 | 282 | 6.70e-27 | 107 |
MS.gene060791.t1 | MTR_7g012040 | 30.579 | 242 | 159 | 7 | 32 | 269 | 39 | 275 | 6.50e-26 | 105 |
MS.gene060791.t1 | MTR_1g096310 | 29.740 | 269 | 173 | 8 | 8 | 269 | 20 | 279 | 9.75e-25 | 102 |
MS.gene060791.t1 | MTR_1g036460 | 29.762 | 252 | 165 | 7 | 25 | 269 | 30 | 276 | 1.03e-24 | 101 |
MS.gene060791.t1 | MTR_1g036490 | 31.765 | 255 | 156 | 10 | 25 | 269 | 30 | 276 | 6.58e-24 | 99.8 |
MS.gene060791.t1 | MTR_8g068870 | 31.225 | 253 | 162 | 8 | 18 | 264 | 19 | 265 | 1.87e-23 | 98.2 |
MS.gene060791.t1 | MTR_5g098170 | 34.156 | 243 | 141 | 12 | 31 | 264 | 33 | 265 | 4.25e-22 | 94.4 |
MS.gene060791.t1 | MTR_2g055940 | 29.339 | 242 | 162 | 7 | 32 | 269 | 34 | 270 | 7.96e-22 | 93.6 |
MS.gene060791.t1 | MTR_2g072790 | 32.636 | 239 | 146 | 7 | 31 | 264 | 27 | 255 | 2.42e-21 | 92.4 |
MS.gene060791.t1 | MTR_0591s0010 | 30.328 | 244 | 160 | 7 | 26 | 264 | 41 | 279 | 3.40e-20 | 89.4 |
MS.gene060791.t1 | MTR_1g036510 | 29.435 | 248 | 163 | 7 | 25 | 265 | 44 | 286 | 6.84e-20 | 87.4 |
MS.gene060791.t1 | MTR_3g096050 | 31.727 | 249 | 152 | 10 | 23 | 265 | 24 | 260 | 1.14e-19 | 86.3 |
MS.gene060791.t1 | MTR_1g036510 | 28.287 | 251 | 170 | 5 | 25 | 269 | 44 | 290 | 1.39e-19 | 87.8 |
MS.gene060791.t1 | MTR_3g092900 | 30.970 | 268 | 154 | 10 | 9 | 264 | 17 | 265 | 2.05e-19 | 87.0 |
MS.gene060791.t1 | MTR_8g068690 | 29.268 | 246 | 164 | 7 | 26 | 266 | 40 | 280 | 3.83e-19 | 85.1 |
MS.gene060791.t1 | MTR_7g012020 | 31.280 | 211 | 135 | 7 | 32 | 237 | 39 | 244 | 5.08e-19 | 84.3 |
MS.gene060791.t1 | MTR_8g068750 | 29.918 | 244 | 161 | 7 | 26 | 264 | 41 | 279 | 6.70e-19 | 85.5 |
MS.gene060791.t1 | MTR_3g096050 | 31.452 | 248 | 152 | 10 | 23 | 264 | 24 | 259 | 1.21e-18 | 84.7 |
MS.gene060791.t1 | MTR_8g068690 | 29.098 | 244 | 163 | 7 | 26 | 264 | 40 | 278 | 1.78e-18 | 84.3 |
MS.gene060791.t1 | MTR_3g021440 | 29.268 | 246 | 165 | 7 | 28 | 269 | 38 | 278 | 2.10e-17 | 81.3 |
MS.gene060791.t1 | MTR_8g068600 | 28.879 | 232 | 155 | 7 | 38 | 264 | 27 | 253 | 5.18e-17 | 79.3 |
MS.gene060791.t1 | MTR_3g021430 | 28.033 | 239 | 163 | 7 | 32 | 266 | 29 | 262 | 3.40e-16 | 77.8 |
MS.gene060791.t1 | MTR_4g025570 | 44.304 | 79 | 38 | 2 | 6 | 84 | 16 | 88 | 1.42e-14 | 71.2 |
MS.gene060791.t1 | MTR_3g096070 | 29.150 | 247 | 136 | 11 | 23 | 264 | 24 | 236 | 3.16e-14 | 72.0 |
MS.gene060791.t1 | MTR_8g068620 | 35.714 | 112 | 69 | 2 | 153 | 264 | 2 | 110 | 1.05e-13 | 66.6 |
MS.gene060791.t1 | MTR_1g036510 | 27.397 | 219 | 148 | 6 | 25 | 236 | 44 | 258 | 1.17e-12 | 66.6 |
MS.gene060791.t1 | MTR_8g024160 | 30.357 | 168 | 111 | 4 | 98 | 264 | 68 | 230 | 2.34e-12 | 66.2 |
MS.gene060791.t1 | MTR_6g078850 | 25.475 | 263 | 179 | 8 | 9 | 264 | 33 | 285 | 1.35e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060791.t1 | AT4G35160 | 33.333 | 261 | 148 | 10 | 16 | 264 | 29 | 275 | 3.86e-24 | 100 |
MS.gene060791.t1 | AT4G35150 | 29.921 | 254 | 123 | 9 | 16 | 264 | 15 | 218 | 6.49e-24 | 99.0 |
MS.gene060791.t1 | AT5G54160 | 33.197 | 244 | 139 | 8 | 31 | 264 | 34 | 263 | 2.62e-23 | 97.8 |
MS.gene060791.t1 | AT3G53140 | 33.740 | 246 | 139 | 11 | 31 | 264 | 27 | 260 | 6.17e-22 | 94.0 |
MS.gene060791.t1 | AT1G77520 | 30.328 | 244 | 155 | 7 | 31 | 264 | 44 | 282 | 5.96e-21 | 91.7 |
MS.gene060791.t1 | AT5G53810 | 29.388 | 245 | 157 | 7 | 31 | 264 | 40 | 279 | 3.36e-16 | 78.2 |
MS.gene060791.t1 | AT1G51990 | 26.778 | 239 | 161 | 7 | 33 | 264 | 32 | 263 | 2.68e-15 | 75.1 |
MS.gene060791.t1 | AT1G33030 | 26.971 | 241 | 162 | 8 | 31 | 265 | 21 | 253 | 7.81e-15 | 72.8 |
MS.gene060791.t1 | AT1G33030 | 28.099 | 242 | 158 | 10 | 31 | 265 | 21 | 253 | 1.10e-14 | 72.8 |
MS.gene060791.t1 | AT1G51990 | 26.778 | 239 | 161 | 7 | 33 | 264 | 32 | 263 | 1.61e-14 | 73.2 |
MS.gene060791.t1 | AT1G63140 | 27.306 | 271 | 177 | 9 | 9 | 265 | 39 | 303 | 1.94e-14 | 72.4 |
MS.gene060791.t1 | AT1G33030 | 26.667 | 240 | 162 | 8 | 31 | 264 | 21 | 252 | 6.86e-14 | 71.2 |
MS.gene060791.t1 | AT1G63140 | 27.037 | 270 | 177 | 9 | 9 | 264 | 19 | 282 | 8.84e-14 | 70.9 |
MS.gene060791.t1 | AT1G77530 | 29.918 | 244 | 156 | 7 | 31 | 264 | 44 | 282 | 1.12e-13 | 70.5 |
MS.gene060791.t1 | AT1G63140 | 27.037 | 270 | 177 | 9 | 9 | 264 | 39 | 302 | 1.22e-13 | 70.5 |
Find 56 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGCAAGAGGAGAGACATTT+TGG | 0.134700 | 4.4:-70572590 | MS.gene060791:CDS |
TGTATATATGTTTGTATAGA+TGG | 0.289789 | 4.4:+70572991 | None:intergenic |
TAGCCATGTGTTTGAAGGTT+TGG | 0.322024 | 4.4:-70572469 | MS.gene060791:CDS |
CTCAGTGAGCCATTTGTTAG+AGG | 0.332609 | 4.4:+70572638 | None:intergenic |
TAAAGGACACTAACTTTAGA+AGG | 0.352110 | 4.4:+70572852 | None:intergenic |
GCTAATTCTGTAAGAGTCAT+TGG | 0.355375 | 4.4:+70572894 | None:intergenic |
GATGAAAATTTGAAATTTGT+TGG | 0.393974 | 4.4:-70572324 | MS.gene060791:CDS |
GTTGATGTTGGAGGTGGGAC+AGG | 0.396355 | 4.4:-70572438 | MS.gene060791:CDS |
TGAGGTGAGGAAAAGTTTCA+TGG | 0.410589 | 4.4:+70572397 | None:intergenic |
GAGTATAGCCATGTGTTTGA+AGG | 0.421443 | 4.4:-70572474 | MS.gene060791:CDS |
CCACTGATGAGAAGCATTGA+AGG | 0.442792 | 4.4:+70572729 | None:intergenic |
TCCCTGGTTGATGTTGGAGG+TGG | 0.450465 | 4.4:-70572444 | MS.gene060791:CDS |
CCTGTGGTTGATAACTTGTC+TGG | 0.470750 | 4.4:-70572348 | MS.gene060791:CDS |
CTCAAATCTGCTGTGGAACT+AGG | 0.472122 | 4.4:-70572948 | MS.gene060791:CDS |
GATGTTGGAGGTGGGACAGG+AGG | 0.486832 | 4.4:-70572435 | MS.gene060791:CDS |
GTTTGAAGGTTTGGAGTCCC+TGG | 0.488507 | 4.4:-70572460 | MS.gene060791:CDS |
GATCAAATACTATGCATTTG+AGG | 0.496242 | 4.4:+70572379 | None:intergenic |
GCAAACGCAAGAGACGATAA+AGG | 0.507273 | 4.4:+70572835 | None:intergenic |
TTGGAGTCCCTGGTTGATGT+TGG | 0.509648 | 4.4:-70572450 | MS.gene060791:CDS |
CACAGCAGATTTGAGTGCCA+TGG | 0.511000 | 4.4:+70572956 | None:intergenic |
AGTCTCTTTGAGAGCGCAAG+AGG | 0.511386 | 4.4:-70572603 | MS.gene060791:CDS |
TGAAGCACTCCGCTAACAAA+TGG | 0.512286 | 4.4:+70572687 | None:intergenic |
ACACTGATGAATGGCAAAGA+AGG | 0.516027 | 4.4:-70572783 | MS.gene060791:CDS |
TGTGGCACTCCTCTAACAAA+TGG | 0.518573 | 4.4:-70572647 | MS.gene060791:CDS |
GAGTCCCTGGTTGATGTTGG+AGG | 0.529815 | 4.4:-70572447 | MS.gene060791:CDS |
GAAAATTTGAAATTTGTTGG+TGG | 0.531638 | 4.4:-70572321 | MS.gene060791:CDS |
TGTTTGTCACCATTTGTTAG+CGG | 0.537198 | 4.4:-70572696 | MS.gene060791:CDS |
ATCCATGCCGTCTGAACGTG+TGG | 0.545741 | 4.4:-70572665 | MS.gene060791:CDS |
CCCTGGTTGATGTTGGAGGT+GGG | 0.547433 | 4.4:-70572443 | MS.gene060791:CDS |
ATACAGCTTTATAAATTCCA+TGG | 0.553200 | 4.4:-70572973 | MS.gene060791:CDS |
TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4.4:+70572276 | None:intergenic |
AAGTTATCAACCACAGGCTG+TGG | 0.557297 | 4.4:+70572354 | None:intergenic |
TCCCACCTCCAACATCAACC+AGG | 0.558273 | 4.4:+70572442 | None:intergenic |
GAGTATGTTTCAAGAGGCCA+TGG | 0.566423 | 4.4:-70572532 | MS.gene060791:CDS |
CCTTCAATGCTTCTCATCAG+TGG | 0.573536 | 4.4:-70572729 | MS.gene060791:CDS |
CAAATGGATTTCAAGTGCAA+TGG | 0.577941 | 4.4:-70573047 | MS.gene060791:CDS |
CAAATGGCTCACTGAGGACA+AGG | 0.577988 | 4.4:-70572631 | MS.gene060791:CDS |
TGCCACACGTTCAGACGGCA+TGG | 0.581336 | 4.4:+70572663 | None:intergenic |
GATTTGAGAATCAGCTGCCA+TGG | 0.584730 | 4.4:+70572515 | None:intergenic |
CATGGCACTCAAATCTGCTG+TGG | 0.591711 | 4.4:-70572955 | MS.gene060791:CDS |
AATACTATGCATTTGAGGTG+AGG | 0.599469 | 4.4:+70572384 | None:intergenic |
TTGCGTTTGCTAACACACAA+TGG | 0.605432 | 4.4:-70572822 | MS.gene060791:CDS |
CCAGACAAGTTATCAACCAC+AGG | 0.606816 | 4.4:+70572348 | None:intergenic |
GGACACTAACTTTAGAAGGG+TGG | 0.612811 | 4.4:+70572856 | None:intergenic |
ATTTGATCAACCACAGCCTG+TGG | 0.614426 | 4.4:-70572364 | MS.gene060791:CDS |
AGGAGTGCCACACGTTCAGA+CGG | 0.616722 | 4.4:+70572658 | None:intergenic |
AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 4.4:+70572279 | None:intergenic |
AGGGTGGAGTTTCAAAGATG+AGG | 0.627418 | 4.4:+70572872 | None:intergenic |
TGAACTGAGTATGTTTCAAG+AGG | 0.628302 | 4.4:-70572538 | MS.gene060791:CDS |
AAAGGACACTAACTTTAGAA+GGG | 0.634971 | 4.4:+70572853 | None:intergenic |
GCAGATGCAATCCACAACCA+TGG | 0.642290 | 4.4:-70572921 | MS.gene060791:CDS |
ACTCCAAACCTTCAAACACA+TGG | 0.661101 | 4.4:+70572466 | None:intergenic |
CTGATGAGAAGCATTGAAGG+AGG | 0.666811 | 4.4:+70572732 | None:intergenic |
CCCACCTCCAACATCAACCA+GGG | 0.674030 | 4.4:+70572443 | None:intergenic |
GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 4.4:+70572280 | None:intergenic |
CTCTAACAAATGGCTCACTG+AGG | 0.728882 | 4.4:-70572637 | MS.gene060791:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGTATATATGTTTGTATAGA+TGG | + | chr4.4:70572304-70572323 | None:intergenic | 20.0% |
!!! | GATGAAAATTTGAAATTTGT+TGG | - | chr4.4:70572968-70572987 | MS.gene060791:CDS | 20.0% |
!! | ATACAGCTTTATAAATTCCA+TGG | - | chr4.4:70572319-70572338 | MS.gene060791:CDS | 25.0% |
!!! | GAAAATTTGAAATTTGTTGG+TGG | - | chr4.4:70572971-70572990 | MS.gene060791:CDS | 25.0% |
GATCAAATACTATGCATTTG+AGG | + | chr4.4:70572916-70572935 | None:intergenic | 30.0% | |
TAAAGGACACTAACTTTAGA+AGG | + | chr4.4:70572443-70572462 | None:intergenic | 30.0% | |
! | AAAGGACACTAACTTTAGAA+GGG | + | chr4.4:70572442-70572461 | None:intergenic | 30.0% |
GCAAAAACAACACTGATGAA+TGG | - | chr4.4:70572500-70572519 | MS.gene060791:CDS | 35.0% | |
GCTAATTCTGTAAGAGTCAT+TGG | + | chr4.4:70572401-70572420 | None:intergenic | 35.0% | |
TGAACTGAGTATGTTTCAAG+AGG | - | chr4.4:70572754-70572773 | MS.gene060791:CDS | 35.0% | |
! | AATACTATGCATTTGAGGTG+AGG | + | chr4.4:70572911-70572930 | None:intergenic | 35.0% |
! | TGTTTGTCACCATTTGTTAG+CGG | - | chr4.4:70572596-70572615 | MS.gene060791:CDS | 35.0% |
!!! | TAAGAGTCATTGGTTTTCCA+TGG | + | chr4.4:70572391-70572410 | None:intergenic | 35.0% |
ACACTGATGAATGGCAAAGA+AGG | - | chr4.4:70572509-70572528 | MS.gene060791:CDS | 40.0% | |
ACTCCAAACCTTCAAACACA+TGG | + | chr4.4:70572829-70572848 | None:intergenic | 40.0% | |
GAGTATAGCCATGTGTTTGA+AGG | - | chr4.4:70572818-70572837 | MS.gene060791:CDS | 40.0% | |
TAGCCATGTGTTTGAAGGTT+TGG | - | chr4.4:70572823-70572842 | MS.gene060791:CDS | 40.0% | |
TGAGGTGAGGAAAAGTTTCA+TGG | + | chr4.4:70572898-70572917 | None:intergenic | 40.0% | |
TTGAGTAAAACAGCATCTGC+AGG | + | chr4.4:70573019-70573038 | None:intergenic | 40.0% | |
! | TTGCGTTTGCTAACACACAA+TGG | - | chr4.4:70572470-70572489 | MS.gene060791:CDS | 40.0% |
!!! | TCATTGGTTTTCCATGGTTG+TGG | + | chr4.4:70572385-70572404 | None:intergenic | 40.0% |
!!! | TGCAGATGCTGTTTTACTCA+AGG | - | chr4.4:70573018-70573037 | MS.gene060791:CDS | 40.0% |
AAGTTATCAACCACAGGCTG+TGG | + | chr4.4:70572941-70572960 | None:intergenic | 45.0% | |
AGGGTGGAGTTTCAAAGATG+AGG | + | chr4.4:70572423-70572442 | None:intergenic | 45.0% | |
AGTAAAACAGCATCTGCAGG+AGG | + | chr4.4:70573016-70573035 | None:intergenic | 45.0% | |
ATTTGATCAACCACAGCCTG+TGG | - | chr4.4:70572928-70572947 | MS.gene060791:CDS | 45.0% | |
CCAGACAAGTTATCAACCAC+AGG | + | chr4.4:70572947-70572966 | None:intergenic | 45.0% | |
CCTTCAATGCTTCTCATCAG+TGG | - | chr4.4:70572563-70572582 | MS.gene060791:CDS | 45.0% | |
CTCAAATCTGCTGTGGAACT+AGG | - | chr4.4:70572344-70572363 | MS.gene060791:CDS | 45.0% | |
CTCTAACAAATGGCTCACTG+AGG | - | chr4.4:70572655-70572674 | MS.gene060791:CDS | 45.0% | |
GAGTATGTTTCAAGAGGCCA+TGG | - | chr4.4:70572760-70572779 | MS.gene060791:CDS | 45.0% | |
GATTTGAGAATCAGCTGCCA+TGG | + | chr4.4:70572780-70572799 | None:intergenic | 45.0% | |
GCAAACGCAAGAGACGATAA+AGG | + | chr4.4:70572460-70572479 | None:intergenic | 45.0% | |
GTAAAACAGCATCTGCAGGA+GGG | + | chr4.4:70573015-70573034 | None:intergenic | 45.0% | |
TGTGGCACTCCTCTAACAAA+TGG | - | chr4.4:70572645-70572664 | MS.gene060791:CDS | 45.0% | |
! | CGCAAGAGGAGAGACATTTT+GGG | - | chr4.4:70572703-70572722 | MS.gene060791:CDS | 45.0% |
! | CTCAGTGAGCCATTTGTTAG+AGG | + | chr4.4:70572657-70572676 | None:intergenic | 45.0% |
! | GGACACTAACTTTAGAAGGG+TGG | + | chr4.4:70572439-70572458 | None:intergenic | 45.0% |
! | TGAAGCACTCCGCTAACAAA+TGG | + | chr4.4:70572608-70572627 | None:intergenic | 45.0% |
!! | CCACTGATGAGAAGCATTGA+AGG | + | chr4.4:70572566-70572585 | None:intergenic | 45.0% |
!! | CCTGTGGTTGATAACTTGTC+TGG | - | chr4.4:70572944-70572963 | MS.gene060791:CDS | 45.0% |
!! | CTGATGAGAAGCATTGAAGG+AGG | + | chr4.4:70572563-70572582 | None:intergenic | 45.0% |
CAAATGGCTCACTGAGGACA+AGG | - | chr4.4:70572661-70572680 | MS.gene060791:CDS | 50.0% | |
CACAGCAGATTTGAGTGCCA+TGG | + | chr4.4:70572339-70572358 | None:intergenic | 50.0% | |
CATGGCACTCAAATCTGCTG+TGG | - | chr4.4:70572337-70572356 | MS.gene060791:CDS | 50.0% | |
GCAGATGCAATCCACAACCA+TGG | - | chr4.4:70572371-70572390 | MS.gene060791:CDS | 50.0% | |
! | AGTCTCTTTGAGAGCGCAAG+AGG | - | chr4.4:70572689-70572708 | MS.gene060791:CDS | 50.0% |
! | GCGCAAGAGGAGAGACATTT+TGG | - | chr4.4:70572702-70572721 | MS.gene060791:CDS | 50.0% |
! | GTTTGAAGGTTTGGAGTCCC+TGG | - | chr4.4:70572832-70572851 | MS.gene060791:CDS | 50.0% |
! | TTGGAGTCCCTGGTTGATGT+TGG | - | chr4.4:70572842-70572861 | MS.gene060791:CDS | 50.0% |
ATCCATGCCGTCTGAACGTG+TGG | - | chr4.4:70572627-70572646 | MS.gene060791:CDS | 55.0% | |
CCCACCTCCAACATCAACCA+GGG | + | chr4.4:70572852-70572871 | None:intergenic | 55.0% | |
GTTGATGTTGGAGGTGGGAC+AGG | - | chr4.4:70572854-70572873 | MS.gene060791:CDS | 55.0% | |
TCCCACCTCCAACATCAACC+AGG | + | chr4.4:70572853-70572872 | None:intergenic | 55.0% | |
! | CCCTGGTTGATGTTGGAGGT+GGG | - | chr4.4:70572849-70572868 | MS.gene060791:CDS | 55.0% |
! | GAGTCCCTGGTTGATGTTGG+AGG | - | chr4.4:70572845-70572864 | MS.gene060791:CDS | 55.0% |
! | TCCCTGGTTGATGTTGGAGG+TGG | - | chr4.4:70572848-70572867 | MS.gene060791:CDS | 55.0% |
!! | AGGAGTGCCACACGTTCAGA+CGG | + | chr4.4:70572637-70572656 | None:intergenic | 55.0% |
GATGTTGGAGGTGGGACAGG+AGG | - | chr4.4:70572857-70572876 | MS.gene060791:CDS | 60.0% | |
TGCCACACGTTCAGACGGCA+TGG | + | chr4.4:70572632-70572651 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 70572248 | 70573066 | 70572248 | ID=MS.gene060791 |
chr4.4 | mRNA | 70572248 | 70573066 | 70572248 | ID=MS.gene060791.t1;Parent=MS.gene060791 |
chr4.4 | exon | 70572248 | 70573066 | 70572248 | ID=MS.gene060791.t1.exon1;Parent=MS.gene060791.t1 |
chr4.4 | CDS | 70572248 | 70573066 | 70572248 | ID=cds.MS.gene060791.t1;Parent=MS.gene060791.t1 |
Gene Sequence |
Protein sequence |