Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48757.t1 | XP_024634749.1 | 95.1 | 288 | 14 | 0 | 1 | 288 | 1 | 288 | 1.00E-139 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48757.t1 | A0A2K3P1A0 | 79.2 | 288 | 36 | 2 | 1 | 288 | 1 | 264 | 5.5e-106 | 393.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene48757 | 0.804232 | 2.38E-49 | -1.69E-46 |
| MS.gene04917 | MS.gene48757 | 0.802733 | 4.88E-49 | -1.69E-46 |
| MS.gene056752 | MS.gene48757 | 0.802634 | 5.11E-49 | -1.69E-46 |
| MS.gene058438 | MS.gene48757 | 0.812581 | 3.94E-51 | -1.69E-46 |
| MS.gene060910 | MS.gene48757 | 0.81589 | 7.33E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48757.t1 | MTR_1g067720 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 4.32e-86 | 254 |
| MS.gene48757.t1 | MTR_1g067710 | 91.603 | 131 | 11 | 0 | 158 | 288 | 6 | 136 | 4.53e-83 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48757.t1 | AT1G33500 | 47.163 | 282 | 121 | 3 | 1 | 282 | 1 | 254 | 1.97e-80 | 244 |
| MS.gene48757.t1 | AT1G33500 | 47.163 | 282 | 121 | 3 | 1 | 282 | 1 | 254 | 1.97e-80 | 244 |
| MS.gene48757.t1 | AT1G33500 | 46.768 | 263 | 112 | 3 | 1 | 263 | 1 | 235 | 3.43e-70 | 218 |
Find 40 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCAGAGAAAATGAGTTTA+AGG | 0.175370 | 4.4:+72977171 | MS.gene48757:CDS |
| AAGAGCAAACCTGTTGCTTT+TGG | 0.247212 | 4.4:-72975258 | None:intergenic |
| CATAGACTATGGAGCTTATT+CGG | 0.287182 | 4.4:+72975081 | MS.gene48757:intron |
| TTAGAAATGGACATCGATTC+AGG | 0.289274 | 4.4:+72973367 | MS.gene48757:CDS |
| CTGCATAGACTGCAAGTATT+CGG | 0.357293 | 4.4:-72977576 | None:intergenic |
| GAATATTCGCACTTTAGAAA+TGG | 0.388250 | 4.4:+72973354 | MS.gene48757:CDS |
| CTAGATAAAACTTGCTATTG+AGG | 0.411209 | 4.4:+72977141 | MS.gene48757:intron |
| TTCTTCAGCGGAAATCTTTG+CGG | 0.422696 | 4.4:-72973317 | None:intergenic |
| TGCGCAAGTGGTTGAGGATA+CGG | 0.426376 | 4.4:+72974158 | MS.gene48757:CDS |
| GGCCAAATTCCAAAAGCAAC+AGG | 0.427555 | 4.4:+72975249 | MS.gene48757:CDS |
| CTTATTCGGCAAGAGAAAGT+TGG | 0.460862 | 4.4:+72975095 | MS.gene48757:CDS |
| GAACAACTTAATCACTGAGT+TGG | 0.468913 | 4.4:+72976601 | MS.gene48757:CDS |
| TGAAATTGCGCAAGTGGTTG+AGG | 0.474763 | 4.4:+72974152 | MS.gene48757:CDS |
| CTCTGCAACCTTGCTATAGT+AGG | 0.484365 | 4.4:-72975218 | None:intergenic |
| TATGAAATCCAAGGTTCTCA+TGG | 0.508723 | 4.4:+72976658 | MS.gene48757:CDS |
| GTTAATGTCCATGAGAACCT+TGG | 0.514632 | 4.4:-72976666 | None:intergenic |
| GAAATCTGAAATTGCGCAAG+TGG | 0.536096 | 4.4:+72974146 | MS.gene48757:CDS |
| CATCTGCATTTGTTCTTCAG+CGG | 0.539546 | 4.4:-72973329 | None:intergenic |
| GCAGGGAGAACTCGTGCTGA+TGG | 0.570367 | 4.4:+72976473 | MS.gene48757:intron |
| GCAAGGTTGCAGAGGACATG+AGG | 0.576893 | 4.4:+72975227 | MS.gene48757:CDS |
| TTTCAGAGCCTACTATAGCA+AGG | 0.583687 | 4.4:+72975210 | MS.gene48757:intron |
| TGATATAAATGCTCTTGAAG+AGG | 0.589795 | 4.4:+72977517 | MS.gene48757:CDS |
| GATTCTTGTTATGAAATCCA+AGG | 0.599940 | 4.4:+72976649 | MS.gene48757:CDS |
| CTACTATAGCAAGGTTGCAG+AGG | 0.600848 | 4.4:+72975219 | MS.gene48757:CDS |
| AGTTGGATTCAGCTAAAGCA+AGG | 0.606877 | 4.4:+72976618 | MS.gene48757:CDS |
| GGAAAAGATGAATAAGTCGA+AGG | 0.609770 | 4.4:+72974179 | MS.gene48757:CDS |
| CAGAACTAAGAAGATTAGCA+TGG | 0.612386 | 4.4:+72975553 | MS.gene48757:CDS |
| GAGAAAAGAAGTGAAGCTGA+AGG | 0.615403 | 4.4:+72976308 | MS.gene48757:CDS |
| TAACCGTGCTACAGATAACC+TGG | 0.615780 | 4.4:+72976496 | MS.gene48757:CDS |
| CAAGGTTGCAGAGGACATGA+GGG | 0.626214 | 4.4:+72975228 | MS.gene48757:CDS |
| AAAACTGATTTCAGATGCGG+AGG | 0.626254 | 4.4:+72973288 | MS.gene48757:intron |
| GAAAGAAGTAGAGAAACTCA+AGG | 0.627044 | 4.4:+72977598 | MS.gene48757:CDS |
| CTGCTAAACTATCAGAGAGG+AGG | 0.635521 | 4.4:+72975123 | MS.gene48757:CDS |
| CAACTTATAAAATGTGCTTG+TGG | 0.646559 | 4.4:+72977838 | MS.gene48757:CDS |
| TATAAAATGTGCTTGTGGTG+AGG | 0.649465 | 4.4:+72977843 | MS.gene48757:CDS |
| TGATACATCCAGACTTACAC+AGG | 0.652836 | 4.4:+72974257 | MS.gene48757:CDS |
| ACTTTACGCTCTCACATGAA+CGG | 0.662038 | 4.4:+72973189 | MS.gene48757:CDS |
| ATACCAGGTTATCTGTAGCA+CGG | 0.671547 | 4.4:-72976499 | None:intergenic |
| GGTTCTCATGGACATTAACA+AGG | 0.678444 | 4.4:+72976670 | MS.gene48757:CDS |
| TATCTGCTAAACTATCAGAG+AGG | 0.755836 | 4.4:+72975120 | MS.gene48757:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTATAACTCTTTA+CGG | + | chr4.4:72974901-72974920 | MS.gene48757:intron | 10.0% |
| !!! | ATCAAAATTTTGTAAATATA+TGG | + | chr4.4:72974041-72974060 | MS.gene48757:intron | 10.0% |
| !! | AAAATGAAAATCAATTTAGA+TGG | - | chr4.4:72975193-72975212 | None:intergenic | 15.0% |
| !! | AAAGTAATTATCAACAAAAT+AGG | + | chr4.4:72977662-72977681 | MS.gene48757:intron | 15.0% |
| !! | ATTAACTTTAACAATATCAA+AGG | - | chr4.4:72974298-72974317 | None:intergenic | 15.0% |
| !! | TAATGTAAAAATAGAATTTG+AGG | + | chr4.4:72974547-72974566 | MS.gene48757:intron | 15.0% |
| !! | TCTATTTCCTAATAAAATTA+TGG | - | chr4.4:72975674-72975693 | None:intergenic | 15.0% |
| !!! | AGATTTTCTTTATTTTATCT+CGG | - | chr4.4:72976194-72976213 | None:intergenic | 15.0% |
| !!! | ATCAATTTAGTTTCATAAAA+CGG | - | chr4.4:72976423-72976442 | None:intergenic | 15.0% |
| !!! | ATTTTTTTATAACTCTTTAC+GGG | + | chr4.4:72974902-72974921 | MS.gene48757:intron | 15.0% |
| !!! | GTTTTATATTATAAACACTT+AGG | + | chr4.4:72974476-72974495 | MS.gene48757:intron | 15.0% |
| !!! | TACAAGTTTTTTATATTTCA+AGG | + | chr4.4:72976397-72976416 | MS.gene48757:intron | 15.0% |
| !!! | TATCATTTTTTTATACCATA+TGG | + | chr4.4:72976801-72976820 | MS.gene48757:intron | 15.0% |
| !!! | TGTTTTAATGTAATTTTCAT+CGG | + | chr4.4:72973673-72973692 | MS.gene48757:intron | 15.0% |
| !!! | TTTTATAGAATTAGTAGATT+TGG | + | chr4.4:72973738-72973757 | MS.gene48757:intron | 15.0% |
| !!! | TTTTTATTTCATCATTATCA+AGG | - | chr4.4:72974981-72975000 | None:intergenic | 15.0% |
| !! | AAAATAATTGTCTTCAGAAT+GGG | + | chr4.4:72977028-72977047 | MS.gene48757:intron | 20.0% |
| !! | AAACAAATGTTAACATCAAA+AGG | + | chr4.4:72975362-72975381 | MS.gene48757:intron | 20.0% |
| !! | AAATAAGATCTAACAATTGA+AGG | - | chr4.4:72976217-72976236 | None:intergenic | 20.0% |
| !! | AAGAACAAATTAAAACATTG+AGG | - | chr4.4:72975487-72975506 | None:intergenic | 20.0% |
| !! | AATATCCAAAAACAAAAATG+TGG | - | chr4.4:72976359-72976378 | None:intergenic | 20.0% |
| !! | AATGAAACAATCAAAATTTG+TGG | + | chr4.4:72973435-72973454 | MS.gene48757:intron | 20.0% |
| !! | AGAACAAATTAAAACATTGA+GGG | - | chr4.4:72975486-72975505 | None:intergenic | 20.0% |
| !! | ATATTATAAACACTTAGGTT+TGG | + | chr4.4:72974481-72974500 | MS.gene48757:intron | 20.0% |
| !! | ATTACCAGATTGAAAATTTA+CGG | - | chr4.4:72974092-72974111 | None:intergenic | 20.0% |
| !! | ATTATTGGATTTGATATGAA+TGG | + | chr4.4:72975281-72975300 | MS.gene48757:intron | 20.0% |
| !! | CTATTCATTACTCTATTTAT+TGG | + | chr4.4:72976749-72976768 | MS.gene48757:intron | 20.0% |
| !! | TAAAATAATTGTCTTCAGAA+TGG | + | chr4.4:72977027-72977046 | MS.gene48757:intron | 20.0% |
| !! | TCAATATAGTTGTATGAATA+AGG | - | chr4.4:72975610-72975629 | None:intergenic | 20.0% |
| !!! | AGTTTAAATTCTGTTTCTTA+TGG | - | chr4.4:72975788-72975807 | None:intergenic | 20.0% |
| !!! | ATAATACCATTTGAAATACA+TGG | + | chr4.4:72975401-72975420 | MS.gene48757:intron | 20.0% |
| !!! | ATGTAAATAGTTTTTCAGTA+TGG | - | chr4.4:72974524-72974543 | None:intergenic | 20.0% |
| !!! | ATTTTGTAAATATATGGAAG+TGG | + | chr4.4:72974047-72974066 | MS.gene48757:intron | 20.0% |
| !!! | GATTTCATTAGTTAATGTTT+TGG | + | chr4.4:72974433-72974452 | MS.gene48757:intron | 20.0% |
| !!! | GTTTTTTATTGTGTAATCAA+TGG | + | chr4.4:72974381-72974400 | MS.gene48757:intron | 20.0% |
| !!! | TAACTTGTAAAATTTTCCAT+TGG | - | chr4.4:72977639-72977658 | None:intergenic | 20.0% |
| !!! | TATGTTAACATTGTTGTTTT+TGG | + | chr4.4:72977075-72977094 | MS.gene48757:intron | 20.0% |
| !!! | TCAGATTTTGATGTAAAATT+AGG | - | chr4.4:72973256-72973275 | None:intergenic | 20.0% |
| !!! | TGTTTTAATTTGTTCTTTCA+CGG | + | chr4.4:72975490-72975509 | MS.gene48757:intron | 20.0% |
| !!! | TTTTTTTATAACTCTTTACG+GGG | + | chr4.4:72974903-72974922 | MS.gene48757:intron | 20.0% |
| ! | AAATAATTGTCTTCAGAATG+GGG | + | chr4.4:72977029-72977048 | MS.gene48757:intron | 25.0% |
| ! | AAGTTCAATATACGAATGTT+TGG | - | chr4.4:72976448-72976467 | None:intergenic | 25.0% |
| ! | ATAAAAAGAAAAGAAAAGCC+AGG | + | chr4.4:72974994-72975013 | MS.gene48757:intron | 25.0% |
| ! | ATCAAAAGGTGAATTTATCA+GGG | + | chr4.4:72975376-72975395 | MS.gene48757:intron | 25.0% |
| ! | CAACTAAAATTGACTATGTT+TGG | - | chr4.4:72973854-72973873 | None:intergenic | 25.0% |
| ! | CTTATATGTTGAATTTATGC+AGG | + | chr4.4:72976268-72976287 | MS.gene48757:intron | 25.0% |
| ! | CTTATCAGATTTACTGTATT+TGG | - | chr4.4:72976164-72976183 | None:intergenic | 25.0% |
| ! | GAATAATTGACAGTCTAAAA+AGG | - | chr4.4:72976709-72976728 | None:intergenic | 25.0% |
| ! | GATCACCATTAAAATCTATT+GGG | + | chr4.4:72976053-72976072 | MS.gene48757:intron | 25.0% |
| ! | GGTATAAAAAAATGATACAC+AGG | - | chr4.4:72976798-72976817 | None:intergenic | 25.0% |
| ! | TAATTTATCTTTGTCTGACA+GGG | + | chr4.4:72976566-72976585 | MS.gene48757:intron | 25.0% |
| ! | TAGAAGTTGTAGAAGAAAAT+TGG | - | chr4.4:72976881-72976900 | None:intergenic | 25.0% |
| ! | TAGTTGTATGAATAAGGAAA+AGG | - | chr4.4:72975604-72975623 | None:intergenic | 25.0% |
| ! | TGATCACCATTAAAATCTAT+TGG | + | chr4.4:72976052-72976071 | MS.gene48757:intron | 25.0% |
| ! | TGCTATAGTATTCTTAGATT+TGG | + | chr4.4:72973895-72973914 | MS.gene48757:intron | 25.0% |
| ! | TGTAAAAATAGAATTTGAGG+TGG | + | chr4.4:72974550-72974569 | MS.gene48757:intron | 25.0% |
| ! | TTATTCATTACTCAAGTTAC+TGG | + | chr4.4:72976723-72976742 | MS.gene48757:intron | 25.0% |
| ! | TTGCAACTAATAGAAATCTT+TGG | + | chr4.4:72975519-72975538 | MS.gene48757:intron | 25.0% |
| !! | ACAGCAACCATAATTTTATT+AGG | + | chr4.4:72975664-72975683 | MS.gene48757:intron | 25.0% |
| !! | ATATATGCTTCTGATTTTAC+AGG | + | chr4.4:72977807-72977826 | MS.gene48757:intron | 25.0% |
| !! | CTATATTGAGATCCTTATTT+AGG | + | chr4.4:72975621-72975640 | MS.gene48757:intron | 25.0% |
| !! | GTTATTGATTGTGAAGAATT+TGG | + | chr4.4:72974930-72974949 | MS.gene48757:intron | 25.0% |
| !! | TGTGTTTAATTTCATTTCCA+CGG | + | chr4.4:72973539-72973558 | MS.gene48757:intron | 25.0% |
| !! | TTATCCGTAAATTTTCAATC+TGG | + | chr4.4:72974085-72974104 | MS.gene48757:intron | 25.0% |
| !!! | AAAGTCCACATTTTTGTTTT+TGG | + | chr4.4:72976351-72976370 | MS.gene48757:intron | 25.0% |
| !!! | AAAGTCCACTTGATTTTTTT+AGG | - | chr4.4:72976086-72976105 | None:intergenic | 25.0% |
| !!! | ATTAGTTTGTCAAAACATGT+TGG | - | chr4.4:72975761-72975780 | None:intergenic | 25.0% |
| !!! | CATGTTTTGACAAACTAATT+AGG | + | chr4.4:72975762-72975781 | MS.gene48757:intron | 25.0% |
| !!! | GTGTTTTAATGTCATTTTCT+TGG | + | chr4.4:72973983-72974002 | MS.gene48757:intron | 25.0% |
| !!! | GTTTTTGGATATTAATCTTC+TGG | + | chr4.4:72976366-72976385 | MS.gene48757:intron | 25.0% |
| !!! | TATATTGAACTTAACTTGCA+GGG | + | chr4.4:72976456-72976475 | MS.gene48757:intron | 25.0% |
| AAAAGGATTGAAGAATTGGA+AGG | - | chr4.4:72973221-72973240 | None:intergenic | 30.0% | |
| AAAATCCAGAGTCCTAAATA+AGG | - | chr4.4:72975636-72975655 | None:intergenic | 30.0% | |
| AAAGTAAAGAGAAGAAGGAA+TGG | - | chr4.4:72976856-72976875 | None:intergenic | 30.0% | |
| AACTAATAGAAATCTTTGGC+AGG | + | chr4.4:72975523-72975542 | MS.gene48757:intron | 30.0% | |
| AAGCATATATCCATGATTGA+AGG | - | chr4.4:72977797-72977816 | None:intergenic | 30.0% | |
| AATTTATCTTTGTCTGACAG+GGG | + | chr4.4:72976567-72976586 | MS.gene48757:intron | 30.0% | |
| ACTGTTTCCATATGTTGTAT+TGG | + | chr4.4:72974596-72974615 | MS.gene48757:intron | 30.0% | |
| AGATGGTCAAAACTCTAAAT+TGG | - | chr4.4:72975934-72975953 | None:intergenic | 30.0% | |
| AGCATATATCCATGATTGAA+GGG | - | chr4.4:72977796-72977815 | None:intergenic | 30.0% | |
| AGTGAAAAGGATTGAAGAAT+TGG | - | chr4.4:72973225-72973244 | None:intergenic | 30.0% | |
| ATAAACACCAAAATTGAACG+CGG | - | chr4.4:72973406-72973425 | None:intergenic | 30.0% | |
| ATATTTCTTCCCATAGACTA+TGG | + | chr4.4:72975070-72975089 | MS.gene48757:intron | 30.0% | |
| CAACTTATAAAATGTGCTTG+TGG | + | chr4.4:72977838-72977857 | MS.gene48757:CDS | 30.0% | |
| CATCAAAAGGTGAATTTATC+AGG | + | chr4.4:72975375-72975394 | MS.gene48757:intron | 30.0% | |
| CATTAAAACACAACGTGAAT+CGG | - | chr4.4:72973974-72973993 | None:intergenic | 30.0% | |
| CTGTTTCCATATGTTGTATT+GGG | + | chr4.4:72974597-72974616 | MS.gene48757:intron | 30.0% | |
| GAATCGGAACAAAAACTAAA+CGG | - | chr4.4:72973958-72973977 | None:intergenic | 30.0% | |
| GTAATTTATCTTTGTCTGAC+AGG | + | chr4.4:72976565-72976584 | MS.gene48757:intron | 30.0% | |
| GTTTCAAATGCTTTACCATA+TGG | - | chr4.4:72976819-72976838 | None:intergenic | 30.0% | |
| TACAGAAAATACGGATGAAA+TGG | - | chr4.4:72976915-72976934 | None:intergenic | 30.0% | |
| TGATATAAATGCTCTTGAAG+AGG | + | chr4.4:72977517-72977536 | MS.gene48757:CDS | 30.0% | |
| TGATGTTAACATTTGTTTCC+AGG | - | chr4.4:72975360-72975379 | None:intergenic | 30.0% | |
| TGGAAAAAGTAAAGAGAAGA+AGG | - | chr4.4:72976861-72976880 | None:intergenic | 30.0% | |
| TTACGGATAATTACAATCTG+AGG | - | chr4.4:72974075-72974094 | None:intergenic | 30.0% | |
| TTAGGTTTGATGAAGTGAAA+AGG | - | chr4.4:72973238-72973257 | None:intergenic | 30.0% | |
| TTCGAATTAAGTGTTAAGTC+AGG | + | chr4.4:72974862-72974881 | MS.gene48757:intron | 30.0% | |
| TTTAGTCCCAATACAACATA+TGG | - | chr4.4:72974606-72974625 | None:intergenic | 30.0% | |
| ! | AAAATCAAGTGGACTTTAAG+CGG | + | chr4.4:72976089-72976108 | MS.gene48757:intron | 30.0% |
| ! | AACAGGTTTGCTCTTATTAT+TGG | + | chr4.4:72975266-72975285 | MS.gene48757:intron | 30.0% |
| ! | AATTTTCCATTGGACTAAAC+CGG | - | chr4.4:72977629-72977648 | None:intergenic | 30.0% |
| ! | ATTTTCACTATCATATGCTG+CGG | + | chr4.4:72973778-72973797 | MS.gene48757:intron | 30.0% |
| ! | GAATATTCGCACTTTAGAAA+TGG | + | chr4.4:72973354-72973373 | MS.gene48757:CDS | 30.0% |
| ! | GATTCTTGTTATGAAATCCA+AGG | + | chr4.4:72976649-72976668 | MS.gene48757:CDS | 30.0% |
| ! | GGAAACAATCAGTAATTTTG+CGG | + | chr4.4:72977411-72977430 | MS.gene48757:intron | 30.0% |
| ! | GTTGCTTATGTACTTAGTTT+TGG | + | chr4.4:72976771-72976790 | MS.gene48757:intron | 30.0% |
| ! | TCTGTTTCAATCGATTCTTT+CGG | + | chr4.4:72976003-72976022 | MS.gene48757:intron | 30.0% |
| !! | ATGTTAGTTTGTACTACAAG+TGG | - | chr4.4:72974764-72974783 | None:intergenic | 30.0% |
| !! | GTATATTGAACTTAACTTGC+AGG | + | chr4.4:72976455-72976474 | MS.gene48757:intron | 30.0% |
| !!! | GATTTAGCTTTTCTCTTAAC+TGG | + | chr4.4:72977390-72977409 | MS.gene48757:intron | 30.0% |
| AACATCAGAAACGCATTACA+AGG | - | chr4.4:72975042-72975061 | None:intergenic | 35.0% | |
| AACATGTTGGACATAAGACT+TGG | - | chr4.4:72975748-72975767 | None:intergenic | 35.0% | |
| AGAGAAACTCAAGGTAAAAC+CGG | + | chr4.4:72977607-72977626 | MS.gene48757:intron | 35.0% | |
| AGCGTGCAATACAGAAAATA+CGG | - | chr4.4:72976924-72976943 | None:intergenic | 35.0% | |
| ATAGAAATCTTTGGCAGGAA+TGG | + | chr4.4:72975528-72975547 | MS.gene48757:intron | 35.0% | |
| ATATATCCATGATTGAAGGG+GGG | - | chr4.4:72977793-72977812 | None:intergenic | 35.0% | |
| CAACCTTGATCATGGTAAAT+AGG | - | chr4.4:72976967-72976986 | None:intergenic | 35.0% | |
| CAATTCAACTCAGTTTCTCT+CGG | - | chr4.4:72976034-72976053 | None:intergenic | 35.0% | |
| CAGAACTAAGAAGATTAGCA+TGG | + | chr4.4:72975553-72975572 | MS.gene48757:CDS | 35.0% | |
| CAGCACCTAAAAAAATCAAG+TGG | + | chr4.4:72976078-72976097 | MS.gene48757:intron | 35.0% | |
| CATAGACAATAGACAGTGTT+TGG | - | chr4.4:72973567-72973586 | None:intergenic | 35.0% | |
| CATAGACTATGGAGCTTATT+CGG | + | chr4.4:72975081-72975100 | MS.gene48757:intron | 35.0% | |
| CATATATCCATGATTGAAGG+GGG | - | chr4.4:72977794-72977813 | None:intergenic | 35.0% | |
| CATCCTATTTACCATGATCA+AGG | + | chr4.4:72976961-72976980 | MS.gene48757:intron | 35.0% | |
| CATGCACATATATAGAGAGA+TGG | + | chr4.4:72977240-72977259 | MS.gene48757:intron | 35.0% | |
| CATTAGTGTCAAACTGAGTT+GGG | + | chr4.4:72975711-72975730 | MS.gene48757:intron | 35.0% | |
| CTTCAGTTTCACATTGCAAA+TGG | - | chr4.4:72974322-72974341 | None:intergenic | 35.0% | |
| GAAAGAAGTAGAGAAACTCA+AGG | + | chr4.4:72977598-72977617 | MS.gene48757:CDS | 35.0% | |
| GAACAACTTAATCACTGAGT+TGG | + | chr4.4:72976601-72976620 | MS.gene48757:CDS | 35.0% | |
| GAATAAGCTCCATAGTCTAT+GGG | - | chr4.4:72975082-72975101 | None:intergenic | 35.0% | |
| GCATATATCCATGATTGAAG+GGG | - | chr4.4:72977795-72977814 | None:intergenic | 35.0% | |
| GGAAAAGATGAATAAGTCGA+AGG | + | chr4.4:72974179-72974198 | MS.gene48757:CDS | 35.0% | |
| GGTGAAAAAGGTAAAATACC+AGG | - | chr4.4:72976517-72976536 | None:intergenic | 35.0% | |
| GTGCAGAGAAAATGAGTTTA+AGG | + | chr4.4:72977171-72977190 | MS.gene48757:CDS | 35.0% | |
| TAATCAATGGTCCTTTCTAG+TGG | + | chr4.4:72974394-72974413 | MS.gene48757:intron | 35.0% | |
| TATAAAATGTGCTTGTGGTG+AGG | + | chr4.4:72977843-72977862 | MS.gene48757:CDS | 35.0% | |
| TATCATGCATTCCACTAGAA+AGG | - | chr4.4:72974408-72974427 | None:intergenic | 35.0% | |
| TATCTGCTAAACTATCAGAG+AGG | + | chr4.4:72975120-72975139 | MS.gene48757:CDS | 35.0% | |
| TATGAAATCCAAGGTTCTCA+TGG | + | chr4.4:72976658-72976677 | MS.gene48757:CDS | 35.0% | |
| TATTTGGATTCTCTCATGTG+TGG | - | chr4.4:72976148-72976167 | None:intergenic | 35.0% | |
| TGCATGAAATAATAGACACC+TGG | + | chr4.4:72975339-72975358 | MS.gene48757:intron | 35.0% | |
| TGCTGACCATGTATTTCAAA+TGG | - | chr4.4:72975410-72975429 | None:intergenic | 35.0% | |
| TGTTAAGTCAGGAGTCAATT+TGG | + | chr4.4:72974873-72974892 | MS.gene48757:intron | 35.0% | |
| TTCACATGATGTCCTTATGT+GGG | - | chr4.4:72976123-72976142 | None:intergenic | 35.0% | |
| TTCTTAGACTACAGACAGTT+CGG | - | chr4.4:72973700-72973719 | None:intergenic | 35.0% | |
| TTTCTCGCTATTATATGCAG+TGG | + | chr4.4:72973626-72973645 | MS.gene48757:intron | 35.0% | |
| ! | CATCTGTTCGACTTTTACAT+AGG | - | chr4.4:72977761-72977780 | None:intergenic | 35.0% |
| ! | CTGAAAACTGATTTCAGATG+CGG | + | chr4.4:72973285-72973304 | MS.gene48757:intron | 35.0% |
| ! | CTGGACCCAATAGATTTTAA+TGG | - | chr4.4:72976061-72976080 | None:intergenic | 35.0% |
| ! | CTGTTTCAATCGATTCTTTC+GGG | + | chr4.4:72976004-72976023 | MS.gene48757:intron | 35.0% |
| ! | TAGTGACTTGTCAGTAAAGA+TGG | - | chr4.4:72976241-72976260 | None:intergenic | 35.0% |
| ! | TTTGAAATACATGGTCAGCA+TGG | + | chr4.4:72975410-72975429 | MS.gene48757:intron | 35.0% |
| !! | TTAGAAATGGACATCGATTC+AGG | + | chr4.4:72973367-72973386 | MS.gene48757:CDS | 35.0% |
| !!! | AACCTGTTGCTTTTGGAATT+TGG | - | chr4.4:72975254-72975273 | None:intergenic | 35.0% |
| !!! | CACTTGATTTTTTTAGGTGC+TGG | - | chr4.4:72976080-72976099 | None:intergenic | 35.0% |
| !!! | GGATTATTTTTTTCCTCTCC+TGG | - | chr4.4:72975015-72975034 | None:intergenic | 35.0% |
| AAAGCGCAGATTGGTGAAAA+AGG | - | chr4.4:72976529-72976548 | None:intergenic | 40.0% | |
| AAGAAAAGAAAAGCCAGGAG+AGG | + | chr4.4:72974999-72975018 | MS.gene48757:intron | 40.0% | |
| ACATGGTCAGCATGGAAATT+TGG | + | chr4.4:72975418-72975437 | MS.gene48757:intron | 40.0% | |
| ACTTTACGCTCTCACATGAA+CGG | + | chr4.4:72973189-72973208 | MS.gene48757:CDS | 40.0% | |
| AGAAACGCATTACAAGGCAT+CGG | - | chr4.4:72975036-72975055 | None:intergenic | 40.0% | |
| AGTTGGATTCAGCTAAAGCA+AGG | + | chr4.4:72976618-72976637 | MS.gene48757:CDS | 40.0% | |
| ATACCAGGTTATCTGTAGCA+CGG | - | chr4.4:72976502-72976521 | None:intergenic | 40.0% | |
| CAACTTTGTAAAGCGCAGAT+TGG | - | chr4.4:72976538-72976557 | None:intergenic | 40.0% | |
| CAATCTGCGCTTTACAAAGT+TGG | + | chr4.4:72976536-72976555 | MS.gene48757:intron | 40.0% | |
| CATCTGCATTTGTTCTTCAG+CGG | - | chr4.4:72973332-72973351 | None:intergenic | 40.0% | |
| CCAGACTTACACAGGTAAAA+AGG | + | chr4.4:72974265-72974284 | MS.gene48757:intron | 40.0% | |
| CGAATAAGCTCCATAGTCTA+TGG | - | chr4.4:72975083-72975102 | None:intergenic | 40.0% | |
| CTGCATAGACTGCAAGTATT+CGG | - | chr4.4:72977579-72977598 | None:intergenic | 40.0% | |
| CTTATTCGGCAAGAGAAAGT+TGG | + | chr4.4:72975095-72975114 | MS.gene48757:CDS | 40.0% | |
| CTTCACATGATGTCCTTATG+TGG | - | chr4.4:72976124-72976143 | None:intergenic | 40.0% | |
| GAGAAAAGAAGTGAAGCTGA+AGG | + | chr4.4:72976308-72976327 | MS.gene48757:CDS | 40.0% | |
| GCAATGTGAAACTGAAGCAA+TGG | + | chr4.4:72974325-72974344 | MS.gene48757:intron | 40.0% | |
| GCATTAGTGTCAAACTGAGT+TGG | + | chr4.4:72975710-72975729 | MS.gene48757:intron | 40.0% | |
| GGTTCTCATGGACATTAACA+AGG | + | chr4.4:72976670-72976689 | MS.gene48757:CDS | 40.0% | |
| GTTAATGTCCATGAGAACCT+TGG | - | chr4.4:72976669-72976688 | None:intergenic | 40.0% | |
| TATCAGAGAGGAGGTAAATG+AGG | + | chr4.4:72975132-72975151 | MS.gene48757:intron | 40.0% | |
| TGATACATCCAGACTTACAC+AGG | + | chr4.4:72974257-72974276 | MS.gene48757:CDS | 40.0% | |
| TTCTTCAGCGGAAATCTTTG+CGG | - | chr4.4:72973320-72973339 | None:intergenic | 40.0% | |
| TTTCAGAGCCTACTATAGCA+AGG | + | chr4.4:72975210-72975229 | MS.gene48757:intron | 40.0% | |
| ! | AAAACTGATTTCAGATGCGG+AGG | + | chr4.4:72973288-72973307 | MS.gene48757:intron | 40.0% |
| ! | ATAGTTCGTTACCTTTGGAG+TGG | + | chr4.4:72975307-72975326 | MS.gene48757:intron | 40.0% |
| ! | CCTTTTTACCTGTGTAAGTC+TGG | - | chr4.4:72974268-72974287 | None:intergenic | 40.0% |
| ! | CTCAAATCCGCGTTCAATTT+TGG | + | chr4.4:72973396-72973415 | MS.gene48757:intron | 40.0% |
| ! | GAAATCTGAAATTGCGCAAG+TGG | + | chr4.4:72974146-72974165 | MS.gene48757:CDS | 40.0% |
| ! | GAGATCCTTATTTAGGACTC+TGG | + | chr4.4:72975628-72975647 | MS.gene48757:intron | 40.0% |
| ! | GTAAAACCGGTTTAGTCCAA+TGG | + | chr4.4:72977620-72977639 | MS.gene48757:intron | 40.0% |
| ! | GTATTTTCTGTATTGCACGC+TGG | + | chr4.4:72976923-72976942 | MS.gene48757:intron | 40.0% |
| ! | GTTGGACATAAGACTTGGTT+GGG | - | chr4.4:72975743-72975762 | None:intergenic | 40.0% |
| ! | TCTCTTGCTATCATATGCTG+CGG | + | chr4.4:72973492-72973511 | MS.gene48757:intron | 40.0% |
| ! | TGTTGGACATAAGACTTGGT+TGG | - | chr4.4:72975744-72975763 | None:intergenic | 40.0% |
| ! | TTGGACATAAGACTTGGTTG+GGG | - | chr4.4:72975742-72975761 | None:intergenic | 40.0% |
| !!! | AAGAGCAAACCTGTTGCTTT+TGG | - | chr4.4:72975261-72975280 | None:intergenic | 40.0% |
| !!! | ATATCAGCTGCTTTTAGCTC+AGG | - | chr4.4:72977503-72977522 | None:intergenic | 40.0% |
| !!! | GCTGCGGTTTAGTTTTTCTT+CGG | + | chr4.4:72973794-72973813 | MS.gene48757:intron | 40.0% |
| AAGAAGTGAAGCTGAAGGCA+TGG | + | chr4.4:72976313-72976332 | MS.gene48757:intron | 45.0% | |
| ACACAGTTGCAGTGTACTTG+AGG | + | chr4.4:72977886-72977905 | MS.gene48757:CDS | 45.0% | |
| ATAGACAGTGTTTGGATCCG+TGG | - | chr4.4:72973559-72973578 | None:intergenic | 45.0% | |
| CAAGTAGCTTATGTCAGAGC+TGG | - | chr4.4:72975840-72975859 | None:intergenic | 45.0% | |
| CCAATGCTTCAGCAAGTACA+GGG | + | chr4.4:72975980-72975999 | MS.gene48757:intron | 45.0% | |
| CTACTATAGCAAGGTTGCAG+AGG | + | chr4.4:72975219-72975238 | MS.gene48757:CDS | 45.0% | |
| CTCAGGCTAGATCAGTCATT+TGG | - | chr4.4:72977486-72977505 | None:intergenic | 45.0% | |
| CTGCTAAACTATCAGAGAGG+AGG | + | chr4.4:72975123-72975142 | MS.gene48757:CDS | 45.0% | |
| GCAGTGTTCAACCTTGATCA+TGG | - | chr4.4:72976975-72976994 | None:intergenic | 45.0% | |
| GGCCAAATTCCAAAAGCAAC+AGG | + | chr4.4:72975249-72975268 | MS.gene48757:CDS | 45.0% | |
| GGTGCATAGTTCGTTACCTT+TGG | + | chr4.4:72975302-72975321 | MS.gene48757:intron | 45.0% | |
| GGTGGATGTGAAGAAAAGAC+AGG | + | chr4.4:72974568-72974587 | MS.gene48757:intron | 45.0% | |
| TAACCGTGCTACAGATAACC+TGG | + | chr4.4:72976496-72976515 | MS.gene48757:CDS | 45.0% | |
| TAGTTTCCCCCCTTCAATCA+TGG | + | chr4.4:72977784-72977803 | MS.gene48757:intron | 45.0% | |
| TGAAATTGCGCAAGTGGTTG+AGG | + | chr4.4:72974152-72974171 | MS.gene48757:CDS | 45.0% | |
| ! | CCTGTACTTGCTGAAGCATT+GGG | - | chr4.4:72975982-72976001 | None:intergenic | 45.0% |
| ! | CTCTGCAACCTTGCTATAGT+AGG | - | chr4.4:72975221-72975240 | None:intergenic | 45.0% |
| ! | GCTCTTTTGTCTGACAAAGC+TGG | + | chr4.4:72977548-72977567 | MS.gene48757:CDS | 45.0% |
| !! | CTGTACTTGCTGAAGCATTG+GGG | - | chr4.4:72975981-72976000 | None:intergenic | 45.0% |
| !! | TGAAGCATTGGGGGTTAGAT+GGG | - | chr4.4:72975971-72975990 | None:intergenic | 45.0% |
| !! | TGTACTTGCTGAAGCATTGG+GGG | - | chr4.4:72975980-72975999 | None:intergenic | 45.0% |
| CAAGGTTGCAGAGGACATGA+GGG | + | chr4.4:72975228-72975247 | MS.gene48757:CDS | 50.0% | |
| CACGCTGGAATGTGTGCATT+GGG | + | chr4.4:72976938-72976957 | MS.gene48757:intron | 50.0% | |
| CCCAATGCTTCAGCAAGTAC+AGG | + | chr4.4:72975979-72975998 | MS.gene48757:intron | 50.0% | |
| GGGGATTGCACTATTGCAGA+TGG | - | chr4.4:72975951-72975970 | None:intergenic | 50.0% | |
| TGCGCAAGTGGTTGAGGATA+CGG | + | chr4.4:72974158-72974177 | MS.gene48757:CDS | 50.0% | |
| ! | CCAGAAAAAGCTTGCTTCGC+TGG | + | chr4.4:72974230-72974249 | MS.gene48757:CDS | 50.0% |
| ! | CCCTGTACTTGCTGAAGCAT+TGG | - | chr4.4:72975983-72976002 | None:intergenic | 50.0% |
| !! | CCAGCGAAGCAAGCTTTTTC+TGG | - | chr4.4:72974233-72974252 | None:intergenic | 50.0% |
| !! | CTGAAGCATTGGGGGTTAGA+TGG | - | chr4.4:72975972-72975991 | None:intergenic | 50.0% |
| !! | GAAGCATTGGGGGTTAGATG+GGG | - | chr4.4:72975970-72975989 | None:intergenic | 50.0% |
| !! | TTCGTTACCTTTGGAGTGGC+AGG | + | chr4.4:72975311-72975330 | MS.gene48757:intron | 50.0% |
| GCAAGGTTGCAGAGGACATG+AGG | + | chr4.4:72975227-72975246 | MS.gene48757:CDS | 55.0% | |
| GCACGCTGGAATGTGTGCAT+TGG | + | chr4.4:72976937-72976956 | MS.gene48757:intron | 55.0% | |
| GCGGCTAGATCTCCCACATA+AGG | + | chr4.4:72976108-72976127 | MS.gene48757:intron | 55.0% | |
| CATCGAGCCTGCCACTCCAA+AGG | - | chr4.4:72975321-72975340 | None:intergenic | 60.0% | |
| GCAGGGAGAACTCGTGCTGA+TGG | + | chr4.4:72976473-72976492 | MS.gene48757:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 72973162 | 72977906 | 72973162 | ID=MS.gene48757 |
| chr4.4 | mRNA | 72973162 | 72977906 | 72973162 | ID=MS.gene48757.t1;Parent=MS.gene48757 |
| chr4.4 | exon | 72973162 | 72973210 | 72973162 | ID=MS.gene48757.t1.exon1;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72973162 | 72973210 | 72973162 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| chr4.4 | exon | 72973302 | 72973388 | 72973302 | ID=MS.gene48757.t1.exon2;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72973302 | 72973388 | 72973302 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| chr4.4 | exon | 72974145 | 72974278 | 72974145 | ID=MS.gene48757.t1.exon3;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72974145 | 72974278 | 72974145 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| chr4.4 | exon | 72975086 | 72975144 | 72975086 | ID=MS.gene48757.t1.exon4;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72975086 | 72975144 | 72975086 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| chr4.4 | exon | 72975216 | 72975270 | 72975216 | ID=MS.gene48757.t1.exon5;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72975216 | 72975270 | 72975216 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| chr4.4 | exon | 72975545 | 72975595 | 72975545 | ID=MS.gene48757.t1.exon6;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72975545 | 72975595 | 72975545 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| chr4.4 | exon | 72976290 | 72976329 | 72976290 | ID=MS.gene48757.t1.exon7;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72976290 | 72976329 | 72976290 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| chr4.4 | exon | 72976477 | 72976517 | 72976477 | ID=MS.gene48757.t1.exon8;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72976477 | 72976517 | 72976477 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| chr4.4 | exon | 72976587 | 72976691 | 72976587 | ID=MS.gene48757.t1.exon9;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72976587 | 72976691 | 72976587 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| chr4.4 | exon | 72977145 | 72977192 | 72977145 | ID=MS.gene48757.t1.exon10;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72977145 | 72977192 | 72977145 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| chr4.4 | exon | 72977500 | 72977619 | 72977500 | ID=MS.gene48757.t1.exon11;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72977500 | 72977619 | 72977500 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| chr4.4 | exon | 72977829 | 72977906 | 72977829 | ID=MS.gene48757.t1.exon12;Parent=MS.gene48757.t1 |
| chr4.4 | CDS | 72977829 | 72977906 | 72977829 | ID=cds.MS.gene48757.t1;Parent=MS.gene48757.t1 |
| Gene Sequence |
| Protein sequence |
