Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48816.t1 | XP_013455181.1 | 90.7 | 215 | 20 | 0 | 1 | 215 | 1 | 215 | 1.40E-109 | 405.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48816.t1 | P07602 | 36.0 | 100 | 58 | 3 | 14 | 109 | 43 | 140 | 1.4e-09 | 64.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48816.t1 | A0A072UHH9 | 90.7 | 215 | 20 | 0 | 1 | 215 | 1 | 215 | 1.0e-109 | 405.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012660 | MS.gene48816 | PPI |
| MS.gene27206 | MS.gene48816 | PPI |
| MS.gene042166 | MS.gene48816 | PPI |
| MS.gene002990 | MS.gene48816 | PPI |
| MS.gene02356 | MS.gene48816 | PPI |
| MS.gene48816 | MS.gene68850 | PPI |
| MS.gene68947 | MS.gene48816 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48816.t1 | MTR_4g029040 | 90.698 | 215 | 20 | 0 | 1 | 215 | 1 | 215 | 8.32e-146 | 405 |
| MS.gene48816.t1 | MTR_7g072560 | 49.107 | 224 | 102 | 2 | 1 | 212 | 1 | 224 | 5.44e-79 | 236 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48816.t1 | AT3G51730 | 44.724 | 199 | 105 | 2 | 1 | 194 | 1 | 199 | 3.32e-58 | 183 |
| MS.gene48816.t1 | AT5G01800 | 39.153 | 189 | 103 | 3 | 16 | 195 | 15 | 200 | 7.34e-52 | 167 |
Find 39 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATACCGTTGCGGAATTAT+TGG | 0.223574 | 4.4:+73814435 | MS.gene48816:CDS |
| GAGATTATGGAAAGCAAAAT+AGG | 0.235192 | 4.4:+73812332 | None:intergenic |
| CTTCCATGATTGCAGCTTCC+TGG | 0.235209 | 4.4:-73815708 | None:intergenic |
| ACTAAAGGCATGCAATAATA+TGG | 0.295458 | 4.4:+73814657 | MS.gene48816:CDS |
| TGCATATATCTGCTGTCTTC+AGG | 0.324490 | 4.4:-73815648 | None:intergenic |
| AAATCACTAACCTTAGTTTC+AGG | 0.327947 | 4.4:-73814472 | None:intergenic |
| GTTGAATGATCCTGAAACTA+AGG | 0.370785 | 4.4:+73814462 | MS.gene48816:CDS |
| AAGATTTCTTCACAGGTTCA+TGG | 0.418003 | 4.4:+73814391 | MS.gene48816:CDS |
| TCACAAATTGAACATGCATC+TGG | 0.423663 | 4.4:-73813714 | None:intergenic |
| TTCTTCCACTATTGTTAGCC+AGG | 0.431054 | 4.4:+73815690 | MS.gene48816:CDS |
| GTCTGCAAAGATTTCTTCAC+AGG | 0.444344 | 4.4:+73814384 | MS.gene48816:CDS |
| AGATTATGGAAAGCAAAATA+GGG | 0.475417 | 4.4:+73812333 | None:intergenic |
| AAAATAGCTCTAATGAAGCC+TGG | 0.494193 | 4.4:+73814331 | MS.gene48816:CDS |
| AACAATAGTGGAAGAAGGGC+AGG | 0.499361 | 4.4:-73815683 | None:intergenic |
| TCTTCCGTCTTTCAGCGAGC+AGG | 0.501700 | 4.4:+73813824 | MS.gene48816:CDS |
| TAGCCAGGAAGCTGCAATCA+TGG | 0.501752 | 4.4:+73815705 | MS.gene48816:CDS |
| CATTGTACAGTGCTTAGAAT+TGG | 0.503629 | 4.4:+73814279 | MS.gene48816:intron |
| TGTACAGTGCTTAGAATTGG+TGG | 0.507359 | 4.4:+73814282 | MS.gene48816:intron |
| AGCTTCCTGGCTAACAATAG+TGG | 0.513011 | 4.4:-73815695 | None:intergenic |
| TCTGCATTGACTAGAATCAA+TGG | 0.518668 | 4.4:-73815619 | None:intergenic |
| TGAGATACTTGATTATCTAA+AGG | 0.525760 | 4.4:+73813749 | MS.gene48816:CDS |
| TTGTTTATTTACAGTGCAAG+AGG | 0.527287 | 4.4:+73815578 | MS.gene48816:intron |
| TGGCTAACAATAGTGGAAGA+AGG | 0.530354 | 4.4:-73815688 | None:intergenic |
| TAATATGGAGAAGTATAAGA+AGG | 0.539882 | 4.4:+73814672 | MS.gene48816:CDS |
| GATAATTCAGAAACTACTAA+AGG | 0.545272 | 4.4:+73814642 | MS.gene48816:CDS |
| GGCTAACAATAGTGGAAGAA+GGG | 0.565538 | 4.4:-73815687 | None:intergenic |
| CAGGTTCATGGAAATAGTTG+TGG | 0.583323 | 4.4:+73814403 | MS.gene48816:CDS |
| TCTTTGCAGACTCGCAAAGG+TGG | 0.584711 | 4.4:-73814372 | None:intergenic |
| GCAAGAGAGTTTGCAAACCC+TGG | 0.584783 | 4.4:+73812398 | MS.gene48816:CDS |
| AAATCTTTGCAGACTCGCAA+AGG | 0.587749 | 4.4:-73814375 | None:intergenic |
| TTATTTACAGTGCAAGAGGA+TGG | 0.587964 | 4.4:+73815582 | MS.gene48816:intron |
| TCTAAAGGATAACAAGACTC+AGG | 0.588548 | 4.4:+73813764 | MS.gene48816:CDS |
| TATGGAGAAGTATAAGAAGG+AGG | 0.591525 | 4.4:+73814675 | MS.gene48816:CDS |
| AGATGCATGTTCAATTTGTG+AGG | 0.595452 | 4.4:+73813716 | MS.gene48816:CDS |
| CAAACCTGCTCGCTGAAAGA+CGG | 0.602257 | 4.4:-73813828 | None:intergenic |
| CGCTGAAAGACGGAAGATGA+CGG | 0.614204 | 4.4:-73813818 | None:intergenic |
| CTCAACCAATAATTCCGCAA+CGG | 0.648292 | 4.4:-73814440 | None:intergenic |
| GATGACGGCAAGTATTGTGA+AGG | 0.651523 | 4.4:-73813803 | None:intergenic |
| GATTAAGAGTCAGAAAACAA+TGG | 0.672126 | 4.4:-73815736 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAATTACTGACA+AGG | - | chr4.4:73814876-73814895 | None:intergenic | 15.0% |
| !! | AAATGACATTTAAGAATAAA+AGG | - | chr4.4:73814751-73814770 | None:intergenic | 15.0% |
| !! | AAATGTACATATGATATTAT+AGG | - | chr4.4:73813584-73813603 | None:intergenic | 15.0% |
| !! | AATGACATTTAAGAATAAAA+GGG | - | chr4.4:73814750-73814769 | None:intergenic | 15.0% |
| !! | ATAAACAAGAAAATAATTGT+TGG | + | chr4.4:73812559-73812578 | MS.gene48816:intron | 15.0% |
| !! | ATCTATACCTATATATAAAA+GGG | + | chr4.4:73813958-73813977 | MS.gene48816:intron | 15.0% |
| !! | TAAAAAAAAGAGAAAACAAA+AGG | - | chr4.4:73814719-73814738 | None:intergenic | 15.0% |
| !! | TAATGAATTGAATAAGAATA+TGG | - | chr4.4:73814808-73814827 | None:intergenic | 15.0% |
| !! | TATCTATACCTATATATAAA+AGG | + | chr4.4:73813957-73813976 | MS.gene48816:intron | 15.0% |
| !! | TGTTTCAATTCAAAAATATT+TGG | - | chr4.4:73813206-73813225 | None:intergenic | 15.0% |
| !!! | TCAAAAATATTTGGATTTTT+TGG | - | chr4.4:73813197-73813216 | None:intergenic | 15.0% |
| !! | AAAATAACTACTTTCTGAAT+TGG | + | chr4.4:73814554-73814573 | MS.gene48816:intron | 20.0% |
| !! | AATTCATACATCTACATTAT+AGG | - | chr4.4:73813520-73813539 | None:intergenic | 20.0% |
| !! | AATTTGGACTAATTTAATCA+AGG | - | chr4.4:73813021-73813040 | None:intergenic | 20.0% |
| !! | ATAGCTTATGAAAGTAAAAT+AGG | + | chr4.4:73815089-73815108 | MS.gene48816:intron | 20.0% |
| !! | ATGGTTTAATTGGTTAAAAT+AGG | - | chr4.4:73815399-73815418 | None:intergenic | 20.0% |
| !! | ATTTATGTAATCTTAGAAGA+TGG | + | chr4.4:73812494-73812513 | MS.gene48816:intron | 20.0% |
| !! | CAAATATTTATTCGTTGTAT+TGG | - | chr4.4:73815473-73815492 | None:intergenic | 20.0% |
| !! | GTTTAAATGAAGAGTAAAAT+CGG | - | chr4.4:73814015-73814034 | None:intergenic | 20.0% |
| !! | TGTAAAGTACAAAGATTAAT+AGG | + | chr4.4:73812517-73812536 | MS.gene48816:intron | 20.0% |
| !!! | ACTTAATTTTATGTAACCAA+AGG | - | chr4.4:73814784-73814803 | None:intergenic | 20.0% |
| !!! | ATATGCAATTTTCATTAGTA+AGG | + | chr4.4:73813089-73813108 | MS.gene48816:intron | 20.0% |
| !!! | ATTTTCTTGTTTATCATTGA+TGG | - | chr4.4:73812553-73812572 | None:intergenic | 20.0% |
| !!! | CTTTTATTTCTGATTTTGTT+GGG | + | chr4.4:73812356-73812375 | MS.gene48816:CDS | 20.0% |
| !!! | TAATTTAATCAAGGTTCTAA+GGG | - | chr4.4:73813012-73813031 | None:intergenic | 20.0% |
| ! | AAAATAGGCAACAAATAAAC+CGG | - | chr4.4:73815384-73815403 | None:intergenic | 25.0% |
| ! | AAATAAACTTCAAACCATCT+AGG | - | chr4.4:73812474-73812493 | None:intergenic | 25.0% |
| ! | AAGATAAACCTATTGAGAAA+AGG | + | chr4.4:73813159-73813178 | MS.gene48816:intron | 25.0% |
| ! | AAGCTATTCATGATAGATTA+CGG | - | chr4.4:73815076-73815095 | None:intergenic | 25.0% |
| ! | ACAGAGAAGAGTTAAAAATA+AGG | - | chr4.4:73814244-73814263 | None:intergenic | 25.0% |
| ! | AGTAAAATCGGAAGAAAAAA+TGG | - | chr4.4:73814003-73814022 | None:intergenic | 25.0% |
| ! | ATTACAATGATTATCATGGA+AGG | + | chr4.4:73814843-73814862 | MS.gene48816:intron | 25.0% |
| ! | CGAATAAATATTTGCAGTTA+CGG | + | chr4.4:73815479-73815498 | MS.gene48816:intron | 25.0% |
| ! | CTAATTTAATCAAGGTTCTA+AGG | - | chr4.4:73813013-73813032 | None:intergenic | 25.0% |
| ! | CTTGATTACAATGATTATCA+TGG | + | chr4.4:73814839-73814858 | MS.gene48816:intron | 25.0% |
| ! | GATAATTCAGAAACTACTAA+AGG | + | chr4.4:73814642-73814661 | MS.gene48816:CDS | 25.0% |
| ! | TAACATAAGAAGTTGAGTTA+GGG | + | chr4.4:73812724-73812743 | MS.gene48816:intron | 25.0% |
| ! | TATCAAATATCAACCATAGA+AGG | - | chr4.4:73813438-73813457 | None:intergenic | 25.0% |
| ! | TATTAAGGAAGGATAATGTA+CGG | - | chr4.4:73814503-73814522 | None:intergenic | 25.0% |
| ! | TGAGATACTTGATTATCTAA+AGG | + | chr4.4:73813749-73813768 | MS.gene48816:CDS | 25.0% |
| ! | TTAACATAAGAAGTTGAGTT+AGG | + | chr4.4:73812723-73812742 | MS.gene48816:intron | 25.0% |
| ! | TTAGATAGAATGAGTTTGAA+TGG | - | chr4.4:73812806-73812825 | None:intergenic | 25.0% |
| ! | TTCTGATTGTATGATATATC+AGG | + | chr4.4:73813342-73813361 | MS.gene48816:intron | 25.0% |
| !! | GAAGTTAACAAATTTTGCAT+TGG | - | chr4.4:73813491-73813510 | None:intergenic | 25.0% |
| !! | TAATATGGAGAAGTATAAGA+AGG | + | chr4.4:73814672-73814691 | MS.gene48816:CDS | 25.0% |
| !! | TAGATTACGGAAACAAATTT+TGG | - | chr4.4:73815063-73815082 | None:intergenic | 25.0% |
| !! | TCTATGGTTGATATTTGATA+TGG | + | chr4.4:73813438-73813457 | MS.gene48816:intron | 25.0% |
| !! | TTTAAACCAGTGTTGTTAAA+TGG | + | chr4.4:73814028-73814047 | MS.gene48816:intron | 25.0% |
| !!! | AAGCTACACTTTTTTTTTGA+AGG | - | chr4.4:73813293-73813312 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTGAAGGAAAAC+CGG | - | chr4.4:73813285-73813304 | None:intergenic | 25.0% |
| !!! | GCTATTTTTGAGAAGAAAAT+CGG | - | chr4.4:73814319-73814338 | None:intergenic | 25.0% |
| !!! | GCTTTTATTTCTGATTTTGT+TGG | + | chr4.4:73812355-73812374 | MS.gene48816:CDS | 25.0% |
| !!! | GTATTGGTCAATGTTTTAAA+AGG | - | chr4.4:73815457-73815476 | None:intergenic | 25.0% |
| AAATCACTAACCTTAGTTTC+AGG | - | chr4.4:73814475-73814494 | None:intergenic | 30.0% | |
| AAATTAGTCCAAATTACGCT+CGG | + | chr4.4:73813026-73813045 | MS.gene48816:intron | 30.0% | |
| AACAAAATAGAATCAAGCGA+AGG | - | chr4.4:73813857-73813876 | None:intergenic | 30.0% | |
| ACATCTACATTATAGGCTAA+GGG | - | chr4.4:73813513-73813532 | None:intergenic | 30.0% | |
| AGTAAAATAGGAACGACTTT+CGG | + | chr4.4:73815101-73815120 | MS.gene48816:intron | 30.0% | |
| AGTTAACTAGTTAAAGTTCC+AGG | - | chr4.4:73814964-73814983 | None:intergenic | 30.0% | |
| ATTTGCAAATTACACATGAG+AGG | - | chr4.4:73812759-73812778 | None:intergenic | 30.0% | |
| CAAGCGTTTATACTATAAGT+TGG | + | chr4.4:73815165-73815184 | MS.gene48816:intron | 30.0% | |
| CATAAGAACAGGTAACATAT+CGG | - | chr4.4:73813240-73813259 | None:intergenic | 30.0% | |
| CATTATCCTTCCTTAATATG+AGG | + | chr4.4:73814505-73814524 | MS.gene48816:intron | 30.0% | |
| GCATTCTAAACTAGCATATA+GGG | + | chr4.4:73812581-73812600 | MS.gene48816:intron | 30.0% | |
| GCTTAGGCCAATAATATATA+GGG | + | chr4.4:73812689-73812708 | MS.gene48816:intron | 30.0% | |
| GTATTCAATTGTTCCTTCTA+TGG | + | chr4.4:73813422-73813441 | MS.gene48816:intron | 30.0% | |
| GTTAACTAGTTAAAGTTCCA+GGG | - | chr4.4:73814963-73814982 | None:intergenic | 30.0% | |
| GTTGCAATGACATGTTTATA+TGG | + | chr4.4:73814126-73814145 | MS.gene48816:intron | 30.0% | |
| TAAACGCTTGTGCATATATT+AGG | - | chr4.4:73815155-73815174 | None:intergenic | 30.0% | |
| TAAATTGATGTTGTCGATGT+CGG | - | chr4.4:73814174-73814193 | None:intergenic | 30.0% | |
| TACATCTACATTATAGGCTA+AGG | - | chr4.4:73813514-73813533 | None:intergenic | 30.0% | |
| TATAGTGTGTAGATTTGTCA+AGG | + | chr4.4:73814201-73814220 | MS.gene48816:intron | 30.0% | |
| TATGAGTAATTTATCCTCGT+GGG | - | chr4.4:73815033-73815052 | None:intergenic | 30.0% | |
| TGCTTAGGCCAATAATATAT+AGG | + | chr4.4:73812688-73812707 | MS.gene48816:intron | 30.0% | |
| TTATGAGTAATTTATCCTCG+TGG | - | chr4.4:73815034-73815053 | None:intergenic | 30.0% | |
| TTCTCTTTATGAATTGTGAG+AGG | + | chr4.4:73812839-73812858 | MS.gene48816:intron | 30.0% | |
| TTGTTTATTTACAGTGCAAG+AGG | + | chr4.4:73815578-73815597 | MS.gene48816:intron | 30.0% | |
| TTTCTCGCCCTATATATTAT+TGG | - | chr4.4:73812699-73812718 | None:intergenic | 30.0% | |
| TTTGCAAATTACACATGAGA+GGG | - | chr4.4:73812758-73812777 | None:intergenic | 30.0% | |
| ! | ACTAAAGGCATGCAATAATA+TGG | + | chr4.4:73814657-73814676 | MS.gene48816:CDS | 30.0% |
| ! | ATATGGTTCTGTTCATTTGA+TGG | + | chr4.4:73813455-73813474 | MS.gene48816:intron | 30.0% |
| ! | TATGGTTCTGTTCATTTGAT+GGG | + | chr4.4:73813456-73813475 | MS.gene48816:intron | 30.0% |
| ! | TCATTTTGCATGAAATCCTT+TGG | + | chr4.4:73814765-73814784 | MS.gene48816:intron | 30.0% |
| ! | TTCGGTCAGATTTAAAACAT+TGG | - | chr4.4:73815264-73815283 | None:intergenic | 30.0% |
| ! | TTGGCATCCCTTTTATATAT+AGG | - | chr4.4:73813968-73813987 | None:intergenic | 30.0% |
| ! | TTTTCTCCATCACATTCTTT+TGG | - | chr4.4:73813137-73813156 | None:intergenic | 30.0% |
| !! | ATTTTAATCCGAGCGTAATT+TGG | - | chr4.4:73813037-73813056 | None:intergenic | 30.0% |
| !! | TCTTTTCTTTTTTGCCTAGA+TGG | + | chr4.4:73812457-73812476 | MS.gene48816:intron | 30.0% |
| !! | TTTTGGCTACTTCACTTATT+TGG | - | chr4.4:73813120-73813139 | None:intergenic | 30.0% |
| !!! | ATGTTAGTTTTCTTCTTGCT+AGG | + | chr4.4:73814930-73814949 | MS.gene48816:intron | 30.0% |
| !!! | TCGACTTTTTTTAGTATAGC+CGG | + | chr4.4:73813263-73813282 | MS.gene48816:intron | 30.0% |
| AAAATGGCTACACCAAAACT+TGG | - | chr4.4:73813987-73814006 | None:intergenic | 35.0% | |
| AAACATGTCATTGCAACCTA+TGG | - | chr4.4:73814123-73814142 | None:intergenic | 35.0% | |
| AAAGTCGACTACATAAGAAC+AGG | - | chr4.4:73813251-73813270 | None:intergenic | 35.0% | |
| AAGATTTCTTCACAGGTTCA+TGG | + | chr4.4:73814391-73814410 | MS.gene48816:CDS | 35.0% | |
| AAGTAGCCAAAAGAATGTGA+TGG | + | chr4.4:73813128-73813147 | MS.gene48816:intron | 35.0% | |
| AATGCTCCTCATATTAAGGA+AGG | - | chr4.4:73814514-73814533 | None:intergenic | 35.0% | |
| ACAGAATCCAGGTTATATAC+AGG | - | chr4.4:73813322-73813341 | None:intergenic | 35.0% | |
| ACCCTGGTAATTAACAATGT+TGG | + | chr4.4:73812414-73812433 | MS.gene48816:intron | 35.0% | |
| AGATGCATGTTCAATTTGTG+AGG | + | chr4.4:73813716-73813735 | MS.gene48816:CDS | 35.0% | |
| AGCCAACATTGTTAATTACC+AGG | - | chr4.4:73812419-73812438 | None:intergenic | 35.0% | |
| AGGTAACATATCGGTGAAAA+GGG | - | chr4.4:73813231-73813250 | None:intergenic | 35.0% | |
| ATACAAACCAGCGAATTTAC+TGG | - | chr4.4:73815287-73815306 | None:intergenic | 35.0% | |
| ATCTTCTTACCATTGTGCTT+AGG | + | chr4.4:73812673-73812692 | MS.gene48816:intron | 35.0% | |
| ATTTCGCCATTTAACAACAC+TGG | - | chr4.4:73814037-73814056 | None:intergenic | 35.0% | |
| CAATTGAATACATGAACCTC+TGG | - | chr4.4:73813413-73813432 | None:intergenic | 35.0% | |
| CAGAATCCAGGTTATATACA+GGG | - | chr4.4:73813321-73813340 | None:intergenic | 35.0% | |
| CATTGTACAGTGCTTAGAAT+TGG | + | chr4.4:73814279-73814298 | MS.gene48816:intron | 35.0% | |
| CTCTAATGCTCCTCATATTA+AGG | - | chr4.4:73814518-73814537 | None:intergenic | 35.0% | |
| CTGTTTCCAAGATTTAAACC+TGG | + | chr4.4:73812939-73812958 | MS.gene48816:intron | 35.0% | |
| CTTCTGAGTCATGGTTTAAT+TGG | - | chr4.4:73815409-73815428 | None:intergenic | 35.0% | |
| GCCAACATTGTTAATTACCA+GGG | - | chr4.4:73812418-73812437 | None:intergenic | 35.0% | |
| GGCATTCTAAACTAGCATAT+AGG | + | chr4.4:73812580-73812599 | MS.gene48816:intron | 35.0% | |
| GTTGAATGATCCTGAAACTA+AGG | + | chr4.4:73814462-73814481 | MS.gene48816:CDS | 35.0% | |
| TACAATCAGAAACAGAATCC+AGG | - | chr4.4:73813333-73813352 | None:intergenic | 35.0% | |
| TCAAGGAATGAGAACTTATC+AGG | + | chr4.4:73814218-73814237 | MS.gene48816:intron | 35.0% | |
| TCACAAATTGAACATGCATC+TGG | - | chr4.4:73813717-73813736 | None:intergenic | 35.0% | |
| TCTAAAGGATAACAAGACTC+AGG | + | chr4.4:73813764-73813783 | MS.gene48816:CDS | 35.0% | |
| TCTAAGCAACTCAATCAACT+AGG | - | chr4.4:73813383-73813402 | None:intergenic | 35.0% | |
| TCTGTTGAACTGGATTGAAT+CGG | + | chr4.4:73815327-73815346 | MS.gene48816:intron | 35.0% | |
| TTATTTACAGTGCAAGAGGA+TGG | + | chr4.4:73815582-73815601 | MS.gene48816:intron | 35.0% | |
| TTCTAAACTAGCATATAGGG+CGG | + | chr4.4:73812584-73812603 | MS.gene48816:intron | 35.0% | |
| TTGGAAACAGTCTCTTTGTT+TGG | - | chr4.4:73812929-73812948 | None:intergenic | 35.0% | |
| ! | ATAAAAGGGATGCCAAGTTT+TGG | + | chr4.4:73813972-73813991 | MS.gene48816:intron | 35.0% |
| ! | TAGCACAATGGTAAGGTTTT+TGG | - | chr4.4:73812982-73813001 | None:intergenic | 35.0% |
| ! | TATGGAGAAGTATAAGAAGG+AGG | + | chr4.4:73814675-73814694 | MS.gene48816:CDS | 35.0% |
| ! | TATTATTGGCCTAAGCACAA+TGG | - | chr4.4:73812685-73812704 | None:intergenic | 35.0% |
| ! | TCAGAATGCCTTTTCTCAAT+AGG | - | chr4.4:73813170-73813189 | None:intergenic | 35.0% |
| ! | TTGCTTAGATTGATTTCCAG+AGG | + | chr4.4:73813394-73813413 | MS.gene48816:intron | 35.0% |
| !! | AAAATAGCTCTAATGAAGCC+TGG | + | chr4.4:73814331-73814350 | MS.gene48816:CDS | 35.0% |
| !! | AGGCGAAAGTACTTAAGAAA+CGG | - | chr4.4:73813564-73813583 | None:intergenic | 35.0% |
| !! | TCTGCATTGACTAGAATCAA+TGG | - | chr4.4:73815622-73815641 | None:intergenic | 35.0% |
| !! | TTAATCAAGGTTCTAAGGGT+GGG | - | chr4.4:73813008-73813027 | None:intergenic | 35.0% |
| !! | TTGAGAAAAGGCATTCTGAA+AGG | + | chr4.4:73813171-73813190 | MS.gene48816:intron | 35.0% |
| !! | TTTAATCAAGGTTCTAAGGG+TGG | - | chr4.4:73813009-73813028 | None:intergenic | 35.0% |
| AAATCTTTGCAGACTCGCAA+AGG | - | chr4.4:73814378-73814397 | None:intergenic | 40.0% | |
| AGATACCGTTGCGGAATTAT+TGG | + | chr4.4:73814435-73814454 | MS.gene48816:CDS | 40.0% | |
| AGTAATTTATCCTCGTGGGT+GGG | - | chr4.4:73815029-73815048 | None:intergenic | 40.0% | |
| ATTTGCAGTTACGGACATGA+AGG | + | chr4.4:73815488-73815507 | MS.gene48816:intron | 40.0% | |
| CAATCAGAGAGATTGTGTCT+AGG | + | chr4.4:73812646-73812665 | MS.gene48816:intron | 40.0% | |
| CAGGTAACATATCGGTGAAA+AGG | - | chr4.4:73813232-73813251 | None:intergenic | 40.0% | |
| CAGGTTCATGGAAATAGTTG+TGG | + | chr4.4:73814403-73814422 | MS.gene48816:CDS | 40.0% | |
| CATGTGAAACTTCTGAGTCA+TGG | - | chr4.4:73815418-73815437 | None:intergenic | 40.0% | |
| CTAGACACAATCTCTCTGAT+TGG | - | chr4.4:73812648-73812667 | None:intergenic | 40.0% | |
| CTCAACCAATAATTCCGCAA+CGG | - | chr4.4:73814443-73814462 | None:intergenic | 40.0% | |
| CTGACATAGGCAATTTGTGA+AGG | + | chr4.4:73814078-73814097 | MS.gene48816:intron | 40.0% | |
| CTGTTGAACTGGATTGAATC+GGG | + | chr4.4:73815328-73815347 | MS.gene48816:intron | 40.0% | |
| GCTCGGATTAAAATCTGATG+CGG | + | chr4.4:73813043-73813062 | MS.gene48816:intron | 40.0% | |
| GTCTGCAAAGATTTCTTCAC+AGG | + | chr4.4:73814384-73814403 | MS.gene48816:CDS | 40.0% | |
| TAGAGAAGTAGTAGCTCACT+TGG | - | chr4.4:73815222-73815241 | None:intergenic | 40.0% | |
| TGCATATATCTGCTGTCTTC+AGG | - | chr4.4:73815651-73815670 | None:intergenic | 40.0% | |
| TGTACAGTGCTTAGAATTGG+TGG | + | chr4.4:73814282-73814301 | MS.gene48816:intron | 40.0% | |
| TGTTAAATGGCGAAATGACG+AGG | + | chr4.4:73814041-73814060 | MS.gene48816:intron | 40.0% | |
| TGTTGAACTGGATTGAATCG+GGG | + | chr4.4:73815329-73815348 | MS.gene48816:intron | 40.0% | |
| TTCTTCCACTATTGTTAGCC+AGG | + | chr4.4:73815690-73815709 | MS.gene48816:CDS | 40.0% | |
| TTTCAGCCCTGTATATAACC+TGG | + | chr4.4:73813312-73813331 | MS.gene48816:intron | 40.0% | |
| ! | AACCAGCGAATTTACTGGTT+CGG | - | chr4.4:73815282-73815301 | None:intergenic | 40.0% |
| ! | CTTTTGCAAAGATACCGTTG+CGG | + | chr4.4:73814426-73814445 | MS.gene48816:CDS | 40.0% |
| ! | GGCTAACAATAGTGGAAGAA+GGG | - | chr4.4:73815690-73815709 | None:intergenic | 40.0% |
| ! | TGGCTAACAATAGTGGAAGA+AGG | - | chr4.4:73815691-73815710 | None:intergenic | 40.0% |
| !! | GGCGAAAGTACTTAAGAAAC+GGG | - | chr4.4:73813563-73813582 | None:intergenic | 40.0% |
| !!! | AAGAGGATGGTTTTCGAGTA+TGG | + | chr4.4:73815595-73815614 | MS.gene48816:CDS | 40.0% |
| !!! | GTTTTTGGTTTGTAACCTCG+AGG | - | chr4.4:73812967-73812986 | None:intergenic | 40.0% |
| AAATGGCGAAATGACGAGGT+GGG | + | chr4.4:73814045-73814064 | MS.gene48816:intron | 45.0% | |
| AACAGAGCTGCAGTATAACC+GGG | - | chr4.4:73815313-73815332 | None:intergenic | 45.0% | |
| AGCTTCCTGGCTAACAATAG+TGG | - | chr4.4:73815698-73815717 | None:intergenic | 45.0% | |
| ATACTGCAGCTCTGTTGAAC+TGG | + | chr4.4:73815317-73815336 | MS.gene48816:intron | 45.0% | |
| ATGATCCCTTCATGTGAGGT+TGG | + | chr4.4:73812899-73812918 | MS.gene48816:intron | 45.0% | |
| CAACAGAGCTGCAGTATAAC+CGG | - | chr4.4:73815314-73815333 | None:intergenic | 45.0% | |
| GAGTAATTTATCCTCGTGGG+TGG | - | chr4.4:73815030-73815049 | None:intergenic | 45.0% | |
| TAAATGGCGAAATGACGAGG+TGG | + | chr4.4:73814044-73814063 | MS.gene48816:intron | 45.0% | |
| TCAACCAACCCTGGTTGAAA+AGG | - | chr4.4:73815360-73815379 | None:intergenic | 45.0% | |
| TGAGATGATCCCTTCATGTG+AGG | + | chr4.4:73812895-73812914 | MS.gene48816:intron | 45.0% | |
| TGATCCCTTCATGTGAGGTT+GGG | + | chr4.4:73812900-73812919 | MS.gene48816:intron | 45.0% | |
| TTGATGTTGTCGATGTCGGA+TGG | - | chr4.4:73814170-73814189 | None:intergenic | 45.0% | |
| TTGTGAAGGAATGCCCACAA+TGG | + | chr4.4:73814092-73814111 | MS.gene48816:intron | 45.0% | |
| ! | AACAATAGTGGAAGAAGGGC+AGG | - | chr4.4:73815686-73815705 | None:intergenic | 45.0% |
| ! | AACTTTTCGCAGAGTTCTCC+AGG | - | chr4.4:73814352-73814371 | None:intergenic | 45.0% |
| ! | GAGGTGCCAGGTTTAAATCT+TGG | - | chr4.4:73812948-73812967 | None:intergenic | 45.0% |
| ! | GATGACGGCAAGTATTGTGA+AGG | - | chr4.4:73813806-73813825 | None:intergenic | 45.0% |
| ! | TGAACCTTTTCAACCAGGGT+TGG | + | chr4.4:73815353-73815372 | MS.gene48816:intron | 45.0% |
| !! | GAAATGACGAGGTGGGTTTT+GGG | + | chr4.4:73814052-73814071 | MS.gene48816:intron | 45.0% |
| !! | TTCGCTGGTTTGTATAACCC+CGG | + | chr4.4:73815292-73815311 | MS.gene48816:intron | 45.0% |
| !!! | GATTTTGTTGGGTGCTGCTT+GGG | + | chr4.4:73812367-73812386 | MS.gene48816:CDS | 45.0% |
| !!! | GGGTTTTGGGTAACTGACAT+AGG | + | chr4.4:73814065-73814084 | MS.gene48816:intron | 45.0% |
| !!! | TGATTTTGTTGGGTGCTGCT+TGG | + | chr4.4:73812366-73812385 | MS.gene48816:CDS | 45.0% |
| AATTCCGCTAGGTGAGGTCA+GGG | + | chr4.4:73812620-73812639 | MS.gene48816:intron | 50.0% | |
| AATTTATCCTCGTGGGTGGG+TGG | - | chr4.4:73815026-73815045 | None:intergenic | 50.0% | |
| ACAGAGCTGCAGTATAACCG+GGG | - | chr4.4:73815312-73815331 | None:intergenic | 50.0% | |
| AGAAGTTGAGTTAGGGCGAG+TGG | + | chr4.4:73812731-73812750 | MS.gene48816:intron | 50.0% | |
| ATTTATCCTCGTGGGTGGGT+GGG | - | chr4.4:73815025-73815044 | None:intergenic | 50.0% | |
| CAAACCTGCTCGCTGAAAGA+CGG | - | chr4.4:73813831-73813850 | None:intergenic | 50.0% | |
| CAATGCACGAGAATTCCGCT+AGG | + | chr4.4:73812609-73812628 | MS.gene48816:intron | 50.0% | |
| CGCTGAAAGACGGAAGATGA+CGG | - | chr4.4:73813821-73813840 | None:intergenic | 50.0% | |
| CTTCCATGATTGCAGCTTCC+TGG | - | chr4.4:73815711-73815730 | None:intergenic | 50.0% | |
| GACCGAACCAGTAAATTCGC+TGG | + | chr4.4:73815277-73815296 | MS.gene48816:intron | 50.0% | |
| GATCCCTTCATGTGAGGTTG+GGG | + | chr4.4:73812901-73812920 | MS.gene48816:intron | 50.0% | |
| GATTTAAACCTGGCACCTCG+AGG | + | chr4.4:73812949-73812968 | MS.gene48816:intron | 50.0% | |
| GCAAGAGAGTTTGCAAACCC+TGG | + | chr4.4:73812398-73812417 | MS.gene48816:CDS | 50.0% | |
| TAGCCAGGAAGCTGCAATCA+TGG | + | chr4.4:73815705-73815724 | MS.gene48816:CDS | 50.0% | |
| TAGTAGCTCACTTGGCACTG+CGG | - | chr4.4:73815214-73815233 | None:intergenic | 50.0% | |
| TCTTGCTAGGACTTGAACCC+TGG | + | chr4.4:73814943-73814962 | MS.gene48816:intron | 50.0% | |
| TCTTTGCAGACTCGCAAAGG+TGG | - | chr4.4:73814375-73814394 | None:intergenic | 50.0% | |
| TGGGCAGTAGCACAATGGTA+AGG | - | chr4.4:73812989-73813008 | None:intergenic | 50.0% | |
| TGTCGATGTCGGATGGCATA+AGG | - | chr4.4:73814163-73814182 | None:intergenic | 50.0% | |
| ! | GGGCTGAACCTTTTCAACCA+GGG | + | chr4.4:73815349-73815368 | MS.gene48816:intron | 50.0% |
| ! | TAAACCGGTTCAACCAACCC+TGG | - | chr4.4:73815369-73815388 | None:intergenic | 50.0% |
| !! | CGAAATGACGAGGTGGGTTT+TGG | + | chr4.4:73814051-73814070 | MS.gene48816:intron | 50.0% |
| !! | TCAACCAGGGTTGGTTGAAC+CGG | + | chr4.4:73815362-73815381 | MS.gene48816:intron | 50.0% |
| AACCTATGGCGCTGCCATTG+TGG | - | chr4.4:73814109-73814128 | None:intergenic | 55.0% | |
| AAGGGTGGGCAGTAGCACAA+TGG | - | chr4.4:73812994-73813013 | None:intergenic | 55.0% | |
| ACCTATGGCGCTGCCATTGT+GGG | - | chr4.4:73814108-73814127 | None:intergenic | 55.0% | |
| AGTAGCTCACTTGGCACTGC+GGG | - | chr4.4:73815213-73815232 | None:intergenic | 55.0% | |
| CACGAGAATTCCGCTAGGTG+AGG | + | chr4.4:73812614-73812633 | MS.gene48816:intron | 55.0% | |
| GAATTCCGCTAGGTGAGGTC+AGG | + | chr4.4:73812619-73812638 | MS.gene48816:intron | 55.0% | |
| GCTCCCCAACCTCACATGAA+GGG | - | chr4.4:73812907-73812926 | None:intergenic | 55.0% | |
| TCTTCCGTCTTTCAGCGAGC+AGG | + | chr4.4:73813824-73813843 | MS.gene48816:CDS | 55.0% | |
| ! | GGGGCTGAACCTTTTCAACC+AGG | + | chr4.4:73815348-73815367 | MS.gene48816:intron | 55.0% |
| ! | GTTTGTAACCTCGAGGTGCC+AGG | - | chr4.4:73812960-73812979 | None:intergenic | 55.0% |
| GGCTCCCCAACCTCACATGA+AGG | - | chr4.4:73812908-73812927 | None:intergenic | 60.0% | |
| GTAGCTCACTTGGCACTGCG+GGG | - | chr4.4:73815212-73815231 | None:intergenic | 60.0% | |
| GCCCACAATGGCAGCGCCAT+AGG | + | chr4.4:73814104-73814123 | MS.gene48816:intron | 65.0% | |
| ACCTGACCCACCCACCCACG+AGG | + | chr4.4:73815016-73815035 | MS.gene48816:intron | 70.0% | |
| GGCGCCCTGACCTCACCTAG+CGG | - | chr4.4:73812627-73812646 | None:intergenic | 70.0% | |
| TCCTCGTGGGTGGGTGGGTC+AGG | - | chr4.4:73815020-73815039 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 73812338 | 73815756 | 73812338 | ID=MS.gene48816 |
| chr4.4 | mRNA | 73812338 | 73815756 | 73812338 | ID=MS.gene48816.t1;Parent=MS.gene48816 |
| chr4.4 | exon | 73812338 | 73812419 | 73812338 | ID=MS.gene48816.t1.exon1;Parent=MS.gene48816.t1 |
| chr4.4 | CDS | 73812338 | 73812419 | 73812338 | ID=cds.MS.gene48816.t1;Parent=MS.gene48816.t1 |
| chr4.4 | exon | 73813700 | 73813845 | 73813700 | ID=MS.gene48816.t1.exon2;Parent=MS.gene48816.t1 |
| chr4.4 | CDS | 73813700 | 73813845 | 73813700 | ID=cds.MS.gene48816.t1;Parent=MS.gene48816.t1 |
| chr4.4 | exon | 73814289 | 73814483 | 73814289 | ID=MS.gene48816.t1.exon3;Parent=MS.gene48816.t1 |
| chr4.4 | CDS | 73814289 | 73814483 | 73814289 | ID=cds.MS.gene48816.t1;Parent=MS.gene48816.t1 |
| chr4.4 | exon | 73814637 | 73814696 | 73814637 | ID=MS.gene48816.t1.exon4;Parent=MS.gene48816.t1 |
| chr4.4 | CDS | 73814637 | 73814696 | 73814637 | ID=cds.MS.gene48816.t1;Parent=MS.gene48816.t1 |
| chr4.4 | exon | 73815592 | 73815756 | 73815592 | ID=MS.gene48816.t1.exon5;Parent=MS.gene48816.t1 |
| chr4.4 | CDS | 73815592 | 73815756 | 73815592 | ID=cds.MS.gene48816.t1;Parent=MS.gene48816.t1 |
| Gene Sequence |
| Protein sequence |
