Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49009.t1 | XP_013448645.1 | 80.3 | 340 | 65 | 2 | 1 | 339 | 1 | 339 | 8.00E-115 | 423.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49009.t1 | A0A072TZ05 | 80.3 | 340 | 65 | 2 | 1 | 339 | 1 | 339 | 5.8e-115 | 423.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49009 | MS.gene009653 | PPI |
| MS.gene98045 | MS.gene49009 | PPI |
| MS.gene49009 | MS.gene53889 | PPI |
| MS.gene49009 | MS.gene049594 | PPI |
| MS.gene49009 | MS.gene017247 | PPI |
| MS.gene49009 | MS.gene26246 | PPI |
| MS.gene49009 | MS.gene05127 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49009.t1 | MTR_7g056407 | 91.176 | 340 | 28 | 2 | 1 | 339 | 1 | 339 | 0.0 | 507 |
| MS.gene49009.t1 | MTR_3g065180 | 72.701 | 348 | 78 | 9 | 1 | 339 | 1 | 340 | 6.18e-152 | 431 |
| MS.gene49009.t1 | MTR_8g013650 | 71.698 | 53 | 15 | 0 | 287 | 339 | 182 | 234 | 3.03e-25 | 102 |
| MS.gene49009.t1 | MTR_4g132760 | 43.411 | 129 | 41 | 3 | 219 | 339 | 113 | 217 | 1.46e-23 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49009.t1 | AT3G07120 | 36.267 | 375 | 188 | 11 | 1 | 339 | 1 | 360 | 8.74e-56 | 186 |
| MS.gene49009.t1 | AT3G25030 | 46.512 | 129 | 45 | 3 | 211 | 339 | 146 | 250 | 1.12e-28 | 111 |
| MS.gene49009.t1 | AT3G25030 | 35.556 | 90 | 54 | 2 | 14 | 100 | 28 | 116 | 5.11e-11 | 62.8 |
| MS.gene49009.t1 | AT3G25030 | 46.512 | 129 | 45 | 3 | 211 | 339 | 146 | 250 | 1.12e-28 | 111 |
| MS.gene49009.t1 | AT3G25030 | 35.556 | 90 | 54 | 2 | 14 | 100 | 28 | 116 | 5.11e-11 | 62.8 |
| MS.gene49009.t1 | AT3G25030 | 46.512 | 129 | 45 | 3 | 211 | 339 | 146 | 250 | 1.12e-28 | 111 |
| MS.gene49009.t1 | AT3G25030 | 35.556 | 90 | 54 | 2 | 14 | 100 | 28 | 116 | 5.11e-11 | 62.8 |
| MS.gene49009.t1 | AT3G25030 | 46.512 | 129 | 45 | 3 | 211 | 339 | 106 | 210 | 1.27e-28 | 110 |
| MS.gene49009.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 158 | 256 | 5.57e-27 | 107 |
| MS.gene49009.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 158 | 256 | 5.57e-27 | 107 |
| MS.gene49009.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 158 | 256 | 5.74e-27 | 107 |
| MS.gene49009.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 161 | 259 | 6.38e-27 | 107 |
| MS.gene49009.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 161 | 259 | 6.38e-27 | 107 |
| MS.gene49009.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 161 | 259 | 6.38e-27 | 107 |
| MS.gene49009.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 161 | 259 | 6.38e-27 | 107 |
| MS.gene49009.t1 | AT4G13100 | 52.336 | 107 | 36 | 4 | 240 | 339 | 167 | 265 | 9.54e-27 | 107 |
| MS.gene49009.t1 | AT4G03965 | 43.119 | 109 | 53 | 3 | 232 | 339 | 109 | 209 | 1.33e-21 | 91.7 |
| MS.gene49009.t1 | AT4G22250 | 45.536 | 112 | 42 | 4 | 231 | 339 | 119 | 214 | 1.64e-20 | 89.0 |
| MS.gene49009.t1 | AT1G62370 | 55.102 | 49 | 22 | 0 | 291 | 339 | 156 | 204 | 6.61e-17 | 78.6 |
Find 97 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTCTACTGTTAGGATTT+TGG | 0.123677 | 7.3:-48515700 | None:intergenic |
| GTCTACAAGCGTTCGATTCT+TGG | 0.269402 | 7.3:-48514314 | None:intergenic |
| GTTGGTCTCGTCTTCTTTGA+TGG | 0.313588 | 7.3:-48514338 | None:intergenic |
| GCAGCAGAGGTGGATGCTTC+AGG | 0.335620 | 7.3:+48516124 | MS.gene49009:CDS |
| CTACGTCGTCGTGGTGAGTT+TGG | 0.336483 | 7.3:-48515757 | None:intergenic |
| ACTTGCTGGAGGAGACTGAT+AGG | 0.350211 | 7.3:+48516176 | MS.gene49009:CDS |
| AAGGGAGGCAGTGGCAGCGC+AGG | 0.359534 | 7.3:+48516081 | MS.gene49009:CDS |
| CCACTTGGTGAGTCCTGGAT+TGG | 0.368107 | 7.3:-48515790 | None:intergenic |
| GGCAGTGGCAGCGCAGGAGG+CGG | 0.372743 | 7.3:+48516087 | MS.gene49009:CDS |
| AGAGACAGGGAGGGCACTTT+CGG | 0.384237 | 7.3:+48516057 | MS.gene49009:CDS |
| GAGTCGAATCTTGTCCTTGA+AGG | 0.385931 | 7.3:-48515618 | None:intergenic |
| AGAAGCTGCTGCAGCAGCAG+AGG | 0.398231 | 7.3:+48516111 | MS.gene49009:CDS |
| TCTACAAGCGTTCGATTCTT+GGG | 0.400963 | 7.3:-48514313 | None:intergenic |
| GACTGATAGGGAGATGGGAT+TGG | 0.406569 | 7.3:+48516189 | MS.gene49009:CDS |
| GATGTCACTAATGGACTTGC+TGG | 0.407185 | 7.3:+48516162 | MS.gene49009:CDS |
| TCCAATGATGATGTCACTAA+TGG | 0.408666 | 7.3:+48516153 | MS.gene49009:CDS |
| TGGATAGGAATATCTGAAGT+TGG | 0.409983 | 7.3:-48515680 | None:intergenic |
| GGAGGCAGTGGCAGCGCAGG+AGG | 0.411392 | 7.3:+48516084 | MS.gene49009:CDS |
| AACCGTCGAGAGAAGTTTGC+TGG | 0.419697 | 7.3:+48514220 | MS.gene49009:CDS |
| AAGATCTTGGAAAGCCTTCA+AGG | 0.430697 | 7.3:+48515604 | MS.gene49009:intron |
| TTTCTTGTTGTCATCATCGT+CGG | 0.432780 | 7.3:-48516032 | None:intergenic |
| TGGTCTAGTGGCCGGAGCAC+TGG | 0.435106 | 7.3:-48515837 | None:intergenic |
| TCCATTAGTGACATCATCAT+TGG | 0.437375 | 7.3:-48516154 | None:intergenic |
| GTCGTCCACTTGGTGAGTCC+TGG | 0.439723 | 7.3:-48515795 | None:intergenic |
| CACTTGGTGAGTCCTGGATT+GGG | 0.439944 | 7.3:-48515789 | None:intergenic |
| AGCTGCTGCAGCAGCAGAGG+TGG | 0.440857 | 7.3:+48516114 | MS.gene49009:CDS |
| GAAAGTGCCCTCCCTGTCTC+TGG | 0.444680 | 7.3:-48516055 | None:intergenic |
| GATGTGTTCAAGGGAGCTTA+TGG | 0.447756 | 7.3:+48516372 | MS.gene49009:CDS |
| ATCGGAAGAGTCCAGTGCTC+CGG | 0.472996 | 7.3:+48515826 | MS.gene49009:CDS |
| GTTCGATTCTTGGGAGGTGA+TGG | 0.474072 | 7.3:-48514304 | None:intergenic |
| GTTTCTGTAGGATGTGTTCA+AGG | 0.475908 | 7.3:+48516362 | MS.gene49009:CDS |
| TTGGGAGGTGATGGTCGGTT+AGG | 0.476094 | 7.3:-48514295 | None:intergenic |
| TTCTTGTTGTCATCATCGTC+GGG | 0.477334 | 7.3:-48516031 | None:intergenic |
| TCAAACGCACTGGCTCTACT+TGG | 0.479715 | 7.3:+48515639 | MS.gene49009:CDS |
| ACTTTCGGCAAGGGAGGCAG+TGG | 0.480490 | 7.3:+48516072 | MS.gene49009:CDS |
| AGGGAGGGCACTTTCGGCAA+GGG | 0.484149 | 7.3:+48516063 | MS.gene49009:CDS |
| CGTCGTGGTGAGTTTGGATT+CGG | 0.488765 | 7.3:-48515751 | None:intergenic |
| AAGGGAGCTTATGGTGGCTA+AGG | 0.488894 | 7.3:+48516381 | MS.gene49009:CDS |
| GGAGCACTGGACTCTTCCGA+TGG | 0.488970 | 7.3:-48515824 | None:intergenic |
| GACAACAAGAAACCAGAGAC+AGG | 0.501669 | 7.3:+48516043 | MS.gene49009:CDS |
| CTTGTGGCCACAGTTTCTGT+AGG | 0.501731 | 7.3:+48516350 | MS.gene49009:CDS |
| TATTTGCATGGTGAAGCATA+AGG | 0.513921 | 7.3:+48516312 | MS.gene49009:CDS |
| GGAGGAGACTGATAGGGAGA+TGG | 0.517088 | 7.3:+48516183 | MS.gene49009:CDS |
| GTGAACTGTGGTCTAGTGGC+CGG | 0.520905 | 7.3:-48515845 | None:intergenic |
| AGATGGGATTGGAAGGATCA+AGG | 0.521559 | 7.3:+48516200 | MS.gene49009:CDS |
| CCAGAAAACTCCTCTGGCGG+AGG | 0.528261 | 7.3:+48515902 | MS.gene49009:CDS |
| GAATTTCTTCGTGAGAGTTG+CGG | 0.530210 | 7.3:-48515935 | None:intergenic |
| GAATCACCAGAAAACTCCTC+TGG | 0.532041 | 7.3:+48515896 | MS.gene49009:CDS |
| GAGGAGACTGATAGGGAGAT+GGG | 0.534352 | 7.3:+48516184 | MS.gene49009:CDS |
| CAGGGAGGGCACTTTCGGCA+AGG | 0.535913 | 7.3:+48516062 | MS.gene49009:CDS |
| TGGACTCTTCCGATGGGTCA+AGG | 0.547233 | 7.3:-48515817 | None:intergenic |
| GAATGTGAAGATGATGAGGA+TGG | 0.549427 | 7.3:+48516262 | MS.gene49009:CDS |
| CGGCTCTGATGACACATTGG+TGG | 0.553152 | 7.3:-48515957 | None:intergenic |
| TAGACATGTCAACCCAATCC+AGG | 0.554574 | 7.3:+48515777 | MS.gene49009:CDS |
| GAGGGCACTTTCGGCAAGGG+AGG | 0.557626 | 7.3:+48516066 | MS.gene49009:CDS |
| ATGGGTCAAGGTCGTCCACT+TGG | 0.562504 | 7.3:-48515805 | None:intergenic |
| GATTCTTGGGAGGTGATGGT+CGG | 0.565672 | 7.3:-48514300 | None:intergenic |
| ATTTGCATGGTGAAGCATAA+GGG | 0.569184 | 7.3:+48516313 | MS.gene49009:CDS |
| GATAGGGAGATGGGATTGGA+AGG | 0.574708 | 7.3:+48516193 | MS.gene49009:CDS |
| ACTACACGTCCTCGGTGAAA+CGG | 0.574720 | 7.3:-48515977 | None:intergenic |
| GCAGAGGTGGATGCTTCAGG+AGG | 0.578582 | 7.3:+48516127 | MS.gene49009:CDS |
| ATTAGTGACATCATCATTGG+AGG | 0.583297 | 7.3:-48516151 | None:intergenic |
| CTTGCTGGAGGAGACTGATA+GGG | 0.588347 | 7.3:+48516177 | MS.gene49009:CDS |
| TTTCTGTAGGATGTGTTCAA+GGG | 0.589932 | 7.3:+48516363 | MS.gene49009:CDS |
| AGTGGACGACCTTGACCCAT+CGG | 0.591294 | 7.3:+48515808 | MS.gene49009:CDS |
| TAAAAGTCACTACACGTCCT+CGG | 0.592014 | 7.3:-48515985 | None:intergenic |
| AATACAACAAGTCTCTTCCA+TGG | 0.592393 | 7.3:-48516293 | None:intergenic |
| CAGAGAGACGTGTGGACATG+CGG | 0.594260 | 7.3:-48515871 | None:intergenic |
| CTACAGAAACTGTGGCCACA+AGG | 0.594833 | 7.3:-48516349 | None:intergenic |
| AAGATTCGACTCAAACGCAC+TGG | 0.596635 | 7.3:+48515629 | MS.gene49009:CDS |
| AGGGAGCTTATGGTGGCTAA+GGG | 0.598389 | 7.3:+48516382 | MS.gene49009:CDS |
| AGAGACTTGTTGTATTTGCA+TGG | 0.599875 | 7.3:+48516300 | MS.gene49009:CDS |
| AGCCAGCAAACTTCTCTCGA+CGG | 0.607241 | 7.3:-48514222 | None:intergenic |
| GAGCACTGGACTCTTCCGAT+GGG | 0.611360 | 7.3:-48515823 | None:intergenic |
| TTCTTCGTGAGAGTTGCGGC+CGG | 0.611845 | 7.3:-48515931 | None:intergenic |
| CCGGAGATTTCCTCCGCCAG+AGG | 0.617384 | 7.3:-48515912 | None:intergenic |
| CAAGAAACCAGAGACAGGGA+GGG | 0.618736 | 7.3:+48516048 | MS.gene49009:CDS |
| GCGAGTGAACTGTGGTCTAG+TGG | 0.621980 | 7.3:-48515849 | None:intergenic |
| ACAAGAAACCAGAGACAGGG+AGG | 0.622066 | 7.3:+48516047 | MS.gene49009:CDS |
| TGAGGATGGAGAAGGTGCCA+TGG | 0.630424 | 7.3:+48516276 | MS.gene49009:CDS |
| GTCACTAATGGACTTGCTGG+AGG | 0.632385 | 7.3:+48516165 | MS.gene49009:CDS |
| CCTCTGGCGGAGGAAATCTC+CGG | 0.633622 | 7.3:+48515912 | MS.gene49009:CDS |
| CAGAGGTGGATGCTTCAGGA+GGG | 0.637047 | 7.3:+48516128 | MS.gene49009:CDS |
| TCACCAGAAAACTCCTCTGG+CGG | 0.638652 | 7.3:+48515899 | MS.gene49009:CDS |
| GTGTTCAAGGGAGCTTATGG+TGG | 0.648316 | 7.3:+48516375 | MS.gene49009:CDS |
| TGAAGAATGTGAAGATGATG+AGG | 0.655551 | 7.3:+48516258 | MS.gene49009:CDS |
| AACACATCCTACAGAAACTG+TGG | 0.657098 | 7.3:-48516357 | None:intergenic |
| ACAAGCGTTCGATTCTTGGG+AGG | 0.661109 | 7.3:-48514310 | None:intergenic |
| GACATGCGGCGAGTGAACTG+TGG | 0.665014 | 7.3:-48515857 | None:intergenic |
| AAACGGCTCTGATGACACAT+TGG | 0.665091 | 7.3:-48515960 | None:intergenic |
| CCAATCCAGGACTCACCAAG+TGG | 0.671649 | 7.3:+48515790 | MS.gene49009:CDS |
| ACAATGAAATTGTTGCAGAG+TGG | 0.671764 | 7.3:-48516412 | None:intergenic |
| ACAACAAGAAACCAGAGACA+GGG | 0.675922 | 7.3:+48516044 | MS.gene49009:CDS |
| GAAGATGATGAGGATGGAGA+AGG | 0.686833 | 7.3:+48516268 | MS.gene49009:CDS |
| TGATTCGACAGAGAGACGTG+TGG | 0.688510 | 7.3:-48515879 | None:intergenic |
| TTGACATGTCTACGTCGTCG+TGG | 0.716192 | 7.3:-48515766 | None:intergenic |
| TCATCAGAGCCGTTTCACCG+AGG | 0.765959 | 7.3:+48515968 | MS.gene49009:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAATCAATTATTT+AGG | + | chr7.3:48515385-48515404 | MS.gene49009:intron | 10.0% |
| !! | ATAAATTAACATATATGTAA+CGG | - | chr7.3:48515060-48515079 | None:intergenic | 10.0% |
| !! | AAACCTCAATAAAAAAAATA+GGG | + | chr7.3:48514532-48514551 | MS.gene49009:intron | 15.0% |
| !! | AATAAAAATTGATCATAACA+TGG | - | chr7.3:48514809-48514828 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAAATTTGACT+TGG | - | chr7.3:48514685-48514704 | None:intergenic | 15.0% |
| !!! | CATATATATTTTTACATTAG+TGG | - | chr7.3:48515028-48515047 | None:intergenic | 15.0% |
| !!! | GTCAAATTTTTTTTTTTTGA+AGG | + | chr7.3:48514686-48514705 | MS.gene49009:intron | 15.0% |
| !!! | TATGATCATACTTTTTTTTT+AGG | + | chr7.3:48514722-48514741 | MS.gene49009:intron | 15.0% |
| !!! | TTACATTGTTTTGTTTTTAA+TGG | + | chr7.3:48514409-48514428 | MS.gene49009:intron | 15.0% |
| !! | AAAATTATGTTAGTACAGAA+TGG | + | chr7.3:48514432-48514451 | MS.gene49009:intron | 20.0% |
| !! | ATTACATTATAAATTTGTCG+AGG | + | chr7.3:48515528-48515547 | MS.gene49009:intron | 20.0% |
| !! | CAAACCTCAATAAAAAAAAT+AGG | + | chr7.3:48514531-48514550 | MS.gene49009:intron | 20.0% |
| !!! | ATATGTAACTTTTGTATCTA+TGG | + | chr7.3:48515248-48515267 | MS.gene49009:intron | 20.0% |
| !!! | TAACCCTATTTTTTTTATTG+AGG | - | chr7.3:48514538-48514557 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATATTTCTTTC+TGG | + | chr7.3:48514924-48514943 | MS.gene49009:intron | 20.0% |
| ! | ACTAGCAAACAATATGTATT+GGG | - | chr7.3:48514592-48514611 | None:intergenic | 25.0% |
| ! | ATATTATGATCTATGAAGCA+CGG | - | chr7.3:48515485-48515504 | None:intergenic | 25.0% |
| ! | GATAGTAGATGAATAAATCA+AGG | - | chr7.3:48515159-48515178 | None:intergenic | 25.0% |
| ! | GTACAATAATATGTTACCTA+CGG | - | chr7.3:48514372-48514391 | None:intergenic | 25.0% |
| ! | TTGTTTGTTCTTACTTTCTT+TGG | + | chr7.3:48514827-48514846 | MS.gene49009:intron | 25.0% |
| !! | AAATCAATTATTTAGGACAC+CGG | + | chr7.3:48515392-48515411 | MS.gene49009:intron | 25.0% |
| !! | AGTAGAAGTTTTTCTCAATT+CGG | + | chr7.3:48515713-48515732 | MS.gene49009:CDS | 25.0% |
| !! | AGTTGAAAAGTTGATTTATG+TGG | - | chr7.3:48514897-48514916 | None:intergenic | 25.0% |
| AGGGTTAAAATTCTCAAAGA+GGG | + | chr7.3:48514551-48514570 | MS.gene49009:intron | 30.0% | |
| CTAATGACATAAATTGCTCA+AGG | - | chr7.3:48515102-48515121 | None:intergenic | 30.0% | |
| GACTAGCAAACAATATGTAT+TGG | - | chr7.3:48514593-48514612 | None:intergenic | 30.0% | |
| GAGAACTGTTGATCAATTAA+TGG | - | chr7.3:48515223-48515242 | None:intergenic | 30.0% | |
| TAACATATATGTAACGGTGT+TGG | - | chr7.3:48515054-48515073 | None:intergenic | 30.0% | |
| TAGGGTTAAAATTCTCAAAG+AGG | + | chr7.3:48514550-48514569 | MS.gene49009:intron | 30.0% | |
| TATGAGTGTTATATAGGTGT+CGG | + | chr7.3:48515337-48515356 | MS.gene49009:intron | 30.0% | |
| TATGTATTGGGACATAAACA+AGG | - | chr7.3:48514580-48514599 | None:intergenic | 30.0% | |
| TGAGAAAAACTTCTACTGTT+AGG | - | chr7.3:48515710-48515729 | None:intergenic | 30.0% | |
| TGATCATAATCTATGAAGCA+TGG | + | chr7.3:48514961-48514980 | MS.gene49009:intron | 30.0% | |
| ! | AACTTCTACTGTTAGGATTT+TGG | - | chr7.3:48515703-48515722 | None:intergenic | 30.0% |
| ! | AGCTAAAATGCTAGTTGATA+AGG | + | chr7.3:48514860-48514879 | MS.gene49009:intron | 30.0% |
| ! | AGTTGCTAATCTCTTTTGAT+TGG | - | chr7.3:48514269-48514288 | None:intergenic | 30.0% |
| !! | CTTATATTTCTTTCTGGAGT+AGG | + | chr7.3:48514930-48514949 | MS.gene49009:intron | 30.0% |
| !! | TTCACTGATTTGAAAGATCT+TGG | + | chr7.3:48515591-48515610 | MS.gene49009:intron | 30.0% |
| AATACAACAAGTCTCTTCCA+TGG | - | chr7.3:48516296-48516315 | None:intergenic | 35.0% | |
| ACAATGAAATTGTTGCAGAG+TGG | - | chr7.3:48516415-48516434 | None:intergenic | 35.0% | |
| AGCTAACTATTTGAGAACCA+TGG | - | chr7.3:48515559-48515578 | None:intergenic | 35.0% | |
| ATTAGTGACATCATCATTGG+AGG | - | chr7.3:48516154-48516173 | None:intergenic | 35.0% | |
| ATTTGCATGGTGAAGCATAA+GGG | + | chr7.3:48516313-48516332 | MS.gene49009:CDS | 35.0% | |
| GGGTTAAAATTCTCAAAGAG+GGG | + | chr7.3:48514552-48514571 | MS.gene49009:intron | 35.0% | |
| TATTTGCATGGTGAAGCATA+AGG | + | chr7.3:48516312-48516331 | MS.gene49009:CDS | 35.0% | |
| TCCATTAGTGACATCATCAT+TGG | - | chr7.3:48516157-48516176 | None:intergenic | 35.0% | |
| TGAAGAATGTGAAGATGATG+AGG | + | chr7.3:48516258-48516277 | MS.gene49009:CDS | 35.0% | |
| TTTCTGTAGGATGTGTTCAA+GGG | + | chr7.3:48516363-48516382 | MS.gene49009:CDS | 35.0% | |
| ! | ACTTTTGTATCTATGGTGTG+CGG | + | chr7.3:48515255-48515274 | MS.gene49009:intron | 35.0% |
| ! | CTACTGTTAGGATTTTGGAT+AGG | - | chr7.3:48515698-48515717 | None:intergenic | 35.0% |
| ! | TCCAATGATGATGTCACTAA+TGG | + | chr7.3:48516153-48516172 | MS.gene49009:CDS | 35.0% |
| ! | TGGATAGGAATATCTGAAGT+TGG | - | chr7.3:48515683-48515702 | None:intergenic | 35.0% |
| ! | TTTCTTGTTGTCATCATCGT+CGG | - | chr7.3:48516035-48516054 | None:intergenic | 35.0% |
| !! | AGAGACTTGTTGTATTTGCA+TGG | + | chr7.3:48516300-48516319 | MS.gene49009:CDS | 35.0% |
| !!! | TTACCTACGGTCTTTTTTGT+TGG | - | chr7.3:48514359-48514378 | None:intergenic | 35.0% |
| AACACATCCTACAGAAACTG+TGG | - | chr7.3:48516360-48516379 | None:intergenic | 40.0% | |
| AAGATCTTGGAAAGCCTTCA+AGG | + | chr7.3:48515604-48515623 | MS.gene49009:intron | 40.0% | |
| AATTTGTCGAGGAAAGACCA+TGG | + | chr7.3:48515539-48515558 | MS.gene49009:intron | 40.0% | |
| ACAACAAGAAACCAGAGACA+GGG | + | chr7.3:48516044-48516063 | MS.gene49009:CDS | 40.0% | |
| ACTTGAGATCACGATGTAAG+AGG | - | chr7.3:48514510-48514529 | None:intergenic | 40.0% | |
| AGACCAACAAAAAAGACCGT+AGG | + | chr7.3:48514353-48514372 | MS.gene49009:CDS | 40.0% | |
| GAATGTGAAGATGATGAGGA+TGG | + | chr7.3:48516262-48516281 | MS.gene49009:CDS | 40.0% | |
| GAATTTCTTCGTGAGAGTTG+CGG | - | chr7.3:48515938-48515957 | None:intergenic | 40.0% | |
| GGCTCGTATGAGTGTTATAT+AGG | + | chr7.3:48515331-48515350 | MS.gene49009:intron | 40.0% | |
| GTTTCTGTAGGATGTGTTCA+AGG | + | chr7.3:48516362-48516381 | MS.gene49009:CDS | 40.0% | |
| TAAAAGTCACTACACGTCCT+CGG | - | chr7.3:48515988-48516007 | None:intergenic | 40.0% | |
| TCTACAAGCGTTCGATTCTT+GGG | - | chr7.3:48514316-48514335 | None:intergenic | 40.0% | |
| ! | TACGGGTGTCATATGAGTAT+CGG | + | chr7.3:48515429-48515448 | MS.gene49009:intron | 40.0% |
| ! | TTCTTGTTGTCATCATCGTC+GGG | - | chr7.3:48516034-48516053 | None:intergenic | 40.0% |
| !! | TTTTAGAGACAGCTTCGATG+AGG | + | chr7.3:48516003-48516022 | MS.gene49009:CDS | 40.0% |
| AAGATTCGACTCAAACGCAC+TGG | + | chr7.3:48515629-48515648 | MS.gene49009:CDS | 45.0% | |
| AGATGGGATTGGAAGGATCA+AGG | + | chr7.3:48516200-48516219 | MS.gene49009:CDS | 45.0% | |
| GAAGATGATGAGGATGGAGA+AGG | + | chr7.3:48516268-48516287 | MS.gene49009:CDS | 45.0% | |
| GAATCACCAGAAAACTCCTC+TGG | + | chr7.3:48515896-48515915 | MS.gene49009:CDS | 45.0% | |
| GACAACAAGAAACCAGAGAC+AGG | + | chr7.3:48516043-48516062 | MS.gene49009:CDS | 45.0% | |
| GAGTCGAATCTTGTCCTTGA+AGG | - | chr7.3:48515621-48515640 | None:intergenic | 45.0% | |
| GATGTGTTCAAGGGAGCTTA+TGG | + | chr7.3:48516372-48516391 | MS.gene49009:CDS | 45.0% | |
| GTCTACAAGCGTTCGATTCT+TGG | - | chr7.3:48514317-48514336 | None:intergenic | 45.0% | |
| TAGACATGTCAACCCAATCC+AGG | + | chr7.3:48515777-48515796 | MS.gene49009:CDS | 45.0% | |
| TTTGTCTGAGTTGTCCGACA+CGG | + | chr7.3:48515310-48515329 | MS.gene49009:intron | 45.0% | |
| ! | AAACGGCTCTGATGACACAT+TGG | - | chr7.3:48515963-48515982 | None:intergenic | 45.0% |
| ! | GTTGGTCTCGTCTTCTTTGA+TGG | - | chr7.3:48514341-48514360 | None:intergenic | 45.0% |
| !! | GATGTCACTAATGGACTTGC+TGG | + | chr7.3:48516162-48516181 | MS.gene49009:CDS | 45.0% |
| AACACTCATACGAGCCGTGT+CGG | - | chr7.3:48515327-48515346 | None:intergenic | 50.0% | |
| AACCGTCGAGAGAAGTTTGC+TGG | + | chr7.3:48514220-48514239 | MS.gene49009:CDS | 50.0% | |
| AAGGGAGCTTATGGTGGCTA+AGG | + | chr7.3:48516381-48516400 | MS.gene49009:CDS | 50.0% | |
| ACAAGAAACCAGAGACAGGG+AGG | + | chr7.3:48516047-48516066 | MS.gene49009:CDS | 50.0% | |
| ACAAGCGTTCGATTCTTGGG+AGG | - | chr7.3:48514313-48514332 | None:intergenic | 50.0% | |
| ACTACACGTCCTCGGTGAAA+CGG | - | chr7.3:48515980-48515999 | None:intergenic | 50.0% | |
| AGCCAGCAAACTTCTCTCGA+CGG | - | chr7.3:48514225-48514244 | None:intergenic | 50.0% | |
| AGGGAGCTTATGGTGGCTAA+GGG | + | chr7.3:48516382-48516401 | MS.gene49009:CDS | 50.0% | |
| ATGAAGCATGGAGTCCGACA+CGG | + | chr7.3:48514973-48514992 | MS.gene49009:intron | 50.0% | |
| CAAGAAACCAGAGACAGGGA+GGG | + | chr7.3:48516048-48516067 | MS.gene49009:CDS | 50.0% | |
| CGATGTGTCAGTGTCGTATC+AGG | - | chr7.3:48515002-48515021 | None:intergenic | 50.0% | |
| CGTCGTGGTGAGTTTGGATT+CGG | - | chr7.3:48515754-48515773 | None:intergenic | 50.0% | |
| CTACAGAAACTGTGGCCACA+AGG | - | chr7.3:48516352-48516371 | None:intergenic | 50.0% | |
| CTTGCTGGAGGAGACTGATA+GGG | + | chr7.3:48516177-48516196 | MS.gene49009:CDS | 50.0% | |
| CTTGTGGCCACAGTTTCTGT+AGG | + | chr7.3:48516350-48516369 | MS.gene49009:CDS | 50.0% | |
| GACTGATAGGGAGATGGGAT+TGG | + | chr7.3:48516189-48516208 | MS.gene49009:CDS | 50.0% | |
| GAGGAGACTGATAGGGAGAT+GGG | + | chr7.3:48516184-48516203 | MS.gene49009:CDS | 50.0% | |
| GATAGGGAGATGGGATTGGA+AGG | + | chr7.3:48516193-48516212 | MS.gene49009:CDS | 50.0% | |
| GTGTTCAAGGGAGCTTATGG+TGG | + | chr7.3:48516375-48516394 | MS.gene49009:CDS | 50.0% | |
| GTTCGATTCTTGGGAGGTGA+TGG | - | chr7.3:48514307-48514326 | None:intergenic | 50.0% | |
| TACTTCGACACTCCTGCGAT+CGG | - | chr7.3:48515366-48515385 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACCTCT+AGG | - | chr7.3:48515474-48515493 | None:intergenic | 50.0% | |
| TCACCAGAAAACTCCTCTGG+CGG | + | chr7.3:48515899-48515918 | MS.gene49009:CDS | 50.0% | |
| TGATTCGACAGAGAGACGTG+TGG | - | chr7.3:48515882-48515901 | None:intergenic | 50.0% | |
| TTGACATGTCTACGTCGTCG+TGG | - | chr7.3:48515769-48515788 | None:intergenic | 50.0% | |
| ! | ACTTGCTGGAGGAGACTGAT+AGG | + | chr7.3:48516176-48516195 | MS.gene49009:CDS | 50.0% |
| ! | CACTTGGTGAGTCCTGGATT+GGG | - | chr7.3:48515792-48515811 | None:intergenic | 50.0% |
| ! | GATTCTTGGGAGGTGATGGT+CGG | - | chr7.3:48514303-48514322 | None:intergenic | 50.0% |
| !! | GTCACTAATGGACTTGCTGG+AGG | + | chr7.3:48516165-48516184 | MS.gene49009:CDS | 50.0% |
| !! | TCAAACGCACTGGCTCTACT+TGG | + | chr7.3:48515639-48515658 | MS.gene49009:CDS | 50.0% |
| AGTGGACGACCTTGACCCAT+CGG | + | chr7.3:48515808-48515827 | MS.gene49009:CDS | 55.0% | |
| ATCGGAAGAGTCCAGTGCTC+CGG | + | chr7.3:48515826-48515845 | MS.gene49009:CDS | 55.0% | |
| ATGGGTCAAGGTCGTCCACT+TGG | - | chr7.3:48515808-48515827 | None:intergenic | 55.0% | |
| CAGAGAGACGTGTGGACATG+CGG | - | chr7.3:48515874-48515893 | None:intergenic | 55.0% | |
| CAGAGGTGGATGCTTCAGGA+GGG | + | chr7.3:48516128-48516147 | MS.gene49009:CDS | 55.0% | |
| CCAATCCAGGACTCACCAAG+TGG | + | chr7.3:48515790-48515809 | MS.gene49009:CDS | 55.0% | |
| CCGTACGACACGTGTCAAAC+CGG | - | chr7.3:48515414-48515433 | None:intergenic | 55.0% | |
| CGGTTTGACACGTGTCGTAC+GGG | + | chr7.3:48515412-48515431 | MS.gene49009:intron | 55.0% | |
| CTACGTCGTCGTGGTGAGTT+TGG | - | chr7.3:48515760-48515779 | None:intergenic | 55.0% | |
| GCGAGTGAACTGTGGTCTAG+TGG | - | chr7.3:48515852-48515871 | None:intergenic | 55.0% | |
| GGAGGAGACTGATAGGGAGA+TGG | + | chr7.3:48516183-48516202 | MS.gene49009:CDS | 55.0% | |
| GTCGTATCAGGTGTCCGTGT+CGG | - | chr7.3:48514990-48515009 | None:intergenic | 55.0% | |
| GTGAACTGTGGTCTAGTGGC+CGG | - | chr7.3:48515848-48515867 | None:intergenic | 55.0% | |
| TCATCAGAGCCGTTTCACCG+AGG | + | chr7.3:48515968-48515987 | MS.gene49009:CDS | 55.0% | |
| TGGACTCTTCCGATGGGTCA+AGG | - | chr7.3:48515820-48515839 | None:intergenic | 55.0% | |
| TTCTTCGTGAGAGTTGCGGC+CGG | - | chr7.3:48515934-48515953 | None:intergenic | 55.0% | |
| ! | CCACTTGGTGAGTCCTGGAT+TGG | - | chr7.3:48515793-48515812 | None:intergenic | 55.0% |
| ! | CCGGTTTGACACGTGTCGTA+CGG | + | chr7.3:48515411-48515430 | MS.gene49009:intron | 55.0% |
| ! | CGGCTCTGATGACACATTGG+TGG | - | chr7.3:48515960-48515979 | None:intergenic | 55.0% |
| ! | TTGGGAGGTGATGGTCGGTT+AGG | - | chr7.3:48514298-48514317 | None:intergenic | 55.0% |
| !! | AGAGACAGGGAGGGCACTTT+CGG | + | chr7.3:48516057-48516076 | MS.gene49009:CDS | 55.0% |
| !! | GAGCACTGGACTCTTCCGAT+GGG | - | chr7.3:48515826-48515845 | None:intergenic | 55.0% |
| !! | TGAGGATGGAGAAGGTGCCA+TGG | + | chr7.3:48516276-48516295 | MS.gene49009:CDS | 55.0% |
| !!! | GGTGCTGCTTTTGCTCCTTG+TGG | + | chr7.3:48516334-48516353 | MS.gene49009:CDS | 55.0% |
| ACTTTCGGCAAGGGAGGCAG+TGG | + | chr7.3:48516072-48516091 | MS.gene49009:CDS | 60.0% | |
| AGAAGCTGCTGCAGCAGCAG+AGG | + | chr7.3:48516111-48516130 | MS.gene49009:CDS | 60.0% | |
| CCAGAAAACTCCTCTGGCGG+AGG | + | chr7.3:48515902-48515921 | MS.gene49009:CDS | 60.0% | |
| CCTCTGGCGGAGGAAATCTC+CGG | + | chr7.3:48515912-48515931 | MS.gene49009:CDS | 60.0% | |
| GACATGCGGCGAGTGAACTG+TGG | - | chr7.3:48515860-48515879 | None:intergenic | 60.0% | |
| GCAGAGGTGGATGCTTCAGG+AGG | + | chr7.3:48516127-48516146 | MS.gene49009:CDS | 60.0% | |
| GCAGCAGAGGTGGATGCTTC+AGG | + | chr7.3:48516124-48516143 | MS.gene49009:CDS | 60.0% | |
| ! | CCTCCGCCAGAGGAGTTTTC+TGG | - | chr7.3:48515905-48515924 | None:intergenic | 60.0% |
| ! | GTCGTCCACTTGGTGAGTCC+TGG | - | chr7.3:48515798-48515817 | None:intergenic | 60.0% |
| !! | AGGGAGGGCACTTTCGGCAA+GGG | + | chr7.3:48516063-48516082 | MS.gene49009:CDS | 60.0% |
| !! | CTCTAGGACTAGGCGTGTCG+CGG | - | chr7.3:48515458-48515477 | None:intergenic | 60.0% |
| !! | GAAAGTGCCCTCCCTGTCTC+TGG | - | chr7.3:48516058-48516077 | None:intergenic | 60.0% |
| !! | GCACGGACACCTCTAGGACT+AGG | - | chr7.3:48515468-48515487 | None:intergenic | 60.0% |
| !! | GGAGCACTGGACTCTTCCGA+TGG | - | chr7.3:48515827-48515846 | None:intergenic | 60.0% |
| AGCTGCTGCAGCAGCAGAGG+TGG | + | chr7.3:48516114-48516133 | MS.gene49009:CDS | 65.0% | |
| CCGGAGATTTCCTCCGCCAG+AGG | - | chr7.3:48515915-48515934 | None:intergenic | 65.0% | |
| CGCGACACGCCTAGTCCTAG+AGG | + | chr7.3:48515456-48515475 | MS.gene49009:intron | 65.0% | |
| TGGTCTAGTGGCCGGAGCAC+TGG | - | chr7.3:48515840-48515859 | None:intergenic | 65.0% | |
| !! | AGGTGTCGGACACCGATCGC+AGG | + | chr7.3:48515351-48515370 | MS.gene49009:intron | 65.0% |
| !! | CAGGGAGGGCACTTTCGGCA+AGG | + | chr7.3:48516062-48516081 | MS.gene49009:CDS | 65.0% |
| !! | GAGGGCACTTTCGGCAAGGG+AGG | + | chr7.3:48516066-48516085 | MS.gene49009:CDS | 65.0% |
| AAGGGAGGCAGTGGCAGCGC+AGG | + | chr7.3:48516081-48516100 | MS.gene49009:CDS | 70.0% | |
| GGAGGCAGTGGCAGCGCAGG+AGG | + | chr7.3:48516084-48516103 | MS.gene49009:CDS | 75.0% | |
| GGCAGTGGCAGCGCAGGAGG+CGG | + | chr7.3:48516087-48516106 | MS.gene49009:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 48514205 | 48516456 | 48514205 | ID=MS.gene49009 |
| chr7.3 | mRNA | 48514205 | 48516456 | 48514205 | ID=MS.gene49009.t1;Parent=MS.gene49009 |
| chr7.3 | exon | 48514205 | 48514374 | 48514205 | ID=MS.gene49009.t1.exon1;Parent=MS.gene49009.t1 |
| chr7.3 | CDS | 48514205 | 48514374 | 48514205 | ID=cds.MS.gene49009.t1;Parent=MS.gene49009.t1 |
| chr7.3 | exon | 48515607 | 48516456 | 48515607 | ID=MS.gene49009.t1.exon2;Parent=MS.gene49009.t1 |
| chr7.3 | CDS | 48515607 | 48516456 | 48515607 | ID=cds.MS.gene49009.t1;Parent=MS.gene49009.t1 |
| Gene Sequence |
| Protein sequence |
