Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49110.t1 | XP_013469655.1 | 95.7 | 446 | 6 | 1 | 1 | 433 | 1 | 446 | 4.70E-245 | 856.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49110.t1 | A0A072VQH8 | 95.7 | 446 | 6 | 1 | 1 | 433 | 1 | 446 | 3.4e-245 | 856.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49110 | MS.gene066422 | PPI |
| MS.gene066419 | MS.gene49110 | PPI |
| MS.gene49110 | MS.gene019628 | PPI |
| MS.gene066420 | MS.gene49110 | PPI |
| MS.gene49110 | MS.gene019630 | PPI |
| MS.gene056779 | MS.gene49110 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49110.t1 | MTR_1g100950 | 95.740 | 446 | 6 | 1 | 1 | 433 | 41 | 486 | 0.0 | 885 |
| MS.gene49110.t1 | MTR_1g100950 | 95.740 | 446 | 6 | 1 | 1 | 433 | 1 | 446 | 0.0 | 884 |
| MS.gene49110.t1 | MTR_1g100950 | 93.660 | 347 | 9 | 1 | 1 | 334 | 1 | 347 | 0.0 | 673 |
| MS.gene49110.t1 | MTR_8g030890 | 66.147 | 449 | 132 | 6 | 1 | 433 | 1 | 445 | 0.0 | 596 |
| MS.gene49110.t1 | MTR_3g065480 | 55.982 | 443 | 174 | 5 | 1 | 425 | 1 | 440 | 5.30e-180 | 510 |
| MS.gene49110.t1 | MTR_1g100950 | 91.393 | 244 | 20 | 1 | 1 | 243 | 1 | 244 | 1.68e-165 | 465 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49110.t1 | AT3G49050 | 69.492 | 472 | 105 | 5 | 1 | 433 | 1 | 472 | 0.0 | 665 |
| MS.gene49110.t1 | AT4G00500 | 61.247 | 449 | 155 | 5 | 1 | 432 | 1 | 447 | 0.0 | 548 |
| MS.gene49110.t1 | AT4G00500 | 61.247 | 449 | 155 | 5 | 1 | 432 | 1 | 447 | 0.0 | 548 |
| MS.gene49110.t1 | AT5G37710 | 55.257 | 447 | 170 | 6 | 1 | 432 | 1 | 432 | 1.26e-171 | 488 |
| MS.gene49110.t1 | AT5G37710 | 62.751 | 349 | 112 | 4 | 1 | 334 | 1 | 346 | 8.22e-157 | 447 |
Find 116 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTGTTGGATAATAAATT+AGG | 0.146068 | 1.3:-69102788 | MS.gene49110:CDS |
| CGTCAGATCATGCCATTATT+TGG | 0.173210 | 1.3:-69101400 | MS.gene49110:CDS |
| GTAATGCAGCTTTGTATTCT+TGG | 0.174372 | 1.3:+69100593 | None:intergenic |
| TTGTTGAGAGAAAGCCTTTC+AGG | 0.219282 | 1.3:-69101700 | MS.gene49110:intron |
| TAGATGTATGTCGCTTAATT+TGG | 0.232792 | 1.3:-69102519 | MS.gene49110:CDS |
| AATTATACTCTTACATTTGC+TGG | 0.240349 | 1.3:-69102656 | MS.gene49110:CDS |
| CGCTGCATGATTTGCTTTGC+AGG | 0.240470 | 1.3:+69100640 | None:intergenic |
| CTGATATAGTTCTTGCTATA+AGG | 0.241938 | 1.3:-69102844 | MS.gene49110:CDS |
| ACGATCTTCGGAACCCTCTT+TGG | 0.259036 | 1.3:-69102979 | MS.gene49110:CDS |
| GCAAATGTAAGAGTATAATT+TGG | 0.291177 | 1.3:+69102659 | None:intergenic |
| TGTTCACAATGGGCTGTTAA+AGG | 0.304854 | 1.3:-69102741 | MS.gene49110:CDS |
| CTTCTGTTAGTTCAACTAAT+AGG | 0.307521 | 1.3:-69100468 | MS.gene49110:CDS |
| TTTACGCCACCATCAGAATA+TGG | 0.317987 | 1.3:-69100538 | MS.gene49110:CDS |
| TGCTATAAGGGGACTAAATC+TGG | 0.319987 | 1.3:-69102831 | MS.gene49110:CDS |
| TTTCTAAGTAATAACCAATC+AGG | 0.324026 | 1.3:+69102929 | None:intergenic |
| ATTGTTTAGCTTGCGCTCGT+TGG | 0.340664 | 1.3:-69103120 | MS.gene49110:CDS |
| CTCTTTCTCTATCCAAATAA+TGG | 0.346939 | 1.3:+69101388 | None:intergenic |
| AACCCTCTTTGGGCGCCTCC+TGG | 0.352249 | 1.3:-69102968 | MS.gene49110:CDS |
| TGATCAAGATACAATATATA+TGG | 0.354509 | 1.3:+69102875 | None:intergenic |
| TGCCATGCTTATTGTGCTTA+AGG | 0.358859 | 1.3:-69101805 | MS.gene49110:CDS |
| CGATCTTCGGAACCCTCTTT+GGG | 0.364296 | 1.3:-69102978 | MS.gene49110:CDS |
| TTCTGTTGGATAATAAATTA+GGG | 0.368729 | 1.3:-69102787 | MS.gene49110:CDS |
| ATATTGAGAGGAAGAGAGTT+AGG | 0.369624 | 1.3:-69102562 | MS.gene49110:CDS |
| GGCACTGCTGTTCTCACAAC+TGG | 0.373000 | 1.3:+69101467 | None:intergenic |
| ACTTACATCCAAAGCCCTTT+GGG | 0.382582 | 1.3:+69101364 | None:intergenic |
| GACTTACATCCAAAGCCCTT+TGG | 0.385089 | 1.3:+69101363 | None:intergenic |
| TGATATAGTTCTTGCTATAA+GGG | 0.394351 | 1.3:-69102843 | MS.gene49110:CDS |
| TTGTTTAGCTTGCGCTCGTT+GGG | 0.398289 | 1.3:-69103119 | MS.gene49110:CDS |
| GAAAGAGGCCCAAAGGGCTT+TGG | 0.400956 | 1.3:-69101372 | MS.gene49110:CDS |
| ACATTTGCTGGACATTCCCT+TGG | 0.407940 | 1.3:-69102644 | MS.gene49110:CDS |
| AGAACAGCAGTGCCAGTAGA+TGG | 0.408642 | 1.3:-69101458 | MS.gene49110:CDS |
| CAGGGCATGACAGTGAAACT+TGG | 0.415218 | 1.3:-69103072 | MS.gene49110:CDS |
| GCTGGACATTCCCTTGGATC+AGG | 0.417188 | 1.3:-69102638 | MS.gene49110:CDS |
| AGGAGGGAGAGGAGAGTTCA+AGG | 0.427280 | 1.3:-69100504 | MS.gene49110:CDS |
| AAAGGCTGCTGGATGGGTTA+TGG | 0.430445 | 1.3:-69102723 | MS.gene49110:CDS |
| CTGTGTATGAAGACGATCTT+CGG | 0.437451 | 1.3:-69102991 | MS.gene49110:CDS |
| ACTTGAATATATCTTCCAAC+GGG | 0.444494 | 1.3:+69102006 | None:intergenic |
| CTGACGTAGCATTGCAAGAA+AGG | 0.454918 | 1.3:+69101417 | None:intergenic |
| TCCAACGGGGTGGCTGTCCT+TGG | 0.464056 | 1.3:+69102020 | None:intergenic |
| TAGCTTGCGCTCGTTGGGCG+TGG | 0.470914 | 1.3:-69103114 | MS.gene49110:CDS |
| TGGGCGCCTCCTGGTGGCTA+TGG | 0.472533 | 1.3:-69102959 | MS.gene49110:CDS |
| AAAGCAAATCATGCAGCGTC+AGG | 0.475395 | 1.3:-69100635 | MS.gene49110:CDS |
| GGAGTACGGTTAACGAAAGC+TGG | 0.481519 | 1.3:-69100447 | MS.gene49110:CDS |
| AATGGGCTGTTAAAGGCTGC+TGG | 0.482503 | 1.3:-69102734 | MS.gene49110:CDS |
| TGCTCAAACCTTCCATCTAC+TGG | 0.484062 | 1.3:+69101446 | None:intergenic |
| CCAGGTGCATAGAGTCTCCT+TGG | 0.485341 | 1.3:+69101737 | None:intergenic |
| TTGCTTTGCAGGTACTTCCA+TGG | 0.495743 | 1.3:+69100651 | None:intergenic |
| CACCAGGAGGCGCCCAAAGA+GGG | 0.495968 | 1.3:+69102966 | None:intergenic |
| CAATATTTCCAAGTCTATCT+CGG | 0.496694 | 1.3:+69102579 | None:intergenic |
| GCTATGGAATCAACCCTGAT+TGG | 0.521714 | 1.3:-69102943 | MS.gene49110:CDS |
| AAAAGATGTCTCCACACTGC+AGG | 0.522926 | 1.3:-69103091 | MS.gene49110:CDS |
| CATTATTTGGATAGAGAAAG+AGG | 0.525363 | 1.3:-69101387 | MS.gene49110:CDS |
| GCTGTTAAAGGCTGCTGGAT+GGG | 0.527172 | 1.3:-69102729 | MS.gene49110:CDS |
| GATAGAGAAAGAGGCCCAAA+GGG | 0.528361 | 1.3:-69101378 | MS.gene49110:CDS |
| TTAGGGAAGAGAAAGTTTGA+TGG | 0.529142 | 1.3:-69102770 | MS.gene49110:CDS |
| CTGCCAATTACAGTTGATGA+TGG | 0.534931 | 1.3:-69100686 | MS.gene49110:intron |
| AGGGCATGACAGTGAAACTT+GGG | 0.536314 | 1.3:-69103071 | MS.gene49110:CDS |
| AGGCTCAAATTCTTCTGTTG+CGG | 0.536990 | 1.3:+69103042 | None:intergenic |
| GGCTGTTAAAGGCTGCTGGA+TGG | 0.539589 | 1.3:-69102730 | MS.gene49110:CDS |
| CCACCAGGAGGCGCCCAAAG+AGG | 0.544467 | 1.3:+69102965 | None:intergenic |
| CATTTCTTTGCAGATTGGGA+AGG | 0.547393 | 1.3:-69101496 | MS.gene49110:intron |
| TAGCGACAAAGACGTGGGAC+AGG | 0.547885 | 1.3:+69103022 | None:intergenic |
| TAGGTGTTATGCTATTGCTC+CGG | 0.555326 | 1.3:-69102543 | MS.gene49110:CDS |
| CCTCTTTGGGCGCCTCCTGG+TGG | 0.558537 | 1.3:-69102965 | MS.gene49110:CDS |
| TAGGGAAGAGAAAGTTTGAT+GGG | 0.559444 | 1.3:-69102769 | MS.gene49110:CDS |
| CCAAGGAGACTCTATGCACC+TGG | 0.561142 | 1.3:-69101737 | MS.gene49110:CDS |
| GAGTGATTATGCTGTTCTGT+TGG | 0.561183 | 1.3:-69102801 | MS.gene49110:CDS |
| TTCTAAGTAATAACCAATCA+GGG | 0.562621 | 1.3:+69102930 | None:intergenic |
| CTGCAGCTACTCCTGATCCA+AGG | 0.564734 | 1.3:+69102627 | None:intergenic |
| ATTGTGCTTAAGGTGCATGA+AGG | 0.566191 | 1.3:-69101795 | MS.gene49110:CDS |
| TCAAAAGTTCCATATTCTGA+TGG | 0.568938 | 1.3:+69100529 | None:intergenic |
| GGGAAGAGAAAGTTTGATGG+GGG | 0.571897 | 1.3:-69102767 | MS.gene49110:CDS |
| TAGTTCAACTAATAGGAGTA+CGG | 0.579759 | 1.3:-69100461 | MS.gene49110:CDS |
| AGAGGAGAGTTCAAGGTCAG+AGG | 0.582485 | 1.3:-69100497 | MS.gene49110:CDS |
| GACTTGAATATATCTTCCAA+CGG | 0.583155 | 1.3:+69102005 | None:intergenic |
| TGCAGCTACTCCTGATCCAA+GGG | 0.585146 | 1.3:+69102628 | None:intergenic |
| AGTAGCTGCAGCGTTGAGCA+TGG | 0.585878 | 1.3:-69102615 | MS.gene49110:CDS |
| GTGCAGAACCGAGATAGACT+TGG | 0.587785 | 1.3:-69102587 | MS.gene49110:CDS |
| AGAAGATGCTAAAAGATCCA+AGG | 0.590230 | 1.3:-69101754 | MS.gene49110:CDS |
| CAATATACACACTCAACAAG+AGG | 0.590440 | 1.3:+69103139 | None:intergenic |
| CACCTTAAGCACAATAAGCA+TGG | 0.593008 | 1.3:+69101803 | None:intergenic |
| GGATAGAGAAAGAGGCCCAA+AGG | 0.594158 | 1.3:-69101379 | MS.gene49110:CDS |
| AAAGATGTCTCCACACTGCA+GGG | 0.595097 | 1.3:-69103090 | MS.gene49110:CDS |
| CAGCAGTGCCAGTAGATGGA+AGG | 0.597618 | 1.3:-69101454 | MS.gene49110:CDS |
| AGTTGAACTAACAGAAGACT+CGG | 0.602432 | 1.3:+69100474 | None:intergenic |
| CAGGAAACAATGACAAGACA+CGG | 0.602595 | 1.3:-69100616 | MS.gene49110:CDS |
| TCAAGATACAATATATATGG+TGG | 0.604903 | 1.3:+69102878 | None:intergenic |
| AAAATATAGCGACAAAGACG+TGG | 0.605455 | 1.3:+69103016 | None:intergenic |
| GTACAAAGATACAAGAGGAC+GGG | 0.607406 | 1.3:-69102903 | MS.gene49110:CDS |
| TAAGGATGAGCACGGTCACA+TGG | 0.608482 | 1.3:-69100398 | MS.gene49110:CDS |
| AATCCCTAGTCATACCTGAA+AGG | 0.608968 | 1.3:+69101686 | None:intergenic |
| AAGGGGACTAAATCTGGCAA+AGG | 0.614888 | 1.3:-69102825 | MS.gene49110:CDS |
| ACTGCTGTTCTCACAACTGG+AGG | 0.621198 | 1.3:+69101470 | None:intergenic |
| AAGACGTACAAAGATACAAG+AGG | 0.622138 | 1.3:-69102908 | MS.gene49110:CDS |
| GATATAGTTCTTGCTATAAG+GGG | 0.623233 | 1.3:-69102842 | MS.gene49110:CDS |
| GAGTACGGTTAACGAAAGCT+GGG | 0.623932 | 1.3:-69100446 | MS.gene49110:CDS |
| GGGTTGATTCCATAGCCACC+AGG | 0.625363 | 1.3:+69102950 | None:intergenic |
| ACCAAGGACAGCCACCCCGT+TGG | 0.625656 | 1.3:-69102021 | MS.gene49110:CDS |
| GTCACAATGTCGATTATCTG+CGG | 0.627450 | 1.3:-69103166 | None:intergenic |
| CACTGTCATGCCCTGCAGTG+TGG | 0.628154 | 1.3:+69103080 | None:intergenic |
| GATGGAGAAAGATAATACCA+TGG | 0.629976 | 1.3:-69100668 | MS.gene49110:CDS |
| AAAGTTCCATATTCTGATGG+TGG | 0.632248 | 1.3:+69100532 | None:intergenic |
| TTAAGCGACATACATCTAGC+CGG | 0.633050 | 1.3:+69102524 | None:intergenic |
| ATAGACTTGGAAATATTGAG+AGG | 0.643093 | 1.3:-69102574 | MS.gene49110:CDS |
| AGGGAAGAGAAAGTTTGATG+GGG | 0.643212 | 1.3:-69102768 | MS.gene49110:CDS |
| ACAATGTGATACAAGCGACC+AGG | 0.658544 | 1.3:+69101719 | None:intergenic |
| GGAAGAGAAAGTTTGATGGG+GGG | 0.658997 | 1.3:-69102766 | MS.gene49110:CDS |
| GAATATATCTTCCAACGGGG+TGG | 0.663765 | 1.3:+69102010 | None:intergenic |
| CGTACAAAGATACAAGAGGA+CGG | 0.663943 | 1.3:-69102904 | MS.gene49110:CDS |
| GATGGTGGCGTAAAAGCATG+TGG | 0.680362 | 1.3:+69100547 | None:intergenic |
| AAATATAGCGACAAAGACGT+GGG | 0.685383 | 1.3:+69103017 | None:intergenic |
| GAAGGATACATGTATACCAG+AGG | 0.687416 | 1.3:-69101777 | MS.gene49110:CDS |
| GGGCATGACAGTGAAACTTG+GGG | 0.699008 | 1.3:-69103070 | MS.gene49110:CDS |
| AGCTGCAGCGTTGAGCATGG+TGG | 0.702176 | 1.3:-69102612 | MS.gene49110:CDS |
| TTGATTCCATAGCCACCAGG+AGG | 0.734365 | 1.3:+69102953 | None:intergenic |
| CTTGAATATATCTTCCAACG+GGG | 0.749285 | 1.3:+69102007 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTCGAATATATATATCAA+TGG | + | chr1.3:69101980-69101999 | None:intergenic | 15.0% |
| !!! | TATGTTTTCATAAAATATGA+TGG | + | chr1.3:69102644-69102663 | None:intergenic | 15.0% |
| !!! | TTTATTTTATGAGATAGTAA+AGG | - | chr1.3:69101291-69101310 | MS.gene49110:intron | 15.0% |
| !! | AATGAAGTACAAAAATTACA+AGG | + | chr1.3:69102213-69102232 | None:intergenic | 20.0% |
| !! | CTATCTCATAAAATAAACTT+CGG | + | chr1.3:69101288-69101307 | None:intergenic | 20.0% |
| !! | TATCTCATAAAATAAACTTC+GGG | + | chr1.3:69101287-69101306 | None:intergenic | 20.0% |
| !! | TGATCAAGATACAATATATA+TGG | + | chr1.3:69100672-69100691 | None:intergenic | 20.0% |
| !! | TGTCAACTATAATTAAGATT+CGG | - | chr1.3:69102284-69102303 | MS.gene49110:intron | 20.0% |
| !! | TTCTGTTGGATAATAAATTA+GGG | - | chr1.3:69100757-69100776 | MS.gene49110:intron | 20.0% |
| !!! | AATTTTTGTACTTCATTCTT+TGG | - | chr1.3:69102216-69102235 | MS.gene49110:intron | 20.0% |
| ! | AATTATACTCTTACATTTGC+TGG | - | chr1.3:69100888-69100907 | MS.gene49110:intron | 25.0% |
| ! | ATAAGCTCCAATAAGTAATA+AGG | + | chr1.3:69102530-69102549 | None:intergenic | 25.0% |
| ! | ATGAAGCTGAAAACAATTTA+TGG | + | chr1.3:69102614-69102633 | None:intergenic | 25.0% |
| ! | CGACGATATATTAAATAGAA+TGG | + | chr1.3:69102812-69102831 | None:intergenic | 25.0% |
| ! | GTATGCATACAAATTATCAT+AGG | - | chr1.3:69102473-69102492 | MS.gene49110:intron | 25.0% |
| ! | GTTCTGTTGGATAATAAATT+AGG | - | chr1.3:69100756-69100775 | MS.gene49110:intron | 25.0% |
| ! | TAAATAGAATGGCAAATTAG+TGG | + | chr1.3:69102801-69102820 | None:intergenic | 25.0% |
| ! | TCAAGATACAATATATATGG+TGG | + | chr1.3:69100669-69100688 | None:intergenic | 25.0% |
| ! | TCTGAGAATTTCTAATCTTA+AGG | + | chr1.3:69102310-69102329 | None:intergenic | 25.0% |
| ! | TTAGTTAATTTCAACTGTTG+AGG | - | chr1.3:69101381-69101400 | MS.gene49110:CDS | 25.0% |
| ! | TTCTAAGTAATAACCAATCA+GGG | + | chr1.3:69100617-69100636 | None:intergenic | 25.0% |
| ! | TTGAACTGTTTCCAAAATTA+TGG | + | chr1.3:69101911-69101930 | None:intergenic | 25.0% |
| ! | TTTACATTTCTTTGCAGATT+GGG | - | chr1.3:69102044-69102063 | MS.gene49110:intron | 25.0% |
| ! | TTTCTAAGTAATAACCAATC+AGG | + | chr1.3:69100618-69100637 | None:intergenic | 25.0% |
| !! | ATATATTCAAGTCTCTTTTC+TGG | - | chr1.3:69101549-69101568 | MS.gene49110:intron | 25.0% |
| !! | ATGAGAAGATATTGTTTTCT+TGG | - | chr1.3:69101706-69101725 | MS.gene49110:CDS | 25.0% |
| !! | GCAAATGTAAGAGTATAATT+TGG | + | chr1.3:69100888-69100907 | None:intergenic | 25.0% |
| !! | TAATTTGTATGCATACTTGA+AGG | + | chr1.3:69102469-69102488 | None:intergenic | 25.0% |
| !! | TGATATAGTTCTTGCTATAA+GGG | - | chr1.3:69100701-69100720 | MS.gene49110:intron | 25.0% |
| !!! | TCAAAAGCTCTTTTTGATTT+CGG | + | chr1.3:69102429-69102448 | None:intergenic | 25.0% |
| AAATGTAAAGCCAAACGAAA+AGG | + | chr1.3:69102033-69102052 | None:intergenic | 30.0% | |
| AACACAGAGAAAAAGAGAAA+AGG | + | chr1.3:69102262-69102281 | None:intergenic | 30.0% | |
| ACTTGAATATATCTTCCAAC+GGG | + | chr1.3:69101541-69101560 | None:intergenic | 30.0% | |
| AGATATTCAAAGGAATGACA+AGG | + | chr1.3:69101129-69101148 | None:intergenic | 30.0% | |
| AGTAATAAGGCAATCCAAAT+AGG | + | chr1.3:69102517-69102536 | None:intergenic | 30.0% | |
| ATAACGAAGTTAGTCGTATA+TGG | + | chr1.3:69101589-69101608 | None:intergenic | 30.0% | |
| ATAGACTTGGAAATATTGAG+AGG | - | chr1.3:69100970-69100989 | MS.gene49110:intron | 30.0% | |
| CAATATTTCCAAGTCTATCT+CGG | + | chr1.3:69100968-69100987 | None:intergenic | 30.0% | |
| CATTATTTGGATAGAGAAAG+AGG | - | chr1.3:69102157-69102176 | MS.gene49110:intron | 30.0% | |
| CTAGATGCAAAGATATTCAA+AGG | + | chr1.3:69101139-69101158 | None:intergenic | 30.0% | |
| CTCTTTCTCTATCCAAATAA+TGG | + | chr1.3:69102159-69102178 | None:intergenic | 30.0% | |
| CTTCTGTTAGTTCAACTAAT+AGG | - | chr1.3:69103076-69103095 | MS.gene49110:CDS | 30.0% | |
| CTTTACATTTCTTTGCAGAT+TGG | - | chr1.3:69102043-69102062 | MS.gene49110:intron | 30.0% | |
| GACTTGAATATATCTTCCAA+CGG | + | chr1.3:69101542-69101561 | None:intergenic | 30.0% | |
| TAACGAAGTTAGTCGTATAT+GGG | + | chr1.3:69101588-69101607 | None:intergenic | 30.0% | |
| TAGTTCAACTAATAGGAGTA+CGG | - | chr1.3:69103083-69103102 | MS.gene49110:CDS | 30.0% | |
| TATCAATTTGAGCTTCTTGT+AGG | - | chr1.3:69102755-69102774 | MS.gene49110:CDS | 30.0% | |
| TCAAAAGTTCCATATTCTGA+TGG | + | chr1.3:69103018-69103037 | None:intergenic | 30.0% | |
| TGGAACTTGATTGATTACTT+AGG | + | chr1.3:69102781-69102800 | None:intergenic | 30.0% | |
| ! | AGAATATGGAACTTTTGATG+AGG | - | chr1.3:69103020-69103039 | MS.gene49110:CDS | 30.0% |
| ! | CTGATATAGTTCTTGCTATA+AGG | - | chr1.3:69100700-69100719 | MS.gene49110:intron | 30.0% |
| ! | GATATAGTTCTTGCTATAAG+GGG | - | chr1.3:69100702-69100721 | MS.gene49110:intron | 30.0% |
| ! | TAGATGTATGTCGCTTAATT+TGG | - | chr1.3:69101025-69101044 | MS.gene49110:intron | 30.0% |
| ! | TCCATAAATTGTTTCTCTCT+GGG | + | chr1.3:69101221-69101240 | None:intergenic | 30.0% |
| ! | TGGATTGCCTTATTACTTAT+TGG | - | chr1.3:69102520-69102539 | MS.gene49110:CDS | 30.0% |
| ! | TGTTAAATTAGAGCTTTTGC+TGG | - | chr1.3:69101173-69101192 | MS.gene49110:intron | 30.0% |
| ! | TTTTGTACTTCATTCTTTGG+TGG | - | chr1.3:69102219-69102238 | MS.gene49110:intron | 30.0% |
| !! | AAGTTAATCGCTATTTTCCT+TGG | - | chr1.3:69101485-69101504 | MS.gene49110:CDS | 30.0% |
| AAAATATAGCGACAAAGACG+TGG | + | chr1.3:69100531-69100550 | None:intergenic | 35.0% | |
| AAAGTTCCATATTCTGATGG+TGG | + | chr1.3:69103015-69103034 | None:intergenic | 35.0% | |
| AAATATAGCGACAAAGACGT+GGG | + | chr1.3:69100530-69100549 | None:intergenic | 35.0% | |
| AAGACGTACAAAGATACAAG+AGG | - | chr1.3:69100636-69100655 | MS.gene49110:CDS | 35.0% | |
| AGAAGATGCTAAAAGATCCA+AGG | - | chr1.3:69101790-69101809 | MS.gene49110:CDS | 35.0% | |
| AGTTGAACTAACAGAAGACT+CGG | + | chr1.3:69103073-69103092 | None:intergenic | 35.0% | |
| ATATTGAGAGGAAGAGAGTT+AGG | - | chr1.3:69100982-69101001 | MS.gene49110:intron | 35.0% | |
| ATGCATACTTGAAGGACATA+TGG | + | chr1.3:69102461-69102480 | None:intergenic | 35.0% | |
| CAATATACACACTCAACAAG+AGG | + | chr1.3:69100408-69100427 | None:intergenic | 35.0% | |
| CAGAGAGAAACAATTTATGG+AGG | - | chr1.3:69101220-69101239 | MS.gene49110:intron | 35.0% | |
| CTTGAATATATCTTCCAACG+GGG | + | chr1.3:69101540-69101559 | None:intergenic | 35.0% | |
| GATGGAGAAAGATAATACCA+TGG | - | chr1.3:69102876-69102895 | MS.gene49110:CDS | 35.0% | |
| GTAAAAAGTCATCCTAACCA+AGG | + | chr1.3:69101505-69101524 | None:intergenic | 35.0% | |
| GTCAGCTTGAATAAGTGTAA+GGG | + | chr1.3:69101438-69101457 | None:intergenic | 35.0% | |
| TACTTATTGGAGCTTATCAC+TGG | - | chr1.3:69102533-69102552 | MS.gene49110:CDS | 35.0% | |
| TAGGGAAGAGAAAGTTTGAT+GGG | - | chr1.3:69100775-69100794 | MS.gene49110:intron | 35.0% | |
| TCTCCATCATCAACTGTAAT+TGG | + | chr1.3:69102864-69102883 | None:intergenic | 35.0% | |
| TTAGGGAAGAGAAAGTTTGA+TGG | - | chr1.3:69100774-69100793 | MS.gene49110:intron | 35.0% | |
| TTTCAACTGTTGAGGTTAAG+TGG | - | chr1.3:69101389-69101408 | MS.gene49110:CDS | 35.0% | |
| ! | ATAGGTTTTCCCTCTACTTA+CGG | - | chr1.3:69102491-69102510 | MS.gene49110:intron | 35.0% |
| ! | ATATGGAACTTTTGATGAGG+AGG | - | chr1.3:69103023-69103042 | MS.gene49110:CDS | 35.0% |
| ! | ATGCAGAGTGTGAAATTTTG+AGG | - | chr1.3:69100844-69100863 | MS.gene49110:intron | 35.0% |
| ! | CTCCATAAATTGTTTCTCTC+TGG | + | chr1.3:69101222-69101241 | None:intergenic | 35.0% |
| ! | CTTTGGTGGAATCAAAGTTT+TGG | - | chr1.3:69102233-69102252 | MS.gene49110:intron | 35.0% |
| ! | CTTTTTGATAAGGATGAGCA+CGG | - | chr1.3:69103138-69103157 | MS.gene49110:CDS | 35.0% |
| ! | GATTGAGCGTCTTTTTGATA+AGG | - | chr1.3:69103128-69103147 | MS.gene49110:CDS | 35.0% |
| ! | GTAATGCAGCTTTGTATTCT+TGG | + | chr1.3:69102954-69102973 | None:intergenic | 35.0% |
| ! | GTTAGGATGACTTTTTACCA+AGG | - | chr1.3:69101507-69101526 | MS.gene49110:intron | 35.0% |
| ! | TATGGAACTTTTGATGAGGA+GGG | - | chr1.3:69103024-69103043 | MS.gene49110:CDS | 35.0% |
| ! | TGCAGAGTGTGAAATTTTGA+GGG | - | chr1.3:69100845-69100864 | MS.gene49110:intron | 35.0% |
| !! | AATCGCTATTTTCCTTGGTT+AGG | - | chr1.3:69101490-69101509 | MS.gene49110:intron | 35.0% |
| !! | GTGTGAAATTTTGAGGGAAT+TGG | - | chr1.3:69100851-69100870 | MS.gene49110:intron | 35.0% |
| !!! | TTTTTGATTTCGGCTACACA+TGG | + | chr1.3:69102419-69102438 | None:intergenic | 35.0% |
| AATCCCTAGTCATACCTGAA+AGG | + | chr1.3:69101861-69101880 | None:intergenic | 40.0% | |
| ACTTACATCCAAAGCCCTTT+GGG | + | chr1.3:69102183-69102202 | None:intergenic | 40.0% | |
| AGGCTCAAATTCTTCTGTTG+CGG | + | chr1.3:69100505-69100524 | None:intergenic | 40.0% | |
| AGGGAAGAGAAAGTTTGATG+GGG | - | chr1.3:69100776-69100795 | MS.gene49110:intron | 40.0% | |
| ATTGTGCTTAAGGTGCATGA+AGG | - | chr1.3:69101749-69101768 | MS.gene49110:CDS | 40.0% | |
| CACCTTAAGCACAATAAGCA+TGG | + | chr1.3:69101744-69101763 | None:intergenic | 40.0% | |
| CAGGAAACAATGACAAGACA+CGG | - | chr1.3:69102928-69102947 | MS.gene49110:CDS | 40.0% | |
| CATACTTGAAGGACATATGG+TGG | + | chr1.3:69102458-69102477 | None:intergenic | 40.0% | |
| CATTTCTTTGCAGATTGGGA+AGG | - | chr1.3:69102048-69102067 | MS.gene49110:intron | 40.0% | |
| CGTACAAAGATACAAGAGGA+CGG | - | chr1.3:69100640-69100659 | MS.gene49110:CDS | 40.0% | |
| CGTCAGATCATGCCATTATT+TGG | - | chr1.3:69102144-69102163 | MS.gene49110:intron | 40.0% | |
| CTGTGTATGAAGACGATCTT+CGG | - | chr1.3:69100553-69100572 | MS.gene49110:CDS | 40.0% | |
| GAAGGATACATGTATACCAG+AGG | - | chr1.3:69101767-69101786 | MS.gene49110:CDS | 40.0% | |
| GAGTGATTATGCTGTTCTGT+TGG | - | chr1.3:69100743-69100762 | MS.gene49110:intron | 40.0% | |
| GCCCAGAGAGAAACAATTTA+TGG | - | chr1.3:69101217-69101236 | MS.gene49110:intron | 40.0% | |
| GGTCAGCTTGAATAAGTGTA+AGG | + | chr1.3:69101439-69101458 | None:intergenic | 40.0% | |
| GTACAAAGATACAAGAGGAC+GGG | - | chr1.3:69100641-69100660 | MS.gene49110:CDS | 40.0% | |
| TACACTTATTCAAGCTGACC+TGG | - | chr1.3:69101439-69101458 | MS.gene49110:CDS | 40.0% | |
| TCATCAACTGTAATTGGCAG+TGG | + | chr1.3:69102858-69102877 | None:intergenic | 40.0% | |
| TGCCATGCTTATTGTGCTTA+AGG | - | chr1.3:69101739-69101758 | MS.gene49110:CDS | 40.0% | |
| TGCTATAAGGGGACTAAATC+TGG | - | chr1.3:69100713-69100732 | MS.gene49110:intron | 40.0% | |
| TTAAGCGACATACATCTAGC+CGG | + | chr1.3:69101023-69101042 | None:intergenic | 40.0% | |
| TTGTTGAGAGAAAGCCTTTC+AGG | - | chr1.3:69101844-69101863 | MS.gene49110:intron | 40.0% | |
| TTTACGCCACCATCAGAATA+TGG | - | chr1.3:69103006-69103025 | MS.gene49110:CDS | 40.0% | |
| ! | AAAGCCTTTCAGGTATGACT+AGG | - | chr1.3:69101854-69101873 | MS.gene49110:intron | 40.0% |
| ! | AAGCCTTTCAGGTATGACTA+GGG | - | chr1.3:69101855-69101874 | MS.gene49110:intron | 40.0% |
| ! | CGGAACTGTGACCATAATTT+TGG | - | chr1.3:69101897-69101916 | MS.gene49110:intron | 40.0% |
| ! | GCTTATACAGCCTTTTCGTT+TGG | - | chr1.3:69102020-69102039 | MS.gene49110:CDS | 40.0% |
| ! | TAGGTGTTATGCTATTGCTC+CGG | - | chr1.3:69101001-69101020 | MS.gene49110:intron | 40.0% |
| ! | TCTTTTAGCATCTTCTCCTC+TGG | + | chr1.3:69101786-69101805 | None:intergenic | 40.0% |
| !! | CTGCCAATTACAGTTGATGA+TGG | - | chr1.3:69102858-69102877 | MS.gene49110:CDS | 40.0% |
| !! | GATTCTACAGAGTGCTGATA+CGG | - | chr1.3:69101877-69101896 | MS.gene49110:intron | 40.0% |
| !! | TGTTCACAATGGGCTGTTAA+AGG | - | chr1.3:69100803-69100822 | MS.gene49110:intron | 40.0% |
| AAAAGATGTCTCCACACTGC+AGG | - | chr1.3:69100453-69100472 | MS.gene49110:CDS | 45.0% | |
| AAAGATGTCTCCACACTGCA+GGG | - | chr1.3:69100454-69100473 | MS.gene49110:CDS | 45.0% | |
| AAAGCAAATCATGCAGCGTC+AGG | - | chr1.3:69102909-69102928 | MS.gene49110:CDS | 45.0% | |
| AAGGGGACTAAATCTGGCAA+AGG | - | chr1.3:69100719-69100738 | MS.gene49110:intron | 45.0% | |
| ACAATGTGATACAAGCGACC+AGG | + | chr1.3:69101828-69101847 | None:intergenic | 45.0% | |
| AGGGCATGACAGTGAAACTT+GGG | - | chr1.3:69100473-69100492 | MS.gene49110:CDS | 45.0% | |
| CATAAACTCTGTCGTGCTTC+AGG | - | chr1.3:69101067-69101086 | MS.gene49110:intron | 45.0% | |
| CCAAATAGGCCGTAAGTAGA+GGG | + | chr1.3:69102503-69102522 | None:intergenic | 45.0% | |
| CTGACGTAGCATTGCAAGAA+AGG | + | chr1.3:69102130-69102149 | None:intergenic | 45.0% | |
| GAATATATCTTCCAACGGGG+TGG | + | chr1.3:69101537-69101556 | None:intergenic | 45.0% | |
| GACTTACATCCAAAGCCCTT+TGG | + | chr1.3:69102184-69102203 | None:intergenic | 45.0% | |
| GAGTACGGTTAACGAAAGCT+GGG | - | chr1.3:69103098-69103117 | MS.gene49110:CDS | 45.0% | |
| GATAGAGAAAGAGGCCCAAA+GGG | - | chr1.3:69102166-69102185 | MS.gene49110:intron | 45.0% | |
| GCTATGGAATCAACCCTGAT+TGG | - | chr1.3:69100601-69100620 | MS.gene49110:CDS | 45.0% | |
| GGAAGAGAAAGTTTGATGGG+GGG | - | chr1.3:69100778-69100797 | MS.gene49110:intron | 45.0% | |
| GGGAAGAGAAAGTTTGATGG+GGG | - | chr1.3:69100777-69100796 | MS.gene49110:intron | 45.0% | |
| TACAAGATTCAGCATGAGCC+AGG | + | chr1.3:69101460-69101479 | None:intergenic | 45.0% | |
| TCCAAATAGGCCGTAAGTAG+AGG | + | chr1.3:69102504-69102523 | None:intergenic | 45.0% | |
| TGCTCAAACCTTCCATCTAC+TGG | + | chr1.3:69102101-69102120 | None:intergenic | 45.0% | |
| TTGCTTTGCAGGTACTTCCA+TGG | + | chr1.3:69102896-69102915 | None:intergenic | 45.0% | |
| ! | AACTTTTGATGAGGAGGGAG+AGG | - | chr1.3:69103029-69103048 | MS.gene49110:CDS | 45.0% |
| ! | ACATTTGCTGGACATTCCCT+TGG | - | chr1.3:69100900-69100919 | MS.gene49110:intron | 45.0% |
| ! | AGCACTTGTGAGGCTTGTTT+GGG | - | chr1.3:69102560-69102579 | MS.gene49110:CDS | 45.0% |
| ! | ATGGGGGGTATGTTCACAAT+GGG | - | chr1.3:69100793-69100812 | MS.gene49110:intron | 45.0% |
| !! | ATTGTTTAGCTTGCGCTCGT+TGG | - | chr1.3:69100424-69100443 | MS.gene49110:CDS | 45.0% |
| !! | TTGTTTAGCTTGCGCTCGTT+GGG | - | chr1.3:69100425-69100444 | MS.gene49110:CDS | 45.0% |
| ACGATCTTCGGAACCCTCTT+TGG | - | chr1.3:69100565-69100584 | MS.gene49110:CDS | 50.0% | |
| ACTGCTGTTCTCACAACTGG+AGG | + | chr1.3:69102077-69102096 | None:intergenic | 50.0% | |
| AGAACAGCAGTGCCAGTAGA+TGG | - | chr1.3:69102086-69102105 | MS.gene49110:intron | 50.0% | |
| AGAGGAGAGTTCAAGGTCAG+AGG | - | chr1.3:69103047-69103066 | MS.gene49110:CDS | 50.0% | |
| CAGGGCATGACAGTGAAACT+TGG | - | chr1.3:69100472-69100491 | MS.gene49110:CDS | 50.0% | |
| CCCTCTACTTACGGCCTATT+TGG | - | chr1.3:69102500-69102519 | MS.gene49110:intron | 50.0% | |
| CGATCTTCGGAACCCTCTTT+GGG | - | chr1.3:69100566-69100585 | MS.gene49110:CDS | 50.0% | |
| GCTGTTAAAGGCTGCTGGAT+GGG | - | chr1.3:69100815-69100834 | MS.gene49110:intron | 50.0% | |
| GGAGTACGGTTAACGAAAGC+TGG | - | chr1.3:69103097-69103116 | MS.gene49110:CDS | 50.0% | |
| GGATAGAGAAAGAGGCCCAA+AGG | - | chr1.3:69102165-69102184 | MS.gene49110:intron | 50.0% | |
| GGGCATGACAGTGAAACTTG+GGG | - | chr1.3:69100474-69100493 | MS.gene49110:CDS | 50.0% | |
| GTGCAGAACCGAGATAGACT+TGG | - | chr1.3:69100957-69100976 | MS.gene49110:intron | 50.0% | |
| TAAGGATGAGCACGGTCACA+TGG | - | chr1.3:69103146-69103165 | MS.gene49110:CDS | 50.0% | |
| TCGGCTACACATGGTAGATG+TGG | + | chr1.3:69102410-69102429 | None:intergenic | 50.0% | |
| TGCAGCTACTCCTGATCCAA+GGG | + | chr1.3:69100919-69100938 | None:intergenic | 50.0% | |
| TTGATTCCATAGCCACCAGG+AGG | + | chr1.3:69100594-69100613 | None:intergenic | 50.0% | |
| ! | AGGCTTGTTTGGGGAGCTTA+TGG | - | chr1.3:69102570-69102589 | MS.gene49110:CDS | 50.0% |
| ! | GAGCACTTGTGAGGCTTGTT+TGG | - | chr1.3:69102559-69102578 | MS.gene49110:CDS | 50.0% |
| ! | GATGGGGGGTATGTTCACAA+TGG | - | chr1.3:69100792-69100811 | MS.gene49110:intron | 50.0% |
| ! | GATGGTGGCGTAAAAGCATG+TGG | + | chr1.3:69103000-69103019 | None:intergenic | 50.0% |
| ! | GCACTTGTGAGGCTTGTTTG+GGG | - | chr1.3:69102561-69102580 | MS.gene49110:CDS | 50.0% |
| !! | AAAGGCTGCTGGATGGGTTA+TGG | - | chr1.3:69100821-69100840 | MS.gene49110:intron | 50.0% |
| !! | AATGGGCTGTTAAAGGCTGC+TGG | - | chr1.3:69100810-69100829 | MS.gene49110:intron | 50.0% |
| !! | CGCTGCATGATTTGCTTTGC+AGG | + | chr1.3:69102907-69102926 | None:intergenic | 50.0% |
| AGGAGGGAGAGGAGAGTTCA+AGG | - | chr1.3:69103040-69103059 | MS.gene49110:CDS | 55.0% | |
| CACTGGCATGAGCACTTGTG+AGG | - | chr1.3:69102550-69102569 | MS.gene49110:CDS | 55.0% | |
| CAGCAGTGCCAGTAGATGGA+AGG | - | chr1.3:69102090-69102109 | MS.gene49110:intron | 55.0% | |
| CCAAGGAGACTCTATGCACC+TGG | - | chr1.3:69101807-69101826 | MS.gene49110:CDS | 55.0% | |
| CCAGGTGCATAGAGTCTCCT+TGG | + | chr1.3:69101810-69101829 | None:intergenic | 55.0% | |
| CTGCAGCTACTCCTGATCCA+AGG | + | chr1.3:69100920-69100939 | None:intergenic | 55.0% | |
| GAAAGAGGCCCAAAGGGCTT+TGG | - | chr1.3:69102172-69102191 | MS.gene49110:intron | 55.0% | |
| GCTGGACATTCCCTTGGATC+AGG | - | chr1.3:69100906-69100925 | MS.gene49110:intron | 55.0% | |
| GGCACTGCTGTTCTCACAAC+TGG | + | chr1.3:69102080-69102099 | None:intergenic | 55.0% | |
| GGCTGTTAAAGGCTGCTGGA+TGG | - | chr1.3:69100814-69100833 | MS.gene49110:intron | 55.0% | |
| TAGCGACAAAGACGTGGGAC+AGG | + | chr1.3:69100525-69100544 | None:intergenic | 55.0% | |
| ! | AGTAGCTGCAGCGTTGAGCA+TGG | - | chr1.3:69100929-69100948 | MS.gene49110:intron | 55.0% |
| ! | GGGTTGATTCCATAGCCACC+AGG | + | chr1.3:69100597-69100616 | None:intergenic | 55.0% |
| CACTGTCATGCCCTGCAGTG+TGG | + | chr1.3:69100467-69100486 | None:intergenic | 60.0% | |
| ! | AGCTGCAGCGTTGAGCATGG+TGG | - | chr1.3:69100932-69100951 | MS.gene49110:intron | 60.0% |
| AACCCTCTTTGGGCGCCTCC+TGG | - | chr1.3:69100576-69100595 | MS.gene49110:CDS | 65.0% | |
| ACCAAGGACAGCCACCCCGT+TGG | - | chr1.3:69101523-69101542 | MS.gene49110:intron | 65.0% | |
| TCCAACGGGGTGGCTGTCCT+TGG | + | chr1.3:69101527-69101546 | None:intergenic | 65.0% | |
| ! | TAGCTTGCGCTCGTTGGGCG+TGG | - | chr1.3:69100430-69100449 | MS.gene49110:CDS | 65.0% |
| !! | CACCAGGAGGCGCCCAAAGA+GGG | + | chr1.3:69100581-69100600 | None:intergenic | 65.0% |
| CCTCTTTGGGCGCCTCCTGG+TGG | - | chr1.3:69100579-69100598 | MS.gene49110:CDS | 70.0% | |
| TGGGCGCCTCCTGGTGGCTA+TGG | - | chr1.3:69100585-69100604 | MS.gene49110:CDS | 70.0% | |
| !! | CCACCAGGAGGCGCCCAAAG+AGG | + | chr1.3:69100582-69100601 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 69100384 | 69103182 | 69100384 | ID=MS.gene49110 |
| chr1.3 | mRNA | 69100384 | 69103182 | 69100384 | ID=MS.gene49110.t1;Parent=MS.gene49110 |
| chr1.3 | exon | 69102517 | 69103182 | 69102517 | ID=MS.gene49110.t1.exon1;Parent=MS.gene49110.t1 |
| chr1.3 | CDS | 69102517 | 69103182 | 69102517 | ID=cds.MS.gene49110.t1;Parent=MS.gene49110.t1 |
| chr1.3 | exon | 69101996 | 69102054 | 69101996 | ID=MS.gene49110.t1.exon2;Parent=MS.gene49110.t1 |
| chr1.3 | CDS | 69101996 | 69102054 | 69101996 | ID=cds.MS.gene49110.t1;Parent=MS.gene49110.t1 |
| chr1.3 | exon | 69101701 | 69101829 | 69101701 | ID=MS.gene49110.t1.exon3;Parent=MS.gene49110.t1 |
| chr1.3 | CDS | 69101701 | 69101829 | 69101701 | ID=cds.MS.gene49110.t1;Parent=MS.gene49110.t1 |
| chr1.3 | exon | 69101370 | 69101505 | 69101370 | ID=MS.gene49110.t1.exon4;Parent=MS.gene49110.t1 |
| chr1.3 | CDS | 69101370 | 69101505 | 69101370 | ID=cds.MS.gene49110.t1;Parent=MS.gene49110.t1 |
| chr1.3 | exon | 69100384 | 69100695 | 69100384 | ID=MS.gene49110.t1.exon5;Parent=MS.gene49110.t1 |
| chr1.3 | CDS | 69100384 | 69100695 | 69100384 | ID=cds.MS.gene49110.t1;Parent=MS.gene49110.t1 |
| Gene Sequence |
| Protein sequence |
